RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy576
(159 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 103 bits (259), Expect = 2e-28
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 14/119 (11%)
Query: 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQR----------DNVVRSFRTGRIW 98
L+F SK++ EL +L+ GIN + + + + TG
Sbjct: 39 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFD 98
Query: 99 ILITTELLGRG---IDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154
+I + P A+S R GR GR G+ G +
Sbjct: 99 SVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGER 156
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 90.0 bits (222), Expect = 5e-23
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQR--------DNVVRSFRTGRIWIL 100
++VF +E A+++ NEL+ DGI +++ ++ F G +L
Sbjct: 164 IIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 223
Query: 101 ITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154
+ T + G+D V LVV Y+ SAI I R GR GR G+ + K
Sbjct: 224 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGT 276
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 79.6 bits (195), Expect = 3e-20
Identities = 49/112 (43%), Positives = 74/112 (66%)
Query: 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107
++F ++ + +EL +L D V I+SD Q++RD +++ FR+G ILI+T+LL
Sbjct: 29 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 88
Query: 108 RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLLR 159
RGID + V LV+NYD P++ +YIHRIGR GR GR+G A+ F T +D +R
Sbjct: 89 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMR 140
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 79.2 bits (194), Expect = 4e-20
Identities = 47/119 (39%), Positives = 71/119 (59%)
Query: 41 ILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWIL 100
+L E LVF ++K +EL + L G IH D +Q QR+ V+R F+ +I IL
Sbjct: 23 LLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 82
Query: 101 ITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLLR 159
I T+++ RGID + V+NY P + SY+HRIGR GR G++GKA++ +++ LR
Sbjct: 83 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLR 141
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 81.0 bits (199), Expect = 6e-20
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 15/124 (12%)
Query: 41 ILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWIL 100
IL + +++ ++ E A+E+Y L + + F G I L
Sbjct: 20 ILEKLGTGGIIYARTGEEAEEIYESL------KNKFRIGIVTATKKGDYEKFVEGEIDHL 73
Query: 101 ITTE----LLGRGIDF-RTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155
I T L RG+D +R V P S+ I + + + ++
Sbjct: 74 IGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMVKLLAYLYRNV 129
Query: 156 PLLR 159
+
Sbjct: 130 DEIE 133
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 73.8 bits (180), Expect = 1e-17
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105
+ +++F + E I + I ++++R+ ++ FRTGR ++++++
Sbjct: 93 KDKIIIFTRHNELV-----YRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQV 147
Query: 106 LGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFT 151
L GID + V SA YI R+GR R + K +
Sbjct: 148 LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 193
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 69.2 bits (168), Expect = 4e-16
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107
++F +K + L ++ V +H D QK+R+++++ FR+G +LI+T++
Sbjct: 36 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 95
Query: 108 RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLLR 159
RG+D V L++NYD P++ YIHRIGR+GR GR+G A+ F D +LR
Sbjct: 96 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILR 147
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 68.1 bits (165), Expect = 1e-15
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107
++F Q++ A+ L E+I DG V ++ + T +QR ++++ FR G+ +LITT +
Sbjct: 34 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCA 93
Query: 108 RGIDFRTVRLVVNYDFPSSAI------SYIHRIGRAGRGGREGKAVTFFTKQDAPLLR 159
RGID + V +VVN+D P +Y+HRIGR GR G++G A + P L
Sbjct: 94 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLM 151
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 66.7 bits (162), Expect = 2e-15
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108
L+F SK++ EL +L+ GIN + +++ T+ L
Sbjct: 38 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTN-------GDVVVVATDALMT 90
Query: 109 GIDFRT---VRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154
G + + P A+S R GR GR G+ G F +
Sbjct: 91 GFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPG-IYRFVAPGE 137
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 67.0 bits (162), Expect = 6e-15
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107
+++ S+ + ++ L GI+ H+ R +V F+ + I++ T G
Sbjct: 32 SGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 91
Query: 108 RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLLR 159
GI+ VR VV++D P + SY GRAGR G +A+ F+ D LR
Sbjct: 92 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 143
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 67.3 bits (163), Expect = 1e-14
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 23/132 (17%)
Query: 42 LLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILI 101
+ + + FV S + ++ L +G V + + RT ++
Sbjct: 174 VTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIK----TRTNDWDFVV 229
Query: 102 TTELLGRGIDF---------RTVRLVVNYDFPS----------SAISYIHRIGRAGRGGR 142
TT++ G +F R ++ V+ D + S R GR GR +
Sbjct: 230 TTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPK 289
Query: 143 EGKAVTFFTKQD 154
+ +
Sbjct: 290 NENDQYIYMGEP 301
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 61.0 bits (147), Expect = 6e-13
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108
LV +K+ A++L + L GI V +HS+ +R ++R R G+ +L+ LL
Sbjct: 34 TLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 93
Query: 109 GIDFRTVRLVVNYD-----FPSSAISYIHRIGRAGRGGR 142
G+D V LV D F S S I IGRA R
Sbjct: 94 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN 132
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 59.3 bits (143), Expect = 3e-12
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108
LV V + A+EL + L+ GI +H + +R ++R R G L+ LL
Sbjct: 34 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLRE 93
Query: 109 GIDFRTVRLVVNYD-----FPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155
G+D V LV D F S S I IGRA R R + +A
Sbjct: 94 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEA 145
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 51.6 bits (122), Expect = 2e-09
Identities = 39/112 (34%), Positives = 63/112 (56%)
Query: 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107
++F S R + L ++ G + H+ Q++R+ V FR G++ L+ ++LL
Sbjct: 34 QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 93
Query: 108 RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLLR 159
RGID + V +V+N+DFP +A +Y+HRIGR+GR G G A+ D L
Sbjct: 94 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLY 145
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 51.8 bits (123), Expect = 2e-09
Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 39/150 (26%)
Query: 48 PVLVFVQSKERAQELYNELIYDGIN------------------------------VDVIH 77
VLVF ++ A++ +L H
Sbjct: 42 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 101
Query: 78 SDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVV-------NYDFPSSAISY 130
+ QR V +FR G I +++ T L G++ R++V Y Y
Sbjct: 102 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEY 161
Query: 131 IHRIGRAGRGGR--EGKAVTFFTKQDAPLL 158
GRAGR G G+A+ K+D +
Sbjct: 162 KQMAGRAGRPGMDERGEAIIIVGKRDREIA 191
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 49.4 bits (117), Expect = 2e-08
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 68 YDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSA 127
+ + ++H +Q+++D V+ F GR IL++T ++ GID ++V +
Sbjct: 62 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFG 121
Query: 128 ISYIHR-IGRAGRGGREGKAVTFFTKQD 154
++ +H+ GR GRGG+E
Sbjct: 122 LAQLHQLRGRVGRGGQEAYCFLVVGDVG 149
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 48.1 bits (113), Expect = 3e-08
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107
V++FV+S +R L L+ IH Q++R + + F+ + IL+ T L G
Sbjct: 29 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 88
Query: 108 RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154
RG+D V + NYD P + +Y+HR+ RAGR G +G A+TF + ++
Sbjct: 89 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 135
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 43.3 bits (102), Expect = 2e-06
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107
PVLV + E ++ + L GI V+++ +++ + + + G + I T + G
Sbjct: 36 PVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAV--TIATNMAG 93
Query: 108 RGIDFRTVRLVVNYD--------FPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLLR 159
RG D + V S GR+GR G G + + +D L+R
Sbjct: 94 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED-ELMR 152
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 38.0 bits (88), Expect = 2e-04
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 22/126 (17%)
Query: 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105
+ P F+ S A + L G +V V++ K + + + + ++ T++
Sbjct: 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDI 91
Query: 106 LGRG--------IDFRTVRLVVNYD----------FPSSAISYIHRIGRAGRGGREGKAV 147
G +D RT V D SA S R GR GR
Sbjct: 92 AEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDS 151
Query: 148 TFFTKQ 153
++++
Sbjct: 152 YYYSEP 157
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling
factor, TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 28.0 bits (61), Expect = 0.46
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 48 PVLVFVQSKERAQELYNEL 66
PV++ + A L++E+
Sbjct: 16 PVVLIAPDMQNALRLHDEI 34
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 27.8 bits (61), Expect = 0.61
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 48 PVLVFVQSKERAQELYNEL 66
P LV +K A +LY+EL
Sbjct: 58 PTLVIAHNKTLAGQLYSEL 76
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 27.5 bits (60), Expect = 0.72
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 48 PVLVFVQSKERAQELYNEL 66
P LV +K A +L E
Sbjct: 55 PALVLAPNKILAAQLAAEF 73
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 97
Score = 26.1 bits (57), Expect = 0.88
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 46 EPPVLVFVQSK---ERAQELYNELIYDGINVDVIHSDRTQKQR 85
+ V + K E +L G+NV V +R +
Sbjct: 3 KKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQ 45
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 26.4 bits (57), Expect = 1.6
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW---ILITTEL 105
V++ + + + K+R +V F +++++
Sbjct: 121 VVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKA 180
Query: 106 LGRGIDFRTVRLVVNYDFPSS------AISYIHRIGR 136
G G++ +V +D + A++ + R G+
Sbjct: 181 GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQ 217
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 264
Score = 26.3 bits (57), Expect = 1.8
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 60 QELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILI-TTELLGRGIDFRTVRLV 118
+ I+V ++ T +++ + R G+I ++I T L+ + F+ + LV
Sbjct: 150 RRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLV 209
Query: 119 V 119
+
Sbjct: 210 I 210
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 274
Score = 25.1 bits (54), Expect = 4.9
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 74 DVIHSDRTQKQRDNVVRSFRTGRIWIL 100
+H+++T+ Q +V + G + L
Sbjct: 21 KTLHTEQTEFQHLEMVETEEFGNMLFL 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.399
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 570,353
Number of extensions: 24733
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 31
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.4 bits)