Query psy576
Match_columns 159
No_of_seqs 109 out of 1336
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 17:19:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjv_A ATP-dependent RNA helic 100.0 6.1E-33 2.1E-37 187.6 13.2 142 15-157 5-146 (163)
2 2rb4_A ATP-dependent RNA helic 100.0 9.5E-33 3.3E-37 188.6 11.7 141 16-156 4-150 (175)
3 1t5i_A C_terminal domain of A 100.0 7.2E-32 2.5E-36 183.8 15.4 136 17-153 3-138 (172)
4 1fuk_A Eukaryotic initiation f 100.0 1.5E-32 5.1E-37 186.0 11.5 139 18-156 2-140 (165)
5 2jgn_A DBX, DDX3, ATP-dependen 100.0 7E-32 2.4E-36 185.9 13.1 143 14-157 14-157 (185)
6 3eaq_A Heat resistant RNA depe 100.0 4.7E-31 1.6E-35 185.4 14.0 134 21-155 7-140 (212)
7 2p6n_A ATP-dependent RNA helic 100.0 9.7E-31 3.3E-35 181.0 14.3 137 15-153 25-161 (191)
8 3i32_A Heat resistant RNA depe 100.0 2.8E-30 9.7E-35 189.6 13.7 135 20-155 3-137 (300)
9 2yjt_D ATP-dependent RNA helic 99.9 1.1E-32 3.7E-37 187.5 0.0 142 17-158 1-142 (170)
10 2db3_A ATP-dependent RNA helic 100.0 1.8E-27 6.2E-32 182.8 16.9 135 18-154 274-408 (434)
11 2j0s_A ATP-dependent RNA helic 100.0 6.2E-28 2.1E-32 183.5 11.7 140 17-156 247-386 (410)
12 2i4i_A ATP-dependent RNA helic 99.9 2.1E-27 7.4E-32 180.7 12.9 139 18-157 248-387 (417)
13 3eiq_A Eukaryotic initiation f 99.9 1.4E-27 4.9E-32 181.4 10.3 139 18-156 252-390 (414)
14 1s2m_A Putative ATP-dependent 99.9 5.1E-27 1.8E-31 177.9 13.0 137 19-156 232-368 (400)
15 1xti_A Probable ATP-dependent 99.9 2E-26 6.9E-31 173.9 14.9 135 19-154 224-358 (391)
16 3pey_A ATP-dependent RNA helic 99.9 1E-26 3.5E-31 175.3 13.2 137 18-154 215-357 (395)
17 1oyw_A RECQ helicase, ATP-depe 99.9 1E-26 3.6E-31 182.3 13.2 125 31-155 221-345 (523)
18 3fht_A ATP-dependent RNA helic 99.9 1.1E-26 3.9E-31 176.2 12.2 138 17-154 237-380 (412)
19 1hv8_A Putative ATP-dependent 99.9 4.3E-26 1.5E-30 170.4 14.0 136 19-156 213-348 (367)
20 2v1x_A ATP-dependent DNA helic 99.9 4.7E-26 1.6E-30 180.7 12.1 123 33-155 253-376 (591)
21 3i5x_A ATP-dependent RNA helic 99.9 1.5E-25 5.3E-30 176.8 13.1 114 44-157 337-453 (563)
22 3sqw_A ATP-dependent RNA helic 99.9 2.6E-25 8.8E-30 176.3 13.1 113 44-156 286-401 (579)
23 1fuu_A Yeast initiation factor 99.9 3.5E-27 1.2E-31 178.1 0.0 141 18-158 231-371 (394)
24 3fmp_B ATP-dependent RNA helic 99.9 7.7E-27 2.6E-31 181.1 0.0 138 17-154 304-447 (479)
25 1wp9_A ATP-dependent RNA helic 99.9 1.9E-24 6.4E-29 166.2 12.5 126 29-155 340-477 (494)
26 2z0m_A 337AA long hypothetical 99.9 9.6E-24 3.3E-28 156.2 13.1 128 19-154 196-323 (337)
27 3fho_A ATP-dependent RNA helic 99.9 2.6E-25 9E-30 173.8 4.3 137 18-154 329-471 (508)
28 1z5z_A Helicase of the SNF2/RA 99.9 9.8E-24 3.3E-28 153.0 9.8 124 29-152 93-223 (271)
29 4a2p_A RIG-I, retinoic acid in 99.9 6.6E-24 2.2E-28 166.6 9.0 123 30-154 370-509 (556)
30 3oiy_A Reverse gyrase helicase 99.9 2.1E-22 7.1E-27 153.5 12.6 112 32-150 239-362 (414)
31 4gl2_A Interferon-induced heli 99.9 1.9E-22 6.5E-27 162.6 12.9 121 31-153 380-519 (699)
32 1yks_A Genome polyprotein [con 99.9 3.5E-23 1.2E-27 159.3 8.2 107 45-156 176-305 (440)
33 3tbk_A RIG-I helicase domain; 99.9 1.5E-23 5E-28 164.4 5.7 123 30-154 369-508 (555)
34 3dmq_A RNA polymerase-associat 99.9 2.3E-22 8E-27 167.0 12.6 121 31-151 488-611 (968)
35 2ykg_A Probable ATP-dependent 99.9 1.7E-23 5.9E-28 168.6 5.3 124 30-155 378-518 (696)
36 4a2q_A RIG-I, retinoic acid in 99.9 8.3E-23 2.9E-27 167.0 9.0 123 30-154 611-750 (797)
37 1tf5_A Preprotein translocase 99.9 2.6E-22 8.9E-27 162.0 11.5 123 31-155 415-547 (844)
38 2d7d_A Uvrabc system protein B 99.9 1.3E-21 4.3E-26 157.1 14.8 124 31-155 428-558 (661)
39 1c4o_A DNA nucleotide excision 99.9 1.3E-21 4.3E-26 157.2 14.8 124 31-155 422-552 (664)
40 2jlq_A Serine protease subunit 99.9 2.4E-22 8.1E-27 155.1 9.5 104 45-153 187-311 (451)
41 2whx_A Serine protease/ntpase/ 99.9 3.1E-22 1E-26 159.5 9.8 107 45-156 354-484 (618)
42 2z83_A Helicase/nucleoside tri 99.9 1.3E-22 4.4E-27 156.9 6.7 103 46-153 190-313 (459)
43 4a2w_A RIG-I, retinoic acid in 99.9 4.3E-22 1.5E-26 165.0 10.1 123 30-154 611-750 (936)
44 3jux_A Protein translocase sub 99.9 2.9E-21 1E-25 153.8 13.4 122 31-154 457-588 (822)
45 2va8_A SSO2462, SKI2-type heli 99.9 3.9E-21 1.3E-25 155.6 14.0 121 32-154 240-409 (715)
46 2wv9_A Flavivirin protease NS2 99.9 6.2E-22 2.1E-26 158.9 9.2 101 45-150 409-530 (673)
47 2zj8_A DNA helicase, putative 99.9 3.8E-21 1.3E-25 155.7 12.8 122 31-154 224-388 (720)
48 2fwr_A DNA repair protein RAD2 99.9 4.8E-22 1.7E-26 153.8 7.1 118 31-153 334-454 (472)
49 2fsf_A Preprotein translocase 99.9 6.1E-21 2.1E-25 153.9 13.2 123 31-155 424-585 (853)
50 2xgj_A ATP-dependent RNA helic 99.9 5.4E-21 1.8E-25 159.2 13.3 119 35-153 332-499 (1010)
51 2p6r_A Afuhel308 helicase; pro 99.8 5.7E-21 2E-25 154.3 11.8 120 33-154 231-389 (702)
52 2v6i_A RNA helicase; membrane, 99.8 3E-21 1E-25 148.2 9.5 108 38-150 164-288 (431)
53 2xau_A PRE-mRNA-splicing facto 99.8 8.7E-22 3E-26 160.3 6.5 115 39-154 296-444 (773)
54 3l9o_A ATP-dependent RNA helic 99.8 7.1E-21 2.4E-25 159.6 11.2 118 37-154 432-598 (1108)
55 2oca_A DAR protein, ATP-depend 99.8 4.4E-21 1.5E-25 149.7 9.0 119 32-151 331-453 (510)
56 1z63_A Helicase of the SNF2/RA 99.8 1.5E-20 5E-25 146.5 11.3 118 31-148 324-446 (500)
57 1nkt_A Preprotein translocase 99.8 3.4E-20 1.1E-24 150.1 13.0 122 31-154 443-618 (922)
58 2eyq_A TRCF, transcription-rep 99.8 1.4E-20 4.7E-25 158.5 10.9 109 45-153 811-922 (1151)
59 4a4z_A Antiviral helicase SKI2 99.8 4.4E-20 1.5E-24 153.7 13.6 122 29-151 319-490 (997)
60 3rc3_A ATP-dependent RNA helic 99.8 8E-20 2.7E-24 146.5 12.7 104 47-151 321-443 (677)
61 1z3i_X Similar to RAD54-like; 99.8 1.5E-19 5.1E-24 144.9 14.0 119 31-149 398-522 (644)
62 1gku_B Reverse gyrase, TOP-RG; 99.8 5.3E-20 1.8E-24 154.0 9.8 118 31-155 261-456 (1054)
63 3o8b_A HCV NS3 protease/helica 99.8 7.3E-20 2.5E-24 145.9 9.8 104 44-157 394-518 (666)
64 3mwy_W Chromo domain-containin 99.8 1.9E-19 6.5E-24 147.3 12.1 119 31-149 555-678 (800)
65 1gm5_A RECG; helicase, replica 99.8 5.2E-21 1.8E-25 155.4 1.8 108 45-152 577-696 (780)
66 4ddu_A Reverse gyrase; topoiso 99.8 2.9E-19 9.8E-24 150.0 10.7 96 19-125 287-388 (1104)
67 3h1t_A Type I site-specific re 99.8 1E-18 3.5E-23 138.7 11.9 98 44-142 437-545 (590)
68 4f92_B U5 small nuclear ribonu 99.8 1.5E-18 5E-23 150.4 10.8 114 44-157 315-477 (1724)
69 4f92_B U5 small nuclear ribonu 99.7 3.1E-18 1.1E-22 148.3 10.1 114 43-156 1152-1311(1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 3E-13 1E-17 112.9 11.5 105 46-151 537-707 (1038)
71 2vl7_A XPD; helicase, unknown 98.8 1.4E-08 4.8E-13 80.0 8.6 108 37-151 376-519 (540)
72 2ipc_A Preprotein translocase 98.8 5E-08 1.7E-12 80.0 11.0 122 31-154 426-699 (997)
73 3hgt_A HDA1 complex subunit 3; 98.7 1.6E-07 5.6E-12 69.0 9.4 119 30-153 107-237 (328)
74 4a15_A XPD helicase, ATP-depen 98.3 3.7E-06 1.3E-10 67.3 10.3 108 39-151 442-582 (620)
75 3crv_A XPD/RAD3 related DNA he 97.9 0.00037 1.3E-08 54.9 13.1 100 45-151 392-529 (551)
76 1gm5_A RECG; helicase, replica 96.9 0.008 2.7E-07 49.4 9.8 100 22-121 391-497 (780)
77 3oiy_A Reverse gyrase helicase 96.7 0.014 4.9E-07 43.9 9.6 99 22-120 38-145 (414)
78 4ddu_A Reverse gyrase; topoiso 96.2 0.045 1.5E-06 46.7 10.5 99 22-120 95-202 (1104)
79 2eyq_A TRCF, transcription-rep 95.6 0.12 4E-06 44.4 10.8 99 22-120 626-731 (1151)
80 2v1x_A ATP-dependent DNA helic 95.2 0.16 5.3E-06 40.5 9.5 81 22-104 61-144 (591)
81 1oyw_A RECQ helicase, ATP-depe 94.6 0.12 4.2E-06 40.3 7.4 81 22-104 42-123 (523)
82 1t6n_A Probable ATP-dependent 93.8 0.92 3.1E-05 30.6 9.8 96 22-120 53-164 (220)
83 2l82_A Designed protein OR32; 93.7 0.68 2.3E-05 28.3 8.0 49 49-97 5-53 (162)
84 2oxc_A Probable ATP-dependent 93.5 0.61 2.1E-05 31.9 8.6 94 22-120 63-172 (230)
85 3ber_A Probable ATP-dependent 93.2 0.92 3.1E-05 31.6 9.2 95 22-120 82-192 (249)
86 3fe2_A Probable ATP-dependent 92.3 1.9 6.5E-05 29.6 10.5 95 22-120 68-182 (242)
87 1gku_B Reverse gyrase, TOP-RG; 92.3 0.68 2.3E-05 39.4 8.6 97 22-120 73-181 (1054)
88 1xti_A Probable ATP-dependent 91.5 2.2 7.6E-05 31.2 9.9 96 22-120 47-158 (391)
89 2pl3_A Probable ATP-dependent 91.4 1.9 6.4E-05 29.4 8.9 94 22-120 64-177 (236)
90 1tf5_A Preprotein translocase 90.8 1.8 6.3E-05 35.9 9.3 75 24-104 100-180 (844)
91 3bor_A Human initiation factor 90.7 0.91 3.1E-05 31.2 6.7 96 22-120 69-179 (237)
92 1vec_A ATP-dependent RNA helic 90.5 1.4 4.9E-05 29.2 7.4 95 22-120 42-152 (206)
93 1qde_A EIF4A, translation init 90.4 0.74 2.5E-05 31.2 6.0 94 22-120 53-161 (224)
94 3gk5_A Uncharacterized rhodane 90.1 0.31 1.1E-05 29.4 3.5 36 45-80 54-89 (108)
95 2fsf_A Preprotein translocase 90.0 2 6.9E-05 35.7 8.9 75 24-104 91-171 (853)
96 3tbk_A RIG-I helicase domain; 90.0 1.4 4.9E-05 33.9 7.9 79 22-104 21-110 (555)
97 1nkt_A Preprotein translocase 89.7 2.6 9E-05 35.3 9.4 75 24-104 128-208 (922)
98 3foj_A Uncharacterized protein 89.5 0.31 1.1E-05 28.9 3.1 36 45-80 55-90 (100)
99 2gxq_A Heat resistant RNA depe 89.4 3.3 0.00011 27.4 10.1 95 22-120 40-150 (207)
100 1wp9_A ATP-dependent RNA helic 89.2 2.7 9.3E-05 31.4 8.8 94 22-120 25-131 (494)
101 1hv8_A Putative ATP-dependent 89.1 4.6 0.00016 29.1 9.8 94 22-120 46-153 (367)
102 3eme_A Rhodanese-like domain p 89.0 0.28 9.6E-06 29.2 2.6 36 45-80 55-90 (103)
103 3iuy_A Probable ATP-dependent 89.0 3.9 0.00013 27.6 9.0 95 22-120 59-173 (228)
104 2db3_A ATP-dependent RNA helic 89.0 3.6 0.00012 31.1 9.3 95 22-120 95-209 (434)
105 3iwh_A Rhodanese-like domain p 88.8 0.3 1E-05 29.4 2.6 36 45-80 55-90 (103)
106 4a2p_A RIG-I, retinoic acid in 88.6 2.2 7.6E-05 32.9 8.1 95 22-120 24-136 (556)
107 1wrb_A DJVLGB; RNA helicase, D 88.5 1.9 6.5E-05 29.8 7.0 70 47-120 101-180 (253)
108 4a2q_A RIG-I, retinoic acid in 88.3 3.3 0.00011 34.0 9.2 79 22-104 265-354 (797)
109 1fuu_A Yeast initiation factor 88.2 2 6.9E-05 31.4 7.4 78 22-104 60-146 (394)
110 1wv9_A Rhodanese homolog TT165 87.9 0.56 1.9E-05 27.4 3.4 35 47-81 54-88 (94)
111 3ly5_A ATP-dependent RNA helic 87.8 5.3 0.00018 27.8 10.1 95 22-120 93-207 (262)
112 2jtq_A Phage shock protein E; 87.1 2.3 7.9E-05 24.1 5.7 36 45-81 40-76 (85)
113 2z0m_A 337AA long hypothetical 87.1 4.3 0.00015 28.9 8.4 77 22-104 33-113 (337)
114 3fmo_B ATP-dependent RNA helic 87.0 2.8 9.4E-05 30.1 7.2 92 22-120 133-241 (300)
115 3hix_A ALR3790 protein; rhodan 86.4 0.74 2.5E-05 27.6 3.4 36 45-80 51-87 (106)
116 2ipc_A Preprotein translocase 86.3 3 0.0001 35.1 7.7 72 27-104 99-176 (997)
117 2k0z_A Uncharacterized protein 86.0 1.4 4.7E-05 26.5 4.5 38 44-81 54-91 (110)
118 1q0u_A Bstdead; DEAD protein, 85.5 0.91 3.1E-05 30.7 3.9 95 22-120 43-156 (219)
119 3g5j_A Putative ATP/GTP bindin 85.5 0.88 3E-05 28.1 3.5 35 47-81 90-125 (134)
120 2i4i_A ATP-dependent RNA helic 85.1 7.4 0.00025 28.7 9.0 70 47-120 102-181 (417)
121 3nhv_A BH2092 protein; alpha-b 84.8 0.84 2.9E-05 29.1 3.2 36 45-80 71-108 (144)
122 1tq1_A AT5G66040, senescence-a 83.6 1 3.4E-05 28.0 3.1 36 45-80 81-117 (129)
123 3eiq_A Eukaryotic initiation f 83.3 9.9 0.00034 27.9 9.0 95 23-120 80-189 (414)
124 2fsx_A RV0390, COG0607: rhodan 83.3 1.3 4.6E-05 28.1 3.7 37 45-81 79-116 (148)
125 1gmx_A GLPE protein; transfera 83.3 0.83 2.8E-05 27.4 2.6 36 45-80 57-93 (108)
126 1qxn_A SUD, sulfide dehydrogen 82.4 0.88 3E-05 28.7 2.5 37 44-80 80-117 (137)
127 3flh_A Uncharacterized protein 82.3 0.52 1.8E-05 29.2 1.4 44 37-80 61-107 (124)
128 1s2m_A Putative ATP-dependent 81.9 12 0.00042 27.3 9.1 95 22-120 60-169 (400)
129 2hhg_A Hypothetical protein RP 81.0 1.1 3.8E-05 28.1 2.6 36 45-80 85-121 (139)
130 4a2w_A RIG-I, retinoic acid in 80.5 6.5 0.00022 33.0 7.7 79 22-104 265-354 (936)
131 3i5x_A ATP-dependent RNA helic 80.2 19 0.00064 27.9 11.4 96 22-120 113-232 (563)
132 2fwr_A DNA repair protein RAD2 80.0 6.4 0.00022 29.8 7.1 68 23-104 111-179 (472)
133 2fz4_A DNA repair protein RAD2 79.3 13 0.00044 25.5 8.5 68 23-104 111-179 (237)
134 2ykg_A Probable ATP-dependent 78.8 5.7 0.0002 31.7 6.7 96 21-120 29-142 (696)
135 3ilm_A ALR3790 protein; rhodan 78.7 1.7 6E-05 27.5 3.0 36 45-80 55-91 (141)
136 3d1p_A Putative thiosulfate su 78.6 1.5 5.1E-05 27.5 2.7 36 45-80 90-126 (139)
137 3hjh_A Transcription-repair-co 78.4 16 0.00056 28.2 8.9 111 22-134 17-145 (483)
138 2j0s_A ATP-dependent RNA helic 78.2 18 0.00061 26.6 10.4 95 22-120 76-185 (410)
139 2oca_A DAR protein, ATP-depend 76.6 8.7 0.0003 29.4 7.0 92 22-120 130-231 (510)
140 4f67_A UPF0176 protein LPG2838 75.9 3.3 0.00011 29.5 4.0 41 40-80 175-216 (265)
141 1vee_A Proline-rich protein fa 75.8 1.5 5.2E-05 27.4 2.1 37 45-81 73-110 (134)
142 3sqw_A ATP-dependent RNA helic 75.7 27 0.00092 27.3 11.4 96 22-120 62-181 (579)
143 3dkp_A Probable ATP-dependent 75.3 8.1 0.00028 26.3 5.9 96 22-120 68-181 (245)
144 3tg1_B Dual specificity protei 74.3 2.6 8.9E-05 27.1 3.0 35 46-80 93-136 (158)
145 1c4o_A DNA nucleotide excision 73.0 35 0.0012 27.5 10.8 88 23-112 32-146 (664)
146 3cnb_A DNA-binding response re 71.0 14 0.00049 22.2 7.9 111 25-141 12-131 (143)
147 3b6e_A Interferon-induced heli 70.7 8.4 0.00029 25.4 5.0 56 45-104 81-140 (216)
148 2l69_A Rossmann 2X3 fold prote 70.5 14 0.00047 21.8 6.7 45 49-96 5-50 (134)
149 4gl2_A Interferon-induced heli 70.5 1.1 3.7E-05 36.0 0.5 79 22-104 24-114 (699)
150 1urh_A 3-mercaptopyruvate sulf 70.4 7.5 0.00025 27.4 4.9 37 45-81 229-266 (280)
151 1uar_A Rhodanese; sulfurtransf 70.2 8.3 0.00028 27.2 5.1 45 36-80 220-269 (285)
152 3hjh_A Transcription-repair-co 68.5 5.8 0.0002 30.7 4.2 75 34-121 371-445 (483)
153 4e7p_A Response regulator; DNA 68.2 18 0.00061 22.2 7.4 113 23-141 22-141 (150)
154 3h11_B Caspase-8; cell death, 67.3 26 0.0009 24.8 7.2 39 55-94 47-85 (271)
155 3ilh_A Two component response 66.2 19 0.00065 21.7 7.5 113 24-141 12-140 (146)
156 3pey_A ATP-dependent RNA helic 65.7 34 0.0012 24.6 7.8 92 21-120 45-151 (395)
157 2d7d_A Uvrabc system protein B 64.9 33 0.0011 27.6 8.0 111 22-134 35-176 (661)
158 1u6t_A SH3 domain-binding glut 64.8 20 0.00069 22.1 5.4 40 53-92 13-52 (121)
159 2lnd_A De novo designed protei 64.6 17 0.00059 20.7 7.0 47 45-92 50-98 (112)
160 3dmn_A Putative DNA helicase; 64.6 26 0.00089 22.7 8.1 63 46-123 61-123 (174)
161 2eg4_A Probable thiosulfate su 63.8 8.8 0.0003 26.2 4.0 37 44-80 182-218 (230)
162 3o8b_A HCV NS3 protease/helica 63.5 49 0.0017 26.8 8.7 83 27-121 239-325 (666)
163 1e0c_A Rhodanese, sulfurtransf 63.4 8 0.00027 27.0 3.9 37 44-80 221-258 (271)
164 3eul_A Possible nitrate/nitrit 63.0 23 0.0008 21.6 6.1 114 22-141 16-136 (152)
165 3fht_A ATP-dependent RNA helic 62.8 40 0.0014 24.5 7.8 93 21-120 65-174 (412)
166 4fn4_A Short chain dehydrogena 60.0 41 0.0014 23.5 9.6 59 45-103 30-91 (254)
167 3i2v_A Adenylyltransferase and 59.7 4.3 0.00015 24.7 1.7 34 48-81 74-114 (127)
168 4a4z_A Antiviral helicase SKI2 59.7 29 0.00099 29.5 7.1 61 21-81 55-119 (997)
169 1e0c_A Rhodanese, sulfurtransf 59.1 13 0.00045 25.9 4.4 37 44-80 79-117 (271)
170 3l9o_A ATP-dependent RNA helic 58.7 32 0.0011 29.6 7.2 71 22-103 201-273 (1108)
171 1urh_A 3-mercaptopyruvate sulf 58.6 8.3 0.00028 27.1 3.2 35 45-79 85-121 (280)
172 3hzu_A Thiosulfate sulfurtrans 58.1 14 0.00049 26.6 4.5 36 45-80 110-147 (318)
173 3i42_A Response regulator rece 55.9 28 0.00097 20.3 8.0 110 25-142 7-124 (127)
174 3aay_A Putative thiosulfate su 55.6 25 0.00085 24.5 5.3 37 44-80 224-262 (277)
175 3sxu_A DNA polymerase III subu 55.1 20 0.00068 23.0 4.3 79 33-123 24-104 (150)
176 3aay_A Putative thiosulfate su 55.0 20 0.00069 25.0 4.8 37 44-80 75-113 (277)
177 3e4c_A Caspase-1; zymogen, inf 54.7 57 0.002 23.5 7.2 47 47-94 61-118 (302)
178 1rhs_A Sulfur-substituted rhod 54.4 16 0.00053 26.0 4.1 37 44-80 238-275 (296)
179 1uar_A Rhodanese; sulfurtransf 53.3 15 0.00052 25.8 3.9 36 45-80 78-115 (285)
180 2lci_A Protein OR36; structura 53.3 32 0.0011 20.2 9.6 82 22-103 27-108 (134)
181 2qv0_A Protein MRKE; structura 52.8 35 0.0012 20.4 7.0 110 24-139 12-126 (143)
182 1vlj_A NADH-dependent butanol 52.5 71 0.0024 23.9 9.0 73 31-103 28-108 (407)
183 2wlr_A Putative thiosulfate su 51.6 23 0.00079 26.6 4.8 36 45-80 202-238 (423)
184 3h11_A CAsp8 and FADD-like apo 51.6 8.3 0.00028 27.5 2.2 49 45-94 42-90 (272)
185 4g81_D Putative hexonate dehyd 51.0 60 0.002 22.6 8.3 60 45-104 32-94 (255)
186 3ntd_A FAD-dependent pyridine 51.0 12 0.00041 29.1 3.3 36 45-80 523-558 (565)
187 3hdg_A Uncharacterized protein 50.8 37 0.0013 20.1 5.6 107 25-139 11-124 (137)
188 2j6p_A SB(V)-AS(V) reductase; 50.2 19 0.00065 22.8 3.6 36 46-81 67-111 (152)
189 2ouc_A Dual specificity protei 49.7 8.2 0.00028 23.7 1.8 35 46-80 83-126 (142)
190 2va8_A SSO2462, SKI2-type heli 49.5 46 0.0016 26.7 6.5 77 21-104 47-129 (715)
191 3ics_A Coenzyme A-disulfide re 48.6 16 0.00053 28.7 3.6 36 45-80 540-575 (588)
192 2j48_A Two-component sensor ki 48.4 35 0.0012 19.2 6.6 107 27-139 7-117 (119)
193 3fmp_B ATP-dependent RNA helic 47.2 89 0.003 23.5 9.2 93 21-120 132-241 (479)
194 1rif_A DAR protein, DNA helica 46.0 62 0.0021 22.4 6.1 74 24-104 132-212 (282)
195 1yt8_A Thiosulfate sulfurtrans 46.0 20 0.00068 28.0 3.8 36 45-80 321-357 (539)
196 1m72_A Caspase-1; caspase, cys 45.7 77 0.0026 22.4 8.4 48 47-95 33-93 (272)
197 2dko_A Caspase-3; low barrier 45.5 56 0.0019 20.7 7.9 40 55-95 39-78 (146)
198 3grc_A Sensor protein, kinase; 45.5 46 0.0016 19.8 8.7 111 24-139 9-126 (140)
199 3sir_A Caspase; hydrolase; 2.6 45.4 76 0.0026 22.2 7.0 48 47-95 21-81 (259)
200 2p6r_A Afuhel308 helicase; pro 45.4 22 0.00075 28.6 4.0 76 22-104 42-122 (702)
201 1j5p_A Aspartate dehydrogenase 45.1 75 0.0026 22.3 6.3 60 46-105 60-121 (253)
202 1qtn_A Caspase-8; apoptosis, d 45.1 61 0.0021 21.0 7.5 38 56-94 54-91 (164)
203 3od5_A Caspase-6; caspase doma 44.6 81 0.0028 22.3 7.2 49 45-94 20-82 (278)
204 2wlr_A Putative thiosulfate su 44.5 33 0.0011 25.7 4.7 45 36-80 345-393 (423)
205 2lpm_A Two-component response 44.3 15 0.00051 22.6 2.3 108 25-139 12-121 (123)
206 3ijp_A DHPR, dihydrodipicolina 44.2 85 0.0029 22.4 6.9 64 46-112 88-151 (288)
207 2h54_A Caspase-1; allosteric s 44.1 66 0.0023 21.2 6.9 48 46-94 43-101 (178)
208 2fp3_A Caspase NC; apoptosis, 43.0 71 0.0024 23.1 6.1 48 46-94 61-120 (316)
209 1k68_A Phytochrome response re 42.6 50 0.0017 19.4 6.4 107 27-139 8-130 (140)
210 3s5u_A Putative uncharacterize 42.4 80 0.0027 21.6 7.1 42 39-80 154-200 (220)
211 1okg_A Possible 3-mercaptopyru 42.3 31 0.001 25.6 4.2 37 45-81 94-132 (373)
212 2nn3_C Caspase-1; cysteine pro 42.2 96 0.0033 22.4 6.9 49 46-95 60-121 (310)
213 3p45_A Caspase-6; protease, hu 42.1 73 0.0025 21.1 7.5 50 45-95 43-106 (179)
214 2xgj_A ATP-dependent RNA helic 41.2 55 0.0019 27.9 5.9 61 22-82 103-165 (1010)
215 3qhq_A CSN2, SAG0897 family cr 41.1 86 0.0029 21.6 6.5 41 39-79 154-199 (229)
216 2eg4_A Probable thiosulfate su 41.0 30 0.001 23.4 3.7 33 46-79 61-95 (230)
217 3olh_A MST, 3-mercaptopyruvate 40.9 16 0.00056 26.1 2.4 36 45-80 253-289 (302)
218 1jq5_A Glycerol dehydrogenase; 40.6 1.1E+02 0.0036 22.5 8.4 18 58-75 74-91 (370)
219 3b2n_A Uncharacterized protein 39.8 57 0.002 19.2 5.9 109 26-140 8-123 (133)
220 1yt8_A Thiosulfate sulfurtrans 39.7 40 0.0014 26.2 4.6 36 45-80 62-98 (539)
221 2qsj_A DNA-binding response re 39.1 64 0.0022 19.5 5.6 109 26-140 8-124 (154)
222 3mwd_B ATP-citrate synthase; A 39.0 84 0.0029 23.0 5.9 70 36-106 69-140 (334)
223 3sr3_A Microcin immunity prote 38.3 1.1E+02 0.0039 22.2 7.2 60 45-104 12-87 (336)
224 1t3k_A Arath CDC25, dual-speci 38.3 23 0.00077 22.5 2.6 37 45-81 84-130 (152)
225 3hzu_A Thiosulfate sulfurtrans 37.8 21 0.00072 25.7 2.6 45 36-80 248-295 (318)
226 1t1v_A SH3BGRL3, SH3 domain-bi 37.6 55 0.0019 18.4 4.8 36 57-92 19-54 (93)
227 1qle_D Cytochrome AA3, ccytoch 37.6 18 0.00062 18.0 1.6 20 75-94 3-22 (43)
228 3czc_A RMPB; alpha/beta sandwi 37.4 65 0.0022 19.1 8.6 82 46-134 18-105 (110)
229 1rhs_A Sulfur-substituted rhod 37.0 29 0.001 24.5 3.3 36 45-80 91-130 (296)
230 3r1i_A Short-chain type dehydr 36.8 1E+02 0.0035 21.3 8.5 58 46-103 56-116 (276)
231 3ipz_A Monothiol glutaredoxin- 36.8 64 0.0022 18.9 7.4 47 45-91 16-68 (109)
232 2zj8_A DNA helicase, putative 36.7 18 0.00062 29.2 2.3 76 22-104 41-122 (720)
233 2j32_A Caspase-3; Pro-caspase3 36.4 1.1E+02 0.0036 21.3 8.1 39 56-95 40-78 (250)
234 3tla_A MCCF; serine protease, 36.2 1.3E+02 0.0045 22.3 7.6 60 45-104 42-117 (371)
235 4f3y_A DHPR, dihydrodipicolina 36.1 1.1E+02 0.0038 21.5 6.7 62 47-111 74-135 (272)
236 3fho_A ATP-dependent RNA helic 36.1 78 0.0027 24.3 5.7 91 22-120 160-265 (508)
237 1p9l_A Dihydrodipicolinate red 35.3 1.1E+02 0.0038 21.2 6.9 59 47-105 46-105 (245)
238 2rdm_A Response regulator rece 35.3 67 0.0023 18.7 8.3 111 26-141 10-124 (132)
239 3eqz_A Response regulator; str 35.0 68 0.0023 18.7 8.1 110 26-141 8-126 (135)
240 3s5j_B Ribose-phosphate pyroph 34.8 96 0.0033 22.7 5.7 61 46-110 213-279 (326)
241 3tp9_A Beta-lactamase and rhod 34.4 29 0.00098 26.5 3.0 36 45-80 426-462 (474)
242 1nw9_B Caspase 9, apoptosis-re 34.3 1.2E+02 0.0041 21.3 7.1 48 46-94 21-82 (277)
243 3klo_A Transcriptional regulat 34.0 1E+02 0.0034 20.3 7.4 116 24-141 10-130 (225)
244 3imf_A Short chain dehydrogena 33.7 1.1E+02 0.0038 20.7 8.8 59 45-103 29-90 (257)
245 1rrm_A Lactaldehyde reductase; 33.2 1.4E+02 0.0049 21.9 7.4 72 32-103 17-95 (386)
246 2xw6_A MGS, methylglyoxal synt 33.1 64 0.0022 20.3 3.9 41 64-105 42-83 (134)
247 3ucx_A Short chain dehydrogena 33.1 1.2E+02 0.004 20.8 9.7 59 45-103 34-95 (264)
248 1qwg_A PSL synthase;, (2R)-pho 33.0 1.2E+02 0.0042 21.3 5.7 64 36-99 56-130 (251)
249 1b4b_A Arginine repressor; cor 32.7 54 0.0019 17.9 3.2 39 30-68 21-69 (71)
250 1o2d_A Alcohol dehydrogenase, 32.7 1.5E+02 0.005 21.8 8.5 72 31-103 26-105 (371)
251 3cz5_A Two-component response 32.2 85 0.0029 18.9 7.0 109 26-140 10-125 (153)
252 1okg_A Possible 3-mercaptopyru 32.2 31 0.0011 25.5 2.8 36 46-81 246-282 (373)
253 3h1t_A Type I site-specific re 31.9 1.5E+02 0.005 23.1 6.7 71 22-104 200-282 (590)
254 3dah_A Ribose-phosphate pyroph 31.6 1.3E+02 0.0046 21.8 6.0 60 45-108 215-280 (319)
255 3kht_A Response regulator; PSI 31.6 84 0.0029 18.7 7.8 109 25-139 9-127 (144)
256 1b93_A Protein (methylglyoxal 31.5 98 0.0033 19.9 4.7 41 64-105 50-91 (152)
257 1ta9_A Glycerol dehydrogenase; 31.4 1.7E+02 0.0059 22.2 7.7 71 31-102 76-151 (450)
258 1f1j_A Caspase-7 protease; cas 31.4 1.4E+02 0.0049 21.4 6.1 48 47-95 70-131 (305)
259 1z63_A Helicase of the SNF2/RA 31.0 85 0.0029 23.8 5.2 50 30-80 66-121 (500)
260 2ql9_A Caspase-7; cysteine pro 30.8 1.1E+02 0.0039 20.0 7.1 48 47-95 45-106 (173)
261 4h1h_A LMO1638 protein; MCCF-l 30.6 1.5E+02 0.0052 21.4 7.2 60 45-104 11-86 (327)
262 3hv2_A Response regulator/HD d 30.4 93 0.0032 18.8 7.0 108 24-138 17-131 (153)
263 4dad_A Putative pilus assembly 30.2 90 0.0031 18.6 8.4 117 22-141 21-142 (146)
264 1k8v_A Neuropeptide F; moniezi 30.1 32 0.0011 16.7 1.7 11 127-137 27-37 (40)
265 3gaf_A 7-alpha-hydroxysteroid 29.7 1.3E+02 0.0045 20.4 9.0 58 46-103 36-96 (256)
266 3heb_A Response regulator rece 28.8 98 0.0034 18.6 7.9 112 25-139 8-134 (152)
267 3lyl_A 3-oxoacyl-(acyl-carrier 28.2 1.4E+02 0.0046 20.0 9.7 58 46-103 29-89 (247)
268 2yvq_A Carbamoyl-phosphate syn 28.2 85 0.0029 19.6 4.0 42 64-106 61-106 (143)
269 3sju_A Keto reductase; short-c 27.8 1.5E+02 0.0052 20.4 9.5 58 46-103 48-108 (279)
270 3rkr_A Short chain oxidoreduct 27.2 1.5E+02 0.0051 20.1 9.6 59 46-104 53-114 (262)
271 3qiv_A Short-chain dehydrogena 27.1 1.4E+02 0.0049 20.0 9.6 59 46-104 33-94 (253)
272 3zyw_A Glutaredoxin-3; metal b 27.0 1E+02 0.0035 18.2 7.5 52 36-90 8-65 (111)
273 3a10_A Response regulator; pho 26.9 90 0.0031 17.5 9.6 105 27-138 7-115 (116)
274 4e5s_A MCCFLIKE protein (BA_56 26.7 1.8E+02 0.0063 21.1 7.4 59 46-104 12-86 (331)
275 2b4a_A BH3024; flavodoxin-like 26.6 1E+02 0.0035 18.1 10.8 109 25-140 19-131 (138)
276 4ibo_A Gluconate dehydrogenase 26.6 1.6E+02 0.0054 20.3 8.3 58 46-103 50-110 (271)
277 3tfo_A Putative 3-oxoacyl-(acy 26.3 1.6E+02 0.0055 20.2 9.7 59 45-103 27-88 (264)
278 1c25_A CDC25A; hydrolase, cell 26.1 37 0.0013 21.4 2.0 36 46-81 87-136 (161)
279 3nhm_A Response regulator; pro 25.9 1E+02 0.0035 17.8 9.6 106 25-139 8-121 (133)
280 3v8b_A Putative dehydrogenase, 25.6 1.7E+02 0.0058 20.3 9.2 58 46-103 52-112 (283)
281 2yv1_A Succinyl-COA ligase [AD 25.3 1.8E+02 0.0063 20.6 6.5 67 37-105 62-129 (294)
282 2p5m_A Arginine repressor; alp 24.9 73 0.0025 17.9 3.0 44 25-68 28-81 (83)
283 2ct6_A SH3 domain-binding glut 24.8 1.1E+02 0.0038 17.9 4.1 45 48-92 9-60 (111)
284 1hzm_A Dual specificity protei 24.5 56 0.0019 20.3 2.7 37 45-81 91-137 (154)
285 3tox_A Short chain dehydrogena 24.5 1.8E+02 0.0061 20.1 7.7 58 46-103 32-92 (280)
286 1zl0_A Hypothetical protein PA 24.4 2E+02 0.0069 20.7 6.0 56 48-104 19-88 (311)
287 1pyo_A Caspase-2; apoptosis, c 24.3 1.5E+02 0.0051 19.2 5.7 48 46-94 33-94 (167)
288 3t8y_A CHEB, chemotaxis respon 24.2 1.3E+02 0.0045 18.5 8.2 111 24-140 28-155 (164)
289 3ftp_A 3-oxoacyl-[acyl-carrier 24.1 1.8E+02 0.0061 20.0 8.9 59 45-103 51-112 (270)
290 1vm6_A DHPR, dihydrodipicolina 24.1 1.8E+02 0.0062 20.0 6.4 61 47-110 54-114 (228)
291 3n53_A Response regulator rece 24.0 1.2E+02 0.004 17.8 9.3 106 25-139 7-121 (140)
292 3hzh_A Chemotaxis response reg 23.2 1.3E+02 0.0046 18.2 6.8 111 23-138 38-155 (157)
293 1qb0_A Protein (M-phase induce 22.9 62 0.0021 21.6 2.8 35 46-80 109-157 (211)
294 3ox4_A Alcohol dehydrogenase 2 22.8 2.3E+02 0.0079 20.9 7.9 73 31-103 16-95 (383)
295 2ji4_A Phosphoribosyl pyrophos 22.6 2E+02 0.007 21.3 5.7 60 46-109 272-337 (379)
296 2gax_A Hypothetical protein AT 22.5 1.5E+02 0.0051 18.5 5.9 54 45-98 54-111 (135)
297 3tjr_A Short chain dehydrogena 22.3 2E+02 0.007 20.0 9.6 58 46-103 55-115 (301)
298 1vmd_A MGS, methylglyoxal synt 22.1 1.3E+02 0.0046 19.8 4.1 41 64-105 66-107 (178)
299 1rzw_A Protein AF2095(GR4); be 22.1 1.5E+02 0.005 18.3 5.1 40 36-76 39-78 (123)
300 1xmp_A PURE, phosphoribosylami 22.0 1.8E+02 0.006 19.1 7.2 57 47-103 12-73 (170)
301 2wci_A Glutaredoxin-4; redox-a 21.9 1.5E+02 0.0051 18.3 7.2 56 34-92 25-86 (135)
302 3r2u_A Metallo-beta-lactamase 21.9 19 0.00065 27.5 0.0 37 45-81 424-461 (466)
303 3h7a_A Short chain dehydrogena 21.8 1.9E+02 0.0066 19.5 9.0 58 46-103 31-90 (252)
304 3bfj_A 1,3-propanediol oxidore 21.7 2.4E+02 0.0083 20.7 8.3 71 32-102 19-98 (387)
305 3cg4_A Response regulator rece 21.5 1.3E+02 0.0045 17.6 11.0 110 25-139 11-126 (142)
306 3lte_A Response regulator; str 21.4 1.3E+02 0.0044 17.3 8.0 109 25-141 10-126 (132)
307 1e5d_A Rubredoxin\:oxygen oxid 21.2 2.4E+02 0.0082 20.4 8.5 67 40-109 246-317 (402)
308 3gr1_A Protein PRGH; type III 21.2 2.1E+02 0.0072 19.7 8.0 50 44-96 24-75 (227)
309 3dmq_A RNA polymerase-associat 21.1 54 0.0018 27.7 2.5 71 29-104 179-256 (968)
310 3ce9_A Glycerol dehydrogenase; 20.9 2.4E+02 0.0083 20.4 8.1 49 55-105 74-122 (354)
311 2zfz_A Arginine repressor; DNA 20.8 61 0.0021 18.1 2.0 46 23-68 22-77 (79)
312 1tvm_A PTS system, galactitol- 20.6 1.5E+02 0.005 17.6 5.5 61 47-114 22-88 (113)
313 1oi7_A Succinyl-COA synthetase 20.4 2.3E+02 0.008 20.0 6.7 68 37-106 56-124 (288)
314 3jux_A Protein translocase sub 20.3 3.8E+02 0.013 22.4 7.2 53 26-78 94-152 (822)
315 2yv2_A Succinyl-COA synthetase 20.3 2.4E+02 0.0082 20.0 7.5 67 37-105 62-130 (297)
316 3phc_A Purine nucleoside phosp 20.2 2.3E+02 0.008 19.9 6.2 73 47-119 17-108 (275)
No 1
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=100.00 E-value=6.1e-33 Score=187.60 Aligned_cols=142 Identities=30% Similarity=0.526 Sum_probs=132.4
Q ss_pred hhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 15 RVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 15 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
..++++.+.+..+.. +.|...|.+++.....+++||||++.+.++.+++.|.+.++++..+||++++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 446778999998887 7899999999987777899999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 95 GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 95 ~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
|+..|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.++.++...|...
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 146 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRF 146 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHH
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998776543
No 2
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.5e-33 Score=188.61 Aligned_cols=141 Identities=33% Similarity=0.517 Sum_probs=128.6
Q ss_pred hhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 16 VKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 16 ~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
..+++.++|..++....|...|.+++.....+++||||++.+.++.++..|.+.+..+..+||++++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 45789999999988666999999999887778999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCcccccccCCCcEEEEecCC------CCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 96 RIWILITTELLGRGIDFRTVRLVVNYDFP------SSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 96 ~~~vlv~t~~~~~g~~i~~~~~vi~~~~~------~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
+..|||||+++++|+|+|++++||+++.| .+..+|.||+||+||.|+.|.+++++.+.+.+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 99999999999999999999999999999 89999999999999999999999999887644
No 3
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=7.2e-32 Score=183.84 Aligned_cols=136 Identities=29% Similarity=0.454 Sum_probs=128.2
Q ss_pred hhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 17 KSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 17 ~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
++++.++|..+.. +.|...|.+++.....+++||||++.+.++.++..|...++++..+||++++.+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCG-GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECCh-HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 4678899998887 789999999999877889999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
..|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++.+.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 999999999999999999999999999999999999999999999999999999764
No 4
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-32 Score=186.01 Aligned_cols=139 Identities=36% Similarity=0.610 Sum_probs=125.2
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
+++.++|..++..+.|.+.|.+++.....+++||||++.+.++.++..|.+.+..+..+||+++..+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46888999998855599999999998778899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
.|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++++.+.+..
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 99999999999999999999999999999999999999999999999999999988754
No 5
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.98 E-value=7e-32 Score=185.90 Aligned_cols=143 Identities=31% Similarity=0.531 Sum_probs=118.4
Q ss_pred HhhhhccceeeeecCCCCChHHHHHHHHhcC-CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 14 RRVKSNLARMYRETEGAGSPVQAQDETILLG-IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 14 ~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
....++|.+.+..+.. ..|...|.+++... ...++||||++.+.++.++..|...++.+..+||+++..+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 3456789999998887 68999999999875 567899999999999999999999999999999999999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
++|+..|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++.+.+...
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 157 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 157 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGG
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877654
No 6
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=4.7e-31 Score=185.37 Aligned_cols=134 Identities=28% Similarity=0.534 Sum_probs=122.8
Q ss_pred ceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEE
Q psy576 21 ARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWIL 100 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 100 (159)
.+.+..+.. ..|.+.|.+++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+||
T Consensus 7 ~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCT-TSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCH-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 344444444 7999999999987778899999999999999999999989999999999999999999999999999999
Q ss_pred EEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 101 ITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 101 v~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.|+.++...+.
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~ 140 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRER 140 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGH
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHH
Confidence 9999999999999999999999999999999999999999999999999988763
No 7
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=9.7e-31 Score=181.00 Aligned_cols=137 Identities=28% Similarity=0.556 Sum_probs=124.0
Q ss_pred hhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 15 RVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 15 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
...+++.+.+..+.. ..|...|.+++.. ..+++||||++++.++.+++.|...++++..+||++++.+|..+++.|++
T Consensus 25 ~~~~~i~q~~~~~~~-~~K~~~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 102 (191)
T 2p6n_A 25 AASLDVIQEVEYVKE-EAKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE 102 (191)
T ss_dssp ---CCSEEEEEECCG-GGHHHHHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcCceEEEEEcCh-HHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 456789999988877 6899999999986 35689999999999999999999889999999999999999999999999
Q ss_pred CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 95 GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 95 ~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
|+..|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++|+.+.
T Consensus 103 g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 103 GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp TSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred CCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999876
No 8
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2.8e-30 Score=189.59 Aligned_cols=135 Identities=27% Similarity=0.530 Sum_probs=122.9
Q ss_pred cceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeE
Q psy576 20 LARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWI 99 (159)
Q Consensus 20 i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 99 (159)
+.+++..+.. ..|++.|.+++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 5677777777 789999999998767889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 100 LITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 100 lv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.|+.++...+.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~ 137 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRER 137 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTH
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHH
Confidence 99999999999999999999999999999999999999999999999999998774
No 9
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.94 E-value=1.1e-32 Score=187.52 Aligned_cols=142 Identities=30% Similarity=0.521 Sum_probs=131.7
Q ss_pred hhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 17 KSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 17 ~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
++++.+.+..+.....|...|.+++.....+++||||++.+.++.+++.|...++.+..+||++++.+|..+++.|++|+
T Consensus 1 R~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 1 RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 35678888888876789999999998767789999999999999999999988999999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcccc
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLL 158 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~ 158 (159)
..|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++++...|...+
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~ 142 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 142 (170)
Confidence 99999999999999999999999999999999999999999999999999999988876543
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=1.8e-27 Score=182.84 Aligned_cols=135 Identities=33% Similarity=0.548 Sum_probs=122.4
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
.++.+.+..+.. ..|...|.+++.... .++||||++++.++.+++.|.+.++++..+||+++..+|..+++.|++|+.
T Consensus 274 ~~i~~~~~~~~~-~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 351 (434)
T 2db3_A 274 SDVKQTIYEVNK-YAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 351 (434)
T ss_dssp TTEEEEEEECCG-GGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSC
T ss_pred cccceEEEEeCc-HHHHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 345566666655 578888888887644 459999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
.|||||+++++|+|+|++++||+++.|.+..+|.||+||+||.|+.|.++.|+++.+
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred cEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 999999999999999999999999999999999999999999999999999998543
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.95 E-value=6.2e-28 Score=183.54 Aligned_cols=140 Identities=29% Similarity=0.522 Sum_probs=129.5
Q ss_pred hhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 17 KSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 17 ~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
.+.+.+.+..+.....|...+.+++.....+++||||++.+.++.+++.|.+.+..+..+||+++..+|.++++.|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (410)
T 2j0s_A 247 LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 326 (410)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 34667777777776668999999988767789999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
.+|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++++.+.|..
T Consensus 327 ~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 327 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp SCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred CCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987754
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=180.70 Aligned_cols=139 Identities=32% Similarity=0.549 Sum_probs=124.0
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcC-CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLG-IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
+.+.+.+..+.. ..|...+.+++... ..+++||||++++.++.+++.|.+.+..+..+||+++.++|.++++.|++|+
T Consensus 248 ~~i~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 248 ENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp SSEEEEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred cCceEEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 345555555555 67888888888865 4668999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
.+|||||+++++|+|+|++++||++++|.+...|.||+||+||.|+.|.+++++.+.|.+.
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999887654
No 13
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=181.43 Aligned_cols=139 Identities=34% Similarity=0.587 Sum_probs=115.4
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
..+.+.+........+...+.+++.....+++||||++++.++.+++.|.+.+..+..+||+++..+|.++++.|++|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 331 (414)
T 3eiq_A 252 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSS 331 (414)
T ss_dssp TSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC--
T ss_pred CCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 45667777777777899999999998888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
+|||||+++++|+|+|++++||+++.|.+...|.||+||+||.|+.|.|++++.+.|..
T Consensus 332 ~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 390 (414)
T 3eiq_A 332 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKR 390 (414)
T ss_dssp -CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHH
T ss_pred cEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987654
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.95 E-value=5.1e-27 Score=177.87 Aligned_cols=137 Identities=29% Similarity=0.508 Sum_probs=124.9
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.+.+++..... ..|...+..++.....+++||||++.+.++.+++.|.+.+..+..+||+++..+|..+++.|++|+..
T Consensus 232 ~~~~~~~~~~~-~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 310 (400)
T 1s2m_A 232 GITQYYAFVEE-RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 310 (400)
T ss_dssp TEEEEEEECCG-GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS
T ss_pred CceeEEEEech-hhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 44455555544 67888888888877778999999999999999999998899999999999999999999999999999
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.|+++++..|..
T Consensus 311 vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~ 368 (400)
T 1s2m_A 311 TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 368 (400)
T ss_dssp EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHH
Confidence 9999999999999999999999999999999999999999999999999999887653
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.94 E-value=2e-26 Score=173.91 Aligned_cols=135 Identities=29% Similarity=0.468 Sum_probs=123.2
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.+.+.+..... ..|...+.+++.....+++||||++.+.++.+++.|.+.+..+..+||+++..+|.++++.|++|+..
T Consensus 224 ~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 302 (391)
T 1xti_A 224 GLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 302 (391)
T ss_dssp TCEEEEEECCG-GGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS
T ss_pred cceEEEEEcCc-hhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc
Confidence 34445555444 67888888888877788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.+++++.+.+
T Consensus 303 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999998653
No 16
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.94 E-value=1e-26 Score=175.35 Aligned_cols=137 Identities=37% Similarity=0.670 Sum_probs=125.6
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
..+.+.+........+...+..++.....+++||||++++.++.+++.|++.+..+..+||+++..+|.++++.|++|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 294 (395)
T 3pey_A 215 DAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRS 294 (395)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred ccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 45556666666666788888888887778899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCCC------CHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFPS------SAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~~------~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+|||||+++++|+|+|++++||+++.|+ +..+|.||+||+||.|+.|.+++++.+.+
T Consensus 295 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 295 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 9999999999999999999999999998 99999999999999999999999998643
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=1e-26 Score=182.32 Aligned_cols=125 Identities=25% Similarity=0.431 Sum_probs=118.0
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
..+...+.+++....++++||||++++.++.+++.|.+.++.+..+||++++++|..+++.|.+|+..|||||+++++|+
T Consensus 221 ~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 56778888888876778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 111 DFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 111 ~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|+|++++||+++.|.+...|.|++||+||.|.+|.+++++.+.|.
T Consensus 301 D~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred CccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 999999999999999999999999999999999999999977654
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=1.1e-26 Score=176.22 Aligned_cols=138 Identities=29% Similarity=0.476 Sum_probs=125.3
Q ss_pred hhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 17 KSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 17 ~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
...+.+.+........+...+.+++.....+++||||++.+.++.+++.|.+.+..+..+||+++..+|..+++.|++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 316 (412)
T 3fht_A 237 LDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 316 (412)
T ss_dssp CTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC
Confidence 34556666666666778888888888777789999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCC------CCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFP------SSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~------~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
.+|||||+++++|+|+|++++||+++.| .+..+|.||+||+||.|+.|.++++++..+
T Consensus 317 ~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 317 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp CSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 9999999999999999999999999999 467999999999999999999999997653
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=4.3e-26 Score=170.44 Aligned_cols=136 Identities=35% Similarity=0.590 Sum_probs=123.6
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.+.+.+..... ..+...+.+++.. ...++||||++.+.++.+++.|.+.+..+..+||+++..+|.++++.|++|+..
T Consensus 213 ~~~~~~~~~~~-~~~~~~l~~~l~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 290 (367)
T 1hv8_A 213 NIEQSYVEVNE-NERFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 290 (367)
T ss_dssp SSEEEEEECCG-GGHHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred CceEEEEEeCh-HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe
Confidence 44555555554 6788888888874 677899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
|||||+++++|+|+|++++||+++.|++..+|.||+||+||.|+.|.++.++++.|..
T Consensus 291 vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 348 (367)
T 1hv8_A 291 ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYK 348 (367)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHH
T ss_pred EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988754
No 20
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.93 E-value=4.7e-26 Score=180.68 Aligned_cols=123 Identities=20% Similarity=0.321 Sum_probs=112.9
Q ss_pred hHHHHHHHHhc-CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 33 PVQAQDETILL-GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 33 k~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
+...+.+++.. ..++++||||++++.++.+++.|.+.++.+..+||+|++.+|..+++.|.+|+..|||||+++++|+|
T Consensus 253 ~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID 332 (591)
T 2v1x_A 253 FIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 332 (591)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCC
T ss_pred HHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCC
Confidence 34556666653 35678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 112 FRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 112 i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
+|++++||++++|.+...|.|++||+||.|.+|.|++++...|.
T Consensus 333 ~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 333 KPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp CSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred cccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 99999999999999999999999999999999999999987654
No 21
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.93 E-value=1.5e-25 Score=176.76 Aligned_cols=114 Identities=31% Similarity=0.532 Sum_probs=107.6
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN 120 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~ 120 (159)
....++||||++++.++.++..|.+. +..+..+||++++.+|..+++.|++|+..|||||+++++|+|+|++++||+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE
Confidence 45678999999999999999999876 888999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 121 YDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 121 ~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
+++|.+...|.||+||+||.|..|.+++++.+.|...
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~ 453 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF 453 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHH
T ss_pred ECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHH
Confidence 9999999999999999999999999999999877543
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=2.6e-25 Score=176.26 Aligned_cols=113 Identities=31% Similarity=0.531 Sum_probs=107.3
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN 120 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~ 120 (159)
....++||||++.+.++.+++.|.+. +..+..+||+++..+|..+++.|++|+..|||||+++++|+|+|++++||+
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~ 365 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 365 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE
Confidence 45678999999999999999999876 888999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 121 YDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 121 ~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
+++|.+...|.||+||+||.|+.|.|++++.+.|..
T Consensus 366 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 401 (579)
T 3sqw_A 366 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP 401 (579)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred cCCCCCHHHhhhhccccccCCCCceEEEEEcccHHH
Confidence 999999999999999999999999999999987754
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.92 E-value=3.5e-27 Score=178.10 Aligned_cols=141 Identities=35% Similarity=0.605 Sum_probs=0.0
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
+.+.+.+..+.....+...+.+++.....+++||||++++.++.+++.|++.+..+..+||+++..+|.++++.|++|+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 310 (394)
T 1fuu_A 231 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 310 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCC
Confidence 34455555555555577778888877677899999999999999999999888999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcccc
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLL 158 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~ 158 (159)
.|||||+++++|+|+|++++||++++|.+...|.||+||+||.|+.|.|++++.+.|...+
T Consensus 311 ~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 311 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAM 371 (394)
T ss_dssp -------------------------------------------------------------
T ss_pred cEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998876543
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.92 E-value=7.7e-27 Score=181.10 Aligned_cols=138 Identities=29% Similarity=0.473 Sum_probs=0.0
Q ss_pred hhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 17 KSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 17 ~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
...+.+.+..+.....+...+..++.....+++||||++.+.++.++..|...+..+..+||+++..+|..+++.|++|+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~ 383 (479)
T 3fmp_B 304 LDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 383 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCC
Confidence 34555666666666778888888887767789999999999999999999988999999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCC------CHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPS------SAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~------~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
.+|||||+++++|+|+|++++||++++|. +...|.||+||+||.|..|.+++++++.+
T Consensus 384 ~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 384 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 99999999999999999999999999994 56899999999999999999999998665
No 25
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.9e-24 Score=166.21 Aligned_cols=126 Identities=28% Similarity=0.421 Sum_probs=114.7
Q ss_pred CCCChHHHHHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEec--------CCCHHHHHHHHHHHhcCC
Q psy576 29 GAGSPVQAQDETILL----GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHS--------DRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 29 ~~~~k~~~l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~~~ 96 (159)
....|...+.+++.. ..++++||||++++.++.+++.|...++++..+|| +++..+|.++++.|++|+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 446788888888875 57889999999999999999999999999999999 999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
..|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+ |.++.++..++.
T Consensus 420 ~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 420 FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp CSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999998 999999987753
No 26
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=9.6e-24 Score=156.18 Aligned_cols=128 Identities=32% Similarity=0.552 Sum_probs=110.4
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.+.+.+...... . ....+.+.....+++||||++.+.++.+++.|. ++..+||+++..+|.++++.|++|+.+
T Consensus 196 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~ 268 (337)
T 2z0m_A 196 NVEHKFVHVKDD-W--RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD 268 (337)
T ss_dssp GEEEEEEECSSS-S--HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CceEEEEEeChH-H--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc
Confidence 444445444442 2 223355666677899999999999999999886 478999999999999999999999999
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++|+. .|
T Consensus 269 vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~ 323 (337)
T 2z0m_A 269 MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NE 323 (337)
T ss_dssp EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SC
T ss_pred EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-Cc
Confidence 99999999999999999999999999999999999999999999999999998 44
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.6e-25 Score=173.84 Aligned_cols=137 Identities=32% Similarity=0.560 Sum_probs=100.9
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
+.+.+.+........+...+.+++.....+++||||++++.++.++..|.+.+..+..+||+++..+|..+++.|++|+.
T Consensus 329 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~ 408 (508)
T 3fho_A 329 EGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTS 408 (508)
T ss_dssp -CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSC
T ss_pred ccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCC
Confidence 34556666666666788888888887778899999999999999999999889999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCC------CCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFP------SSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~------~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+|||||+++++|+|+|++++||+++.| .+...|.||+||+||.|+.|.+++++.+.+
T Consensus 409 ~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 409 KVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp CCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred eEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 999999999999999999999999999 789999999999999999999999998543
No 28
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.90 E-value=9.8e-24 Score=153.00 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=97.2
Q ss_pred CCCChHHHHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhC-CCceEEEecCCCHHHHHHHHHHHhcC-Cee-EEEEe
Q psy576 29 GAGSPVQAQDETILLG--IEPPVLVFVQSKERAQELYNELIYD-GINVDVIHSDRTQKQRDNVVRSFRTG-RIW-ILITT 103 (159)
Q Consensus 29 ~~~~k~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vlv~t 103 (159)
....|+..|.+++... .+.++||||.+...++.+...|.+. ++++..+||+++..+|.++++.|+++ +.. +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3467999988888754 6789999999999999999999875 88999999999999999999999998 666 78899
Q ss_pred CCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceE--EEEecC
Q psy576 104 ELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKA--VTFFTK 152 (159)
Q Consensus 104 ~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~--~~~~~~ 152 (159)
+++++|+|++.+++||++++||++..|.|++||++|.|+.+.+ +.++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999999999987765 444443
No 29
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.90 E-value=6.6e-24 Score=166.60 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC------------CCceEEEecCCCHHHHHHHHHHHh
Q psy576 30 AGSPVQAQDETILL----GIEPPVLVFVQSKERAQELYNELIYD------------GINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 30 ~~~k~~~l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
...|...|.+++.. ..+.++||||++++.++.+++.|.+. |.....+||+++..+|.++++.|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 36788888888863 56789999999999999999999765 444556678899999999999999
Q ss_pred c-CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 94 T-GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 94 ~-~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+ |+.+|||||+++++|+|+|++++||+|++|+++..|.||+|| ||. ..|.++.++...+
T Consensus 450 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 450 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp ----CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHH
T ss_pred ccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 9 999999999999999999999999999999999999999999 999 7899999987654
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.88 E-value=2.1e-22 Score=153.54 Aligned_cols=112 Identities=28% Similarity=0.433 Sum_probs=101.3
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceE-EEecCCCHHHHHHHHHHHhcCCeeEEEE----eCCc
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVD-VIHSDRTQKQRDNVVRSFRTGRIWILIT----TELL 106 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vlv~----t~~~ 106 (159)
.+...+.+++.. .++++||||++++.++.++..|...++++. .+||. +|. ++.|++|+.+|||| |+++
T Consensus 239 ~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~ 311 (414)
T 3oiy_A 239 RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKL 311 (414)
T ss_dssp CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCC
T ss_pred CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchh
Confidence 467777777776 458999999999999999999999999998 88984 333 99999999999999 9999
Q ss_pred ccccccCC-CcEEEEecCC--CCHHHHHHHHhhccCCC----CcceEEEEe
Q psy576 107 GRGIDFRT-VRLVVNYDFP--SSAISYIHRIGRAGRGG----REGKAVTFF 150 (159)
Q Consensus 107 ~~g~~i~~-~~~vi~~~~~--~~~~~~~q~~GR~~R~g----~~g~~~~~~ 150 (159)
++|+|+|+ +++||+++.| .+..+|.||+||+||.| ..|.+++++
T Consensus 312 ~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 312 TRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred hccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999999 9999999999 99999999999999988 479999988
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=162.58 Aligned_cols=121 Identities=21% Similarity=0.378 Sum_probs=96.7
Q ss_pred CChHHHHHHHHh----cCC-CCCEEEEecchHHHHHHHHHHHhC------CCceEEEecC--------CCHHHHHHHHHH
Q psy576 31 GSPVQAQDETIL----LGI-EPPVLVFVQSKERAQELYNELIYD------GINVDVIHSD--------RTQKQRDNVVRS 91 (159)
Q Consensus 31 ~~k~~~l~~~~~----~~~-~~~~lif~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~ 91 (159)
..|...|.+++. ... .+++||||++++.++.++++|... ++++..+||+ |+..+|.++++.
T Consensus 380 ~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 380 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 345555555544 223 789999999999999999999876 7899999999 999999999999
Q ss_pred HhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 92 FRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 92 f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
|++|+.+|||||+++++|+|+|++++||+|++|+++..|.||+||+||.| +.++++....
T Consensus 460 F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 460 FRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp HCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred HhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 99999999999999999999999999999999999999999999976654 4444444433
No 32
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.88 E-value=3.5e-23 Score=159.32 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=89.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN---- 120 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~---- 120 (159)
.+++++|||++++.++.+++.|++.+.++..+|| ++|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~ 250 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTA 250 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCcc
Confidence 3678999999999999999999999999999999 3678899999999999999999999999999 999886
Q ss_pred ---------------ecCCCCHHHHHHHHhhccCC-CCcceEEEEe---cCCCcc
Q psy576 121 ---------------YDFPSSAISYIHRIGRAGRG-GREGKAVTFF---TKQDAP 156 (159)
Q Consensus 121 ---------------~~~~~~~~~~~q~~GR~~R~-g~~g~~~~~~---~~~~~~ 156 (159)
++.|.+..+|.||+||+||. |.+|.|++++ .+.|..
T Consensus 251 ~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~ 305 (440)
T 1yks_A 251 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAH 305 (440)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTT
T ss_pred ceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhh
Confidence 88899999999999999998 5789999997 444443
No 33
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.88 E-value=1.5e-23 Score=164.39 Aligned_cols=123 Identities=23% Similarity=0.341 Sum_probs=88.5
Q ss_pred CCChHHHHHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhCC----C--------ceEEEecCCCHHHHHHHHHHHh
Q psy576 30 AGSPVQAQDETILL----GIEPPVLVFVQSKERAQELYNELIYDG----I--------NVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 30 ~~~k~~~l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~~----~--------~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
...|...|.+++.. ...+++||||++++.++.++..|...+ + ....+||+|+..+|.++++.|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 46788888877764 466899999999999999999998763 2 3445566999999999999999
Q ss_pred c-CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 94 T-GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 94 ~-~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+ |+.+|||||+++++|+|+|++++||+|++|+++..|.||+|| ||. ..|.++.++.+.+
T Consensus 449 ~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 508 (555)
T 3tbk_A 449 ASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSAD 508 (555)
T ss_dssp ---CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHH
T ss_pred cCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCC
Confidence 9 999999999999999999999999999999999999999999 898 8899999987654
No 34
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.88 E-value=2.3e-22 Score=167.03 Aligned_cols=121 Identities=22% Similarity=0.255 Sum_probs=112.9
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHh-CCCceEEEecCCCHHHHHHHHHHHhcCC--eeEEEEeCCcc
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIY-DGINVDVIHSDRTQKQRDNVVRSFRTGR--IWILITTELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~t~~~~ 107 (159)
..|...|.+++....++++||||++++.++.++..|.. .++++..+||+|+..+|..+++.|++|+ ..|||||++++
T Consensus 488 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~ 567 (968)
T 3dmq_A 488 DPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGS 567 (968)
T ss_dssp SHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTT
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhh
Confidence 56899999999887788999999999999999999985 4899999999999999999999999998 99999999999
Q ss_pred cccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEec
Q psy576 108 RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 108 ~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
+|+|+|.+++||++++|+++..|.|++||+||.|+.+.++++..
T Consensus 568 ~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 568 EGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp CSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred cCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999999999999999999999999999998887666643
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.88 E-value=1.7e-23 Score=168.60 Aligned_cols=124 Identities=21% Similarity=0.343 Sum_probs=79.5
Q ss_pred CCChHHHHHHHHhcC----CCCCEEEEecchHHHHHHHHHHHhCC----CceEEE--------ecCCCHHHHHHHHHHHh
Q psy576 30 AGSPVQAQDETILLG----IEPPVLVFVQSKERAQELYNELIYDG----INVDVI--------HSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 30 ~~~k~~~l~~~~~~~----~~~~~lif~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~ 93 (159)
...|...|.+++... .++++||||++++.++.+++.|...+ +++..+ ||+|+.++|.++++.|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 467888888888653 56789999999999999999999886 788888 55999999999999999
Q ss_pred c-CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 94 T-GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 94 ~-~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
+ |+.+|||||+++++|+|+|++++||+|++|+++..|.||+|| ||. +.|.++.++...+.
T Consensus 458 ~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 458 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 518 (696)
T ss_dssp ---CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHH
T ss_pred hcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCH
Confidence 8 999999999999999999999999999999999999999999 998 78899998876543
No 36
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.88 E-value=8.3e-23 Score=167.04 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=74.4
Q ss_pred CCChHHHHHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC------------CCceEEEecCCCHHHHHHHHHHHh
Q psy576 30 AGSPVQAQDETILL----GIEPPVLVFVQSKERAQELYNELIYD------------GINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 30 ~~~k~~~l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
...|...|.+++.. ..+.++||||++++.++.++.+|.+. |.....+||+|+..+|.++++.|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 36788888888864 56789999999999999999999763 445566788899999999999999
Q ss_pred c-CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 94 T-GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 94 ~-~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+ |+.+|||||+++++|+|+|++++||+|++|+++..|.||+|| ||. ..|.++.++...+
T Consensus 691 ~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp ---CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHH
T ss_pred ccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 9 999999999999999999999999999999999999999999 999 7899999987654
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.88 E-value=2.6e-22 Score=162.03 Aligned_cols=123 Identities=23% Similarity=0.280 Sum_probs=108.1
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+++.. ..+.++||||+|++.++.++..|.+.++++..+||+++..++..+.++++.| .|+|||+++++
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgR 492 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGR 492 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSST
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCcccc
Confidence 5677777777753 2467899999999999999999999999999999998877776555555555 69999999999
Q ss_pred ccccC--------CCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 109 GIDFR--------TVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 109 g~~i~--------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|+||+ +..+||+++.|.+...|.||+||+||.|.+|.++.|++..|.
T Consensus 493 G~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 493 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred CcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 99999 788999999999999999999999999999999999987763
No 38
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=1.3e-21 Score=157.10 Aligned_cols=124 Identities=29% Similarity=0.390 Sum_probs=110.1
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
.++...+...+.. ..+.++||||+|+..++.+++.|.+.++++..+||+++..+|.++++.|++|+..|||||+++++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~ 507 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCST
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhC
Confidence 3444444444432 25678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEecC-----CCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 109 GIDFRTVRLVVNYDF-----PSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 109 g~~i~~~~~vi~~~~-----~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|+|+|++++||+++. |.+..+|.||+||+||. ..|.+++++++.+.
T Consensus 508 GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 508 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp TCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCH
T ss_pred CcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCH
Confidence 999999999999987 89999999999999998 68999999987654
No 39
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.87 E-value=1.3e-21 Score=157.17 Aligned_cols=124 Identities=27% Similarity=0.335 Sum_probs=109.8
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
.++...+...+.. ..+.++||||+|+..++.+++.|.+.++++..+||+++..+|.++++.|++|+..|||||+++++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~ 501 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLRE 501 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCT
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhc
Confidence 3445555444432 24678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEecC-----CCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 109 GIDFRTVRLVVNYDF-----PSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 109 g~~i~~~~~vi~~~~-----~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|+|+|++++||+++. |.+..+|.||+||+||.+ .|.++++++..+.
T Consensus 502 GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 502 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp TCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 999999999999987 889999999999999995 7999999887654
No 40
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.87 E-value=2.4e-22 Score=155.13 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=94.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEec--
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYD-- 122 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~-- 122 (159)
..+++||||++++.++.+++.|.+.++.+..+||++. .++++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 3568999999999999999999999999999999753 46899999999999999999999999999 9999988
Q ss_pred ------------------CCCCHHHHHHHHhhccCCCC-cceEEEEecCC
Q psy576 123 ------------------FPSSAISYIHRIGRAGRGGR-EGKAVTFFTKQ 153 (159)
Q Consensus 123 ------------------~~~~~~~~~q~~GR~~R~g~-~g~~~~~~~~~ 153 (159)
.|.+..+|.||+||+||.|. +|.+++|....
T Consensus 262 ~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999997 78888887544
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.87 E-value=3.1e-22 Score=159.49 Aligned_cols=107 Identities=23% Similarity=0.260 Sum_probs=96.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEE------
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLV------ 118 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~v------ 118 (159)
..+++||||++++.++.+++.|.+.+.++..+||. +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 36789999999999999999999999999999984 677899999999999999999999999997 8877
Q ss_pred --------------EEecCCCCHHHHHHHHhhccCCCC-cceEEEEec---CCCcc
Q psy576 119 --------------VNYDFPSSAISYIHRIGRAGRGGR-EGKAVTFFT---KQDAP 156 (159)
Q Consensus 119 --------------i~~~~~~~~~~~~q~~GR~~R~g~-~g~~~~~~~---~~~~~ 156 (159)
++++.|.+..+|.||+||+||.|. .|.+++|+. +.|..
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~ 484 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDED 484 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTT
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHH
Confidence 777889999999999999999974 899999997 55543
No 42
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.87 E-value=1.3e-22 Score=156.94 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=93.3
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE-----
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN----- 120 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----- 120 (159)
.+++||||++++.++.+++.|+..+.++..+||. +|.++++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 6789999999999999999999999999999985 6777899999999999999999999999999 99998
Q ss_pred ---------------ecCCCCHHHHHHHHhhccCCCC-cceEEEEecCC
Q psy576 121 ---------------YDFPSSAISYIHRIGRAGRGGR-EGKAVTFFTKQ 153 (159)
Q Consensus 121 ---------------~~~~~~~~~~~q~~GR~~R~g~-~g~~~~~~~~~ 153 (159)
++.|.+..+|.||+||+||.|. .|.+++|+...
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6699999999999999999996 89999999876
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.87 E-value=4.3e-22 Score=165.05 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=75.1
Q ss_pred CCChHHHHHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC------------CCceEEEecCCCHHHHHHHHHHHh
Q psy576 30 AGSPVQAQDETILL----GIEPPVLVFVQSKERAQELYNELIYD------------GINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 30 ~~~k~~~l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
...|...|.+++.. ..+.++||||++++.++.++++|.+. |.....+||+|+..+|.++++.|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 46788888888864 45689999999999999999999876 444556688899999999999999
Q ss_pred c-CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 94 T-GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 94 ~-~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+ |+.+|||||+++++|+|+|++++||+|++|+++..|.||+|| ||. ..|.++.++...+
T Consensus 691 ~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp ---CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHH
T ss_pred ccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 9 999999999999999999999999999999999999999999 998 6788998887643
No 44
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.86 E-value=2.9e-21 Score=153.75 Aligned_cols=122 Identities=26% Similarity=0.327 Sum_probs=106.0
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+.. ..+.|+||||+|++.++.++..|.+.++++..+||+....++..+..+++.| .|+|||+++++
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgR 534 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGR 534 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTT
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhC
Confidence 5688888877764 2567999999999999999999999999999999986555555555556555 59999999999
Q ss_pred ccccC--------CCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 109 GIDFR--------TVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 109 g~~i~--------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|+||+ +..+||+++.|.+...|.|++||+||.|.+|.++.|++..|
T Consensus 535 GtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 535 GTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred CcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 99998 56799999999999999999999999999999999998876
No 45
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.86 E-value=3.9e-21 Score=155.58 Aligned_cols=121 Identities=20% Similarity=0.341 Sum_probs=101.5
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCC------------------------------------CceEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDG------------------------------------INVDV 75 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~------------------------------------~~~~~ 75 (159)
.+...+.+.+. .++++||||+++++++.++..|.+.. ..+.+
T Consensus 240 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 240 AIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp HHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 34444555554 56899999999999999999987541 24899
Q ss_pred EecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----ec-------CCCCHHHHHHHHhhccCCC--C
Q psy576 76 IHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN----YD-------FPSSAISYIHRIGRAGRGG--R 142 (159)
Q Consensus 76 ~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~~-------~~~~~~~~~q~~GR~~R~g--~ 142 (159)
+||+++.++|..+++.|.+|+.+|||||+++++|+|+|++++||+ |+ .|.+..+|.||+||+||.| .
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~ 397 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQ 397 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCS
T ss_pred ECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 999999999999999999999999999999999999999999998 88 7899999999999999988 4
Q ss_pred cceEEEEecCCC
Q psy576 143 EGKAVTFFTKQD 154 (159)
Q Consensus 143 ~g~~~~~~~~~~ 154 (159)
.|.|++++...+
T Consensus 398 ~G~~~~l~~~~~ 409 (715)
T 2va8_A 398 IGESIVVVRDKE 409 (715)
T ss_dssp CEEEEEECSCGG
T ss_pred CceEEEEeCCch
Confidence 799999987665
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.86 E-value=6.2e-22 Score=158.87 Aligned_cols=101 Identities=22% Similarity=0.260 Sum_probs=94.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN---- 120 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~---- 120 (159)
..+++||||++++.++.+++.|++.+.++..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~ 483 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKS 483 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCc
Confidence 56799999999999999999999999999999993 788899999999999999999999999999 999997
Q ss_pred ----------------ecCCCCHHHHHHHHhhccCC-CCcceEEEEe
Q psy576 121 ----------------YDFPSSAISYIHRIGRAGRG-GREGKAVTFF 150 (159)
Q Consensus 121 ----------------~~~~~~~~~~~q~~GR~~R~-g~~g~~~~~~ 150 (159)
++.|.+.++|.||+||+||. |++|.|++|+
T Consensus 484 ~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 484 VKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp CCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred ccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 56889999999999999999 6889999996
No 47
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.86 E-value=3.8e-21 Score=155.73 Aligned_cols=122 Identities=25% Similarity=0.323 Sum_probs=106.6
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC---------------------------------CCceEEEe
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD---------------------------------GINVDVIH 77 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~ 77 (159)
..+...+.+.+. .++++||||++++.++.++..|.+. ...+.++|
T Consensus 224 ~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 224 SSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp SSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred hHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 455666666665 4689999999999999999888642 12489999
Q ss_pred cCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----ec----CCCCHHHHHHHHhhccCCC--CcceEE
Q psy576 78 SDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN----YD----FPSSAISYIHRIGRAGRGG--REGKAV 147 (159)
Q Consensus 78 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~~----~~~~~~~~~q~~GR~~R~g--~~g~~~ 147 (159)
|++++++|..+++.|++|+.+|||||+++++|+|+|++++||+ |+ .|.+..+|.||+||+||.| ..|.|+
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 55 5889999999999999988 478999
Q ss_pred EEecCCC
Q psy576 148 TFFTKQD 154 (159)
Q Consensus 148 ~~~~~~~ 154 (159)
+++...+
T Consensus 382 ~l~~~~~ 388 (720)
T 2zj8_A 382 IVSTSDD 388 (720)
T ss_dssp EECSSSC
T ss_pred EEecCcc
Confidence 9998776
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.86 E-value=4.8e-22 Score=153.84 Aligned_cols=118 Identities=21% Similarity=0.408 Sum_probs=104.9
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
..|...+.+++....++++||||++.+.++.+++.|. +..+||+++..+|.++++.|++|+.+|||||+++++|+
T Consensus 334 ~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gl 408 (472)
T 2fwr_A 334 KNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 408 (472)
T ss_dssp SHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred hHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCc
Confidence 4677888888887778899999999999999999884 56899999999999999999999999999999999999
Q ss_pred ccCCCcEEEEecCCCCHHHHHHHHhhccCCCCc-ceEE--EEecCC
Q psy576 111 DFRTVRLVVNYDFPSSAISYIHRIGRAGRGGRE-GKAV--TFFTKQ 153 (159)
Q Consensus 111 ~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~-g~~~--~~~~~~ 153 (159)
|+|++++||+++.|+++..|.|++||+||.|+. +.++ .++..+
T Consensus 409 dlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 409 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred ccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999854 4444 445443
No 49
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.85 E-value=6.1e-21 Score=153.93 Aligned_cols=123 Identities=26% Similarity=0.285 Sum_probs=110.6
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+.. ..+.|+||||.|++.++.++..|.+.++++..+||++...++..+.++|+.| .|+|||++++|
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgR 501 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGR 501 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccC
Confidence 5788888887753 3567899999999999999999999999999999998888887777888888 69999999999
Q ss_pred ccccCCC-------------------------------------cEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEec
Q psy576 109 GIDFRTV-------------------------------------RLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 109 g~~i~~~-------------------------------------~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
|+||+.. .+||+++.|.+...|.|++||+||.|.+|.++.|++
T Consensus 502 GtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls 581 (853)
T 2fsf_A 502 GTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLS 581 (853)
T ss_dssp CSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEec
Confidence 9999873 599999999999999999999999999999999998
Q ss_pred CCCc
Q psy576 152 KQDA 155 (159)
Q Consensus 152 ~~~~ 155 (159)
..|.
T Consensus 582 ~eD~ 585 (853)
T 2fsf_A 582 MEDA 585 (853)
T ss_dssp TTSG
T ss_pred ccHH
Confidence 7763
No 50
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.4e-21 Score=159.18 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCC---------------------------------------ceEE
Q psy576 35 QAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGI---------------------------------------NVDV 75 (159)
Q Consensus 35 ~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~ 75 (159)
..+.+.+......++||||++++.++.++..|...++ .+.+
T Consensus 332 ~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~ 411 (1010)
T 2xgj_A 332 YKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 411 (1010)
T ss_dssp HHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeE
Confidence 3344545444566999999999999999998865332 2789
Q ss_pred EecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----ecC----CCCHHHHHHHHhhccCCCC--cce
Q psy576 76 IHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN----YDF----PSSAISYIHRIGRAGRGGR--EGK 145 (159)
Q Consensus 76 ~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~~~----~~~~~~~~q~~GR~~R~g~--~g~ 145 (159)
+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+. |.++.+|.||+||+||.|. .|.
T Consensus 412 ~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~ 491 (1010)
T 2xgj_A 412 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGI 491 (1010)
T ss_dssp ESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEE
T ss_pred ECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceE
Confidence 999999999999999999999999999999999999999999998 888 8899999999999999995 599
Q ss_pred EEEEecCC
Q psy576 146 AVTFFTKQ 153 (159)
Q Consensus 146 ~~~~~~~~ 153 (159)
|++++.+.
T Consensus 492 vi~l~~~~ 499 (1010)
T 2xgj_A 492 VIMMIDEK 499 (1010)
T ss_dssp EEEEECSC
T ss_pred EEEEECCC
Confidence 99999865
No 51
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.85 E-value=5.7e-21 Score=154.34 Aligned_cols=120 Identities=27% Similarity=0.376 Sum_probs=104.9
Q ss_pred hHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC------------------------------CCceEEEecCCCH
Q psy576 33 PVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD------------------------------GINVDVIHSDRTQ 82 (159)
Q Consensus 33 k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~------------------------------~~~~~~~~~~~~~ 82 (159)
+...+.+.+. .++++||||++++.++.++..|.+. +..+.++||++++
T Consensus 231 ~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 308 (702)
T 2p6r_A 231 FEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 308 (702)
T ss_dssp HHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred HHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCH
Confidence 4555666665 5689999999999999999888642 1347899999999
Q ss_pred HHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----ec---CCCCHHHHHHHHhhccCCC--CcceEEEEecCC
Q psy576 83 KQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN----YD---FPSSAISYIHRIGRAGRGG--REGKAVTFFTKQ 153 (159)
Q Consensus 83 ~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~~---~~~~~~~~~q~~GR~~R~g--~~g~~~~~~~~~ 153 (159)
++|..+++.|++|+.+|||||+++++|+|+|++++||+ |+ .|.+..+|.||+||+||.| ..|.|++++...
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 99999999999999999999999999999999999998 55 6889999999999999998 479999998876
Q ss_pred C
Q psy576 154 D 154 (159)
Q Consensus 154 ~ 154 (159)
+
T Consensus 389 ~ 389 (702)
T 2p6r_A 389 D 389 (702)
T ss_dssp G
T ss_pred c
Confidence 5
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.85 E-value=3e-21 Score=148.20 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=92.1
Q ss_pred HHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcE
Q psy576 38 DETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRL 117 (159)
Q Consensus 38 ~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~ 117 (159)
.+++.. ..++++|||++++.++.+++.|++.+.++..+||+ +|.++++.|++|+.+|||||+++++|+|+|...+
T Consensus 164 ~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip~~~V 238 (431)
T 2v6i_A 164 YEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFKADRV 238 (431)
T ss_dssp CHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEE
T ss_pred HHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccCCcEE
Confidence 344544 36689999999999999999999989999999996 5778999999999999999999999999994332
Q ss_pred ----------------EEEecCCCCHHHHHHHHhhccCCCC-cceEEEEe
Q psy576 118 ----------------VVNYDFPSSAISYIHRIGRAGRGGR-EGKAVTFF 150 (159)
Q Consensus 118 ----------------vi~~~~~~~~~~~~q~~GR~~R~g~-~g~~~~~~ 150 (159)
+++++.|.+..+|.||+||+||.|. ++.++++.
T Consensus 239 I~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 239 IDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 5778899999999999999999985 45555554
No 53
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.85 E-value=8.7e-22 Score=160.27 Aligned_cols=115 Identities=19% Similarity=0.311 Sum_probs=103.6
Q ss_pred HHHhcCCCCCEEEEecchHHHHHHHHHHHh-----------CCCceEEEecCCCHHHHHHHHHHHh-----cCCeeEEEE
Q psy576 39 ETILLGIEPPVLVFVQSKERAQELYNELIY-----------DGINVDVIHSDRTQKQRDNVVRSFR-----TGRIWILIT 102 (159)
Q Consensus 39 ~~~~~~~~~~~lif~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~vlv~ 102 (159)
++......+++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|. +|+.+||||
T Consensus 296 ~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVA 375 (773)
T 2xau_A 296 QIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIS 375 (773)
T ss_dssp HHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEE
T ss_pred HHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEe
Confidence 333344678999999999999999999875 4678999999999999999999999 999999999
Q ss_pred eCCcccccccCCCcEEEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 103 TELLGRGIDFRTVRLVVNYDF------------------PSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 103 t~~~~~g~~i~~~~~vi~~~~------------------~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|+++++|+|+|++++||+++. |.+..+|.||+||+||. ..|.|+.++...+
T Consensus 376 T~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 376 TNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp CTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999777 88999999999999999 7899999987654
No 54
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.1e-21 Score=159.64 Aligned_cols=118 Identities=25% Similarity=0.290 Sum_probs=98.1
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCc---------------------------------------eEEEe
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIYDGIN---------------------------------------VDVIH 77 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~---------------------------------------~~~~~ 77 (159)
+...+......++||||++++.++.++..|...++. +.++|
T Consensus 432 li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~H 511 (1108)
T 3l9o_A 432 IVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHH 511 (1108)
T ss_dssp HHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEEC
T ss_pred HHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeec
Confidence 334444446679999999999999999887542211 78999
Q ss_pred cCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecC--------CCCHHHHHHHHhhccCCC--CcceEE
Q psy576 78 SDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDF--------PSSAISYIHRIGRAGRGG--REGKAV 147 (159)
Q Consensus 78 ~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~--------~~~~~~~~q~~GR~~R~g--~~g~~~ 147 (159)
|+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||.| ..|.|+
T Consensus 512 g~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~i 591 (1108)
T 3l9o_A 512 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 591 (1108)
T ss_dssp SCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999996554 337888999999999999 679999
Q ss_pred EEecCCC
Q psy576 148 TFFTKQD 154 (159)
Q Consensus 148 ~~~~~~~ 154 (159)
+++.+..
T Consensus 592 ll~~~~~ 598 (1108)
T 3l9o_A 592 MMIDEKM 598 (1108)
T ss_dssp EEECCCC
T ss_pred EEecCCc
Confidence 9887653
No 55
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.84 E-value=4.4e-21 Score=149.74 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=100.1
Q ss_pred ChHHHHHHHHhcC---CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEe-CCcc
Q psy576 32 SPVQAQDETILLG---IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITT-ELLG 107 (159)
Q Consensus 32 ~k~~~l~~~~~~~---~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t-~~~~ 107 (159)
.+...+.+++... ..++++|||. .++++.+++.|.+.+.++..+||+++..+|.++++.|++|+.+||||| ++++
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~ 409 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS 409 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh
Confidence 3444455555432 3345666666 899999999999887789999999999999999999999999999999 9999
Q ss_pred cccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEec
Q psy576 108 RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 108 ~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
+|+|+|++++||++++|+++..|.|++||+||.|+.+.++++++
T Consensus 410 ~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 410 TGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999999997764444433
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.84 E-value=1.5e-20 Score=146.47 Aligned_cols=118 Identities=16% Similarity=0.228 Sum_probs=101.6
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhC-CCceEEEecCCCHHHHHHHHHHHhcC-Cee-EEEEeCC
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYD-GINVDVIHSDRTQKQRDNVVRSFRTG-RIW-ILITTEL 105 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vlv~t~~ 105 (159)
..|...+.+++.. ..+.++||||.+.+.++.+...|... +..+..+||+++..+|.++++.|+++ +.. +|++|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 5677777777764 35679999999999999999999875 88899999999999999999999998 554 7889999
Q ss_pred cccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEE
Q psy576 106 LGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVT 148 (159)
Q Consensus 106 ~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~ 148 (159)
+++|+|+|.+++||++++|+++..|.|++||++|.|+.+.+.+
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 9999999999999999999999999999999999998776644
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.83 E-value=3.4e-20 Score=150.12 Aligned_cols=122 Identities=21% Similarity=0.254 Sum_probs=108.1
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+.. ..+.|+||||.|++.++.++..|.+.++++..+||+....++..+.++|+.| .|+|||+++++
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgR 520 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGR 520 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCST
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhc
Confidence 5688888777753 2567899999999999999999999999999999998777776677777777 69999999999
Q ss_pred ccccCCC----------------------------------------------------cEEEEecCCCCHHHHHHHHhh
Q psy576 109 GIDFRTV----------------------------------------------------RLVVNYDFPSSAISYIHRIGR 136 (159)
Q Consensus 109 g~~i~~~----------------------------------------------------~~vi~~~~~~~~~~~~q~~GR 136 (159)
|+||+.. .+||+++.|.+...|.|++||
T Consensus 521 GtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GR 600 (922)
T 1nkt_A 521 GTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGR 600 (922)
T ss_dssp TCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHT
T ss_pred CccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcc
Confidence 9999964 599999999999999999999
Q ss_pred ccCCCCcceEEEEecCCC
Q psy576 137 AGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 137 ~~R~g~~g~~~~~~~~~~ 154 (159)
+||.|.+|.++.|++..|
T Consensus 601 TGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 601 SGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp SSGGGCCEEEEEEEETTS
T ss_pred cccCCCCeeEEEEechhH
Confidence 999999999999998765
No 58
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.83 E-value=1.4e-20 Score=158.53 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=102.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEec
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYD 122 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~ 122 (159)
.+++++|||++++.++.+++.|++. +..+..+||+|+..+|.++++.|.+|+.+|||||+++++|+|+|++++||+++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~ 890 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 890 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC
Confidence 5678999999999999999999876 77899999999999999999999999999999999999999999999999988
Q ss_pred C-CCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 123 F-PSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 123 ~-~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
. +++...|.|++||+||.|+.|.|++++.+.
T Consensus 891 ~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 891 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 7 578999999999999999999999998764
No 59
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.83 E-value=4.4e-20 Score=153.65 Aligned_cols=122 Identities=22% Similarity=0.250 Sum_probs=104.8
Q ss_pred CCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCC-------------------------------------
Q psy576 29 GAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGI------------------------------------- 71 (159)
Q Consensus 29 ~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~------------------------------------- 71 (159)
....+...+.+.+......++||||.+++.++.++..|...++
T Consensus 319 ~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp CCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 3356777788888877778999999999999999998866444
Q ss_pred --ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCCC---------CHHHHHHHHhhccCC
Q psy576 72 --NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPS---------SAISYIHRIGRAGRG 140 (159)
Q Consensus 72 --~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~---------~~~~~~q~~GR~~R~ 140 (159)
.+..+||++++.+|..+++.|.+|+.+|||||+++++|+|+|+.+ ||+++.++ +..+|.||+||+||.
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~-VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRT-VIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSE-EEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCce-EEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 478999999999999999999999999999999999999999955 55544444 999999999999999
Q ss_pred C--CcceEEEEec
Q psy576 141 G--REGKAVTFFT 151 (159)
Q Consensus 141 g--~~g~~~~~~~ 151 (159)
| ..|.|++++.
T Consensus 478 G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 478 GLDSTGTVIVMAY 490 (997)
T ss_dssp TTCSSEEEEEECC
T ss_pred CCCcceEEEEecC
Confidence 8 5688888874
No 60
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.82 E-value=8e-20 Score=146.55 Aligned_cols=104 Identities=21% Similarity=0.359 Sum_probs=94.9
Q ss_pred CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEeCCcccccccCCCcEEEEecC-
Q psy576 47 PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILITTELLGRGIDFRTVRLVVNYDF- 123 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t~~~~~g~~i~~~~~vi~~~~- 123 (159)
...+|||.++++++.+++.|.+.+..+..+||+|++++|..+++.|++ |+.+|||||+++++|+|+ +++.||+++.
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 345789999999999999999999999999999999999999999999 889999999999999999 8999999998
Q ss_pred -------------CCCHHHHHHHHhhccCCCCc---ceEEEEec
Q psy576 124 -------------PSSAISYIHRIGRAGRGGRE---GKAVTFFT 151 (159)
Q Consensus 124 -------------~~~~~~~~q~~GR~~R~g~~---g~~~~~~~ 151 (159)
|.+..+|.||+||+||.|.. |.|+.++.
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 77899999999999999954 66666544
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=1.5e-19 Score=144.88 Aligned_cols=119 Identities=11% Similarity=0.133 Sum_probs=105.9
Q ss_pred CChHHHHHHHHhc---CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe---eEEEEeC
Q psy576 31 GSPVQAQDETILL---GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI---WILITTE 104 (159)
Q Consensus 31 ~~k~~~l~~~~~~---~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~t~ 104 (159)
..|...+..++.. ..++++||||...+.++.+...|...++.+..+||+++..+|.++++.|++++. .+|++|.
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 4566777666653 356799999999999999999999999999999999999999999999999765 4899999
Q ss_pred CcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 105 LLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
++++|+|++.+++||++++||++..+.|++||++|.|+...|.++
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 999999999999999999999999999999999999987665543
No 62
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.81 E-value=5.3e-20 Score=154.04 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=97.5
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEE----eCCc
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILIT----TELL 106 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~----t~~~ 106 (159)
..|...|.+++... ++++||||++++.++.+++.|... +++..+||++. .+++.|++|+.+|||| |+++
T Consensus 261 ~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 261 DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC-----
T ss_pred hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCee
Confidence 56777777888764 578999999999999999999887 89999999983 6789999999999999 8999
Q ss_pred ccccccCCC-cEEEEecCC-------------------------------------------------------------
Q psy576 107 GRGIDFRTV-RLVVNYDFP------------------------------------------------------------- 124 (159)
Q Consensus 107 ~~g~~i~~~-~~vi~~~~~------------------------------------------------------------- 124 (159)
++|+|+|++ ++||+++.|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999995 999999999
Q ss_pred ----------CCHHHHHHHHhhccCCCCcc--eEEEEecCCCc
Q psy576 125 ----------SSAISYIHRIGRAGRGGREG--KAVTFFTKQDA 155 (159)
Q Consensus 125 ----------~~~~~~~q~~GR~~R~g~~g--~~~~~~~~~~~ 155 (159)
.+..+|.||+||+||.|..| .++.++...|.
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~ 456 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDS 456 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCH
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCH
Confidence 78999999999999987665 36666655554
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.81 E-value=7.3e-20 Score=145.93 Aligned_cols=104 Identities=28% Similarity=0.333 Sum_probs=92.6
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEE----
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVV---- 119 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi---- 119 (159)
...+++||||++++.++.+++.|++.++++..+||++++++ |.++..+|||||+++++|+|+| +++||
T Consensus 394 ~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 394 IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCc
Confidence 35678999999999999999999999999999999998875 4556669999999999999997 99888
Q ss_pred ------Eec-----------CCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 120 ------NYD-----------FPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 120 ------~~~-----------~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
||| .|.+.++|.||+||+|| |.+|. +.|+.+.|...
T Consensus 466 ~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 566 89999999999999999 88898 89988887654
No 64
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.9e-19 Score=147.32 Aligned_cols=119 Identities=22% Similarity=0.254 Sum_probs=107.6
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe---eEEEEeCC
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI---WILITTEL 105 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~t~~ 105 (159)
..|+..|.+++.. ..++++||||.....++.+..+|...++++..+||+++..+|..+++.|+++.. .+|++|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 5688888888864 356799999999999999999999999999999999999999999999998554 59999999
Q ss_pred cccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 106 LGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 106 ~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
++.|+|++.+++||++++|+++..+.|++||++|.|+...|.++
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999999999977665543
No 65
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.80 E-value=5.2e-21 Score=155.41 Aligned_cols=108 Identities=24% Similarity=0.351 Sum_probs=95.6
Q ss_pred CCCCEEEEecchH--------HHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccC
Q psy576 45 IEPPVLVFVQSKE--------RAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFR 113 (159)
Q Consensus 45 ~~~~~lif~~~~~--------~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~ 113 (159)
.+++++|||+..+ .++.+++.|.+ .+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP 656 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVP 656 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCT
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCC
Confidence 5678999999664 46788888877 367899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC-CHHHHHHHHhhccCCCCcceEEEEecC
Q psy576 114 TVRLVVNYDFPS-SAISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 114 ~~~~vi~~~~~~-~~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
++++||+++.|. +...|.|++||+||.|..|.|++++.+
T Consensus 657 ~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 657 RANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp TCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999999985 788999999999999999999999873
No 66
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.79 E-value=2.9e-19 Score=149.95 Aligned_cols=96 Identities=27% Similarity=0.426 Sum_probs=82.7
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceE-EEecCCCHHHHHHHHHHHhcCCe
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVD-VIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
++.+.+..+ .+...|.+++.. .++++||||++++.++.++..|...++++. .+|| +|.+ ++.|++|+.
T Consensus 287 ~i~~~~~~~----~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~ 355 (1104)
T 4ddu_A 287 NITHVRISS----RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKI 355 (1104)
T ss_dssp CEEEEEESC----CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSC
T ss_pred CceeEEEec----CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCC
Confidence 444554444 467777777776 458999999999999999999999999998 9998 2555 999999999
Q ss_pred eEEEE----eCCcccccccCC-CcEEEEecCCC
Q psy576 98 WILIT----TELLGRGIDFRT-VRLVVNYDFPS 125 (159)
Q Consensus 98 ~vlv~----t~~~~~g~~i~~-~~~vi~~~~~~ 125 (159)
+|||| |+++++|+|+|+ +++||++++|.
T Consensus 356 ~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 356 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp SEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99999 999999999999 99999999998
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.78 E-value=1e-18 Score=138.67 Aligned_cols=98 Identities=24% Similarity=0.242 Sum_probs=86.3
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCC--------ceEEEecCCCHHHHHHHHHHHhcCCee---EEEEeCCccccccc
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGI--------NVDVIHSDRTQKQRDNVVRSFRTGRIW---ILITTELLGRGIDF 112 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~t~~~~~g~~i 112 (159)
...+++||||+++++++.+++.|.+.+. .+..+||.++ ++|.++++.|++++.. |||||+++++|+|+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 3457899999999999999999976432 2678899875 4799999999998755 88899999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHHhhccCCCC
Q psy576 113 RTVRLVVNYDFPSSAISYIHRIGRAGRGGR 142 (159)
Q Consensus 113 ~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~ 142 (159)
|.+++||++++|++...|.||+||++|.+.
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 999999999999999999999999999874
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.77 E-value=1.5e-18 Score=150.38 Aligned_cols=114 Identities=21% Similarity=0.345 Sum_probs=97.3
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhC-------------------------------------CCceEEEecCCCHHHHH
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYD-------------------------------------GINVDVIHSDRTQKQRD 86 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~~r~ 86 (159)
..++++||||+|++.++.+++.|.+. ...+.++||+|+..+|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 45678999999998888877766421 12378999999999999
Q ss_pred HHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----ec------CCCCHHHHHHHHhhccCCC--CcceEEEEecCCC
Q psy576 87 NVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN----YD------FPSSAISYIHRIGRAGRGG--REGKAVTFFTKQD 154 (159)
Q Consensus 87 ~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~~------~~~~~~~~~q~~GR~~R~g--~~g~~~~~~~~~~ 154 (159)
.+++.|++|.++|||||+++++|+|+|..++||. ++ .|.+..+|.||+||+||.| ..|.++++....+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 9999999999999999999999999999999985 33 3458999999999999988 5699999998887
Q ss_pred ccc
Q psy576 155 APL 157 (159)
Q Consensus 155 ~~~ 157 (159)
...
T Consensus 475 ~~~ 477 (1724)
T 4f92_B 475 LQY 477 (1724)
T ss_dssp CCH
T ss_pred HHH
Confidence 653
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.75 E-value=3.1e-18 Score=148.34 Aligned_cols=114 Identities=19% Similarity=0.313 Sum_probs=96.5
Q ss_pred cCCCCCEEEEecchHHHHHHHHHHHhC----------------------------------CCceEEEecCCCHHHHHHH
Q psy576 43 LGIEPPVLVFVQSKERAQELYNELIYD----------------------------------GINVDVIHSDRTQKQRDNV 88 (159)
Q Consensus 43 ~~~~~~~lif~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~~~~~~~~r~~~ 88 (159)
....++++|||++++.++.++..|... ...+.++||+|++.+|..+
T Consensus 1152 ~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 356789999999999998876655221 1238899999999999999
Q ss_pred HHHHhcCCeeEEEEeCCcccccccCCCcEEEE----e------cCCCCHHHHHHHHhhccCCCC--cceEEEEecCCCcc
Q psy576 89 VRSFRTGRIWILITTELLGRGIDFRTVRLVVN----Y------DFPSSAISYIHRIGRAGRGGR--EGKAVTFFTKQDAP 156 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~------~~~~~~~~~~q~~GR~~R~g~--~g~~~~~~~~~~~~ 156 (159)
++.|++|.++|||||+.+++|+|+|+..+||. + ..|.+..+|.||+||+||.|. .|.+++++.+.+..
T Consensus 1232 E~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~ 1311 (1724)
T 4f92_B 1232 EQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKD 1311 (1724)
T ss_dssp HHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHH
T ss_pred HHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHH
Confidence 99999999999999999999999999998883 2 235789999999999999994 69999998876654
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.47 E-value=3e-13 Score=112.94 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=84.3
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCC------------CceE-EEecC----------C----------CH----------
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDG------------INVD-VIHSD----------R----------TQ---------- 82 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~------------~~~~-~~~~~----------~----------~~---------- 82 (159)
+.++||||.++..|..+++.|.+.+ .++. .+||. + +.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 3579999999999999999886542 4454 44542 2 21
Q ss_pred -------------------HHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCc
Q psy576 83 -------------------KQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGRE 143 (159)
Q Consensus 83 -------------------~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~ 143 (159)
.+|.++++.|++|+++|||+|+++.+|+|+|.+ .+++++.|.+...|.|++||++|.++.
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 147788999999999999999999999999999 577889999999999999999998753
Q ss_pred ----ceEEEEec
Q psy576 144 ----GKAVTFFT 151 (159)
Q Consensus 144 ----g~~~~~~~ 151 (159)
|.++.|..
T Consensus 696 ~K~~G~IVdf~~ 707 (1038)
T 2w00_A 696 TKTFGNIVTFRD 707 (1038)
T ss_dssp TCCSEEEEESSC
T ss_pred CCCcEEEEEccc
Confidence 66665554
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.82 E-value=1.4e-08 Score=79.96 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=67.2
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEE--EeCCcccccccCC
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILI--TTELLGRGIDFRT 114 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv--~t~~~~~g~~i~~ 114 (159)
+.+++.. ..+.++||++|.+.++.+++.|... ..+.+|.. .++.++++.|+++. .||+ +|..+.+|+|+|+
T Consensus 376 l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~~---~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~ 448 (540)
T 2vl7_A 376 LKRIYEN-SSKSVLVFFPSYEMLESVRIHLSGI---PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFRE 448 (540)
T ss_dssp HHHHHHT-CSSEEEEEESCHHHHHHHHTTCTTS---CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC------------
T ss_pred HHHHHHh-CCCCEEEEeCCHHHHHHHHHHhccC---ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCC
Confidence 3344443 5678999999999999999888642 34566653 46788999998864 5666 8899999999997
Q ss_pred ----CcEEEEecCCCCH------------------------------HHHHHHHhhccCCCCcceEEEEec
Q psy576 115 ----VRLVVNYDFPSSA------------------------------ISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 115 ----~~~vi~~~~~~~~------------------------------~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
+++||+.+.|... ..+.|.+||+.|....--++++.+
T Consensus 449 ~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 449 KENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp ---CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred CcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 7889999888421 235689999999764322444443
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.79 E-value=5e-08 Score=79.96 Aligned_cols=122 Identities=25% Similarity=0.272 Sum_probs=89.3
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHH-----------------------------------------
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELI----------------------------------------- 67 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~----------------------------------------- 67 (159)
..|...+.+.+.. ..+.|+||+|.|.+..+.++++|+
T Consensus 426 ~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (997)
T 2ipc_A 426 KGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQL 505 (997)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccc
Confidence 5667666655542 357899999999999999999998
Q ss_pred -----------------------------------hCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccccc
Q psy576 68 -----------------------------------YDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDF 112 (159)
Q Consensus 68 -----------------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i 112 (159)
+.+++.-++..... +++.-+-+-....-.|.|||+++++|.||
T Consensus 506 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h--e~EAeIIAqAG~~GaVTIATNMAGRGTDI 583 (997)
T 2ipc_A 506 KDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH--AREAEIVAQAGRSKTVTIATNMAGRGTDI 583 (997)
T ss_dssp SHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH--HHHHHHHHTTTSTTCEEEECSSTTTTSCC
T ss_pred cccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch--HHHHHHHHhcCCCCeEEEEecccCCCcCe
Confidence 34566666666533 23221111112234699999999999999
Q ss_pred CCC-------------------c-------------------------------------------------------EE
Q psy576 113 RTV-------------------R-------------------------------------------------------LV 118 (159)
Q Consensus 113 ~~~-------------------~-------------------------------------------------------~v 118 (159)
.-- . +|
T Consensus 584 kLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhV 663 (997)
T 2ipc_A 584 KLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFI 663 (997)
T ss_dssp CSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCE
T ss_pred ecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEE
Confidence 532 1 67
Q ss_pred EEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 119 VNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 119 i~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|--..+.|..---|..||+||.|.+|...+|.+-.|
T Consensus 664 IGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 664 IGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp EESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred EeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 777778888888999999999999999988877554
No 73
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.66 E-value=1.6e-07 Score=68.98 Aligned_cols=119 Identities=8% Similarity=-0.001 Sum_probs=86.1
Q ss_pred CCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 30 AGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 30 ~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
..+|+.+|.+++.. ..+++++||+...+..+-+..++...+++...+.|..... +.+ -.++...+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh----cccCCceEEEEECCCC
Confidence 37899999988873 3567899999999999999999999999999999884432 211 1245556666677777
Q ss_pred cccc-----cCCCcEEEEecCCCCHHHH-HHHHhhccCCC----CcceEEEEecCC
Q psy576 108 RGID-----FRTVRLVVNYDFPSSAISY-IHRIGRAGRGG----REGKAVTFFTKQ 153 (159)
Q Consensus 108 ~g~~-----i~~~~~vi~~~~~~~~~~~-~q~~GR~~R~g----~~g~~~~~~~~~ 153 (159)
-|+| ...++.||.+|..|++..- +|.+-|+.|.| +.-.++.++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 7776 5689999999999998875 89888988873 234666666543
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.34 E-value=3.7e-06 Score=67.25 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=70.9
Q ss_pred HHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC--CcccccccCC--
Q psy576 39 ETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE--LLGRGIDFRT-- 114 (159)
Q Consensus 39 ~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~--~~~~g~~i~~-- 114 (159)
+++.. .++.++||++|...++.+++.|. ..... ...+++..++..+++.|+ ++-.||+++. ...+|+|+|+
T Consensus 442 ~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~ 516 (620)
T 4a15_A 442 DIILK-VKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNE 516 (620)
T ss_dssp HHHHH-HCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CC
T ss_pred HHHHh-CCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCc
Confidence 33333 45679999999999999998876 22222 444455678999999999 8888999974 9999999985
Q ss_pred CcEEEEecCCCCH-----------------------------HHHHHHHhhccCCCCcceEEEEec
Q psy576 115 VRLVVNYDFPSSA-----------------------------ISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 115 ~~~vi~~~~~~~~-----------------------------~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
++.||..+.|... ....|.+||+-|....--++++.+
T Consensus 517 l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 517 LEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp CCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 6788887777421 113689999999865433454444
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.87 E-value=0.00037 Score=54.93 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=67.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEec-CCCHHHHHHHHHHHhcCCeeEEEEe--CCcccccccC-----CCc
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHS-DRTQKQRDNVVRSFRTGRIWILITT--ELLGRGIDFR-----TVR 116 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~r~~~~~~f~~~~~~vlv~t--~~~~~g~~i~-----~~~ 116 (159)
.++.++||++|.+.++.+++. .+.+ .+..+ +++ +.+.++.|+...-.||+++ ....+|+|+| .++
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~~~~-v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---ISLP-KYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---CCSS-EEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred CCCCEEEEecCHHHHHHHHHh---cCCc-EEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCccee
Confidence 566899999999999998873 2322 33443 334 3457778854444799998 6999999999 477
Q ss_pred EEEEecCCCC--------------------H----------HHHHHHHhhccCCCCcceEEEEec
Q psy576 117 LVVNYDFPSS--------------------A----------ISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 117 ~vi~~~~~~~--------------------~----------~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
.||..+.|.. . ....|.+||+-|..+.--++++.+
T Consensus 465 ~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 529 (551)
T 3crv_A 465 DVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLD 529 (551)
T ss_dssp EEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEES
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEee
Confidence 8887776641 1 113588999999864433455444
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.85 E-value=0.008 Score=49.41 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=73.3
Q ss_pred eeeeecCCCCChHHHHHHHH-hc-CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 22 RMYRETEGAGSPVQAQDETI-LL-GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~-~~-~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
......+...+|.......+ .. ..+.++++.+++..-+...++.+.+. ++++..+||+++..++...++.+.+|
T Consensus 391 ~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g 470 (780)
T 1gm5_A 391 NRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG 470 (780)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC
Confidence 34444455567766633222 11 13568999999999888877766543 68899999999999999999999999
Q ss_pred CeeEEEEeCC-cccccccCCCcEEEEe
Q psy576 96 RIWILITTEL-LGRGIDFRTVRLVVNY 121 (159)
Q Consensus 96 ~~~vlv~t~~-~~~g~~i~~~~~vi~~ 121 (159)
+.+|+|+|.. +...+.+.++..||.-
T Consensus 471 ~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 471 QIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp CCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CCCEEEECHHHHhhhhhccCCceEEec
Confidence 9999999964 3345666777777653
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.69 E-value=0.014 Score=43.88 Aligned_cols=99 Identities=7% Similarity=0.054 Sum_probs=72.5
Q ss_pred eeeeecCCCCChHHHHH-HHHh-cCCCCCEEEEecchHHHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 22 RMYRETEGAGSPVQAQD-ETIL-LGIEPPVLVFVQSKERAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~-~~~~-~~~~~~~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
..........+|..... .++. ...+.+++|.++++.-+..+++.+++ .++++..++|+.+..++...++.+..++
T Consensus 38 ~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~ 117 (414)
T 3oiy_A 38 SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD 117 (414)
T ss_dssp CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC
Confidence 44444555567776422 2222 23567899999999999999999887 5778999999999999888999999999
Q ss_pred eeEEEEeCCcc----cccccCCCcEEEE
Q psy576 97 IWILITTELLG----RGIDFRTVRLVVN 120 (159)
Q Consensus 97 ~~vlv~t~~~~----~g~~i~~~~~vi~ 120 (159)
.+|+|+|+-.- .-++...+++||.
T Consensus 118 ~~Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 118 YHILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp CSEEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred CCEEEECHHHHHHHHHHhccccccEEEE
Confidence 99999996321 1244456776665
No 78
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.18 E-value=0.045 Score=46.75 Aligned_cols=99 Identities=9% Similarity=0.058 Sum_probs=73.8
Q ss_pred eeeeecCCCCChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 22 RMYRETEGAGSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
..........+|.......+. ...+.++||.+++++-+..+++.+.+ .++++..+||+.+..++...++.+.++.
T Consensus 95 dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~ 174 (1104)
T 4ddu_A 95 SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD 174 (1104)
T ss_dssp CEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSC
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC
Confidence 444555555777775333222 23567899999999999999999987 4678999999999989999999999999
Q ss_pred eeEEEEeCCcc----cccccCCCcEEEE
Q psy576 97 IWILITTELLG----RGIDFRTVRLVVN 120 (159)
Q Consensus 97 ~~vlv~t~~~~----~g~~i~~~~~vi~ 120 (159)
.+|+|+|+-.- .-++...+.++|.
T Consensus 175 ~~IlV~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 175 YHILVFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp CSEEEEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred CCEEEECHHHHHHHHHhhcccCcCEEEE
Confidence 99999995321 1144567787775
No 79
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.64 E-value=0.12 Score=44.41 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=72.2
Q ss_pred eeeeecCCCCChHHHHH-HHH-hcCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 22 RMYRETEGAGSPVQAQD-ETI-LLGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~-~~~-~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
......+...+|..... ..+ ....+.+++|.+++..-+...++.+.+. +.++..+++..+..++...++.+..|
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g 705 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 705 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 34444555567776532 221 2235568999999999888888877643 56788999999999999999999999
Q ss_pred CeeEEEEeCC-cccccccCCCcEEEE
Q psy576 96 RIWILITTEL-LGRGIDFRTVRLVVN 120 (159)
Q Consensus 96 ~~~vlv~t~~-~~~g~~i~~~~~vi~ 120 (159)
+.+|+|+|.. +...+.+.++.+||.
T Consensus 706 ~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCCEEEECHHHHhCCccccccceEEE
Confidence 9999999953 444466667776664
No 80
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=95.18 E-value=0.16 Score=40.48 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=62.8
Q ss_pred eeeeecCCCCChHHH-HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH--hcCCee
Q psy576 22 RMYRETEGAGSPVQA-QDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF--RTGRIW 98 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~ 98 (159)
..+...+...+|-.. +.-.+. ..+.+||.+++.+-+....+.|.+.++++..++|+.+..++..++..+ ..+..+
T Consensus 61 d~lv~~pTGsGKTl~~~lpal~--~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 138 (591)
T 2v1x_A 61 EVFLVMPTGGGKSLCYQLPALC--SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELK 138 (591)
T ss_dssp CEEEECCTTSCTTHHHHHHHHT--SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCC
T ss_pred CEEEEECCCChHHHHHHHHHHH--cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCC
Confidence 345555555666653 222222 356899999999999999999988899999999999999998888888 467889
Q ss_pred EEEEeC
Q psy576 99 ILITTE 104 (159)
Q Consensus 99 vlv~t~ 104 (159)
|+++|+
T Consensus 139 Ilv~Tp 144 (591)
T 2v1x_A 139 LIYVTP 144 (591)
T ss_dssp EEEECH
T ss_pred EEEECh
Confidence 999996
No 81
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.58 E-value=0.12 Score=40.34 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=62.7
Q ss_pred eeeeecCCCCChHHH-HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEE
Q psy576 22 RMYRETEGAGSPVQA-QDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWIL 100 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 100 (159)
..+.......+|-.. +.-.+. ..+.+||.++++.-+....+.+.+.++++..++|+.+..++...+..+..+..+|+
T Consensus 42 d~lv~apTGsGKTl~~~lp~l~--~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~il 119 (523)
T 1oyw_A 42 DCLVVMPTGGGKSLCYQIPALL--LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLL 119 (523)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH--SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEE
T ss_pred CEEEECCCCcHHHHHHHHHHHH--hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 344444444556542 222222 34679999999999999999999889999999999999999999999999999999
Q ss_pred EEeC
Q psy576 101 ITTE 104 (159)
Q Consensus 101 v~t~ 104 (159)
++|+
T Consensus 120 v~Tp 123 (523)
T 1oyw_A 120 YIAP 123 (523)
T ss_dssp EECH
T ss_pred EECH
Confidence 9885
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.77 E-value=0.92 Score=30.64 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=61.9
Q ss_pred eeeeecCCCCChHHHHH-HHHhc---C-CCCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQD-ETILL---G-IEPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~-~~~~~---~-~~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..........+|..... -++.. . ...+++|.+++++-+..+++.+++. +.++..++|+.+..... +.
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~ 129 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EV 129 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HH
T ss_pred CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HH
Confidence 34444555567765432 22222 1 2347999999999998888777553 67889999988765543 34
Q ss_pred HhcCCeeEEEEeCC-c-----ccccccCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-L-----GRGIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-~-----~~g~~i~~~~~vi~ 120 (159)
+.++..+|+|+|.- + ...++...++++|.
T Consensus 130 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 130 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp HHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred HhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 45567789999952 1 12345667777665
No 83
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=93.70 E-value=0.68 Score=28.27 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=38.5
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
.++|.+..+-..++...++..|..+..++++.+...|.+-++.|.+...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgv 53 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGV 53 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCC
Confidence 4568888888888888888888888888888888888888888765433
No 84
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.54 E-value=0.61 Score=31.93 Aligned_cols=94 Identities=10% Similarity=0.136 Sum_probs=60.5
Q ss_pred eeeeecCCCCChHHH-HHHHHh----cCCCCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETIL----LGIEPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..........+|... +.-++. .....++||.+++++-+..+++.++.. +.++..++|+.+..+....+
T Consensus 63 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 140 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-- 140 (230)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT--
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc--
Confidence 344455555777765 333332 223468999999999999888877653 56788999998776554332
Q ss_pred HhcCCeeEEEEeCC-c-----ccccccCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-L-----GRGIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-~-----~~g~~i~~~~~vi~ 120 (159)
...+|+|+|.- + ...++...++++|.
T Consensus 141 ---~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 ---KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp ---TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred ---cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 35789999963 1 12345556666664
No 85
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.21 E-value=0.92 Score=31.60 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=60.3
Q ss_pred eeeeecCCCCChHHHHH-----HHHhcCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQD-----ETILLGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~-----~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
..+.......+|..... .+.......+++|.+++++-+..+++.++.. +..+..++|+.+.......+
T Consensus 82 ~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 158 (249)
T 3ber_A 82 DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL--- 158 (249)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---
T ss_pred CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---
Confidence 44444555567765522 2222333457999999999888888776543 77889999988765443322
Q ss_pred hcCCeeEEEEeCC-c------ccccccCCCcEEEE
Q psy576 93 RTGRIWILITTEL-L------GRGIDFRTVRLVVN 120 (159)
Q Consensus 93 ~~~~~~vlv~t~~-~------~~g~~i~~~~~vi~ 120 (159)
.+..+|+|+|.- + ..++++..++++|.
T Consensus 159 -~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 159 -AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp -HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred -cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 246789999952 1 13456667776664
No 86
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.29 E-value=1.9 Score=29.64 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=61.2
Q ss_pred eeeeecCCCCChHHH-HHHHHh---c------CCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETIL---L------GIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDN 87 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~---~------~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~ 87 (159)
..+.......+|... +.-++. . ..+.+++|.+++++-+..+++.++. .+..+..++|+.+......
T Consensus 68 ~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 147 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 147 (242)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH
Confidence 455555555777655 222222 1 2355799999999998888776654 3788999999988766554
Q ss_pred HHHHHhcCCeeEEEEeCC-----cc-cccccCCCcEEEE
Q psy576 88 VVRSFRTGRIWILITTEL-----LG-RGIDFRTVRLVVN 120 (159)
Q Consensus 88 ~~~~f~~~~~~vlv~t~~-----~~-~g~~i~~~~~vi~ 120 (159)
.+.. ..+|+|+|+- +. ..+++..+.++|.
T Consensus 148 ~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 148 DLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp HHHH----CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred HhcC----CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 4332 4679999952 11 2345667776664
No 87
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=92.26 E-value=0.68 Score=39.43 Aligned_cols=97 Identities=11% Similarity=0.105 Sum_probs=65.4
Q ss_pred eeeeecCCCCChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhC----CC----ceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYD----GI----NVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~ 91 (159)
..+.......+|.....-++. ...+.+++|.++++.-+..+++.++.. +. .+..++|+.+..++.+..+.
T Consensus 73 dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~ 152 (1054)
T 1gku_B 73 SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQN 152 (1054)
T ss_dssp CEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhh
Confidence 444444555677654333332 235678999999999999888877643 55 78999999999888777777
Q ss_pred HhcCCeeEEEEeCC-cccccc-cCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-LGRGID-FRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-~~~g~~-i~~~~~vi~ 120 (159)
+.+ .+|+|+|+- +..-+. +..++++|.
T Consensus 153 l~~--~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 153 LRN--FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp GGG--CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred ccC--CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 777 889999962 211111 445666664
No 88
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.50 E-value=2.2 Score=31.23 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=61.9
Q ss_pred eeeeecCCCCChHHHH-HHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQ-DETILL----GIEPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l-~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
......+...+|.... .-++.. ....++||.|+++.-+..+++.+.+. +.++..++|+.+...... .
T Consensus 47 ~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~ 123 (391)
T 1xti_A 47 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---V 123 (391)
T ss_dssp CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---H
T ss_pred cEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---H
Confidence 4455555556777653 333322 13457999999999998888777553 678899999987665443 3
Q ss_pred HhcCCeeEEEEeCC-c-----ccccccCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-L-----GRGIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-~-----~~g~~i~~~~~vi~ 120 (159)
+..+..+|+|+|.- + ...++...+++||.
T Consensus 124 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 124 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp HHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 44566789999953 2 12244566676664
No 89
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=91.38 E-value=1.9 Score=29.45 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=57.2
Q ss_pred eeeeecCCCCChHHHH-H---HHHhc-----CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQ-D---ETILL-----GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNV 88 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l-~---~~~~~-----~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~ 88 (159)
..........+|.... . +.+.. ..+.+++|.+++++-+..+++.++.. +..+..++|+.+.......
T Consensus 64 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 143 (236)
T 2pl3_A 64 DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER 143 (236)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh
Confidence 3444555556777642 2 22211 23567999999999999888877653 4678889998765543332
Q ss_pred HHHHhcCCeeEEEEeCC-c----cc--ccccCCCcEEEE
Q psy576 89 VRSFRTGRIWILITTEL-L----GR--GIDFRTVRLVVN 120 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~-~----~~--g~~i~~~~~vi~ 120 (159)
+ +..+|+|+|.- + .. .++...++++|.
T Consensus 144 ~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 144 I-----NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp H-----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred C-----CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 2 45789999952 2 11 245556666664
No 90
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=90.77 E-value=1.8 Score=35.90 Aligned_cols=75 Identities=11% Similarity=-0.027 Sum_probs=52.3
Q ss_pred eeecCCCCChHHH-HH-HHHhcCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 24 YRETEGAGSPVQA-QD-ETILLGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 24 ~~~~~~~~~k~~~-l~-~~~~~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
........+|... +. -++....+..++|.++|.+-|..+++++.. .++.+..+.|+++.+++.... ..
T Consensus 100 Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~ 173 (844)
T 1tf5_A 100 IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AA 173 (844)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HS
T ss_pred EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CC
Confidence 4444444666554 22 233444566899999999999888776643 488999999999987665432 26
Q ss_pred eEEEEeC
Q psy576 98 WILITTE 104 (159)
Q Consensus 98 ~vlv~t~ 104 (159)
+|+++|+
T Consensus 174 dIv~gTp 180 (844)
T 1tf5_A 174 DITYSTN 180 (844)
T ss_dssp SEEEEEH
T ss_pred CEEEECc
Confidence 7999995
No 91
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.75 E-value=0.91 Score=31.23 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=52.9
Q ss_pred eeeeecCCCCChHHH-HHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETILL----GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
..+.......+|... +.-++.. ....+++|.+++++-+..+++.++.. +..+..++|+.+... ..+.+
T Consensus 69 ~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l 145 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKL 145 (237)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC--------------
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHH
Confidence 344444444566654 3333332 23458999999999999888887653 456777888754332 33445
Q ss_pred hcCCeeEEEEeC-----Cccc-ccccCCCcEEEE
Q psy576 93 RTGRIWILITTE-----LLGR-GIDFRTVRLVVN 120 (159)
Q Consensus 93 ~~~~~~vlv~t~-----~~~~-g~~i~~~~~vi~ 120 (159)
..+...|+|+|. .+.. .++...++++|.
T Consensus 146 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 146 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp --CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred hcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 566788999994 2222 245556776664
No 92
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=90.46 E-value=1.4 Score=29.25 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=58.5
Q ss_pred eeeeecCCCCChHHH-HHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETILL----GIEPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..........+|... +.-++.. ....++++.++++.-+..+++.+... +..+..++|+.+..+... .
T Consensus 42 ~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~ 118 (206)
T 1vec_A 42 DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---R 118 (206)
T ss_dssp CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---H
T ss_pred CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---h
Confidence 444445555666654 3333332 23457999999999988888877542 567888999877654332 2
Q ss_pred HhcCCeeEEEEeCC-c----cc-ccccCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-L----GR-GIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-~----~~-g~~i~~~~~vi~ 120 (159)
+ .+..+|+|+|.- + .. .++...++++|.
T Consensus 119 ~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 119 L-DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp T-TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred c-CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 2 346789999962 1 12 234556776664
No 93
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=90.44 E-value=0.74 Score=31.17 Aligned_cols=94 Identities=11% Similarity=0.134 Sum_probs=54.5
Q ss_pred eeeeecCCCCChHHH-HHHHHh----cCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETIL----LGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
..........+|... +..++. .....++++.++++.-+..+++.+... +..+..++|+.+..+... .+
T Consensus 53 ~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~ 129 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL 129 (224)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC
Confidence 445555555777765 333333 234458999999999988888877543 677888898866544332 22
Q ss_pred hcCCeeEEEEeCCc------ccccccCCCcEEEE
Q psy576 93 RTGRIWILITTELL------GRGIDFRTVRLVVN 120 (159)
Q Consensus 93 ~~~~~~vlv~t~~~------~~g~~i~~~~~vi~ 120 (159)
. ..+|+|+|.-. ...++...++++|.
T Consensus 130 ~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 130 R--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp T--TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred C--CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 2 37799998521 22344556666664
No 94
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=90.13 E-value=0.31 Score=29.42 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=31.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
++.+++++|.+-..+...+..|.+.|+++..+.|++
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 456799999999999999999999888888888875
No 95
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=90.04 E-value=2 Score=35.70 Aligned_cols=75 Identities=12% Similarity=-0.082 Sum_probs=51.2
Q ss_pred eeecCCCCChHHH-HHHHH-hcCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 24 YRETEGAGSPVQA-QDETI-LLGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 24 ~~~~~~~~~k~~~-l~~~~-~~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
........+|... +.-++ ....+.+++|.++|..-|..+++.+.. .++.+..++|+++.+.+.... ..
T Consensus 91 Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~ 164 (853)
T 2fsf_A 91 IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AA 164 (853)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HS
T ss_pred eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CC
Confidence 4444444566554 22322 334566899999999988887776643 488999999999987555433 26
Q ss_pred eEEEEeC
Q psy576 98 WILITTE 104 (159)
Q Consensus 98 ~vlv~t~ 104 (159)
+|+|+|+
T Consensus 165 dIvvgTp 171 (853)
T 2fsf_A 165 DITYGTN 171 (853)
T ss_dssp SEEEEEH
T ss_pred CEEEECC
Confidence 7899886
No 96
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=90.00 E-value=1.4 Score=33.87 Aligned_cols=79 Identities=10% Similarity=-0.041 Sum_probs=51.1
Q ss_pred eeeeecCCCCChHHHHH----HHHhcCC---CCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQD----ETILLGI---EPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~----~~~~~~~---~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~ 90 (159)
......+...+|..... +.+.... ..++||.++++.-+....+.+... ++.+..++|+.+...+...+.
T Consensus 21 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 100 (555)
T 3tbk_A 21 NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII 100 (555)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh
Confidence 44555555567776522 2333323 678999999998888777766543 788999999986554432221
Q ss_pred HHhcCCeeEEEEeC
Q psy576 91 SFRTGRIWILITTE 104 (159)
Q Consensus 91 ~f~~~~~~vlv~t~ 104 (159)
+..+|+|+|.
T Consensus 101 ----~~~~i~v~T~ 110 (555)
T 3tbk_A 101 ----EDNDIIILTP 110 (555)
T ss_dssp ----HHCSEEEECH
T ss_pred ----cCCCEEEECH
Confidence 1366889885
No 97
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=89.71 E-value=2.6 Score=35.27 Aligned_cols=75 Identities=15% Similarity=-0.016 Sum_probs=52.6
Q ss_pred eeecCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 24 YRETEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 24 ~~~~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
........+|... |.-++....+.+++|.+++..-|...++++.. .++.+..+.|+++++++.... ..
T Consensus 128 Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~ 201 (922)
T 1nkt_A 128 VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NA 201 (922)
T ss_dssp EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HS
T ss_pred EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CC
Confidence 4444444666655 22334444567899999999988887776643 488999999999987665543 26
Q ss_pred eEEEEeC
Q psy576 98 WILITTE 104 (159)
Q Consensus 98 ~vlv~t~ 104 (159)
+|+++|+
T Consensus 202 DIvygTp 208 (922)
T 1nkt_A 202 DITYGTN 208 (922)
T ss_dssp SEEEEEH
T ss_pred CEEEECc
Confidence 7999985
No 98
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=89.54 E-value=0.31 Score=28.91 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=30.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
++.+++++|.+-..+...+..|.+.|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 456799999999999999999998888888888874
No 99
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=89.39 E-value=3.3 Score=27.38 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=60.3
Q ss_pred eeeeecCCCCChHHH-HHHHHhc-------CCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETILL-------GIEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~-------~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..........+|... +.-++.. ....++++.++++.-+..+++.+... ..++..++|+.+.......+.
T Consensus 40 ~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 118 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL- 118 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH-
T ss_pred CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh-
Confidence 344555555777765 3333332 23557999999999999998888765 467888999876654433322
Q ss_pred HhcCCeeEEEEeCC-----cc-cccccCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-----LG-RGIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-----~~-~g~~i~~~~~vi~ 120 (159)
...+|+|+|.- +. ..++...++++|.
T Consensus 119 ---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 119 ---RGADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp ---HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred ---CCCCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 24679999952 11 2345566776664
No 100
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=89.22 E-value=2.7 Score=31.41 Aligned_cols=94 Identities=11% Similarity=0.088 Sum_probs=60.9
Q ss_pred eeeeecCCCCChHHHHHHHHhc---CCCCCEEEEecchHHHHHHHHHHHhC-CC---ceEEEecCCCHHHHHHHHHHHhc
Q psy576 22 RMYRETEGAGSPVQAQDETILL---GIEPPVLVFVQSKERAQELYNELIYD-GI---NVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~~---~~~~~~lif~~~~~~~~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
......+...+|.......+.. ....++||.|++..-+....+.+.+. +. .+..++|+....++.....
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---- 100 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA---- 100 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH----
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc----
Confidence 3444445556777665444332 25678999999999888888887654 44 7899999988876554432
Q ss_pred CCeeEEEEeCC-ccc-----ccccCCCcEEEE
Q psy576 95 GRIWILITTEL-LGR-----GIDFRTVRLVVN 120 (159)
Q Consensus 95 ~~~~vlv~t~~-~~~-----g~~i~~~~~vi~ 120 (159)
...|+|+|.- +.. .+.....++||.
T Consensus 101 -~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 101 -RAKVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp -HCSEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred -CCCEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 3568888842 221 234455666654
No 101
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=89.11 E-value=4.6 Score=29.07 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=58.7
Q ss_pred eeeeecCCCCChHHHHHH-HHh---cCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHh
Q psy576 22 RMYRETEGAGSPVQAQDE-TIL---LGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~-~~~---~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
..+...+...+|...... ++. .....++++.+++..-+..+++.+.+. +..+..++|+.........+.
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--- 122 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK--- 122 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH---
T ss_pred CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC---
Confidence 444555555777765332 222 234568999999999888888877653 567888899877655433332
Q ss_pred cCCeeEEEEeCC-cc-----cccccCCCcEEEE
Q psy576 94 TGRIWILITTEL-LG-----RGIDFRTVRLVVN 120 (159)
Q Consensus 94 ~~~~~vlv~t~~-~~-----~g~~i~~~~~vi~ 120 (159)
..+|+|+|.- +. ..+++...++||.
T Consensus 123 --~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 123 --NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp --TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred --CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 4678898852 11 1234456666654
No 102
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=89.02 E-value=0.28 Score=29.25 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=30.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
++.+++++|.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 456799999999889999999998898888888874
No 103
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.96 E-value=3.9 Score=27.64 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=56.0
Q ss_pred eeeeecCCCCChHHH-HHHHHh---c-------CCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEecCCCHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETIL---L-------GIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHSDRTQKQRDN 87 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~---~-------~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~ 87 (159)
..........+|... +.-++. . ..+.++++.+++++-+..+++.+... +..+..++|+.+......
T Consensus 59 ~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (228)
T 3iuy_A 59 DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE 138 (228)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH
Confidence 445555555777654 222221 1 24567999999999999998888763 677888888866544332
Q ss_pred HHHHHhcCCeeEEEEeCC------cccccccCCCcEEEE
Q psy576 88 VVRSFRTGRIWILITTEL------LGRGIDFRTVRLVVN 120 (159)
Q Consensus 88 ~~~~f~~~~~~vlv~t~~------~~~g~~i~~~~~vi~ 120 (159)
.+. ...+|+|+|.- ....+++..++++|.
T Consensus 139 ---~~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 139 ---DIS-KGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp ---HHH-SCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred ---Hhc-CCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 222 34789999952 122345667776664
No 104
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.96 E-value=3.6 Score=31.07 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=59.9
Q ss_pred eeeeecCCCCChHHH-HH----HHHhcC-----CCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QD----ETILLG-----IEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDN 87 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~----~~~~~~-----~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~ 87 (159)
..........+|... +. .++... ...++||.+++++-+..+++.+++. +..+..++|+.+......
T Consensus 95 d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 174 (434)
T 2db3_A 95 DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE 174 (434)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH
T ss_pred CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH
Confidence 445555555777764 22 222221 2457999999999999998877653 567889999988765443
Q ss_pred HHHHHhcCCeeEEEEeCC-----ccc-ccccCCCcEEEE
Q psy576 88 VVRSFRTGRIWILITTEL-----LGR-GIDFRTVRLVVN 120 (159)
Q Consensus 88 ~~~~f~~~~~~vlv~t~~-----~~~-g~~i~~~~~vi~ 120 (159)
.+ ....+|+|+|.- +.. .+++..++++|.
T Consensus 175 ~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 175 CI----TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp HH----TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred Hh----hcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 22 235789999952 122 234556776664
No 105
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=88.76 E-value=0.3 Score=29.40 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=30.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
++.+++++|.+-..+...+..|.+.|++...+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456799999998888999999999999888787764
No 106
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=88.57 E-value=2.2 Score=32.87 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=55.5
Q ss_pred eeeeecCCCCChHHHHH----HHHhcCC---CCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQD----ETILLGI---EPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~----~~~~~~~---~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~ 90 (159)
......+...+|..... +.+.... ..++||.++++.-+....+.+... ++.+..++|+.+...+...+.
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI 103 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH
T ss_pred CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh
Confidence 44555555567766532 2333323 678999999999888877776553 788999999886554332221
Q ss_pred HHhcCCeeEEEEeCC-cc----cc-c-ccCCCcEEEE
Q psy576 91 SFRTGRIWILITTEL-LG----RG-I-DFRTVRLVVN 120 (159)
Q Consensus 91 ~f~~~~~~vlv~t~~-~~----~g-~-~i~~~~~vi~ 120 (159)
...+|+|+|.- +. .+ + .+..+++||.
T Consensus 104 ----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 104 ----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp ----HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred ----CCCCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 13668998853 21 11 2 4456666664
No 107
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=88.49 E-value=1.9 Score=29.80 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=47.4
Q ss_pred CCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC-c-----ccccccCCCc
Q psy576 47 PPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL-L-----GRGIDFRTVR 116 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~-----~~g~~i~~~~ 116 (159)
.++||.+++++-+..+++.++.. +..+..++|+.+....... + ....+|+|+|.- + ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 57999999999998888777543 5678888998766544322 2 245789999953 1 1224556667
Q ss_pred EEEE
Q psy576 117 LVVN 120 (159)
Q Consensus 117 ~vi~ 120 (159)
++|.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 108
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=88.28 E-value=3.3 Score=33.97 Aligned_cols=79 Identities=10% Similarity=-0.040 Sum_probs=48.6
Q ss_pred eeeeecCCCCChHHHHHH----HHhcCC---CCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQDE----TILLGI---EPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~----~~~~~~---~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~ 90 (159)
..........+|...... .+.... +.++||.|++..-+......+++. ++++..++|+.+...+...+.
T Consensus 265 ~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 344 (797)
T 4a2q_A 265 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI 344 (797)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh
Confidence 444555555677765332 222222 678999999999888877766553 789999999986554332221
Q ss_pred HHhcCCeeEEEEeC
Q psy576 91 SFRTGRIWILITTE 104 (159)
Q Consensus 91 ~f~~~~~~vlv~t~ 104 (159)
+..+|+|+|.
T Consensus 345 ----~~~~Ivv~Tp 354 (797)
T 4a2q_A 345 ----EDSDIIVVTP 354 (797)
T ss_dssp ----HTCSEEEECH
T ss_pred ----CCCCEEEEch
Confidence 2467999984
No 109
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=88.21 E-value=2 Score=31.44 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=51.5
Q ss_pred eeeeecCCCCChHHH-HHHHHh----cCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETIL----LGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
..+...+...+|... +.-++. .....++++.++++.-+..+++.+.+ .+..+..++|+.+..+....+.
T Consensus 60 ~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 137 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-- 137 (394)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH--
T ss_pred CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC--
Confidence 344444555667655 333332 22456899999999999888887754 3678889999988766554433
Q ss_pred hcCCeeEEEEeC
Q psy576 93 RTGRIWILITTE 104 (159)
Q Consensus 93 ~~~~~~vlv~t~ 104 (159)
..+|+|+|.
T Consensus 138 ---~~~i~v~T~ 146 (394)
T 1fuu_A 138 ---DAQIVVGTP 146 (394)
T ss_dssp ---HCSEEEECH
T ss_pred ---CCCEEEECH
Confidence 356888884
No 110
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=87.92 E-value=0.56 Score=27.38 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=30.0
Q ss_pred CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCC
Q psy576 47 PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRT 81 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (159)
.+++++|.+-..+...+..|.+.|+++..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999998899999999888888777888763
No 111
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.82 E-value=5.3 Score=27.84 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=59.6
Q ss_pred eeeeecCCCCChHHH-HHHHHh---c-----CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETIL---L-----GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNV 88 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~---~-----~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~ 88 (159)
..........+|... +.-++. . ..+.++++.+++++-+..+++.+++. +..+..++|+........
T Consensus 93 ~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 171 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ- 171 (262)
T ss_dssp CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH-
T ss_pred cEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH-
Confidence 344555555677765 222221 1 13567999999999999988887653 567788899876654432
Q ss_pred HHHHhcCCeeEEEEeCC-----cc--cccccCCCcEEEE
Q psy576 89 VRSFRTGRIWILITTEL-----LG--RGIDFRTVRLVVN 120 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~-----~~--~g~~i~~~~~vi~ 120 (159)
.+..+ .+|+|+|+- +. .++++..+.++|.
T Consensus 172 --~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 172 --KLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp --HHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred --HhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 23333 789999941 11 2356667776664
No 112
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=87.15 E-value=2.3 Score=24.06 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 81 (159)
+..+++++|.+-..+...+..|.+.|++ +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 5567999999988899999999988875 4455 7653
No 113
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=87.14 E-value=4.3 Score=28.89 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=52.9
Q ss_pred eeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 22 RMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
..+...+...+|.......+.. ...++++.++++.-+...++.+.+. +..+..++|+.+....... +. ..
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~-~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~ 106 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE-LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NA 106 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH-HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TC
T ss_pred CEEEEcCCCCcHHHHHHHHHHh-hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CC
Confidence 4555555557777654443333 3678999999999999888888642 5678899998876654332 22 36
Q ss_pred eEEEEeC
Q psy576 98 WILITTE 104 (159)
Q Consensus 98 ~vlv~t~ 104 (159)
+|+|+|.
T Consensus 107 ~i~v~T~ 113 (337)
T 2z0m_A 107 DIVVATP 113 (337)
T ss_dssp SEEEECH
T ss_pred CEEEECH
Confidence 7899884
No 114
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=86.99 E-value=2.8 Score=30.11 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=57.2
Q ss_pred eeeeecCCCCChHHH-HHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETILL----GIEPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..+.......+|... +..++.. ....++||.+++++-+..++..+... +..+...+|+.......
T Consensus 133 ~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----- 207 (300)
T 3fmo_B 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----- 207 (300)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-----
T ss_pred eEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-----
Confidence 444444555677654 3344432 23346999999999999988777543 46677777765432211
Q ss_pred HhcCCeeEEEEeCCc------c-cccccCCCcEEEE
Q psy576 92 FRTGRIWILITTELL------G-RGIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~~------~-~g~~i~~~~~vi~ 120 (159)
....+|+|+|+-. . ..+++..+.++|.
T Consensus 208 --~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 208 --KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp --CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred --cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 3456799999632 1 2456677887765
No 115
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=86.36 E-value=0.74 Score=27.57 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
...+++++|.+-..+...+..|...|+. +..+.|++
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 4567999999998999999999998884 77778874
No 116
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=86.31 E-value=3 Score=35.12 Aligned_cols=72 Identities=14% Similarity=-0.013 Sum_probs=49.9
Q ss_pred cCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCeeEE
Q psy576 27 TEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRIWIL 100 (159)
Q Consensus 27 ~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 100 (159)
.....+|... +.-++....+.+++|.++|..-|...++.+.. .++.+..+.|+++.+++.... ..+|+
T Consensus 99 akTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIv 172 (997)
T 2ipc_A 99 MKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVT 172 (997)
T ss_dssp CCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEE
T ss_pred ccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEE
Confidence 3333455443 22333444566899999999988887776643 488999999999987766544 36788
Q ss_pred EEeC
Q psy576 101 ITTE 104 (159)
Q Consensus 101 v~t~ 104 (159)
++|+
T Consensus 173 yGTp 176 (997)
T 2ipc_A 173 YVTN 176 (997)
T ss_dssp EEEH
T ss_pred EECc
Confidence 8885
No 117
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=86.01 E-value=1.4 Score=26.53 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=31.4
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRT 81 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (159)
.+..+++++|.+-..+...+..|...|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 35678999999999999999999998875577888863
No 118
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=85.49 E-value=0.91 Score=30.72 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=55.3
Q ss_pred eeeeecCCCCChHHH-HHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC--------CCceEEEecCCCHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETILL----GIEPPVLVFVQSKERAQELYNELIYD--------GINVDVIHSDRTQKQRDNV 88 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~ 88 (159)
..........+|... +.-++.. ....+++|.+++++-+..+++.+++. +..+..++|+.+.....
T Consensus 43 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 120 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL-- 120 (219)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT--
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH--
Confidence 344444554566654 3333322 23457999999999988887776542 56778888876443211
Q ss_pred HHHHhcCCeeEEEEeCC-----ccc-ccccCCCcEEEE
Q psy576 89 VRSFRTGRIWILITTEL-----LGR-GIDFRTVRLVVN 120 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~-----~~~-g~~i~~~~~vi~ 120 (159)
+.+ ....+|+|+|.- +.. .++...++++|.
T Consensus 121 -~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 121 -EKL-NVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp -CCC-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred -HHc-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 111 235679999952 111 234556666654
No 119
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=85.45 E-value=0.88 Score=28.13 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=29.6
Q ss_pred CCEEEEe-cchHHHHHHHHHHHhCCCceEEEecCCC
Q psy576 47 PPVLVFV-QSKERAQELYNELIYDGINVDVIHSDRT 81 (159)
Q Consensus 47 ~~~lif~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (159)
.+++++| .+-..+...+..|...|+++..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 6899999 5777888889999998888889998864
No 120
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=85.09 E-value=7.4 Score=28.69 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=47.5
Q ss_pred CCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC-c----c-cccccCCCc
Q psy576 47 PPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL-L----G-RGIDFRTVR 116 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-~----~-~g~~i~~~~ 116 (159)
.++||.+++++-+..+++.+.+ .+..+..++|+.+..+... .+. ...+|+|+|.- + . ..+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLE-RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHT-TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---Hhh-CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4699999999999988887754 3677889999887655433 222 34679999962 1 1 123455666
Q ss_pred EEEE
Q psy576 117 LVVN 120 (159)
Q Consensus 117 ~vi~ 120 (159)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 121
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=84.80 E-value=0.84 Score=29.11 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=30.3
Q ss_pred CCCCEEEEecch--HHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSK--ERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~--~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
++.++++||.+- ..+...+..|...|+++..+.|++
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~ 108 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGI 108 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcH
Confidence 456799999987 578888999999999988899975
No 122
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=83.55 E-value=1 Score=28.04 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=30.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|.+.|+ ++..+.|++
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 117 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGY 117 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcH
Confidence 456899999998888899999988887 477888886
No 123
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=83.32 E-value=9.9 Score=27.93 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=59.1
Q ss_pred eeeecCCCCChHHH-HHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHh
Q psy576 23 MYRETEGAGSPVQA-QDETILL----GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 23 ~~~~~~~~~~k~~~-l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
.+.......+|... +.-++.. ....+++|.++++.-+..+++.+... +..+...+|+..... ..+.+.
T Consensus 80 ~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 156 (414)
T 3eiq_A 80 VIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQ 156 (414)
T ss_dssp EEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHT
T ss_pred EEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHh
Confidence 44445555677655 3333332 24567999999999988888877653 566777777765433 344556
Q ss_pred cCCeeEEEEeCC-----ccc-ccccCCCcEEEE
Q psy576 94 TGRIWILITTEL-----LGR-GIDFRTVRLVVN 120 (159)
Q Consensus 94 ~~~~~vlv~t~~-----~~~-g~~i~~~~~vi~ 120 (159)
.+...|+|+|.- +.. .++...+++||.
T Consensus 157 ~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 157 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred cCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 677889999942 112 234455665554
No 124
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=83.31 E-value=1.3 Score=28.15 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=30.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 81 (159)
+..++++||.+-..+...+..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 457899999998888888999999888 5888889873
No 125
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=83.26 E-value=0.83 Score=27.37 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=30.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
++.+++++|.+-..+...+..|...|+ ++..+.|++
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 93 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGF 93 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCH
Confidence 456899999998888999999988888 477888875
No 126
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=82.36 E-value=0.88 Score=28.72 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=30.9
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.+..+++++|.+-..+...+..|.+.|+ ++..+.|++
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 3567899999998888889999988888 578888885
No 127
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=82.33 E-value=0.52 Score=29.17 Aligned_cols=44 Identities=9% Similarity=-0.040 Sum_probs=32.3
Q ss_pred HHHHHhcC-CCCCEEEEecchHH--HHHHHHHHHhCCCceEEEecCC
Q psy576 37 QDETILLG-IEPPVLVFVQSKER--AQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 37 l~~~~~~~-~~~~~lif~~~~~~--~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
+.+.+... ++.+++++|.+-.. +...+..|...|+++..+.|++
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 33444333 45579999998776 7888889988899877888875
No 128
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=81.95 E-value=12 Score=27.31 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=58.8
Q ss_pred eeeeecCCCCChHHHH-HHHHhc----CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQ-DETILL----GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l-~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
..+...+...+|.... .-++.. ..+.++++.++++.-+...++.+... +..+..++|+.........
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---- 135 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR---- 135 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----
T ss_pred CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----
Confidence 3455555557777643 333322 13457999999999988888777643 6678888998765433211
Q ss_pred hcCCeeEEEEeCC-----ccc-ccccCCCcEEEE
Q psy576 93 RTGRIWILITTEL-----LGR-GIDFRTVRLVVN 120 (159)
Q Consensus 93 ~~~~~~vlv~t~~-----~~~-g~~i~~~~~vi~ 120 (159)
..+..+|+|+|.- +.. ..++..+++||.
T Consensus 136 ~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 136 LNETVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 2356789999942 222 234556676664
No 129
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=80.97 E-value=1.1 Score=28.08 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=30.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
.+.++++||.+-..+...+..|...|+. +..+.|++
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 4567999999988888899999888884 88888875
No 130
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=80.46 E-value=6.5 Score=33.03 Aligned_cols=79 Identities=10% Similarity=-0.050 Sum_probs=47.8
Q ss_pred eeeeecCCCCChHHHHHHHHhc----CC---CCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQDETILL----GI---EPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~~----~~---~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~ 90 (159)
..........+|.......+.. .. +.++||.+++..-+...+..+++. ++.+..++|+.+...+...+.
T Consensus 265 ~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~ 344 (936)
T 4a2w_A 265 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI 344 (936)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc
Confidence 3444455556777664433321 12 668999999998888877766553 788999999886554322221
Q ss_pred HHhcCCeeEEEEeC
Q psy576 91 SFRTGRIWILITTE 104 (159)
Q Consensus 91 ~f~~~~~~vlv~t~ 104 (159)
...+|+|+|.
T Consensus 345 ----~~~~IvI~Tp 354 (936)
T 4a2w_A 345 ----EDSDIIVVTP 354 (936)
T ss_dssp ----HHCSEEEECH
T ss_pred ----cCCCEEEecH
Confidence 1357899884
No 131
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=80.17 E-value=19 Score=27.95 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=58.7
Q ss_pred eeeeecCCCCChHHH----HHHHHhcCC-----CCCEEEEecchHHHHHHHHHHHhC--------CCceEEEecCCCHHH
Q psy576 22 RMYRETEGAGSPVQA----QDETILLGI-----EPPVLVFVQSKERAQELYNELIYD--------GINVDVIHSDRTQKQ 84 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~----l~~~~~~~~-----~~~~lif~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~ 84 (159)
..+.......+|... +.+.+.... ..++||.+++++-+..+++.+++. ...+..++|+.+...
T Consensus 113 ~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 192 (563)
T 3i5x_A 113 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 192 (563)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH
T ss_pred eEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH
Confidence 445555555777764 222222211 247999999999999888877652 345677778765443
Q ss_pred HHHHHHHHhcCCeeEEEEeCCcc-----c--ccccCCCcEEEE
Q psy576 85 RDNVVRSFRTGRIWILITTELLG-----R--GIDFRTVRLVVN 120 (159)
Q Consensus 85 r~~~~~~f~~~~~~vlv~t~~~~-----~--g~~i~~~~~vi~ 120 (159)
.++.+..+..+|+|+|+-.. . ...+..+.+||.
T Consensus 193 ---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 193 ---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp ---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ---HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 34555556778999996321 1 224456776664
No 132
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=79.98 E-value=6.4 Score=29.83 Aligned_cols=68 Identities=13% Similarity=-0.000 Sum_probs=50.1
Q ss_pred eeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 23 MYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 23 ~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
.....+...+|.......+... +.++||.|+++.-+....+.+.+.+.+ +..++|+... ...|+|
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv 176 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTV 176 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEE
Confidence 4444555577877765555542 678999999999999999888777788 8999987643 356777
Q ss_pred EeC
Q psy576 102 TTE 104 (159)
Q Consensus 102 ~t~ 104 (159)
+|.
T Consensus 177 ~T~ 179 (472)
T 2fwr_A 177 STY 179 (472)
T ss_dssp EEH
T ss_pred EEc
Confidence 774
No 133
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=79.28 E-value=13 Score=25.52 Aligned_cols=68 Identities=13% Similarity=-0.000 Sum_probs=48.5
Q ss_pred eeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 23 MYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 23 ~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
.....+...+|.......+... ..++++++++..-+....+.+.+.+.. +..++|+... ...|+|
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-------------~~~i~v 176 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTV 176 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC-------------CCSEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-------------cCCEEE
Confidence 3444444467777766555543 678999999999998888888776777 8888886532 456888
Q ss_pred EeC
Q psy576 102 TTE 104 (159)
Q Consensus 102 ~t~ 104 (159)
+|.
T Consensus 177 ~T~ 179 (237)
T 2fz4_A 177 STY 179 (237)
T ss_dssp EEH
T ss_pred EeH
Confidence 883
No 134
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=78.77 E-value=5.7 Score=31.75 Aligned_cols=96 Identities=13% Similarity=0.012 Sum_probs=57.8
Q ss_pred ceeeeecCCCCChHHHHHHH----HhcCC---CCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHH
Q psy576 21 ARMYRETEGAGSPVQAQDET----ILLGI---EPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVV 89 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l~~~----~~~~~---~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~ 89 (159)
.......+...+|....... +.... .+++||.++++.-+....+.+.+. ++++..++|+.+.......+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 108 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI 108 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh
Confidence 34555555557777653322 22222 268999999998888777776553 78899999987654332222
Q ss_pred HHHhcCCeeEEEEeCC-c----ccc-c-ccCCCcEEEE
Q psy576 90 RSFRTGRIWILITTEL-L----GRG-I-DFRTVRLVVN 120 (159)
Q Consensus 90 ~~f~~~~~~vlv~t~~-~----~~g-~-~i~~~~~vi~ 120 (159)
. ...+|+|+|.- + ..+ + .+..+++||.
T Consensus 109 ~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vVi 142 (696)
T 2ykg_A 109 V----ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 142 (696)
T ss_dssp H----HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEE
T ss_pred c----cCCCEEEECHHHHHHHHhcCcccccccccEEEE
Confidence 1 24779999852 2 122 2 3455666664
No 135
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=78.70 E-value=1.7 Score=27.50 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
...++++||.+-..+...+..|...|+. +..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 4567999999988899999999998874 77777864
No 136
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=78.60 E-value=1.5 Score=27.51 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=29.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|.+.|+. +..+.|++
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 4567999999988899999999988884 77778875
No 137
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=78.44 E-value=16 Score=28.23 Aligned_cols=111 Identities=15% Similarity=0.004 Sum_probs=70.5
Q ss_pred eeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC-CCceEEEecC-------CC-----HHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD-GINVDVIHSD-------RT-----QKQRDNV 88 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~-------~~-----~~~r~~~ 88 (159)
..+.-+.+ ..|.-.+..+... .++++||.+.+...|..++.-|+.. +.++.++-+. .. ..+|..+
T Consensus 17 ~~l~g~~g-s~ka~~~a~l~~~-~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~ 94 (483)
T 3hjh_A 17 RLLGELTG-AACATLVAEIAER-HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 (483)
T ss_dssp EEEECCCT-THHHHHHHHHHHH-SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHH
T ss_pred EEEeCCCc-hHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHH
Confidence 34444444 5777777888775 4678999999999999999999764 2234433221 11 2457777
Q ss_pred HHHHhcCCeeEEEEeCCcccccccCC-----CcEEEEecCCCCHHHHHHHH
Q psy576 89 VRSFRTGRIWILITTELLGRGIDFRT-----VRLVVNYDFPSSAISYIHRI 134 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~~~~g~~i~~-----~~~vi~~~~~~~~~~~~q~~ 134 (159)
+..+..++..|+|+|-.+..+.-.|. ....+..+...+...+.++.
T Consensus 95 l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp HHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 88887887788888744333332232 23445556666777666653
No 138
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.17 E-value=18 Score=26.58 Aligned_cols=95 Identities=9% Similarity=0.118 Sum_probs=59.3
Q ss_pred eeeeecCCCCChHHHHH-HHHhc----CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQD-ETILL----GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~-~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
..........+|..... -++.. ....++||.++++.-+..+++.+.+. +..+..++|+....+....+.
T Consensus 76 ~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 153 (410)
T 2j0s_A 76 DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD-- 153 (410)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH--
T ss_pred CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh--
Confidence 44555555577775533 33332 24568999999999999888877553 567888899887665443322
Q ss_pred hcCCeeEEEEeCC-----ccc-ccccCCCcEEEE
Q psy576 93 RTGRIWILITTEL-----LGR-GIDFRTVRLVVN 120 (159)
Q Consensus 93 ~~~~~~vlv~t~~-----~~~-g~~i~~~~~vi~ 120 (159)
....|+|+|.- +.. .++...+++||.
T Consensus 154 --~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 154 --YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp --HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred --cCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 23578998842 222 344455666654
No 139
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=76.63 E-value=8.7 Score=29.43 Aligned_cols=92 Identities=10% Similarity=0.091 Sum_probs=59.1
Q ss_pred eeeeecCCCCChHHHHHHHHhc---CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhc
Q psy576 22 RMYRETEGAGSPVQAQDETILL---GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~~---~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
......+...+|.......+.. ...+++||.+++..-+....+.+... +..+..++|+.+..++ ..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~ 202 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YK 202 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GC
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cc
Confidence 4445555557787775443331 23458999999999999888888764 2467888998766543 35
Q ss_pred CCeeEEEEeCC-cccc--cccCCCcEEEE
Q psy576 95 GRIWILITTEL-LGRG--IDFRTVRLVVN 120 (159)
Q Consensus 95 ~~~~vlv~t~~-~~~g--~~i~~~~~vi~ 120 (159)
+...|+|+|.- +... ..+....+||.
T Consensus 203 ~~~~I~i~T~~~l~~~~~~~~~~~~liIi 231 (510)
T 2oca_A 203 NDAPVVVGTWQTVVKQPKEWFSQFGMMMN 231 (510)
T ss_dssp TTCSEEEEEHHHHTTSCGGGGGGEEEEEE
T ss_pred cCCcEEEEeHHHHhhchhhhhhcCCEEEE
Confidence 67889999843 2222 23445555554
No 140
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=75.87 E-value=3.3 Score=29.47 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=33.2
Q ss_pred HHhcCCCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 40 TILLGIEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 40 ~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.+...++.++++||.+-..+...+.+|...|+ ++..+.|++
T Consensus 175 ~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi 216 (265)
T 4f67_A 175 NLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGI 216 (265)
T ss_dssp HTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHH
T ss_pred hhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 34334667899999999999999999988887 577888875
No 141
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=75.82 E-value=1.5 Score=27.39 Aligned_cols=37 Identities=5% Similarity=0.114 Sum_probs=30.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 81 (159)
.+.+++++|.+-......+..|.+.|+ ++..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 456799999998888888888988888 4778888874
No 142
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=75.66 E-value=27 Score=27.33 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=58.3
Q ss_pred eeeeecCCCCChHHH-HH---HHHhcC-----CCCCEEEEecchHHHHHHHHHHHhC--------CCceEEEecCCCHHH
Q psy576 22 RMYRETEGAGSPVQA-QD---ETILLG-----IEPPVLVFVQSKERAQELYNELIYD--------GINVDVIHSDRTQKQ 84 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~---~~~~~~-----~~~~~lif~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~ 84 (159)
..+.......+|... +. +.+... ...++||.+++++-+..+++.+.+. ...+..++|+....
T Consensus 62 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~- 140 (579)
T 3sqw_A 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR- 140 (579)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH-
T ss_pred eEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH-
Confidence 445555555777764 22 222221 1347999999999998888877652 34566777776544
Q ss_pred HHHHHHHHhcCCeeEEEEeCCcc-----c--ccccCCCcEEEE
Q psy576 85 RDNVVRSFRTGRIWILITTELLG-----R--GIDFRTVRLVVN 120 (159)
Q Consensus 85 r~~~~~~f~~~~~~vlv~t~~~~-----~--g~~i~~~~~vi~ 120 (159)
..++.+..+..+|+|+|+-.- . ...+..+.+||.
T Consensus 141 --~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 141 --AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp --HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred --HHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 344555556778999995311 1 234556776654
No 143
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=75.28 E-value=8.1 Score=26.34 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=56.6
Q ss_pred eeeeecCCCCChHHH-HHHHHh---c--CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETIL---L--GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~---~--~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..+.......+|... +.-++. . ..+.++++.+++++-+..+++.+.+. +..+..++|+... ......
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 144 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVA---AKKFGP 144 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHH---HTTTST
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccH---HHHhhh
Confidence 445555555777765 233322 1 23447999999999999988887654 5566666654211 111112
Q ss_pred HhcCCeeEEEEeCC-----ccc---ccccCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-----LGR---GIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-----~~~---g~~i~~~~~vi~ 120 (159)
...+..+|+|+|.- +.. .+++..+.++|.
T Consensus 145 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 145 KSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp TSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred hhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 23456789999942 111 456677777665
No 144
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=74.28 E-value=2.6 Score=27.12 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=28.9
Q ss_pred CCCEEEEecch---------HHHHHHHHHHHhCCCceEEEecCC
Q psy576 46 EPPVLVFVQSK---------ERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 46 ~~~~lif~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
+.++++||.+- ..+..++..|...|+++..+.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 56899999987 357778888888899888888874
No 145
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=72.98 E-value=35 Score=27.45 Aligned_cols=88 Identities=20% Similarity=0.148 Sum_probs=59.7
Q ss_pred eeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEe--------------------cCC
Q psy576 23 MYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD--GINVDVIH--------------------SDR 80 (159)
Q Consensus 23 ~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~--------------------~~~ 80 (159)
...-+.+ ..|.-.++.++... +.++||.+++...|..++.-|+.. +..+.++- ...
T Consensus 32 ~l~g~tg-s~kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~ 109 (664)
T 1c4o_A 32 TLLGATG-TGKTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDA 109 (664)
T ss_dssp EEEECTT-SCHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCC
T ss_pred EEEcCCC-cHHHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhc
Confidence 4444555 68888888887653 568999999999999999998765 22233332 222
Q ss_pred C-----HHHHHHHHHHHhcCCeeEEEEeCCccccccc
Q psy576 81 T-----QKQRDNVVRSFRTGRIWILITTELLGRGIDF 112 (159)
Q Consensus 81 ~-----~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i 112 (159)
+ ...|..++..+..++..|+|+|-.+..++-.
T Consensus 110 ~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~~~ 146 (664)
T 1c4o_A 110 SINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGD 146 (664)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCCCC
T ss_pred ccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcCCC
Confidence 1 5577788888877776688877544466543
No 146
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=71.02 E-value=14 Score=22.15 Aligned_cols=111 Identities=8% Similarity=-0.046 Sum_probs=64.1
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc----CCeeEE
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT----GRIWIL 100 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vl 100 (159)
..++++..-...+...+....+-.++..+.+..++ ...+......+.++.-.++.....+.++.++. ....|+
T Consensus 12 Livdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a---~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii 88 (143)
T 3cnb_A 12 LIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDA---GDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVI 88 (143)
T ss_dssp EEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHH---HHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEE
T ss_pred EEEECCHHHHHHHHHHHHhccCccEEEEECCHHHH---HHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEE
Confidence 34455445556666777652334445666665544 34445556778888877766666677777765 345666
Q ss_pred EEeCCcccc-----cccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 101 ITTELLGRG-----IDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 101 v~t~~~~~g-----~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
+.|...... +.. .+.-+ +.-|.+...+.+++.++.+..
T Consensus 89 ~~s~~~~~~~~~~~~~~-g~~~~--l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 89 AMTGALTDDNVSRIVAL-GAETC--FGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp EEESSCCHHHHHHHHHT-TCSEE--EESSCCHHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHhc-CCcEE--EeCCCCHHHHHHHHHHHHHhh
Confidence 666543221 222 22222 235788889888887766543
No 147
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=70.71 E-value=8.4 Score=25.40 Aligned_cols=56 Identities=20% Similarity=0.059 Sum_probs=33.5
Q ss_pred CCCCEEEEecchHHHHH-HHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 45 IEPPVLVFVQSKERAQE-LYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~-l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
...+++++|++..-+.. +.+.+.. .+..+..++|+.....+...+. ....|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 35789999999988776 5444433 3567888888754332221111 1467889885
No 148
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=70.53 E-value=14 Score=21.79 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=31.2
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHH-HHhcCC
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVR-SFRTGR 96 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~-~f~~~~ 96 (159)
+++|....+....+...+++.|+++..+.+ +++-.+-++ ..++-.
T Consensus 5 ivvfstdeetlrkfkdiikkngfkvrtvrs---pqelkdsieelvkkyn 50 (134)
T 2l69_A 5 IVVFSTDEETLRKFKDIIKKNGFKVRTVRS---PQELKDSIEELVKKYN 50 (134)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTCEEEEECS---HHHHHHHHHHHTTCCC
T ss_pred EEEEeCCHHHHHHHHHHHHhcCceEEEecC---HHHHHHHHHHHHHHhC
Confidence 455777778888889999999999887775 555444444 444433
No 149
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=70.48 E-value=1.1 Score=35.96 Aligned_cols=79 Identities=15% Similarity=-0.051 Sum_probs=47.5
Q ss_pred eeeeecCCCCChHHHHHHHH----hc----CCCCCEEEEecchHHHHHH-HHHHHhC---CCceEEEecCCCHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQDETI----LL----GIEPPVLVFVQSKERAQEL-YNELIYD---GINVDVIHSDRTQKQRDNVV 89 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~----~~----~~~~~~lif~~~~~~~~~l-~~~l~~~---~~~~~~~~~~~~~~~r~~~~ 89 (159)
......+...+|.......+ .. ....++||.++++.-+... .+.+.+. ++.+..++|+.+..++...+
T Consensus 24 ~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~ 103 (699)
T 4gl2_A 24 NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEV 103 (699)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhh
Confidence 34455555567766533222 21 2237899999999888887 7766554 27899999987655433222
Q ss_pred HHHhcCCeeEEEEeC
Q psy576 90 RSFRTGRIWILITTE 104 (159)
Q Consensus 90 ~~f~~~~~~vlv~t~ 104 (159)
. +..+|+|+|.
T Consensus 104 ~----~~~~Ilv~Tp 114 (699)
T 4gl2_A 104 V----KSCDIIISTA 114 (699)
T ss_dssp H----HSCSEEEEEH
T ss_pred h----cCCCEEEECH
Confidence 2 4577889884
No 150
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=70.44 E-value=7.5 Score=27.36 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 81 (159)
.+.+++++|.+-..+...+..|...|+ ++..+.|++.
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 557899999998888888999988888 5888889875
No 151
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=70.15 E-value=8.3 Score=27.15 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=33.2
Q ss_pred HHHHHHhc---CCCCCEEEEecchHHHHHHHHHHH-hCCC-ceEEEecCC
Q psy576 36 AQDETILL---GIEPPVLVFVQSKERAQELYNELI-YDGI-NVDVIHSDR 80 (159)
Q Consensus 36 ~l~~~~~~---~~~~~~lif~~~~~~~~~l~~~l~-~~~~-~~~~~~~~~ 80 (159)
.+.+.+.. ..+.++++||.+-..+...+..|. ..|+ ++..+.|++
T Consensus 220 ~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 220 ELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 34444443 345679999999888888888888 7787 577888874
No 152
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=68.49 E-value=5.8 Score=30.73 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccC
Q psy576 34 VQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFR 113 (159)
Q Consensus 34 ~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~ 113 (159)
.+.|.++++. .+.++++.|.+...++.+.+.|...+++....... . .+..| .|.|+...+..|+..|
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~---~-------~~~~g--~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL---D-------EASDR--GRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG---G-------GCCTT--CEEEEESCCCSCEEET
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch---h-------hcCCC--cEEEEEcccccCcccC
Confidence 4556666653 35689999999999999999999888765443221 1 12334 4666667889999999
Q ss_pred CCcEEEEe
Q psy576 114 TVRLVVNY 121 (159)
Q Consensus 114 ~~~~vi~~ 121 (159)
....++.-
T Consensus 438 ~~klaVIT 445 (483)
T 3hjh_A 438 VRNLALIC 445 (483)
T ss_dssp TTTEEEEE
T ss_pred CCCEEEEE
Confidence 98877763
No 153
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=68.24 E-value=18 Score=22.17 Aligned_cols=113 Identities=11% Similarity=0.071 Sum_probs=66.5
Q ss_pred eeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEE
Q psy576 23 MYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWIL 100 (159)
Q Consensus 23 ~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vl 100 (159)
....++++..-...+..++........+..+.+..+ ..+.+......+.++.-.++.....+.++.+++ ....|+
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~---al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQE---AIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHH---HHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHH---HHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 344455545556667777775322234455666553 344555666778888877776666677777665 345666
Q ss_pred EEeCCcc-----cccccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 101 ITTELLG-----RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 101 v~t~~~~-----~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
+.|.... ..+.. .++-+ +.-|.+...+.+++.++.+.+
T Consensus 99 ~ls~~~~~~~~~~~~~~-g~~~~--l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 99 VVTTFKRAGYFERAVKA-GVDAY--VLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp EEESCCCHHHHHHHHHT-TCSEE--EETTSCHHHHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHC-CCcEE--EecCCCHHHHHHHHHHHHcCC
Confidence 6665432 12222 22222 235778999999888876653
No 154
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=67.33 E-value=26 Score=24.78 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 55 SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 55 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
+..+++.+.+.|+..|+.+ .++..++.++-.+.++.|..
T Consensus 47 t~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHH
Confidence 4468889999999999986 56667889999999999865
No 155
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=66.21 E-value=19 Score=21.68 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=64.5
Q ss_pred eeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHh-----CCCceEEEecCCCHHHHHHHHHHHhc----
Q psy576 24 YRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIY-----DGINVDVIHSDRTQKQRDNVVRSFRT---- 94 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~---- 94 (159)
...++++..-...+..++........+..+.+..++.. .+.. ....+.++.-.++.....+.++.++.
T Consensus 12 iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~---~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 12 VLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAIN---KLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHH---HHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHH---HHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 34445544455666777765322224455666554443 3444 55677888777776666666666654
Q ss_pred --CCeeEEEEeCCcccc-----cccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 95 --GRIWILITTELLGRG-----IDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 95 --~~~~vlv~t~~~~~g-----~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
....|++.|...... +....++- .+.-|.+...+.+.+.++...+
T Consensus 89 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~--~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDY--YVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCE--EECSSCCHHHHHHHHHHHHCC-
T ss_pred ccCCCeEEEEeCCCChHHHHHHHhcCCcce--eeeCCCCHHHHHHHHHHHHHhc
Confidence 456677766543222 22221222 3446889999999998887654
No 156
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=65.65 E-value=34 Score=24.63 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=55.1
Q ss_pred ceeeeecCCCCChHHHHH-HHHhc----CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHH
Q psy576 21 ARMYRETEGAGSPVQAQD-ETILL----GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l~-~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
.......+...+|..... -++.. ....++++.++++.-+...++.+.+. +..+...+++.....
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 117 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN------- 117 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-------
Confidence 344555555577776533 23322 24568999999999999888887653 456666776543221
Q ss_pred HhcCCeeEEEEeCCc------ccccccCCCcEEEE
Q psy576 92 FRTGRIWILITTELL------GRGIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~~------~~g~~i~~~~~vi~ 120 (159)
.....+|+|+|.-. ...+++..+++||.
T Consensus 118 -~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 118 -KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp -SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred -ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 12356788888531 22334556676664
No 157
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=64.91 E-value=33 Score=27.58 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=71.0
Q ss_pred eeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEe--------------------cC
Q psy576 22 RMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD--GINVDVIH--------------------SD 79 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~--------------------~~ 79 (159)
+...-+.+ ..|.-.++.++... +.++||.+++...|..++.-|+.. +..+.++- ..
T Consensus 35 ~~l~g~~g-s~k~~~~a~~~~~~-~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~ 112 (661)
T 2d7d_A 35 QTLLGATG-TGKTFTVSNLIKEV-NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 112 (661)
T ss_dssp EEEEECTT-SCHHHHHHHHHHHH-CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCE
T ss_pred EEEECcCC-cHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhh
Confidence 34444555 68888888887653 568999999999999999998765 22343332 11
Q ss_pred C--C---HHHHHHHHHHHhcCCeeEEEEeCCcccccccCC----CcEEEEecCCCCHHHHHHHH
Q psy576 80 R--T---QKQRDNVVRSFRTGRIWILITTELLGRGIDFRT----VRLVVNYDFPSSAISYIHRI 134 (159)
Q Consensus 80 ~--~---~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~----~~~vi~~~~~~~~~~~~q~~ 134 (159)
. + ...|..++..+..++..|+|+|-.+..++-.|. ....+..+...+...+.++.
T Consensus 113 ~~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L 176 (661)
T 2d7d_A 113 ASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKL 176 (661)
T ss_dssp EEECHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHH
Confidence 1 1 567788888887666667787754446654432 22344455556666666543
No 158
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=64.84 E-value=20 Score=22.13 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=33.6
Q ss_pred ecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 53 VQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 53 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
|.+.+.+..+..+|...++....+.=.+++..|.+..+..
T Consensus 13 c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 13 TAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 4456778899999999999888888878899999888887
No 159
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=64.63 E-value=17 Score=20.71 Aligned_cols=47 Identities=32% Similarity=0.518 Sum_probs=32.5
Q ss_pred CCCCEEEEec--chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 45 IEPPVLVFVQ--SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 45 ~~~~~lif~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
.++|.+||++ +...+.++....++.+...-++.+. ++++-..-...|
T Consensus 50 ngkplvvfvngasqndvnefqneakkegvsydvlkst-dpeeltqrvref 98 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST-DPEELTQRVREF 98 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC-CHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccC-CHHHHHHHHHHH
Confidence 5678999998 4567778888777778877777775 454544444444
No 160
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=64.61 E-value=26 Score=22.70 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=42.9
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDF 123 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~ 123 (159)
.+.+.|.|.+..++..+.+.|.+.++++..+.++.. ...-.|.|.|--...|+.+ +.|+..++
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 456778888888888888888777776665554321 1123588899888899886 55565543
No 161
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=63.76 E-value=8.8 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=30.2
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
..+.+++++|.+-..+...+..|...|.++..+.|++
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~ 218 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSM 218 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcH
Confidence 3566899999999999999999988886677777764
No 162
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=63.51 E-value=49 Score=26.83 Aligned_cols=83 Identities=13% Similarity=-0.001 Sum_probs=53.7
Q ss_pred cCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC-CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 27 TEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD-GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 27 ~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
.....+|-..+...+.. .+.+++|.++++.-+..+++.+.+. +..+....|+.. ..+..+|+|+|+-
T Consensus 239 ApTGSGKT~a~~l~ll~-~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPG 306 (666)
T 3o8b_A 239 APTGSGKSTKVPAAYAA-QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYG 306 (666)
T ss_dssp CCTTSCTTTHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHH
T ss_pred eCCchhHHHHHHHHHHH-CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcH
Confidence 34445666554434333 3558999999999999998877543 666777777643 3566789999853
Q ss_pred ---cccccccCCCcEEEEe
Q psy576 106 ---LGRGIDFRTVRLVVNY 121 (159)
Q Consensus 106 ---~~~g~~i~~~~~vi~~ 121 (159)
....++...++++|.-
T Consensus 307 rLl~~~~l~l~~l~~lVlD 325 (666)
T 3o8b_A 307 KFLADGGCSGGAYDIIICD 325 (666)
T ss_dssp HHHHTTSCCTTSCSEEEET
T ss_pred HHHhCCCcccCcccEEEEc
Confidence 1223445567767653
No 163
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=63.41 E-value=8 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=29.8
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.++.++++||.+-..+...+..|...|+ ++..+.|++
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 3556799999998888888889988888 477777764
No 164
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=63.01 E-value=23 Score=21.63 Aligned_cols=114 Identities=9% Similarity=-0.050 Sum_probs=65.5
Q ss_pred eeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeE
Q psy576 22 RMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWI 99 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~v 99 (159)
.....++++..-...+..++.......++..+.+..++.. .+......+.++.-.++.....+.++.++. ....|
T Consensus 16 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~---~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 16 VRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALE---LIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHH---HHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred EEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHH---HHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 3344555555566667777765322233446666664443 444455677888777766666667777665 34567
Q ss_pred EEEeCCcccc-----cccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 100 LITTELLGRG-----IDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 100 lv~t~~~~~g-----~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
++.|...... +.. .+... +.-|.+...+.+++-++.+.+
T Consensus 93 i~~s~~~~~~~~~~~~~~-g~~~~--l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 93 LLISAHDEPAIVYQALQQ-GAAGF--LLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp EEEESCCCHHHHHHHHHT-TCSEE--EETTCCHHHHHHHHHHHHHCC
T ss_pred EEEEccCCHHHHHHHHHc-CCCEE--EecCCCHHHHHHHHHHHHcCC
Confidence 7766543322 222 22322 235778888888887665543
No 165
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=62.76 E-value=40 Score=24.52 Aligned_cols=93 Identities=12% Similarity=0.016 Sum_probs=55.0
Q ss_pred ceeeeecCCCCChHHHH-HHHHh----cCCCCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHH
Q psy576 21 ARMYRETEGAGSPVQAQ-DETIL----LGIEPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l-~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~ 90 (159)
...........+|.... .-++. .....++++.++++.-+..+++.+.+. +..+....++.....
T Consensus 65 ~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 138 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------ 138 (412)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT------
T ss_pred CeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh------
Confidence 34455555557777652 33332 223347999999999999988777652 456777777654321
Q ss_pred HHhcCCeeEEEEeCCcc-------cccccCCCcEEEE
Q psy576 91 SFRTGRIWILITTELLG-------RGIDFRTVRLVVN 120 (159)
Q Consensus 91 ~f~~~~~~vlv~t~~~~-------~g~~i~~~~~vi~ 120 (159)
......+|+|+|.-.- ..++...+++||.
T Consensus 139 -~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 139 -GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp -TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred -hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 1134567999985311 2334456666664
No 166
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=60.02 E-value=41 Score=23.47 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=43.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHH-HHHHHHHHhc--CCeeEEEEe
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQ-RDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~--~~~~vlv~t 103 (159)
.+-.+++...+.+.++++.+.+++.+.++..+..+.+..+ -...++...+ |.+++||..
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNN 91 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNN 91 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3456777777888899999999888888888888875443 3444444433 889999965
No 167
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=59.71 E-value=4.3 Score=24.65 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=26.6
Q ss_pred CEEEEecchHHHHHHHHHHHhC------C-CceEEEecCCC
Q psy576 48 PVLVFVQSKERAQELYNELIYD------G-INVDVIHSDRT 81 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~------~-~~~~~~~~~~~ 81 (159)
+++++|.+-..+...+..|... + .++..+.|++.
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 7999999988888888888776 3 36778888753
No 168
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=59.66 E-value=29 Score=29.48 Aligned_cols=61 Identities=7% Similarity=0.127 Sum_probs=41.8
Q ss_pred ceeeeecCCCCChHHHHH-HHHh-cCCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCC
Q psy576 21 ARMYRETEGAGSPVQAQD-ETIL-LGIEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRT 81 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l~-~~~~-~~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~ 81 (159)
...+.......+|..... .+.. ...+.+++|.++++.-+...++.+.+. +..+..++|+.+
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 345555666677775421 1111 124567999999999999999999875 668899999864
No 169
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=59.13 E-value=13 Score=25.87 Aligned_cols=37 Identities=14% Similarity=0.002 Sum_probs=28.0
Q ss_pred CCCCCEEEEecchH-HHHHHHHHHHhCCC-ceEEEecCC
Q psy576 44 GIEPPVLVFVQSKE-RAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 44 ~~~~~~lif~~~~~-~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
..+.+++++|.+-. .+..++..|...|+ ++..+.|++
T Consensus 79 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 79 RPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp CTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 35667889998765 77888888888887 477777763
No 170
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=58.67 E-value=32 Score=29.64 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=48.3
Q ss_pred eeeeecCCCCChHHHHHHHH-h-cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeE
Q psy576 22 RMYRETEGAGSPVQAQDETI-L-LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWI 99 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~-~-~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 99 (159)
..+.......+|.......+ . ...+.++++.++++.-+...++.+.+....+..++|+.+. +++..|
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~I 269 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGC 269 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSE
T ss_pred CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCE
Confidence 44455555566765532222 1 1246689999999999999999987765578899998752 245667
Q ss_pred EEEe
Q psy576 100 LITT 103 (159)
Q Consensus 100 lv~t 103 (159)
+|+|
T Consensus 270 lV~T 273 (1108)
T 3l9o_A 270 LVMT 273 (1108)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7777
No 171
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=58.56 E-value=8.3 Score=27.12 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCCCEEEEecchHH-HHHHHHHHHhCCC-ceEEEecC
Q psy576 45 IEPPVLVFVQSKER-AQELYNELIYDGI-NVDVIHSD 79 (159)
Q Consensus 45 ~~~~~lif~~~~~~-~~~l~~~l~~~~~-~~~~~~~~ 79 (159)
.+.++++||.+-.. +..++..|...|+ ++..+.|+
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG 121 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGG 121 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCC
Confidence 55679999998665 7788888888887 57777775
No 172
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=58.11 E-value=14 Score=26.61 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=28.0
Q ss_pred CCCCEEEEecchH-HHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKE-RAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~-~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
++.+++|||.+-. .+...+..|+..|+ ++..+.|++
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 5567999999766 78888888888887 477777753
No 173
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=55.94 E-value=28 Score=20.34 Aligned_cols=110 Identities=9% Similarity=0.031 Sum_probs=63.6
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc----CCeeEE
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT----GRIWIL 100 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vl 100 (159)
..++++..-...+...+... +. -+..+.+.. +..+.+......+.++.-.++.....+.++.++. ....|+
T Consensus 7 livdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~---~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (127)
T 3i42_A 7 LIVEDYQAAAETFKELLEML-GF-QADYVMSGT---DALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFV 81 (127)
T ss_dssp EEECSCHHHHHHHHHHHHHT-TE-EEEEESSHH---HHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEE
T ss_pred EEEcCCHHHHHHHHHHHHHc-CC-CEEEECCHH---HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEE
Confidence 33445445556677777653 22 334555544 4444556666778888877776666777777664 345677
Q ss_pred EEeCCcccccccC----CCcEEEEecCCCCHHHHHHHHhhccCCCC
Q psy576 101 ITTELLGRGIDFR----TVRLVVNYDFPSSAISYIHRIGRAGRGGR 142 (159)
Q Consensus 101 v~t~~~~~g~~i~----~~~~vi~~~~~~~~~~~~q~~GR~~R~g~ 142 (159)
+.|....... .. .++. .+.-|.+...+.+++.+..+.+.
T Consensus 82 ~~s~~~~~~~-~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 82 AVSGFAKNDL-GKEACELFDF--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp EEECC-CTTC-CHHHHHHCSE--EEESSCCHHHHHHHHHHHC----
T ss_pred EEECCcchhH-HHHHHHhhHH--heeCCCCHHHHHHHHHHhhccCC
Confidence 7665443332 11 1222 33468899999999998877643
No 174
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=55.65 E-value=25 Score=24.52 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=29.4
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHh-CCC-ceEEEecCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIY-DGI-NVDVIHSDR 80 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~-~~~-~~~~~~~~~ 80 (159)
..+.+++++|.+-..+...+..|.+ .|+ ++..+.|++
T Consensus 224 ~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 224 DNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 3567899999998888888888875 787 477888864
No 175
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=55.07 E-value=20 Score=23.00 Aligned_cols=79 Identities=14% Similarity=-0.016 Sum_probs=45.8
Q ss_pred hHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 33 PVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 33 k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
+.....+++.+ ..+.+++|.|.+.+.++.+-+.|.......-+.|+-..... ...-.|+|+++...
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~---------~~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---------RGGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS---------TTCCSEEEECTTSC---
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC---------CCCCCEEEeCCCCC---
Confidence 34444445442 35788999999999999999999766333333444211100 12345888875421
Q ss_pred ccCCCcEEEEecC
Q psy576 111 DFRTVRLVVNYDF 123 (159)
Q Consensus 111 ~i~~~~~vi~~~~ 123 (159)
..+..+++||++.
T Consensus 92 ~~~~~~vLinL~~ 104 (150)
T 3sxu_A 92 SSSRRDILISLRT 104 (150)
T ss_dssp CCSCCSEEEECCS
T ss_pred CCCcCCEEEECCC
Confidence 1123557777653
No 176
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=55.02 E-value=20 Score=24.99 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred CCCCCEEEEecch-HHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 44 GIEPPVLVFVQSK-ERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 44 ~~~~~~lif~~~~-~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
..+.+++++|.+. ..+..++..|...|+ ++..+.|++
T Consensus 75 ~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 75 ANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp CTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred CCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
Confidence 3456799999875 356777888888887 577787763
No 177
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=54.72 E-value=57 Score=23.49 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=39.4
Q ss_pred CCEEEEecc-----------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 47 PPVLVFVQS-----------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 47 ~~~lif~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
+-+|||++. ..+++.+.+.|+..|+.+. ++..++..+-.+.++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 348999987 6789999999999999864 6667899999999999864
No 178
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=54.43 E-value=16 Score=25.98 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=29.6
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
..+.++++||.+-..+...+..|...|++ +..+.|++
T Consensus 238 ~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~ 275 (296)
T 1rhs_A 238 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSW 275 (296)
T ss_dssp CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 35678999999988888888888888874 77788874
No 179
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=53.31 E-value=15 Score=25.75 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=27.0
Q ss_pred CCCCEEEEecchH-HHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKE-RAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~-~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.+.++++||.+-. .+...+..|...|+ ++..+.|++
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 4567999998866 57778888888887 477777753
No 180
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=53.27 E-value=32 Score=20.21 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=54.5
Q ss_pred eeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 22 RMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
+-++.+.+.+.--.-...+.+.....+++|..+.+.-..+..+.+.+.|+++..+-.+.+..+-++.-.........|--
T Consensus 27 yqvrdvndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrk 106 (134)
T 2lci_A 27 YQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRK 106 (134)
T ss_dssp CEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEE
T ss_pred eeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeee
Confidence 33444444323223344555566778999999999999999998888899988887777777666655555554444433
Q ss_pred Ee
Q psy576 102 TT 103 (159)
Q Consensus 102 ~t 103 (159)
.|
T Consensus 107 vt 108 (134)
T 2lci_A 107 VT 108 (134)
T ss_dssp EC
T ss_pred cC
Confidence 33
No 181
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=52.84 E-value=35 Score=20.44 Aligned_cols=110 Identities=7% Similarity=-0.041 Sum_probs=58.0
Q ss_pred eeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEE
Q psy576 24 YRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILI 101 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv 101 (159)
...++++..-...+...+....+-.++-.+.+.. +....+......+.++.-.++.....+.++.++. ....|++
T Consensus 12 iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~---~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 88 (143)
T 2qv0_A 12 VIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGL---DVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVF 88 (143)
T ss_dssp EEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHH---HHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHH---HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEE
Confidence 3344554455566667776432222332455544 3334455566778888777766566667777765 2344555
Q ss_pred EeCCcc---cccccCCCcEEEEecCCCCHHHHHHHHhhccC
Q psy576 102 TTELLG---RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 102 ~t~~~~---~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
.|.... ..+.. .+.-. +.-|.+...+.+.+.++.+
T Consensus 89 ~s~~~~~~~~~~~~-g~~~~--l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 89 ITAWKEHAVEAFEL-EAFDY--ILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp EESCCTTHHHHHHT-TCSEE--EESSCCHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHhC-CcceE--EeCCCCHHHHHHHHHHHHH
Confidence 554321 11111 22222 2347778887777765443
No 182
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=52.48 E-value=71 Score=23.89 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=46.6
Q ss_pred CChHHHHHHHHhcCCCCCEEEEec-c-hH---HHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEEE
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQ-S-KE---RAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~-~-~~---~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
.+....+.+.+.....++++|.+. . .. ..+.+.+.|.+.++.+..+.+. -+.+.-.+..+.++....+++|+
T Consensus 28 ~g~l~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 107 (407)
T 1vlj_A 28 RGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLG 107 (407)
T ss_dssp TTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEE
T ss_pred cCHHHHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345556666666533357777775 2 23 3677788887777777666552 34556667777787777777776
Q ss_pred e
Q psy576 103 T 103 (159)
Q Consensus 103 t 103 (159)
-
T Consensus 108 v 108 (407)
T 1vlj_A 108 V 108 (407)
T ss_dssp E
T ss_pred e
Confidence 4
No 183
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=51.57 E-value=23 Score=26.60 Aligned_cols=36 Identities=14% Similarity=0.369 Sum_probs=28.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
...++++||.+-..+...+..|...|+ ++..+.|++
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~ 238 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGW 238 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCH
Confidence 456799999998888888888888787 577777764
No 184
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=51.55 E-value=8.3 Score=27.47 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=41.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
+.+-+|||+++..+++.+.+.|...|+.+ .++..++.++-.+.++.|..
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEV-QKFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEE-EEEESCBHHHHHHHHHHHHT
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHh
Confidence 34569999999999999999999999886 45667889999999999865
No 185
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=50.98 E-value=60 Score=22.63 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=41.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCH-HHHHHHHHHHhc--CCeeEEEEeC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQ-KQRDNVVRSFRT--GRIWILITTE 104 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~r~~~~~~f~~--~~~~vlv~t~ 104 (159)
.+-++++...+.+.+++..+.+.+.+.++..+..+.+. ++-...++...+ |.+++||..-
T Consensus 32 ~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 32 AGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 34466666667777888888888888888888887754 344455555443 7899999753
No 186
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=50.97 E-value=12 Score=29.09 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
++.++++||.+-..+...+..|++.|+++..+.|++
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~ 558 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGY 558 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChH
Confidence 456799999999999999999999988888888875
No 187
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=50.84 E-value=37 Score=20.14 Aligned_cols=107 Identities=8% Similarity=0.049 Sum_probs=60.2
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEE
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILIT 102 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~ 102 (159)
..++++..-...+...+.. .+..+..+.+..++. +.+......+.++.-.++.....+.++.++. ....|++.
T Consensus 11 livdd~~~~~~~l~~~L~~--~~~~v~~~~~~~~a~---~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (137)
T 3hdg_A 11 LIVEDDTDAREWLSTIISN--HFPEVWSAGDGEEGE---RLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVI 85 (137)
T ss_dssp EEECSCHHHHHHHHHHHHT--TCSCEEEESSHHHHH---HHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHh--cCcEEEEECCHHHHH---HHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 3344444555667777765 233345566555443 3344445677788777776666667776665 34567776
Q ss_pred eCCccc-----ccccCCCcEEEEecCCCCHHHHHHHHhhccC
Q psy576 103 TELLGR-----GIDFRTVRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 103 t~~~~~-----g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
|..... .+... ++. .+.-|.+...+.+++.++.+
T Consensus 86 s~~~~~~~~~~~~~~g-~~~--~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 86 SAFSEMKYFIKAIELG-VHL--FLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CCCCCHHHHHHHHHHC-CSE--ECCSSCCHHHHHHHHHHHHH
T ss_pred ecCcChHHHHHHHhCC-cce--eEcCCCCHHHHHHHHHHHHH
Confidence 654321 11211 121 23457788888887766654
No 188
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=50.18 E-value=19 Score=22.78 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=20.5
Q ss_pred CCCEEE-Ee-cchHHHHH----HHHHHHhCCC---ceEEEecCCC
Q psy576 46 EPPVLV-FV-QSKERAQE----LYNELIYDGI---NVDVIHSDRT 81 (159)
Q Consensus 46 ~~~~li-f~-~~~~~~~~----l~~~l~~~~~---~~~~~~~~~~ 81 (159)
+.+++| +| .+-..+.. +...|.+.|+ ++..+.||+.
T Consensus 67 ~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 67 KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred CCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 344445 58 44333333 3366766675 6778888753
No 189
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=49.70 E-value=8.2 Score=23.74 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=26.3
Q ss_pred CCCEEEEecchHH---------HHHHHHHHHhCCCceEEEecCC
Q psy576 46 EPPVLVFVQSKER---------AQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 46 ~~~~lif~~~~~~---------~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
..++++||.+-.. +..+...|...|+++..+.|++
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCH
Confidence 4679999987654 3456677777887888888874
No 190
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=49.52 E-value=46 Score=26.74 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=50.3
Q ss_pred ceeeeecCCCCChHHHHHHHHh---cCCCCCEEEEecchHHHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 21 ARMYRETEGAGSPVQAQDETIL---LGIEPPVLVFVQSKERAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l~~~~~---~~~~~~~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.......+...+|.......+. ...+.++++.++++.-+...++.++. .+.++..++|+....++. +
T Consensus 47 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-----~-- 119 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW-----L-- 119 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG-----G--
T ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh-----c--
Confidence 3455555555777766433221 11357899999999999998888742 377889999987654321 1
Q ss_pred CCeeEEEEeC
Q psy576 95 GRIWILITTE 104 (159)
Q Consensus 95 ~~~~vlv~t~ 104 (159)
+..+|+|+|+
T Consensus 120 ~~~~Iiv~Tp 129 (715)
T 2va8_A 120 KNYDIIITTY 129 (715)
T ss_dssp GGCSEEEECH
T ss_pred CCCCEEEEcH
Confidence 2566777775
No 191
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=48.56 E-value=16 Score=28.71 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=30.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
++.++++||.+-..+...+..|++.|+++..+.|++
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~ 575 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGF 575 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchH
Confidence 456799999999999999999999998877888875
No 192
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=48.39 E-value=35 Score=19.23 Aligned_cols=107 Identities=7% Similarity=-0.045 Sum_probs=54.2
Q ss_pred cCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc----CCeeEEEE
Q psy576 27 TEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT----GRIWILIT 102 (159)
Q Consensus 27 ~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~ 102 (159)
++.+......+...+... +-. +..+.+...+. ..+......+.++.-.++.....+.++.++. ....+++.
T Consensus 7 v~~~~~~~~~l~~~l~~~-g~~-v~~~~~~~~~~---~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~ 81 (119)
T 2j48_A 7 LEEEDEAATVVCEMLTAA-GFK-VIWLVDGSTAL---DQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLF 81 (119)
T ss_dssp ECCCHHHHHHHHHHHHHT-TCE-EEEESCHHHHH---HHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEE
T ss_pred EeCCHHHHHHHHHHHHhC-CcE-EEEecCHHHHH---HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEE
Confidence 344344455566666642 223 34555544333 3344445667777766655555556666654 23455555
Q ss_pred eCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccC
Q psy576 103 TELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 103 t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
|...... ..-.....-.+..|.+...+.+++.++.+
T Consensus 82 ~~~~~~~-~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 82 LGEPPVD-PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp ESSCCSS-HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred eCCCCch-hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 5433221 11111111123457778888888876653
No 193
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=47.23 E-value=89 Score=23.51 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=54.6
Q ss_pred ceeeeecCCCCChHHH-HHHHHhcC----CCCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHH
Q psy576 21 ARMYRETEGAGSPVQA-QDETILLG----IEPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~-l~~~~~~~----~~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~ 90 (159)
...+.......+|... +..++... ...++||.++++.-+..+++.+... +..+....++.....
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 205 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER------ 205 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT------
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc------
Confidence 3445555555778776 33444321 2237999999999998887766542 455666666543211
Q ss_pred HHhcCCeeEEEEeCCcc-------cccccCCCcEEEE
Q psy576 91 SFRTGRIWILITTELLG-------RGIDFRTVRLVVN 120 (159)
Q Consensus 91 ~f~~~~~~vlv~t~~~~-------~g~~i~~~~~vi~ 120 (159)
......+|+|+|.-.- ..+++..+.+||.
T Consensus 206 -~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 206 -GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp -TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred -cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 1123457999985322 2455566776664
No 194
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=46.00 E-value=62 Score=22.44 Aligned_cols=74 Identities=8% Similarity=0.033 Sum_probs=45.8
Q ss_pred eeecCCCCChHHHHHHHHh---cCCCCCEEEEecchHHHHHHHHHHHhCC----CceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 24 YRETEGAGSPVQAQDETIL---LGIEPPVLVFVQSKERAQELYNELIYDG----INVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~---~~~~~~~lif~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
....+...+|......++. .....++|+.+++..-+....+.+.+.+ ..+..++++..... -....
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 204 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKND 204 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTT
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccC
Confidence 3344444677666443332 1134489999999998888888776542 35667777654322 11245
Q ss_pred eeEEEEeC
Q psy576 97 IWILITTE 104 (159)
Q Consensus 97 ~~vlv~t~ 104 (159)
..|+|+|.
T Consensus 205 ~~I~v~T~ 212 (282)
T 1rif_A 205 APVVVGTW 212 (282)
T ss_dssp CSEEEECH
T ss_pred CcEEEEch
Confidence 67999985
No 195
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=45.97 E-value=20 Score=27.99 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=30.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEec-CC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHS-DR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~-~~ 80 (159)
++.+++++|.+-..+...+.+|...|+++..+.| ++
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~ 357 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 357 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCCh
Confidence 4568999999988888888889999998888888 65
No 196
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=45.67 E-value=77 Score=22.36 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=39.1
Q ss_pred CCEEEEecc-------------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 47 PPVLVFVQS-------------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 47 ~~~lif~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
+-+|||.+. ..+++.+.+.|+..|+.+ .++..++..+-.+.++.|.+.
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEecCcCHHHHHHHHHHHHHh
Confidence 447888774 678999999999999986 456678899999999999763
No 197
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=45.55 E-value=56 Score=20.73 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 55 SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 55 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
+...++.+.+.+...++.+ .++..++.++-.+.++.|.+.
T Consensus 39 t~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHHh
Confidence 4458889999999999986 456668888888999988763
No 198
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=45.48 E-value=46 Score=19.75 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=64.4
Q ss_pred eeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc----CCeeE
Q psy576 24 YRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT----GRIWI 99 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~v 99 (159)
...++++......+..++... +-. +..+.+.. +..+.+......+.++.-.++.....+.++.++. ....|
T Consensus 9 iLivdd~~~~~~~l~~~l~~~-g~~-v~~~~~~~---~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 9 ILICEDDPDIARLLNLMLEKG-GFD-SDMVHSAA---QALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-TCE-EEEECSHH---HHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred EEEEcCCHHHHHHHHHHHHHC-CCe-EEEECCHH---HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 334455455566677777652 223 45555544 3444556666778888777777667777777765 35677
Q ss_pred EEEeCCccccc---ccCCCcEEEEecCCCCHHHHHHHHhhccC
Q psy576 100 LITTELLGRGI---DFRTVRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 100 lv~t~~~~~g~---~i~~~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
++.|....... ..-.....-.+.-|.+...+.+++.++.+
T Consensus 84 i~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 84 VVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp EEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 77775432211 11111111234467888888888876654
No 199
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=45.40 E-value=76 Score=22.20 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=37.5
Q ss_pred CCEEEEecc-------------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 47 PPVLVFVQS-------------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 47 ~~~lif~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
+-+|||++. ..+++.+.+.|+..|+.+ .++..++.++-.+.++.|...
T Consensus 21 g~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 21 GMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEV-TVYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp EEEEEEEECCC-----------CCHHHHHHHHHHHTTCEE-EEEEECSHHHHHHHHHHHHTS
T ss_pred cEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 347777663 357889999999999986 466678888999999999763
No 200
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=45.36 E-value=22 Score=28.62 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=49.0
Q ss_pred eeeeecCCCCChHHHHH-HHHhc-CCCCCEEEEecchHHHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 22 RMYRETEGAGSPVQAQD-ETILL-GIEPPVLVFVQSKERAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~-~~~~~-~~~~~~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
..+...+...+|..... -++.. ..+.++++.++++.-+...++.++. .+.++..++|+....++ ..+.
T Consensus 42 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~ 114 (702)
T 2p6r_A 42 NLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGD 114 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTT
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccC
Confidence 33444444456655532 22211 1357899999999999999988743 26789999998755432 1246
Q ss_pred eeEEEEeC
Q psy576 97 IWILITTE 104 (159)
Q Consensus 97 ~~vlv~t~ 104 (159)
.+|+|+|+
T Consensus 115 ~~Iiv~Tp 122 (702)
T 2p6r_A 115 CDIIVTTS 122 (702)
T ss_dssp CSEEEEEH
T ss_pred CCEEEECH
Confidence 77899885
No 201
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=45.11 E-value=75 Score=22.30 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecC-C-CHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSD-R-TQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~-~-~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
+..++|+|.+...+++....+-+.|.++.....+ + +++-++.+.+.-+.|..++.+.+-.
T Consensus 60 ~pD~VVe~A~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGA 121 (253)
T 1j5p_A 60 DVSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGA 121 (253)
T ss_dssp TCCEEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCc
Confidence 3458888888887777555555566666555443 2 4444455555555666666555543
No 202
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=45.05 E-value=61 Score=21.01 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 56 KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 56 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
...++.+.+.|...++.+ .++..++..+-.+.++.|..
T Consensus 54 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHH
Confidence 567888999999999987 55667888888889998865
No 203
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=44.60 E-value=81 Score=22.32 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=39.1
Q ss_pred CCCCEEEEecc--------------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 45 IEPPVLVFVQS--------------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 45 ~~~~~lif~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
+.+-+|||++. ..+++.+.+.|+..|+.+. ++..++.++-.+.++.|..
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVST 82 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 34558888874 3689999999999999865 5667889898888988865
No 204
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=44.47 E-value=33 Score=25.73 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=33.2
Q ss_pred HHHHHHh---cCCCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 36 AQDETIL---LGIEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 36 ~l~~~~~---~~~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.|.+.+. .....++++||.+-..+...+..|...|+ ++..+.|++
T Consensus 345 ~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 345 DITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp HHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 4445543 23456799999999889888888988888 577777763
No 205
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=44.33 E-value=15 Score=22.58 Aligned_cols=108 Identities=9% Similarity=0.030 Sum_probs=66.8
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
-.++++..-...+...+... +..++-.+.+-.++ .+.+.+..+...++.=.||...-.++.+..++....|++.|.
T Consensus 12 LiVdD~~~~~~~l~~~L~~~-G~~v~~~a~~g~eA---l~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 12 LVVEDESMIAMLIEDTLCEL-GHEVAATASRMQEA---LDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATG 87 (123)
T ss_dssp EEESSSTTTSHHHHHHHHHH-CCCCCBCSCCHHHH---HHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCT
T ss_pred EEEeCCHHHHHHHHHHHHHC-CCEEEEEECCHHHH---HHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEec
Confidence 34455556666777777652 23332233444433 344566677788888888877777777877776777888775
Q ss_pred Cccccccc--CCCcEEEEecCCCCHHHHHHHHhhccC
Q psy576 105 LLGRGIDF--RTVRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 105 ~~~~g~~i--~~~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
........ .... .+.-|.+...+...+.|+.|
T Consensus 88 ~~~~~~~~~~g~~~---yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 88 YGSKGLDTRYSNIP---LLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp TCTTSCCSSSCSCS---CBCSSSSHHHHHHHHSTTCS
T ss_pred CccHHHHHhCCCCc---EEECCCCHHHHHHHHHHHHh
Confidence 44333322 1122 24568889999888887765
No 206
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=44.21 E-value=85 Score=22.45 Aligned_cols=64 Identities=6% Similarity=0.060 Sum_probs=41.7
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccccc
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDF 112 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i 112 (159)
...++|-+...+.+......+.+.+.++..-+.++++++..++.+ ..+ +..++++++. +.|+++
T Consensus 88 ~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~-aa~-~~~~~~a~N~-SiGv~l 151 (288)
T 3ijp_A 88 NTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIAD-FAK-YTTIVKSGNM-SLGVNL 151 (288)
T ss_dssp SCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHH-HHT-TSEEEECSCC-CHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-HhC-cCCEEEECCC-cHHHHH
Confidence 346888677777777777777788888877777787766554444 333 3667666653 335544
No 207
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=44.07 E-value=66 Score=21.15 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=38.3
Q ss_pred CCCEEEEecc-----------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 46 EPPVLVFVQS-----------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 46 ~~~~lif~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.+.+||+++. ...++.+.+.|+..++.+. ++..++..+-.+.++.|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 3458888875 3789999999999999975 5666888888999998854
No 208
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=42.99 E-value=71 Score=23.14 Aligned_cols=48 Identities=8% Similarity=0.017 Sum_probs=39.0
Q ss_pred CCCEEEEecch------------HHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 46 EPPVLVFVQSK------------ERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 46 ~~~~lif~~~~------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.+-+|||++.. .+++.+.+.|+..|+.+ .++..++..+-.+.++.|.+
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHHH
Confidence 44588888752 78899999999999986 56778899999999998864
No 209
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=42.58 E-value=50 Score=19.35 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=56.7
Q ss_pred cCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHh-------CCCceEEEecCCCHHHHHHHHHHHhcC----
Q psy576 27 TEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIY-------DGINVDVIHSDRTQKQRDNVVRSFRTG---- 95 (159)
Q Consensus 27 ~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~-------~~~~~~~~~~~~~~~~r~~~~~~f~~~---- 95 (159)
++++..-...+...+........+..+.+..++ .+.+.. ....+.++.-.++.....+.++.++..
T Consensus 8 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a---~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ 84 (140)
T 1k68_A 8 VEDNKADIRLIQEALANSTVPHEVVTVRDGMEA---MAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLK 84 (140)
T ss_dssp ECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHH---HHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGG
T ss_pred EeCCHHHHHHHHHHHHhcCCCceEEEECCHHHH---HHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccc
Confidence 344344455566777653222245556655433 344444 456677777777655555666666552
Q ss_pred CeeEEEEeCCcc-----cccccCCCcEEEEecCCCCHHHHHHHHhhccC
Q psy576 96 RIWILITTELLG-----RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 96 ~~~vlv~t~~~~-----~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
...|++.|.... ..+.. .+.-+ +.-|.+...+.+.+.++.+
T Consensus 85 ~~pii~ls~~~~~~~~~~~~~~-g~~~~--l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 85 RIPVVVLSTSINEDDIFHSYDL-HVNCY--ITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GSCEEEEESCCCHHHHHHHHHT-TCSEE--EECCSSHHHHHHHHHHHHH
T ss_pred cccEEEEecCCcHHHHHHHHHh-chhhe--ecCCCCHHHHHHHHHHHHH
Confidence 345666554332 11222 22222 2347788888777766543
No 210
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=42.36 E-value=80 Score=21.61 Aligned_cols=42 Identities=10% Similarity=0.236 Sum_probs=33.8
Q ss_pred HHHhcCCCCCEEEEec-----chHHHHHHHHHHHhCCCceEEEecCC
Q psy576 39 ETILLGIEPPVLVFVQ-----SKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 39 ~~~~~~~~~~~lif~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
++.......+++||++ |.++..++.++....+.++.++-.+.
T Consensus 154 ki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vL~IE~~~ 200 (220)
T 3s5u_A 154 QVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRV 200 (220)
T ss_dssp HHHHHCTTCCEEEEESGGGGCCHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEeccc
Confidence 3334567889999999 77899999999988888888887763
No 211
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=42.33 E-value=31 Score=25.61 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=26.1
Q ss_pred CCCCEEEEe-cch-HHHHHHHHHHHhCCCceEEEecCCC
Q psy576 45 IEPPVLVFV-QSK-ERAQELYNELIYDGINVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~-~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (159)
++.++++|| .+- ..+..++..|+..|+++..+.|++.
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 567899999 433 2333667777777778888999863
No 212
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=42.18 E-value=96 Score=22.44 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=39.8
Q ss_pred CCCEEEEecc-------------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 46 EPPVLVFVQS-------------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 46 ~~~~lif~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
.+-+|||.+. ...++.+.+.|+..|+.+ .++..++..+-.+.++.|...
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 3458888874 678999999999999986 456678899999999999753
No 213
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=42.14 E-value=73 Score=21.08 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=39.2
Q ss_pred CCCCEEEEecc--------------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 45 IEPPVLVFVQS--------------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 45 ~~~~~lif~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
+.+-+|||++. ...++.+.+.|...++.+. ++..++.++-.+.++.|...
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHhhh
Confidence 34558898874 2588999999999999875 55578888998999988763
No 214
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=41.16 E-value=55 Score=27.90 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=41.0
Q ss_pred eeeeecCCCCChHHHHHHHH-h-cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCH
Q psy576 22 RMYRETEGAGSPVQAQDETI-L-LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQ 82 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~-~-~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (159)
..+.......+|.....-.+ . ...+.++++.++++.-+...++.+.+....+..++|+.+.
T Consensus 103 ~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~ 165 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI 165 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEE
T ss_pred CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCcc
Confidence 45555566677776532211 1 1245789999999999998888887653378889998653
No 215
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=41.13 E-value=86 Score=21.62 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHhcCCCCCEEEEec-----chHHHHHHHHHHHhCCCceEEEecC
Q psy576 39 ETILLGIEPPVLVFVQ-----SKERAQELYNELIYDGINVDVIHSD 79 (159)
Q Consensus 39 ~~~~~~~~~~~lif~~-----~~~~~~~l~~~l~~~~~~~~~~~~~ 79 (159)
++.......+++||++ |.++..++.+++...+.++.++-.+
T Consensus 154 ki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vLlIE~~ 199 (229)
T 3qhq_A 154 QVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPR 199 (229)
T ss_dssp HHHHHCTTCCEEEEESCGGGCCHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 3334567789999999 6788999999988888888888765
No 216
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=41.04 E-value=30 Score=23.42 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=27.4
Q ss_pred CCCEEEEecchH-HHHHHHHHHHhCCC-ceEEEecC
Q psy576 46 EPPVLVFVQSKE-RAQELYNELIYDGI-NVDVIHSD 79 (159)
Q Consensus 46 ~~~~lif~~~~~-~~~~l~~~l~~~~~-~~~~~~~~ 79 (159)
+.+++++|.+-. .+..++..|. .|+ ++..+.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 678999999876 7888888888 887 47888888
No 217
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=40.87 E-value=16 Score=26.07 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=28.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|...|+ ++..+.|++
T Consensus 253 ~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~ 289 (302)
T 3olh_A 253 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSW 289 (302)
T ss_dssp TTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHH
T ss_pred CCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 456899999988777788888888887 566777764
No 218
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=40.59 E-value=1.1e+02 Score=22.49 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhCCCceEE
Q psy576 58 RAQELYNELIYDGINVDV 75 (159)
Q Consensus 58 ~~~~l~~~l~~~~~~~~~ 75 (159)
.++++.+.+++.+....+
T Consensus 74 ~v~~~~~~~~~~~~d~II 91 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVI 91 (370)
T ss_dssp HHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHhcCCCEEE
Confidence 444444444444433333
No 219
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=39.78 E-value=57 Score=19.21 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=58.0
Q ss_pred ecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEe
Q psy576 26 ETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 26 ~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t 103 (159)
.++++..-...+..++.....-..+..+.+..++. +.+......+.++.-.++.....+.++.++. ....|++.|
T Consensus 8 ivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al---~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls 84 (133)
T 3b2n_A 8 IAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAM---KLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVT 84 (133)
T ss_dssp EECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHH---HHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred EECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHH---HHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEe
Confidence 34444444555666666422112344555555443 3344444567777766665555556666654 345666666
Q ss_pred CCcc-----cccccCCCcEEEEecCCCCHHHHHHHHhhccCC
Q psy576 104 ELLG-----RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRG 140 (159)
Q Consensus 104 ~~~~-----~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 140 (159)
.... ..+... +.-. +.-|.+...+.+++.++.+.
T Consensus 85 ~~~~~~~~~~~~~~g-a~~~--l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 85 TFKRPGYFEKAVVND-VDAY--VLKERSIEELVETINKVNNG 123 (133)
T ss_dssp SCCCHHHHHHHHHTT-CSEE--EETTSCHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHcC-CcEE--EECCCCHHHHHHHHHHHHcC
Confidence 5432 222222 2222 23578899999888877654
No 220
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=39.70 E-value=40 Score=26.25 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
++.++++||.+...+...+..|...|+ ++..+.|++
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 567899999988888899999998887 577777763
No 221
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=39.08 E-value=64 Score=19.52 Aligned_cols=109 Identities=4% Similarity=-0.067 Sum_probs=53.1
Q ss_pred ecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHh-CCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEE
Q psy576 26 ETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIY-DGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILIT 102 (159)
Q Consensus 26 ~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~ 102 (159)
.++++..-...+...+....+...+..+.+... ....+.. ....+.++.-.++.....+.++.++. ....|++.
T Consensus 8 ivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~---a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 84 (154)
T 2qsj_A 8 IVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSD---ALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALI 84 (154)
T ss_dssp EECSCHHHHHHHHHHHHHHCTTEEEEEESSHHH---HHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC
T ss_pred EEcCCHHHHHHHHHHHHhCCCceEEEEecCHHH---HHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEE
Confidence 344444455556666665323334455665543 3444555 55677777766665555566666654 34566665
Q ss_pred eCCccc-----ccccCCCcEEEEecCCCCHHHHHHHHhhccCC
Q psy576 103 TELLGR-----GIDFRTVRLVVNYDFPSSAISYIHRIGRAGRG 140 (159)
Q Consensus 103 t~~~~~-----g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 140 (159)
|..... .+... +.- .+.-|.+...+.+.+.++.+.
T Consensus 85 s~~~~~~~~~~~~~~g-~~~--~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 85 SGETDHELIRAALEAG-ADG--FIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp -----CHHHHHHHHTT-CCB--BCCTTSCHHHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHcc-CCE--EEeCCCCHHHHHHHHHHHHcC
Confidence 543211 11111 111 234577888888888776554
No 222
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=38.97 E-value=84 Score=23.04 Aligned_cols=70 Identities=7% Similarity=0.127 Sum_probs=43.2
Q ss_pred HHHHHHhcCC-CCCEEEEecchHHHHHHHHHHHhCCCce-EEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCc
Q psy576 36 AQDETILLGI-EPPVLVFVQSKERAQELYNELIYDGINV-DVIHSDRTQKQRDNVVRSFRTGRIWILITTELL 106 (159)
Q Consensus 36 ~l~~~~~~~~-~~~~lif~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 106 (159)
.+.++..... -+-+++|++-..-.+.+.+.+.+.+++. .+++++++..+..++.+.-+.... -||..++.
T Consensus 69 sv~ea~~~~p~~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~-rliGPNc~ 140 (334)
T 3mwd_B 69 NMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGV-TIIGPATV 140 (334)
T ss_dssp SHHHHHHHCTTCCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTC-EEECSSCC
T ss_pred CHHHHhhcCCCCcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC-EEEccCCc
Confidence 3555555432 2446667777776678888777677754 455999998766666665555444 34444443
No 223
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=38.32 E-value=1.1e+02 Score=22.22 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=37.0
Q ss_pred CCCCEEEEecch-------HHHHHHHHHHHhCCCceEEE------ec--CCCHHHH-HHHHHHHhcCCeeEEEEeC
Q psy576 45 IEPPVLVFVQSK-------ERAQELYNELIYDGINVDVI------HS--DRTQKQR-DNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 45 ~~~~~lif~~~~-------~~~~~l~~~l~~~~~~~~~~------~~--~~~~~~r-~~~~~~f~~~~~~vlv~t~ 104 (159)
++..+-|++++. ...+...+.|++.|+++..- ++ .-++++| .+..+.|.+.+++.++|+.
T Consensus 12 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 12 YGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp TTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 344566666654 34555566787778776542 11 1245555 4555678888999999874
No 224
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=38.28 E-value=23 Score=22.46 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=22.7
Q ss_pred CCCCEEEEec-chHHHHHHHHHH--------HhCCC-ceEEEecCCC
Q psy576 45 IEPPVLVFVQ-SKERAQELYNEL--------IYDGI-NVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~-~~~~~~~l~~~l--------~~~~~-~~~~~~~~~~ 81 (159)
++.+++++|. +-......+..| +..|+ ++..+.|++.
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 4557888998 543333334433 23576 6778889864
No 225
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=37.75 E-value=21 Score=25.73 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=32.7
Q ss_pred HHHHHHhc-CCCCCEEEEecchHHHHHHHHHHHh-CCCc-eEEEecCC
Q psy576 36 AQDETILL-GIEPPVLVFVQSKERAQELYNELIY-DGIN-VDVIHSDR 80 (159)
Q Consensus 36 ~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~l~~-~~~~-~~~~~~~~ 80 (159)
.|.+.+.. ..+.++++||.+-..+...+..|.+ .|++ +..+.|++
T Consensus 248 ~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~ 295 (318)
T 3hzu_A 248 ELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSW 295 (318)
T ss_dssp HHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHH
T ss_pred HHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 34444432 3456899999999999999998886 7874 77777763
No 226
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=37.60 E-value=55 Score=18.39 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 57 ERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 57 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
+++..+.++|.+.+++...+.=..++..+.++.+..
T Consensus 19 ~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 19 SQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp HHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh
Confidence 444788888988888777776666666666655554
No 227
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=37.59 E-value=18 Score=17.95 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=17.1
Q ss_pred EEecCCCHHHHHHHHHHHhc
Q psy576 75 VIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 75 ~~~~~~~~~~r~~~~~~f~~ 94 (159)
..||+|+..+.++.++.|-+
T Consensus 3 ~~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 3 HKHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CCTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHH
Confidence 45899999999999999864
No 228
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=37.38 E-value=65 Score=19.11 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=44.1
Q ss_pred CCCEEEEecch-HH---HH-HHHHHHHhCCCc-eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEE
Q psy576 46 EPPVLVFVQSK-ER---AQ-ELYNELIYDGIN-VDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVV 119 (159)
Q Consensus 46 ~~~~lif~~~~-~~---~~-~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi 119 (159)
..++++.|.+- .+ +. .+.+.+.+.++. +..-+.. ..+-.. .. .+.+++++|.-+..-++......++
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~--~~~~~~---~~--~~~DlIi~t~~l~~~~~~~~~~~vi 90 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCS--VGEAKG---LA--SNYDIVVASNHLIHELDGRTNGKLI 90 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC--HHHHHH---HG--GGCSEEEEETTTGGGTTTSCSSEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEee--HHHHhh---cc--CCCcEEEECCchHHHhCcCCCceEE
Confidence 35688888854 22 22 455666666776 5444443 222111 11 3467888887766555532223455
Q ss_pred EecCCCCHHHHHHHH
Q psy576 120 NYDFPSSAISYIHRI 134 (159)
Q Consensus 120 ~~~~~~~~~~~~q~~ 134 (159)
....--+..++.+.+
T Consensus 91 ~i~~~l~~~ei~~~i 105 (110)
T 3czc_A 91 GLDNLMDDNEIKTKL 105 (110)
T ss_dssp EESSTTCHHHHHHHH
T ss_pred EeeccCCHHHHHHHH
Confidence 555555666666654
No 229
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=36.97 E-value=29 Score=24.52 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=25.8
Q ss_pred CCCCEEEEecc--hH-HHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQS--KE-RAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~--~~-~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.+.+++|||.+ -. .+..++..|+..|+ ++..+.|++
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 45679999987 33 36677777888877 577777763
No 230
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=36.80 E-value=1e+02 Score=21.30 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=39.2
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH-HHHHHHHHHhc--CCeeEEEEe
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK-QRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--~~~~vlv~t 103 (159)
+..+++...+.+..+++.+.+...+..+..+..++... .-...++.+.+ |.+++||..
T Consensus 56 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnn 116 (276)
T 3r1i_A 56 GAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCN 116 (276)
T ss_dssp TCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 45677788887778888887777666677777777543 33444554433 678888864
No 231
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=36.79 E-value=64 Score=18.90 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=32.3
Q ss_pred CCCCEEEEecc------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHH
Q psy576 45 IEPPVLVFVQS------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 45 ~~~~~lif~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..++++||..+ =..+..+.++|.+.+++...+.=...+..+..+.+.
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 34689999884 568899999999988876666544445544444443
No 232
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=36.75 E-value=18 Score=29.19 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=49.7
Q ss_pred eeeeecCCCCChHHHH-HHHHhc--CCCCCEEEEecchHHHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 22 RMYRETEGAGSPVQAQ-DETILL--GIEPPVLVFVQSKERAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l-~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
..+...+...+|.... ..++.. ..+.++++.++++.-+...++.++. .+.++..++|+.....+. .+
T Consensus 41 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~ 113 (720)
T 2zj8_A 41 NALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LG 113 (720)
T ss_dssp EEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GG
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cC
Confidence 4444455556776553 222211 1356899999999999999888753 378899999987654321 13
Q ss_pred CeeEEEEeC
Q psy576 96 RIWILITTE 104 (159)
Q Consensus 96 ~~~vlv~t~ 104 (159)
+.+|+|+|+
T Consensus 114 ~~~Iiv~Tp 122 (720)
T 2zj8_A 114 KYDIIIATA 122 (720)
T ss_dssp GCSEEEECH
T ss_pred CCCEEEECH
Confidence 567888885
No 233
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=36.44 E-value=1.1e+02 Score=21.28 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 56 KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 56 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
..+++.+.+.|++.|+.+ .++..++..+-.+.++.|.+.
T Consensus 40 ~~D~~~l~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 40 DVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 348899999999999986 456678899999999999764
No 234
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=36.24 E-value=1.3e+02 Score=22.32 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=37.6
Q ss_pred CCCCEEEEecch-------HHHHHHHHHHHhCCCceEEE------ec--CCCHHHH-HHHHHHHhcCCeeEEEEeC
Q psy576 45 IEPPVLVFVQSK-------ERAQELYNELIYDGINVDVI------HS--DRTQKQR-DNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 45 ~~~~~lif~~~~-------~~~~~l~~~l~~~~~~~~~~------~~--~~~~~~r-~~~~~~f~~~~~~vlv~t~ 104 (159)
++..+-|++++. ...+...+.|++.|+++.+- ++ .-++++| .+..+.|.+.+++.++|+.
T Consensus 42 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 42 VGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp TTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 345566777663 34555566788888776533 11 1245555 4555678888999999874
No 235
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=36.14 E-value=1.1e+02 Score=21.52 Aligned_cols=62 Identities=8% Similarity=0.167 Sum_probs=40.3
Q ss_pred CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 47 PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
..++|-+...+.+......+.+.+.++..-+.++++++..++.+. .+ +..++++++. +.|++
T Consensus 74 ~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~a-a~-~~~vv~a~N~-s~Gv~ 135 (272)
T 4f3y_A 74 ADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAA-GE-KIALVFSANM-SVGVN 135 (272)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHH-TT-TSEEEECSCC-CHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-hc-cCCEEEECCC-CHHHH
Confidence 457887777777777777777788887777777887665554443 33 3556666553 33544
No 236
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=36.09 E-value=78 Score=24.27 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=48.2
Q ss_pred eeeeecCCCCChHHH-HHHHHh---c-CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETIL---L-GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~---~-~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
..+.......+|... +..++. . ....++|+.++++.-+..+++.+.+. +..+....++.... -
T Consensus 160 ~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 231 (508)
T 3fho_A 160 NMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------G 231 (508)
T ss_dssp CEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-----------------
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------c
Confidence 344444555677765 333332 2 23447999999999999998888664 22333333321111 1
Q ss_pred hcCCeeEEEEeCCc-c-----cccccCCCcEEEE
Q psy576 93 RTGRIWILITTELL-G-----RGIDFRTVRLVVN 120 (159)
Q Consensus 93 ~~~~~~vlv~t~~~-~-----~g~~i~~~~~vi~ 120 (159)
.....+|+|+|.-. . ..++...+++||.
T Consensus 232 ~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 232 AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp -CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 12356799988432 1 1345556776664
No 237
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=35.34 E-value=1.1e+02 Score=21.18 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=39.6
Q ss_pred CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC-CeeEEEEeCC
Q psy576 47 PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG-RIWILITTEL 105 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~t~~ 105 (159)
..++|=|.+.+........+.+.+.++.+-+-++++++...+.+.-+.+ ...++++++.
T Consensus 46 ~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~ 105 (245)
T 1p9l_A 46 TEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF 105 (245)
T ss_dssp CCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCC
T ss_pred CcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 3577744466666777777777888877767778887666555555544 6677777663
No 238
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=35.29 E-value=67 Score=18.65 Aligned_cols=111 Identities=14% Similarity=-0.013 Sum_probs=57.3
Q ss_pred ecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC-CCceEEEecCCCH-HHHHHHHHHHhc--CCeeEEE
Q psy576 26 ETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD-GINVDVIHSDRTQ-KQRDNVVRSFRT--GRIWILI 101 (159)
Q Consensus 26 ~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~-~~r~~~~~~f~~--~~~~vlv 101 (159)
.++++..-...+...+.. .+-.+ +.+.+.. +....+... ...+.++.-.++. ....+.++.++. ....|++
T Consensus 10 ivdd~~~~~~~l~~~L~~-~g~~v-~~~~~~~---~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 10 LADDEAILLLDFESTLTD-AGFLV-TAVSSGA---KAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp EECSSHHHHHHHHHHHHH-TTCEE-EEESSHH---HHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred EEcCcHHHHHHHHHHHHH-cCCEE-EEECCHH---HHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 344444445556666664 22233 3455544 333445554 5677777766654 444555555544 3456666
Q ss_pred EeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 102 TTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 102 ~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
.|.......-......--.+.-|.+...+.+++.++.+.+
T Consensus 85 ~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 85 ISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred EeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcC
Confidence 5543321111111110012345788999988888777654
No 239
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=35.02 E-value=68 Score=18.67 Aligned_cols=110 Identities=4% Similarity=-0.063 Sum_probs=64.1
Q ss_pred ecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEe
Q psy576 26 ETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 26 ~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t 103 (159)
.++++......+..++... ...+..+.+.+.+ ...+... ..+.++.-.++.....+.++.+++ ....|++.|
T Consensus 8 ivdd~~~~~~~l~~~L~~~--~~~v~~~~~~~~~---~~~~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (135)
T 3eqz_A 8 IVDDDTLTCNLLKTIVEPI--FGNVEAFQHPRAF---LTLSLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILIS 81 (135)
T ss_dssp EECSCHHHHHHHHHHHTTT--CSCEEEESCHHHH---TTSCCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EEeCCHHHHHHHHHHHHhh--cceeeeecCHHHH---HHhhccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEE
Confidence 3444445556666777653 3344555554433 2333344 677788877887777777877765 345677666
Q ss_pred CCccc------cc-ccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 104 ELLGR------GI-DFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 104 ~~~~~------g~-~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
..... .. ..-.....-.+.-|.+...+.+.+.++...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 82 GYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp SSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred eccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 54431 10 0112222223456889999999998887654
No 240
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=34.81 E-value=96 Score=22.66 Aligned_cols=61 Identities=7% Similarity=0.067 Sum_probs=41.8
Q ss_pred CCCEEE---EecchHHHHHHHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 46 EPPVLV---FVQSKERAQELYNELIYDGI---NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 46 ~~~~li---f~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
++.++| .+.|-.++.+..+.|++.|. .+...|+-++.. .++.+.+..+.-+++|+.....-
T Consensus 213 gk~viIVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~~~~----a~e~l~~~~i~~vv~t~tip~~~ 279 (326)
T 3s5j_B 213 DRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGP----AISRINNACFEAVVVTNTIPQED 279 (326)
T ss_dssp TSEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEECCCTT----HHHHHHHSCCSEEEEETTSCCHH
T ss_pred CCEEEEEccccCCcHHHHHHHHHHHHcCCCEEEEEEEecccCch----HHHHHhhCCCCEEEEecCCCChh
Confidence 344555 45677888888999988765 355667766654 34556667788899998876543
No 241
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=34.36 E-value=29 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=29.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|+..|++ +..+.|++
T Consensus 426 ~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~ 462 (474)
T 3tp9_A 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGY 462 (474)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChH
Confidence 4567999999999999999999888874 77777764
No 242
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=34.28 E-value=1.2e+02 Score=21.31 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=37.9
Q ss_pred CCCEEEEecc--------------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 46 EPPVLVFVQS--------------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 46 ~~~~lif~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.+-+|||++. ..+++.+.+.|+..|+.+ .++..++.++-.+.++.|.+
T Consensus 21 rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 21 CGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMV-EVKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp CEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHH
T ss_pred ccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEEcCCCHHHHHHHHHHHHH
Confidence 3458888775 348899999999999886 45667888899999999865
No 243
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=33.97 E-value=1e+02 Score=20.29 Aligned_cols=116 Identities=10% Similarity=-0.045 Sum_probs=65.9
Q ss_pred eeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc---CCeeEE
Q psy576 24 YRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT---GRIWIL 100 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vl 100 (159)
...++++..-...+..++....+-.++..+. ...+.+...+......+.++.-.|+.....+.++.++. ....|+
T Consensus 10 IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~--~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii 87 (225)
T 3klo_A 10 VRMLSDVCMQSRLLKEALESKLPLALEITPF--SELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEV 87 (225)
T ss_dssp EEEESCCSHHHHHHHHHHHHHSSEEEEEECG--GGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEEcCcHHHHHHHHHHHhhCCCceEEEEeC--CcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEE
Confidence 4445565566667777777432333333322 22333433344555678888888888888888887765 356677
Q ss_pred EEeCCccccccc--CCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 101 ITTELLGRGIDF--RTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 101 v~t~~~~~g~~i--~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
+.|.......-. -..-..-.+.-|.+...+..++.++.+.+
T Consensus 88 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 88 IINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp EEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred EEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 766433211111 11111112346888999988887776543
No 244
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=33.67 E-value=1.1e+02 Score=20.75 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=40.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH-HHHHHHHHHhc--CCeeEEEEe
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK-QRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--~~~~vlv~t 103 (159)
.+.++++...+.+.++++...+.+.+..+..+..++... .-...++...+ |.+++||..
T Consensus 29 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n 90 (257)
T 3imf_A 29 EGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINN 90 (257)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 345677888888888888887766666777888887543 33444554433 678888865
No 245
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=33.17 E-value=1.4e+02 Score=21.89 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=41.6
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecchH----HHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSKE----RAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~~----~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
+....+.+.+.....++++|.+...- ..+.+.+.|.+.++.+..+.+. -+.+.-.+..+.++....+++|+-
T Consensus 17 g~~~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIav 95 (386)
T 1rrm_A 17 GAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAI 95 (386)
T ss_dssp TGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEe
Confidence 44555556655433356777665321 3566777777777766555432 245555666777776666677753
No 246
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=33.10 E-value=64 Score=20.27 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=28.4
Q ss_pred HHHHh-CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 64 NELIY-DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 64 ~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
++|++ .|+++..+... +.+-+..+.+.+.+|+++.+|.|..
T Consensus 42 ~~L~e~~Gl~v~~v~k~-~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 42 RRIEEATGLTVEKLLSG-PLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HHHHHHHCCCCEECSCG-GGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHhhCceEEEEEec-CCCCcchHHHHHHCCCccEEEEccC
Confidence 33444 57777766532 2134567999999999999998864
No 247
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=33.06 E-value=1.2e+02 Score=20.76 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=41.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHH-HHHHHHHHhc--CCeeEEEEe
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQ-RDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~--~~~~vlv~t 103 (159)
.+.++++...+.+.++++.+.+.+.+..+.++..++...+ -...++...+ |.+++||..
T Consensus 34 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n 95 (264)
T 3ucx_A 34 QGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINN 95 (264)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 3456888888888888888888777777888888875443 3444444433 678888865
No 248
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=33.05 E-value=1.2e+02 Score=21.25 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCCCEEEEecc--------hHHHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeE
Q psy576 36 AQDETILLGIEPPVLVFVQS--------KERAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWI 99 (159)
Q Consensus 36 ~l~~~~~~~~~~~~lif~~~--------~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~v 99 (159)
.|.+.+.......+-+|... +...++..+.+++.|+.+.-+..+ ++.+++.+.++.+++..+.+
T Consensus 56 ~l~eki~l~~~~gV~v~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v 130 (251)
T 1qwg_A 56 VVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMV 130 (251)
T ss_dssp HHHHHHHHHHTTTCEEEECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCCeEECCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEE
Confidence 34444443344455566554 234445555556667766666554 57777777777776665555
No 249
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=32.73 E-value=54 Score=17.90 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHhcC----------CCCCEEEEecchHHHHHHHHHHHh
Q psy576 30 AGSPVQAQDETILLG----------IEPPVLVFVQSKERAQELYNELIY 68 (159)
Q Consensus 30 ~~~k~~~l~~~~~~~----------~~~~~lif~~~~~~~~~l~~~l~~ 68 (159)
.++--..+..++... .+.-++|.|.+.+.++++.+.+++
T Consensus 21 ~pG~A~~va~~iD~~~~~eI~GTIAGDDTIlvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 21 LPGNAHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp STTCHHHHHHHHHHHCCTTEEEEEECSSEEEEEESSHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHhCCCCCeEEEEeeCCEEEEEECCHHHHHHHHHHHHH
Confidence 345566666666532 345689999999999999998864
No 250
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=32.66 E-value=1.5e+02 Score=21.81 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=44.4
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecc-h-H---HHHHHHHHHHhCCCceEEEe---cCCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQS-K-E---RAQELYNELIYDGINVDVIH---SDRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~-~-~---~~~~l~~~l~~~~~~~~~~~---~~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
.+....+.+.+... +++++|.+.. . . ..+.+.+.|.+.++.+..+. +.-+.+.-.+..+.++..+.+++|+
T Consensus 26 ~g~~~~l~~~l~~~-g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 104 (371)
T 1o2d_A 26 EKILEKRGNIIDLL-GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVG 104 (371)
T ss_dssp TTHHHHHGGGGGGT-CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEE
T ss_pred cCHHHHHHHHHHHc-CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34455565666543 3567776654 2 2 46778888877777655444 2335666677777777777777776
Q ss_pred e
Q psy576 103 T 103 (159)
Q Consensus 103 t 103 (159)
-
T Consensus 105 v 105 (371)
T 1o2d_A 105 L 105 (371)
T ss_dssp E
T ss_pred e
Confidence 4
No 251
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=32.25 E-value=85 Score=18.93 Aligned_cols=109 Identities=15% Similarity=0.029 Sum_probs=57.6
Q ss_pred ecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEe
Q psy576 26 ETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 26 ~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t 103 (159)
.++++..-...+...+....+-.++..+.+..++ ...+......+.++.-.++.....+.++.++. ....|++.|
T Consensus 10 ivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a---~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls 86 (153)
T 3cz5_A 10 LVDDHPIVREGYRRLIERRPGYAVVAEAADAGEA---YRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFT 86 (153)
T ss_dssp EECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHH---HHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred EECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHH---HHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEE
Confidence 3444444455566666542222333256665543 34455556677777766655455556666554 345566665
Q ss_pred CCccc-----ccccCCCcEEEEecCCCCHHHHHHHHhhccCC
Q psy576 104 ELLGR-----GIDFRTVRLVVNYDFPSSAISYIHRIGRAGRG 140 (159)
Q Consensus 104 ~~~~~-----g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 140 (159)
..... .+.. .+.-. +.-|.+...+.+++.++.+.
T Consensus 87 ~~~~~~~~~~~~~~-g~~~~--l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 87 MHQGSAFALKAFEA-GASGY--VTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp SCCSHHHHHHHHHT-TCSEE--EETTSCTTHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHC-CCcEE--EecCCCHHHHHHHHHHHHhC
Confidence 43221 1121 22222 23467778888888777654
No 252
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=32.21 E-value=31 Score=25.54 Aligned_cols=36 Identities=8% Similarity=-0.137 Sum_probs=29.0
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRT 81 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 81 (159)
+.++++||.+-..+...+..|...|++ +..+.|++.
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 282 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWS 282 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHH
Confidence 678999999988888888888888884 777778753
No 253
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=31.90 E-value=1.5e+02 Score=23.12 Aligned_cols=71 Identities=8% Similarity=-0.033 Sum_probs=35.4
Q ss_pred eeeeecCCCCChHHHHHHHH----hcC-------CCCCEEEEecchHHHHHHH-HHHHhCCCceEEEecCCCHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQDETI----LLG-------IEPPVLVFVQSKERAQELY-NELIYDGINVDVIHSDRTQKQRDNVV 89 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~----~~~-------~~~~~lif~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~r~~~~ 89 (159)
......+...+|......++ ... ...++|+.+++..-+.... +.+...+..+..++++.
T Consensus 200 ~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~--------- 270 (590)
T 3h1t_A 200 RSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGK--------- 270 (590)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTTCSSEEECCC-----------
T ss_pred ceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccC---------
Confidence 34444555577776644433 333 5678999999998888877 65555555555555331
Q ss_pred HHHhcCCeeEEEEeC
Q psy576 90 RSFRTGRIWILITTE 104 (159)
Q Consensus 90 ~~f~~~~~~vlv~t~ 104 (159)
..+...|+|+|.
T Consensus 271 ---~~~~~~I~v~T~ 282 (590)
T 3h1t_A 271 ---VVKSREIYFAIY 282 (590)
T ss_dssp ---CCSSCSEEEEEG
T ss_pred ---CCCCCcEEEEEh
Confidence 234567888884
No 254
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=31.64 E-value=1.3e+02 Score=21.79 Aligned_cols=60 Identities=10% Similarity=0.025 Sum_probs=41.5
Q ss_pred CCCCEEE---EecchHHHHHHHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 45 IEPPVLV---FVQSKERAQELYNELIYDGI---NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 45 ~~~~~li---f~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
.++.+++ .+.|-.++....+.|++.|. .+...|+-++.. ..+.+.++.+.-+++|+....
T Consensus 215 ~gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~s~~----a~~~l~~~~i~~vv~t~tip~ 280 (319)
T 3dah_A 215 EGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGG----AADRIAASALDELVVTDTIPL 280 (319)
T ss_dssp CCSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEEECCCTT----HHHHHHTSSCSEEEEESSSCC
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEEeecCChH----HHHHHHhCCCCEEEEeccccC
Confidence 3445555 45677888888888887754 456778866654 355566677888888888754
No 255
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=31.63 E-value=84 Score=18.67 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=62.1
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc----CCeeEE
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT----GRIWIL 100 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vl 100 (159)
..++++..-...+...+........+..+.+..++ .+.+......+.++.-.++.....+.++.++. ....|+
T Consensus 9 Livdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a---~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii 85 (144)
T 3kht_A 9 LVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKA---LYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIV 85 (144)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHH---HHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEE
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHH---HHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEE
Confidence 34455445556677777654333234555555533 44455566778888777777777778888776 345677
Q ss_pred EEeCCcc-----cccccCCCcEEEEecCCC-CHHHHHHHHhhccC
Q psy576 101 ITTELLG-----RGIDFRTVRLVVNYDFPS-SAISYIHRIGRAGR 139 (159)
Q Consensus 101 v~t~~~~-----~g~~i~~~~~vi~~~~~~-~~~~~~q~~GR~~R 139 (159)
+.|.... ..+... ++-+ +.-|. +...+.+++.++.+
T Consensus 86 ~~s~~~~~~~~~~~~~~g-a~~~--l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 86 ILTDNVSDDRAKQCMAAG-ASSV--VDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp EEETTCCHHHHHHHHHTT-CSEE--EECCTTSHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHcC-CCEE--EECCCCcHHHHHHHHHHHHH
Confidence 6664322 122222 2222 23467 78887777765443
No 256
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=31.47 E-value=98 Score=19.88 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHh-CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 64 NELIY-DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 64 ~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
++|++ .|+++..+... +..-+..+.+.+.+|+++.+|.|..
T Consensus 50 ~~L~e~~Gl~v~~v~k~-~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 50 NLISRATGMNVNAMLSG-PMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HHHHHHHCCCCEEECCG-GGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHhCceeEEEEec-CCCCCchHHHHHHCCCccEEEEcCC
Confidence 34444 67777777543 2214567999999999999998864
No 257
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=31.41 E-value=1.7e+02 Score=22.24 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=40.3
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchH---HHHHHHHHHHhCCCce--EEEecCCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKE---RAQELYNELIYDGINV--DVIHSDRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~---~~~~l~~~l~~~~~~~--~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
.+....+.+.+.....++++|.+...- ..+.+.+.|.+.++.+ ..+.|..+.+.-.+..+.+++ ..+++|+
T Consensus 76 ~g~l~~l~~~l~~~g~~rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIA 151 (450)
T 1ta9_A 76 RHAFTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIG 151 (450)
T ss_dssp TTGGGGHHHHHTTTCSSEEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEE
T ss_pred cCHHHHHHHHHHhcCCCEEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEE
Confidence 345566667766533336777665321 3456667777667655 344554455455555555655 5566664
No 258
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=31.38 E-value=1.4e+02 Score=21.42 Aligned_cols=48 Identities=10% Similarity=0.242 Sum_probs=37.6
Q ss_pred CCEEEEecc--------------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 47 PPVLVFVQS--------------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 47 ~~~lif~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
+-+|||.+. ...++.+.+.|+..|+.+ .++..++..+-.+.++.|...
T Consensus 70 g~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 70 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV-IVYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp EEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEE-EEecCcCHHHHHHHHHHHHHh
Confidence 348888763 368889999999999986 455678888888889888653
No 259
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=31.01 E-value=85 Score=23.76 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=29.5
Q ss_pred CCChHHHHHHHH----hcCCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCC
Q psy576 30 AGSPVQAQDETI----LLGIEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDR 80 (159)
Q Consensus 30 ~~~k~~~l~~~~----~~~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~ 80 (159)
..+|......++ ......++||.|++ +-+....+.+.+. +.++..++|..
T Consensus 66 GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~~~~g~~ 121 (500)
T 1z63_A 66 GLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRFAVFHEDR 121 (500)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEEECSSST
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceEEEEecCc
Confidence 356665433332 33455789999995 4555555555443 45677777764
No 260
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=30.78 E-value=1.1e+02 Score=19.97 Aligned_cols=48 Identities=10% Similarity=0.252 Sum_probs=37.0
Q ss_pred CCEEEEec--------------chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 47 PPVLVFVQ--------------SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 47 ~~~lif~~--------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
+.+|||.+ +..+++.+.+.|...++.+ .++..++..+-.+.++.|...
T Consensus 45 G~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V-~v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 45 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV-IVYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred eEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 45888875 3467888999998889887 555678888888888888764
No 261
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=30.58 E-value=1.5e+02 Score=21.38 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=36.6
Q ss_pred CCCCEEEEecch-------HHHHHHHHHHHhCCCceEEEe------cC--CCHHHH-HHHHHHHhcCCeeEEEEeC
Q psy576 45 IEPPVLVFVQSK-------ERAQELYNELIYDGINVDVIH------SD--RTQKQR-DNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 45 ~~~~~lif~~~~-------~~~~~l~~~l~~~~~~~~~~~------~~--~~~~~r-~~~~~~f~~~~~~vlv~t~ 104 (159)
++..+-|.+++. +..+...+.|++.|+++.+-. +. -++++| .+..++|.+.+++.++|+.
T Consensus 11 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 11 QGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp TTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 344566666652 345566677887777654321 11 145555 4556678889999888874
No 262
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=30.36 E-value=93 Score=18.78 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=60.5
Q ss_pred eeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEE
Q psy576 24 YRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILI 101 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv 101 (159)
...++++..-...+...+... +-.+..+.+..++ ...+......+.++.-.++.....+.++.++. ....|++
T Consensus 17 ILivdd~~~~~~~l~~~L~~~--g~~v~~~~~~~~a---~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 91 (153)
T 3hv2_A 17 ILLVDSQEVILQRLQQLLSPL--PYTLHFARDATQA---LQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRIL 91 (153)
T ss_dssp EEEECSCHHHHHHHHHHHTTS--SCEEEEESSHHHH---HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEE
T ss_pred EEEECCCHHHHHHHHHHhccc--CcEEEEECCHHHH---HHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEE
Confidence 344555455556677777653 2334456665544 34455666778888777766666666666654 3566777
Q ss_pred EeCCccc-----ccccCCCcEEEEecCCCCHHHHHHHHhhcc
Q psy576 102 TTELLGR-----GIDFRTVRLVVNYDFPSSAISYIHRIGRAG 138 (159)
Q Consensus 102 ~t~~~~~-----g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~ 138 (159)
.|..... .+....+.-. +.-|.+...+.+++.++.
T Consensus 92 ~s~~~~~~~~~~~~~~g~~~~~--l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 92 LTGDPDLKLIAKAINEGEIYRY--LSKPWDDQELLLALRQAL 131 (153)
T ss_dssp ECCCCCHHHHHHHHHTTCCSEE--ECSSCCHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcceE--EeCCCCHHHHHHHHHHHH
Confidence 6654321 2222212222 335778888777775543
No 263
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=30.22 E-value=90 Score=18.58 Aligned_cols=117 Identities=9% Similarity=-0.042 Sum_probs=64.9
Q ss_pred eeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHh-CCCceEEEecCCCHHHHHHHHHHHhc--CCee
Q psy576 22 RMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIY-DGINVDVIHSDRTQKQRDNVVRSFRT--GRIW 98 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~ 98 (159)
.....++++..-...+..++.....-.+..+....+.+. ..... ....+.++.-.++.....+.++.++. ....
T Consensus 21 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~---~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 21 INILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIV---QRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHT---TCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCE
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHH---HHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCc
Confidence 344445554555666777776532234444433333222 22333 55678888888887777777777765 3566
Q ss_pred EEEEeCCccccc--ccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 99 ILITTELLGRGI--DFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 99 vlv~t~~~~~g~--~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
|++.|....... ..-..-..-.+.-|.+...+..++.++.+..
T Consensus 98 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 98 CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 777665432211 1111111222345788889888887776543
No 264
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=30.08 E-value=32 Score=16.73 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=7.7
Q ss_pred HHHHHHHHhhc
Q psy576 127 AISYIHRIGRA 137 (159)
Q Consensus 127 ~~~~~q~~GR~ 137 (159)
...|.+.+||-
T Consensus 27 LneYyai~GRP 37 (40)
T 1k8v_A 27 INEYFAIIGRP 37 (40)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHhcCc
Confidence 55677777875
No 265
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=29.68 E-value=1.3e+02 Score=20.37 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=40.5
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHH-HHHHHHHHhc--CCeeEEEEe
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQ-RDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~--~~~~vlv~t 103 (159)
+..+++...+.+..+.+.+.+...+..+..+..++...+ -...++...+ |.+++||..
T Consensus 36 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n 96 (256)
T 3gaf_A 36 GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNN 96 (256)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 456777888888888888888777777888888875443 3444444433 678888865
No 266
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=28.82 E-value=98 Score=18.59 Aligned_cols=112 Identities=9% Similarity=0.016 Sum_probs=59.2
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHH------HhCCCceEEEecCCCHHHHHHHHHHHhc----
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNEL------IYDGINVDVIHSDRTQKQRDNVVRSFRT---- 94 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l------~~~~~~~~~~~~~~~~~~r~~~~~~f~~---- 94 (159)
..++++......+...+........+..+.+..++....... ......+.++.-.++.....+.++.++.
T Consensus 8 Livddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~ 87 (152)
T 3heb_A 8 VMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHT 87 (152)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTT
T ss_pred EEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccc
Confidence 334554555666777777543322345555555443332210 1335567777766776666677777765
Q ss_pred CCeeEEEEeCCccc-----ccccCCCcEEEEecCCCCHHHHHHHHhhccC
Q psy576 95 GRIWILITTELLGR-----GIDFRTVRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 95 ~~~~vlv~t~~~~~-----g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
....|++.|..... .+... +... +.-|.+...+.+.+-++.+
T Consensus 88 ~~~pii~~t~~~~~~~~~~~~~~g-~~~~--l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 88 RRSPVVILTTTDDQREIQRCYDLG-ANVY--ITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHTT-CSEE--EECCSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHCC-CcEE--EeCCCCHHHHHHHHHHHHH
Confidence 34566666654322 22222 2222 2347777777776655543
No 267
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=28.23 E-value=1.4e+02 Score=20.00 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=41.1
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCH-HHHHHHHHHHhc--CCeeEEEEe
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQ-KQRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~r~~~~~~f~~--~~~~vlv~t 103 (159)
+.++++...+.+..+.+.+.+.+.+.++..+..++.. +.-...++.+.+ +.++++|..
T Consensus 29 G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 89 (247)
T 3lyl_A 29 GATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNN 89 (247)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4567788888888888888888777778888888754 334445555543 567787765
No 268
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=28.22 E-value=85 Score=19.64 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=25.3
Q ss_pred HHHHhCCCceEEEecCCCHHHH----HHHHHHHhcCCeeEEEEeCCc
Q psy576 64 NELIYDGINVDVIHSDRTQKQR----DNVVRSFRTGRIWILITTELL 106 (159)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~r----~~~~~~f~~~~~~vlv~t~~~ 106 (159)
++|++.++++..+.... ...+ ..+.+.+++|+++.+|.|..-
T Consensus 61 ~~L~~~Gi~v~~v~k~~-egg~~~~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 61 DWLNANNVPATPVAWPS-QEGQNPSLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp HHHHHTTCCCEEECCGG-GC-----CBCHHHHHHTTSCCEEEECCCC
T ss_pred HHHHHcCCeEEEEEecc-CCCcccccccHHHHHHCCCceEEEECCCC
Confidence 34556666666654311 1002 347888899998888887643
No 269
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=27.78 E-value=1.5e+02 Score=20.42 Aligned_cols=58 Identities=21% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHH-HHHHHHHHhc--CCeeEEEEe
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQ-RDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~--~~~~vlv~t 103 (159)
+..+++...+.+.++++.+.+...+..+..+..++...+ -...++...+ |.+++||..
T Consensus 48 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n 108 (279)
T 3sju_A 48 GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNS 108 (279)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 456777777878788888878776667777777775433 3334444332 677888764
No 270
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=27.25 E-value=1.5e+02 Score=20.14 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=39.7
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH-HHHHHHHHHhc--CCeeEEEEeC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK-QRDNVVRSFRT--GRIWILITTE 104 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--~~~~vlv~t~ 104 (159)
+..+++...+.+.++.+.+.+.+.+..+.++..+++.. .-...++.+.+ |.+++||..-
T Consensus 53 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~A 114 (262)
T 3rkr_A 53 GARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNA 114 (262)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 45677788888888888888877777777777777543 33444444433 6778887553
No 271
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=27.11 E-value=1.4e+02 Score=19.95 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=40.2
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH-HHHHHHHHHhc--CCeeEEEEeC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK-QRDNVVRSFRT--GRIWILITTE 104 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--~~~~vlv~t~ 104 (159)
+..+++...+.+..+.+.+.+...+..+..+..++... .-...++...+ +.++++|..-
T Consensus 33 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 33 GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA 94 (253)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45677888888888888888877777777788877543 33444444433 6788888653
No 272
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=27.03 E-value=1e+02 Score=18.17 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCCEEEEec------chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHH
Q psy576 36 AQDETILLGIEPPVLVFVQ------SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 36 ~l~~~~~~~~~~~~lif~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 90 (159)
.+.+++. .++++||.. +=..|..+.++|.+.+++...+.=..++..+..+.+
T Consensus 8 ~v~~~i~---~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 8 RLKKLTH---AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHHHHHT---SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHh---cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 3444444 468999985 336788999999988887666654445555444433
No 273
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=26.93 E-value=90 Score=17.55 Aligned_cols=105 Identities=8% Similarity=-0.016 Sum_probs=53.8
Q ss_pred cCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEeC
Q psy576 27 TEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILITTE 104 (159)
Q Consensus 27 ~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t~ 104 (159)
++.+..-...+...+... +- .+..+.+..++ .+.+......+.++.-.++.....+..+.+++ ....+++.|.
T Consensus 7 vdd~~~~~~~l~~~l~~~-~~-~v~~~~~~~~a---~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 7 VDDEPNIRELLKEELQEE-GY-EIDTAENGEEA---LKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp ECSCHHHHHHHHHHHHHT-TC-EEEEESSHHHH---HHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHC-CC-EEEEeCCHHHH---HHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEEC
Confidence 344334445566666642 22 34455554443 34445555667777666655445555666543 3456666654
Q ss_pred CcccccccC--CCcEEEEecCCCCHHHHHHHHhhcc
Q psy576 105 LLGRGIDFR--TVRLVVNYDFPSSAISYIHRIGRAG 138 (159)
Q Consensus 105 ~~~~g~~i~--~~~~vi~~~~~~~~~~~~q~~GR~~ 138 (159)
........- .+.-. +.-|.+...+.+++.++.
T Consensus 82 ~~~~~~~~~~~g~~~~--l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 82 YSHYRSDMSSWAADEY--VVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CGGGGGCGGGGGSSEE--EECCSSTHHHHHHHHHHT
T ss_pred CcchHHHHHhccccce--EECCCCHHHHHHHHHHHh
Confidence 332221111 11212 235777888887776653
No 274
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=26.74 E-value=1.8e+02 Score=21.06 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=35.8
Q ss_pred CCCEEEEecc-------hHHHHHHHHHHHhCCCceEEEe------cC--CCHHHH-HHHHHHHhcCCeeEEEEeC
Q psy576 46 EPPVLVFVQS-------KERAQELYNELIYDGINVDVIH------SD--RTQKQR-DNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 46 ~~~~lif~~~-------~~~~~~l~~~l~~~~~~~~~~~------~~--~~~~~r-~~~~~~f~~~~~~vlv~t~ 104 (159)
+..+-|++++ ....+...+.|++.|+.+.+-. +. -++++| .+..+.|.+.+++.++|+.
T Consensus 12 GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 12 GDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred cCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 3455556554 3455566677887777765431 11 245555 4455668888999888864
No 275
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=26.57 E-value=1e+02 Score=18.07 Aligned_cols=109 Identities=7% Similarity=-0.088 Sum_probs=64.4
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHh-CCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEE
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIY-DGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILI 101 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv 101 (159)
..++++..-...+...+... +- .+..+.+..+ ....+.. ....+.++.-.++.....+.++.++. ....|++
T Consensus 19 livdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~---al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ 93 (138)
T 2b4a_A 19 TLVEDEPSHATLIQYHLNQL-GA-EVTVHPSGSA---FFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLI 93 (138)
T ss_dssp EEECSCHHHHHHHHHHHHHT-TC-EEEEESSHHH---HHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHc-CC-EEEEeCCHHH---HHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 34455455566677777653 22 3445555443 3344555 55678888777766566677777765 2466777
Q ss_pred Ee-CCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCC
Q psy576 102 TT-ELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRG 140 (159)
Q Consensus 102 ~t-~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 140 (159)
.| ....... .... ..-.+.-|.+...+.+++.++.+.
T Consensus 94 ls~~~~~~~~-~~~~-~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 94 LTTGRHELIE-SSEH-NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EESCC--CCC-CSSS-CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred EECCCCCHHH-HHHH-HHheeeCCCCHHHHHHHHHHHHHh
Confidence 66 5444333 3333 222335688899999999887654
No 276
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=26.56 E-value=1.6e+02 Score=20.26 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=38.2
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH-HHHHHHHHHhc--CCeeEEEEe
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK-QRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--~~~~vlv~t 103 (159)
+..+++...+.+.++++.+.+...+..+..+..++... .-.+.++.... |.+++||..
T Consensus 50 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~n 110 (271)
T 4ibo_A 50 GARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNN 110 (271)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence 45677777777778888887877766777777776543 33444444433 677888865
No 277
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=26.33 E-value=1.6e+02 Score=20.23 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=40.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH-HHHHHHHHHhc--CCeeEEEEe
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK-QRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--~~~~vlv~t 103 (159)
.+..+++...+.+.++++.+.+...+..+..+..++... .-...++...+ |.+++||..
T Consensus 27 ~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnn 88 (264)
T 3tfo_A 27 AGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNN 88 (264)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 345677788888888888888877777777787777543 33444444433 678888865
No 278
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=26.14 E-value=37 Score=21.45 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=23.7
Q ss_pred CCCE--EEEec-chHHHHHHHHHHHh----------CCC-ceEEEecCCC
Q psy576 46 EPPV--LVFVQ-SKERAQELYNELIY----------DGI-NVDVIHSDRT 81 (159)
Q Consensus 46 ~~~~--lif~~-~~~~~~~l~~~l~~----------~~~-~~~~~~~~~~ 81 (159)
+.++ +++|. +-..+...+..|.+ .|+ ++..+.|++.
T Consensus 87 ~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 87 GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 3455 35688 66667777777764 265 6788888753
No 279
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=25.85 E-value=1e+02 Score=17.84 Aligned_cols=106 Identities=8% Similarity=-0.080 Sum_probs=60.1
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC----CeeEE
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG----RIWIL 100 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~----~~~vl 100 (159)
..++++......+..++. . +--+..+.+...+ .+.+.+....+.++.-.++.....+.++.+++. ...|+
T Consensus 8 livdd~~~~~~~l~~~l~--~-~~~v~~~~~~~~a---~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii 81 (133)
T 3nhm_A 8 LIVENSWTMRETLRLLLS--G-EFDCTTAADGASG---LQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVI 81 (133)
T ss_dssp EEECSCHHHHHHHHHHHT--T-TSEEEEESSHHHH---HHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred EEEcCCHHHHHHHHHHHh--C-CcEEEEECCHHHH---HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEE
Confidence 334444445555666665 2 2334455555443 444556667788887777776677777777653 56677
Q ss_pred EEeCCcccccccC----CCcEEEEecCCCCHHHHHHHHhhccC
Q psy576 101 ITTELLGRGIDFR----TVRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 101 v~t~~~~~g~~i~----~~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
+.|....... .. .++- .+.-|.+...+.+++.++.+
T Consensus 82 ~~s~~~~~~~-~~~~~~g~~~--~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 82 FVSGYAPRTE-GPADQPVPDA--YLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp EEESCCC------TTSCCCSE--EEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCCcHhH-HHHhhcCCce--EEeccCCHHHHHHHHHHHHh
Confidence 7665432222 11 1222 23358888888888876654
No 280
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=25.56 E-value=1.7e+02 Score=20.26 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=36.0
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH-HHHHHHHHHhc--CCeeEEEEe
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK-QRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--~~~~vlv~t 103 (159)
+..+++...+.+.++++.+.+...+..+..+..++... +-...++...+ |.+++||..
T Consensus 52 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnn 112 (283)
T 3v8b_A 52 GVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVAN 112 (283)
T ss_dssp TCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 44666777777777777777766566677777776543 33344444333 677777754
No 281
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=25.33 E-value=1.8e+02 Score=20.58 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
+.++......+-+++|++. +.+..+.+.+.+.+.+ +..++.+++.++..++.+.-++.... ++..++
T Consensus 62 l~el~~~~~~Dv~ii~vp~-~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPNc 129 (294)
T 2yv1_A 62 VKEAVKETDANASVIFVPA-PFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK-IIGPNT 129 (294)
T ss_dssp HHHHHHHHCCCEEEECCCH-HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSSC
T ss_pred HHHHhhcCCCCEEEEccCH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCCC
Confidence 4444442222334455555 4555555556667887 56678899887777777766654443 444443
No 282
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=24.87 E-value=73 Score=17.95 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=32.2
Q ss_pred eecCCCCChHHHHHHHHhcC----------CCCCEEEEecchHHHHHHHHHHHh
Q psy576 25 RETEGAGSPVQAQDETILLG----------IEPPVLVFVQSKERAQELYNELIY 68 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~----------~~~~~lif~~~~~~~~~l~~~l~~ 68 (159)
..+...++-...+..++... .+.-++|.|.+.+.++++.+.+.+
T Consensus 28 vVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~~l~~ 81 (83)
T 2p5m_A 28 IVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLLE 81 (83)
T ss_dssp EEEEESTTCHHHHHHHHHTTTCTTCCEEEECSSEEEEECSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHHHHHH
Confidence 33344466777788888743 235689999999999999998864
No 283
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.76 E-value=1.1e+02 Score=17.89 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=29.7
Q ss_pred CEEEEecch-------HHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 48 PVLVFVQSK-------ERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 48 ~~lif~~~~-------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
+++||..+. +.++.+.++|...+++...+.=..++..+.++.+.+
T Consensus 9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 9 VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred EEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 566665432 233478888988888877777666666666655554
No 284
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=24.50 E-value=56 Score=20.26 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=22.8
Q ss_pred CCCCEEEEecchHHH-------HH---HHHHHHhCCCceEEEecCCC
Q psy576 45 IEPPVLVFVQSKERA-------QE---LYNELIYDGINVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~-------~~---l~~~l~~~~~~~~~~~~~~~ 81 (159)
...++++||.+-... .. +.+.+...|+++..+.|++.
T Consensus 91 ~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~ 137 (154)
T 1hzm_A 91 GTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFS 137 (154)
T ss_dssp TSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHH
T ss_pred CCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHH
Confidence 456799999865322 22 33334345777778888853
No 285
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=24.45 E-value=1.8e+02 Score=20.13 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=37.5
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH-HHHHHHHHHhc--CCeeEEEEe
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK-QRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--~~~~vlv~t 103 (159)
+..+++...+.+.++++.+.+...+..+..+..+++.. .-...++.... |.+++||..
T Consensus 32 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnn 92 (280)
T 3tox_A 32 GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNN 92 (280)
T ss_dssp TCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 44577777777777788777766666677777776543 33444444433 678888865
No 286
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=24.37 E-value=2e+02 Score=20.70 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=34.4
Q ss_pred CEEEEecch----HHHHHHHHHHHhCCCceEEE---------ecCCCHHHH-HHHHHHHhcCCeeEEEEeC
Q psy576 48 PVLVFVQSK----ERAQELYNELIYDGINVDVI---------HSDRTQKQR-DNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 48 ~~lif~~~~----~~~~~l~~~l~~~~~~~~~~---------~~~~~~~~r-~~~~~~f~~~~~~vlv~t~ 104 (159)
.+-|++++. +..+...+.|++.|+.+..- .++ ++++| .+..+.|.+.+++.++|+.
T Consensus 19 ~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp~i~aI~~~r 88 (311)
T 1zl0_A 19 RVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAG-TVEQRLEDLHNAFDMPDITAVWCLR 88 (311)
T ss_dssp EEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHSTTEEEEEESC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCC-CHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 444555432 44566667777777776542 223 44555 4556678888999888874
No 287
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=24.32 E-value=1.5e+02 Score=19.19 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCCEEEEecc--------------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 46 EPPVLVFVQS--------------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 46 ~~~~lif~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.+-+|||++. ...++.+.+.|...++.+ .++..++.++-.+.++.|.+
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 4557887764 348889999999999886 56677888899999998866
No 288
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=24.21 E-value=1.3e+02 Score=18.48 Aligned_cols=111 Identities=12% Similarity=0.066 Sum_probs=60.2
Q ss_pred eeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc-CCeeEEEE
Q psy576 24 YRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT-GRIWILIT 102 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~ 102 (159)
...++++..-...+..++.......++..+.+...+.. .+......+.++.-.++.....++++.++. ....+++.
T Consensus 28 ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~---~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~ 104 (164)
T 3t8y_A 28 VLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVE---KAIELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMV 104 (164)
T ss_dssp EEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHH---HHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHH---HhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEE
Confidence 44455545566667777775333233336666654443 344445677888777766666666666654 23556665
Q ss_pred eCCccc-------ccccCCCcEEEEecCCCC---------HHHHHHHHhhccCC
Q psy576 103 TELLGR-------GIDFRTVRLVVNYDFPSS---------AISYIHRIGRAGRG 140 (159)
Q Consensus 103 t~~~~~-------g~~i~~~~~vi~~~~~~~---------~~~~~q~~GR~~R~ 140 (159)
|..... .+......++ .-|.+ .....+++.++...
T Consensus 105 s~~~~~~~~~~~~~~~~ga~~~l---~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 105 SSLTEEGAAITIEALRNGAVDFI---TKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp ESSCCTTCHHHHHHHHTTCCEEE---ECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred ecCCccchHHHHHHHHcCcCEEE---eCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 543322 2222222222 23444 56777777766554
No 289
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=24.12 E-value=1.8e+02 Score=19.99 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=39.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH-HHHHHHHHHhc--CCeeEEEEe
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK-QRDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~r~~~~~~f~~--~~~~vlv~t 103 (159)
.+..+++...+.+.++++...+.+.+..+..+..++... .-...++...+ |.+++||..
T Consensus 51 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn 112 (270)
T 3ftp_A 51 RGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNN 112 (270)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 345677788888888888887776666667777776543 33444444433 678888865
No 290
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=24.06 E-value=1.8e+02 Score=20.04 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=41.7
Q ss_pred CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 47 PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
..++|=+.+.+.+....+++.+.+.++..-+.++++++. +.++.+.+. ..++++.+. +.|+
T Consensus 54 ~DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~-~~l~~~a~~-~~vv~apNf-SlGv 114 (228)
T 1vm6_A 54 PDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHL-QMLRELSKE-VPVVQAYNF-SIGI 114 (228)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHHHH-HHHHHHTTT-SEEEECSCC-CHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHH-HHHHHHHhh-CCEEEeccc-cHHH
Confidence 458885567777777777777888888887878888655 445555444 778877654 3344
No 291
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=23.97 E-value=1.2e+02 Score=17.85 Aligned_cols=106 Identities=7% Similarity=-0.002 Sum_probs=55.6
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc----CCeeEE
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT----GRIWIL 100 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vl 100 (159)
..++++..-...+..++... -.+..+.+..++. +.+......+.++.-.++.....+.++.++. ....|+
T Consensus 7 Livdd~~~~~~~l~~~l~~~---~~v~~~~~~~~a~---~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (140)
T 3n53_A 7 LIIDQQDFSRIELKNFLDSE---YLVIESKNEKEAL---EQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
T ss_dssp EEECSCHHHHHHHHHHHTTT---SEEEEESSHHHHH---HHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEE
T ss_pred EEEeCCHHHHHHHHHHHHhc---ceEEEeCCHHHHH---HHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEE
Confidence 33444444556667777653 3344555555443 3444455678888877877777777777765 345677
Q ss_pred EEeCCcccc-----cccCCCcEEEEecCCCCHHHHHHHHhhccC
Q psy576 101 ITTELLGRG-----IDFRTVRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 101 v~t~~~~~g-----~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
+.|...... +... +.-. +.-|.+...+.+++.++.+
T Consensus 81 ~~s~~~~~~~~~~~~~~g-~~~~--l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 81 LLFSSEHKEAIVNGLHSG-ADDY--LTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp EEECC----CTTTTTTCC-CSEE--EESSCCHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcC-CCee--eeCCCCHHHHHHHHHHHHh
Confidence 666543222 2221 2222 3357788888888766544
No 292
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.15 E-value=1.3e+02 Score=18.19 Aligned_cols=111 Identities=7% Similarity=-0.015 Sum_probs=57.2
Q ss_pred eeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEE
Q psy576 23 MYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWIL 100 (159)
Q Consensus 23 ~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vl 100 (159)
....++++..-...+..++... +-.++..+.+..++........ ....+.++.-.++.....+.++.++. ....|+
T Consensus 38 ~Ilivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~~al~~l~~~~-~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii 115 (157)
T 3hzh_A 38 NVLIVDDSVFTVKQLTQIFTSE-GFNIIDTAADGEEAVIKYKNHY-PNIDIVTLXITMPKMDGITCLSNIMEFDKNARVI 115 (157)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHG-GGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHhcC-CCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEE
Confidence 3444555455556677777653 3334325666554444333210 04557777666665555666666554 345566
Q ss_pred EEeCCccc-----ccccCCCcEEEEecCCCCHHHHHHHHhhcc
Q psy576 101 ITTELLGR-----GIDFRTVRLVVNYDFPSSAISYIHRIGRAG 138 (159)
Q Consensus 101 v~t~~~~~-----g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~ 138 (159)
+.|..... .+.. .++.+ +.-|.+...+.+++.++.
T Consensus 116 ~ls~~~~~~~~~~~~~~-g~~~~--l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 116 MISALGKEQLVKDCLIK-GAKTF--IVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp EEESCCCHHHHHHHHHT-TCSEE--EESSCCHHHHHHHHHHTT
T ss_pred EEeccCcHHHHHHHHHc-CCCEE--EeCCCCHHHHHHHHHHHh
Confidence 66543221 1122 12222 234677788777776654
No 293
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=22.91 E-value=62 Score=21.64 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=23.3
Q ss_pred CCCE--EEEec-chHHHHHHHHHHHh----------CCC-ceEEEecCC
Q psy576 46 EPPV--LVFVQ-SKERAQELYNELIY----------DGI-NVDVIHSDR 80 (159)
Q Consensus 46 ~~~~--lif~~-~~~~~~~l~~~l~~----------~~~-~~~~~~~~~ 80 (159)
+.++ ++||. +-..+...+..|.+ .|+ ++..+.||+
T Consensus 109 d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 157 (211)
T 1qb0_A 109 DKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 157 (211)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHH
Confidence 4555 56798 66666667777664 466 577888874
No 294
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=22.84 E-value=2.3e+02 Score=20.87 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=42.0
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecch-H---HHHHHHHHHHhCCCceEEEec---CCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSK-E---RAQELYNELIYDGINVDVIHS---DRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~-~---~~~~l~~~l~~~~~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
.+....+.+.+.....++++|.+... . ..+.+.+.|.+.++.+..+.+ .-+.+.-.+..+.++....+++|+-
T Consensus 16 ~g~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 95 (383)
T 3ox4_A 16 EGSLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISL 95 (383)
T ss_dssp TTHHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEe
Confidence 45566666666654435666665532 1 245566667766766554432 3455566666777766666666663
No 295
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=22.61 E-value=2e+02 Score=21.34 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=41.0
Q ss_pred CCCEEE---EecchHHHHHHHHHHHhCCCc---eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccc
Q psy576 46 EPPVLV---FVQSKERAQELYNELIYDGIN---VDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRG 109 (159)
Q Consensus 46 ~~~~li---f~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g 109 (159)
++.+|| .+.|-.++.+..+.|++.|.. +...|+=++... .+.+.++.++-+|+|+.....
T Consensus 272 Gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~s~~a----~~~l~~s~id~vvvTntip~~ 337 (379)
T 2ji4_A 272 GRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDA----PRRIEESAIDEVVVTNTIPHE 337 (379)
T ss_dssp TSEEEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEEEECCCTTH----HHHHHHSSCCEEEEESSSCCH
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHhcCCCEEEEEEEeecCCcHH----HHHHHhCCCCEEEEecCCCCc
Confidence 344555 456778888888999887643 456677666543 455566678889999887543
No 296
>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1
Probab=22.48 E-value=1.5e+02 Score=18.48 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=36.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC----CHHHHHHHHHHHhcCCee
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR----TQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~~~r~~~~~~f~~~~~~ 98 (159)
...|++|+-.+.+...++.+...+.++.+..+...+ +.++....+.....+++.
T Consensus 54 ~~~p~~VL~a~~~~L~~l~~~a~~~~l~~~~f~d~~~~~~~~~~~~~~~~~~~~~~l~ 111 (135)
T 2gax_A 54 SIQPIVVMATDQEALRKIHQRSLERDITTSLYIEEMFATGHDAANRQVFSHFSPDTAK 111 (135)
T ss_dssp BSSCEEEEEECHHHHHHHHHHHHHTTCCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCC
T ss_pred CCCcEEEEEECHHHHHHHHHHHHHCCCcEEeccHHhhhCCCHHHHHHHHhcCCcccce
Confidence 345888887777999999888888887776665432 455555555555556554
No 297
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=22.32 E-value=2e+02 Score=20.03 Aligned_cols=58 Identities=9% Similarity=0.077 Sum_probs=38.3
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHH-HHHHHHHHhc--CCeeEEEEe
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQ-RDNVVRSFRT--GRIWILITT 103 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~--~~~~vlv~t 103 (159)
+..+++...+.+.++++.+.+...+..+.++..+++..+ -.+.++...+ |.+++||..
T Consensus 55 G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lvnn 115 (301)
T 3tjr_A 55 GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSN 115 (301)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 456777778888888888888777667777777765433 3334444332 677787765
No 298
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=22.10 E-value=1.3e+02 Score=19.83 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=28.1
Q ss_pred HHHHh-CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 64 NELIY-DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 64 ~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
++|++ .|+++..+... +..-+..+.+.+.+|+++.+|.|..
T Consensus 66 ~~L~e~~Gl~v~~v~k~-~eGG~pqI~d~I~~geIdlVInt~d 107 (178)
T 1vmd_A 66 ALLQEKLGLKVHRLKSG-PLGGDQQIGAMIAEGKIDVLIFFWD 107 (178)
T ss_dssp HHHHHHHCCCCEECSCG-GGTHHHHHHHHHHTTSCCEEEEECC
T ss_pred HHHHHHhCceeEEEeec-CCCCCchHHHHHHCCCccEEEEccC
Confidence 34444 57777766532 2214567999999999999998864
No 299
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=22.05 E-value=1.5e+02 Score=18.26 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEE
Q psy576 36 AQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVI 76 (159)
Q Consensus 36 ~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~ 76 (159)
.+..+... ...++++-+++.++..++.+..++.+++...+
T Consensus 39 ~l~~W~~~-G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I 78 (123)
T 1rzw_A 39 LRRKWLDE-GQKKVVLKVKSLEELLGIKHKAESLGLVTGLV 78 (123)
T ss_dssp HHHHTGGG-CSSEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHC-CCcEEEEecCCHHHHHHHHHHHHHCCCCEEEE
Confidence 34444332 45677788999999999999888888776555
No 300
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=21.98 E-value=1.8e+02 Score=19.14 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=36.2
Q ss_pred CCEEEEecchHH---HHHHHHHHHhCCCc--eEEEecCCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 47 PPVLVFVQSKER---AQELYNELIYDGIN--VDVIHSDRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 47 ~~~lif~~~~~~---~~~l~~~l~~~~~~--~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
..+.|++.+.++ +++....|++.+++ +.+...--.++...+..+.......+|+|+-
T Consensus 12 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~ 73 (170)
T 1xmp_A 12 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 73 (170)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 458888888765 55667778777654 3333333356666666666666556677764
No 301
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=21.92 E-value=1.5e+02 Score=18.30 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCCCEEEEec------chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 34 VQAQDETILLGIEPPVLVFVQ------SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 34 ~~~l~~~~~~~~~~~~lif~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
.+.+.+++.. .+++||+. .=..|..+.++|.+.+++...+.=..++..+..+.+..
T Consensus 25 ~~~v~~~i~~---~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~ 86 (135)
T 2wci_A 25 IEKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 86 (135)
T ss_dssp HHHHHHHHHH---CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhcc---CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHH
Confidence 3445555543 47889987 34678999999998888776666555555555544433
No 302
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=21.86 E-value=19 Score=27.50 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 81 (159)
++.+++++|.+-..+...+..|...|+ ++..+.|++.
T Consensus 424 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 461 (466)
T 3r2u_A 424 KNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYK 461 (466)
T ss_dssp --------------------------------------
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHH
Confidence 345789999998888888888887777 5667777764
No 303
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=21.79 E-value=1.9e+02 Score=19.51 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=40.5
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHH-HHHHHHHHhc-CCeeEEEEe
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQ-RDNVVRSFRT-GRIWILITT 103 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-r~~~~~~f~~-~~~~vlv~t 103 (159)
+.++++...+.+.++++.+.+.+.+..+.++..+++..+ -....+.+.+ |.+++||..
T Consensus 31 G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~n 90 (252)
T 3h7a_A 31 GFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFN 90 (252)
T ss_dssp TCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEEC
Confidence 456777888888888888888777777888888875443 3444444322 788888865
No 304
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=21.72 E-value=2.4e+02 Score=20.68 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=37.3
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecch--H----HHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSK--E----RAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~--~----~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+....+.+.+.....++++|.+... + ..+.+.+.|.+.++.+..+.+. -+.+.-.+..+.+++...+++|+
T Consensus 19 g~~~~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 98 (387)
T 3bfj_A 19 NAISVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVT 98 (387)
T ss_dssp TGGGGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3444455555543234566655432 1 3566666676666655444322 23445555666666666666665
No 305
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.54 E-value=1.3e+02 Score=17.57 Aligned_cols=110 Identities=10% Similarity=-0.077 Sum_probs=60.8
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc----CCeeEE
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT----GRIWIL 100 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vl 100 (159)
..++++..-...+...+... +- -+..+.+.. +..+.+......+.++.-.++.....+.++.++. ....|+
T Consensus 11 Livdd~~~~~~~l~~~L~~~-g~-~v~~~~~~~---~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii 85 (142)
T 3cg4_A 11 MIVDDDAHVRIAVKTILSDA-GF-HIISADSGG---QCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIV 85 (142)
T ss_dssp EEECSCHHHHHHHHHHHHHT-TC-EEEEESSHH---HHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHC-Ce-EEEEeCCHH---HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEE
Confidence 33444445556677777653 22 344555544 3444555566777788777665555666776654 346677
Q ss_pred EEeCCcccccccCC--CcEEEEecCCCCHHHHHHHHhhccC
Q psy576 101 ITTELLGRGIDFRT--VRLVVNYDFPSSAISYIHRIGRAGR 139 (159)
Q Consensus 101 v~t~~~~~g~~i~~--~~~vi~~~~~~~~~~~~q~~GR~~R 139 (159)
+.|.......-... .-..-.+.-|.+...+.+++.++.+
T Consensus 86 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 86 MLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 76654322221111 1122233457788888877765543
No 306
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.40 E-value=1.3e+02 Score=17.35 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=61.8
Q ss_pred eecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC----CeeEE
Q psy576 25 RETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG----RIWIL 100 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~----~~~vl 100 (159)
..++++..-...+..++.. .+. -+..+.+..++ ...+......+.++.-.++.....+.++.++.. ...|+
T Consensus 10 livdd~~~~~~~l~~~L~~-~g~-~v~~~~~~~~a---~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii 84 (132)
T 3lte_A 10 LVVDDDQAMAAAIERVLKR-DHW-QVEIAHNGFDA---GIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKIL 84 (132)
T ss_dssp EEECSCHHHHHHHHHHHHH-TTC-EEEEESSHHHH---HHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEE
T ss_pred EEEECCHHHHHHHHHHHHH-CCc-EEEEeCCHHHH---HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEE
Confidence 3445544555667777765 222 33455554433 344555667778887777766667777777652 34566
Q ss_pred EEeCCccc----ccccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 101 ITTELLGR----GIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 101 v~t~~~~~----g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
+.|..... .+.. .++ -.+.-|.+...+.+++.++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~-g~~--~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 85 VVSGLDKAKLQQAVTE-GAD--DYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EECCSCSHHHHHHHHH-TCC--EEECSSCCHHHHHHHHHHHHC--
T ss_pred EEeCCChHHHHHHHHh-ChH--HHhhCCCCHHHHHHHHHHHcCCC
Confidence 66553222 1111 112 13446888999999888776544
No 307
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=21.21 E-value=2.4e+02 Score=20.43 Aligned_cols=67 Identities=10% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHhcCCCCCEEEEec-----chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccc
Q psy576 40 TILLGIEPPVLVFVQ-----SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRG 109 (159)
Q Consensus 40 ~~~~~~~~~~lif~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g 109 (159)
++......+++|+.. |..-++.+++.+.+.+..+..+.-. ......+.+.+.+.+. |+++|++...|
T Consensus 246 ~~~~~~~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~d~-ii~gsp~~~~~ 317 (402)
T 1e5d_A 246 YAEQKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK--ACHHSQIMSEISDAGA-VIVGSPTHNNG 317 (402)
T ss_dssp HHHCCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT--TSCHHHHHHHHHTCSE-EEEECCCBTTB
T ss_pred HhcCCCCCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECC--CCCHHHHHHHHHHCCE-EEEECCccCCC
Confidence 333333455555443 2344555666666556555444432 2222334444444443 55666654443
No 308
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=21.21 E-value=2.1e+02 Score=19.73 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=37.1
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCC--CceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDG--INVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
+.++.+.|++.+...++-..+.|.+.+ -++.++ ...+++.++.+.+..+-
T Consensus 24 grd~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~~ 75 (227)
T 3gr1_A 24 GRDKMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTYY 75 (227)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHHC
T ss_pred CCCCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhcC
Confidence 456789999999999999999886664 456555 35667777777776644
No 309
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=21.05 E-value=54 Score=27.72 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=39.7
Q ss_pred CCCChHHHHH----HHHhcCCCCCEEEEecchHHHHHHHHHH-HhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEE
Q psy576 29 GAGSPVQAQD----ETILLGIEPPVLVFVQSKERAQELYNEL-IYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILI 101 (159)
Q Consensus 29 ~~~~k~~~l~----~~~~~~~~~~~lif~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv 101 (159)
..-+|..... .++.....+++||.|++ .-+..-...+ +..+.++..+++..... ......+ ...+|+|
T Consensus 179 tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~~~~~~~----~~~~~~~~~~~~dIvI 253 (968)
T 3dmq_A 179 VGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFDDERYAE----AQHDAYNPFDTEQLVI 253 (968)
T ss_dssp TTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECCHHHHHH----HHHTTCSSSTTCSEEE
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEccchhhh----hhhhcccccccCCEEE
Confidence 3356665433 33344556689999999 6665555555 44477777777642111 1111111 3467888
Q ss_pred EeC
Q psy576 102 TTE 104 (159)
Q Consensus 102 ~t~ 104 (159)
+|.
T Consensus 254 ~T~ 256 (968)
T 3dmq_A 254 CSL 256 (968)
T ss_dssp ECH
T ss_pred EcH
Confidence 883
No 310
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=20.89 E-value=2.4e+02 Score=20.35 Aligned_cols=49 Identities=8% Similarity=-0.059 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 55 SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 55 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
+.+.++++ +.+++.+....+-=|+-+.-+-.+.+. +..+-.-|.|-|..
T Consensus 74 ~~~~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~~~~p~i~IPTT~ 122 (354)
T 3ce9_A 74 DFDEIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FLRKLPFISVPTST 122 (354)
T ss_dssp BHHHHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HHHTCCEEEEESCC
T ss_pred CHHHHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hhcCCCEEEecCcc
Confidence 33344444 433333333333333333333333333 22333344444443
No 311
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=20.75 E-value=61 Score=18.10 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=32.3
Q ss_pred eeeecCCCCChHHHHHHHHhcC----------CCCCEEEEecchHHHHHHHHHHHh
Q psy576 23 MYRETEGAGSPVQAQDETILLG----------IEPPVLVFVQSKERAQELYNELIY 68 (159)
Q Consensus 23 ~~~~~~~~~~k~~~l~~~~~~~----------~~~~~lif~~~~~~~~~l~~~l~~ 68 (159)
.+..+...++-...+..++... .+.-++|.|.+.+.++++.+.+.+
T Consensus 22 n~vVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTIlvi~r~~~~a~~l~~~l~~ 77 (79)
T 2zfz_A 22 NLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFEN 77 (79)
T ss_dssp TEEEEECSTTCHHHHHHHHHHHCCTTEEEEEECSSEEEEEECTTCCHHHHHHHHHH
T ss_pred CEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEEEEEECCHHHHHHHHHHHHh
Confidence 3334444466677777777632 345689999999999999998864
No 312
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=20.56 E-value=1.5e+02 Score=17.64 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=34.8
Q ss_pred CCEEEEecch---HH--HHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc-ccCC
Q psy576 47 PPVLVFVQSK---ER--AQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI-DFRT 114 (159)
Q Consensus 47 ~~~lif~~~~---~~--~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~-~i~~ 114 (159)
.++++.|.+- +. +..+.+.+.+.++.+.+-+-....-+. . ..+.+++++|.-+...+ ++|-
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~------~-~~~~DlIist~~l~~~~~~ipv 88 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET------Y-MDGVHLICTTARVDRSFGDIPL 88 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT------S-TTSCSEEEESSCCCCCSTTCCE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh------c-cCCCCEEEECCccccccCCCCE
Confidence 4688888842 33 466777777777765444433322111 1 13567888887766444 5553
No 313
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=20.43 E-value=2.3e+02 Score=19.96 Aligned_cols=68 Identities=15% Similarity=0.054 Sum_probs=40.0
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCc
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRTQKQRDNVVRSFRTGRIWILITTELL 106 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 106 (159)
+.++.... .-.++|.+-..+.+..+.+.+-+.+.+ +..++.+++.++..++.+.-++.... ++..++.
T Consensus 56 l~el~~~~-~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~-vigPNc~ 124 (288)
T 1oi7_A 56 VKEAVAHH-EVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR-LIGGNCP 124 (288)
T ss_dssp HHHHHHHS-CCSEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EEESSSC
T ss_pred HHHHhhcC-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEeCCCC
Confidence 44554432 234444444445566666666677887 66778889887766776666554443 4444443
No 314
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=20.31 E-value=3.8e+02 Score=22.42 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=36.6
Q ss_pred ecCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHH----HhCCCceEEEec
Q psy576 26 ETEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNEL----IYDGINVDVIHS 78 (159)
Q Consensus 26 ~~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l----~~~~~~~~~~~~ 78 (159)
.+...++|... +...+....+..+.|.+++..-|..-++++ ...|+.++.+.+
T Consensus 94 EM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 94 EMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp ECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred hccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 34444666655 445556667788999999988777665554 445888988887
No 315
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=20.26 E-value=2.4e+02 Score=20.02 Aligned_cols=67 Identities=21% Similarity=0.135 Sum_probs=38.7
Q ss_pred HHHHHhcCC-CCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 37 QDETILLGI-EPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 37 l~~~~~~~~-~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
+.++..... .+-+++|++... +..+.+.+.+.+.+ +..++.+++.++..++.+.-++.... ++..++
T Consensus 62 l~el~~~~~~~DvaIi~vp~~~-~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPNc 130 (297)
T 2yv2_A 62 VKEALAEHPEINTSIVFVPAPF-APDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGPNC 130 (297)
T ss_dssp HHHHHHHCTTCCEEEECCCGGG-HHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSSS
T ss_pred HHHHhhcCCCCCEEEEecCHHH-HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCCC
Confidence 445444322 333555666654 44555555567787 66678889887777777766554443 344443
No 316
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A*
Probab=20.18 E-value=2.3e+02 Score=19.88 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=42.1
Q ss_pred CCEEEEecchHHHHHHHHHHHhC-----------------CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEe-CCccc
Q psy576 47 PPVLVFVQSKERAQELYNELIYD-----------------GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITT-ELLGR 108 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~-----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t-~~~~~ 108 (159)
.+.++.+.....++.++++|... +.++.++.+++-...-.-..+.+..-..+.+|.+ .+.+.
T Consensus 17 a~~vll~GdP~R~~~ia~~l~~~~~~~~~r~~~~~tG~~~G~~V~v~~~GiG~psaai~~~eL~~~gv~~iI~~GtaGgL 96 (275)
T 3phc_A 17 TPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSL 96 (275)
T ss_dssp CSEEEEESCHHHHHHHHTTSSEEEEEEEETTEEEEEEEETTEEEEEEECCSSHHHHHHHHHHHHTTTCCEEEEEEEEEES
T ss_pred CCEEEECCCHHHHHHHHHHhccCeeeeeeCCeEEEEEEECCEEEEEEECCCChHHHHHHHHHHHHCCCCEEEEeeeecCc
Confidence 46778888888888888776421 3346666666755544444444444344455544 44444
Q ss_pred ccc-cCCCcEEE
Q psy576 109 GID-FRTVRLVV 119 (159)
Q Consensus 109 g~~-i~~~~~vi 119 (159)
.-+ ++--++|+
T Consensus 97 ~~~~i~~GDiVI 108 (275)
T 3phc_A 97 QPDLIKRGDICI 108 (275)
T ss_dssp CTTTCCTTCEEE
T ss_pred ccccCCCCcEEE
Confidence 434 55556555
Done!