Query psy5761
Match_columns 144
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 46136
Date Fri Aug 16 17:21:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01652 IF4E: Eukaryotic init 12.9 1E+02 0.0022 22.3 0.9 13 131-143 55-67 (165)
2 KOG1670|consensus 11.7 67 0.0015 26.8 -0.3 13 131-143 87-99 (212)
3 PTZ00040 translation initiatio 6.8 1.9E+02 0.004 23.9 0.4 12 132-143 110-121 (233)
4 PF10215 Ost4: Oligosaccaryltr 5.4 1.9E+02 0.004 18.0 -0.3 7 1-7 1-7 (35)
5 PF07202 Tcp10_C: T-complex pr 5.1 75 0.0016 25.0 -2.7 40 19-58 72-111 (179)
6 PF03443 Glyco_hydro_61: Glyco 4.0 3.9E+02 0.0084 21.1 0.5 8 133-140 150-157 (218)
7 PF04369 Lactococcin: Lactococ 3.9 2.6E+02 0.0056 19.4 -0.5 12 2-13 10-21 (60)
8 PF10989 DUF2808: Protein of u 3.7 4.9E+02 0.011 18.9 0.8 14 130-143 117-130 (146)
9 PF07202 Tcp10_C: T-complex pr 3.6 1.1E+02 0.0025 24.0 -2.7 114 19-133 63-176 (179)
10 PTZ00449 104 kDa microneme/rho 3.4 3.9E+03 0.084 19.8 11.3 119 10-128 521-643 (943)
No 1
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=12.91 E-value=1e+02 Score=22.32 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=10.5
Q ss_pred ccceeeecccccC
Q psy5761 131 QDMYLFRAEIKPA 143 (144)
Q Consensus 131 qdmylfraeikpa 143 (144)
.++|||+..|+|+
T Consensus 55 ~~~~lFk~gI~P~ 67 (165)
T PF01652_consen 55 SNYHLFKKGIKPM 67 (165)
T ss_dssp EEEEEEETTC-SS
T ss_pred cceeeeecccccC
Confidence 4789999999995
No 2
>KOG1670|consensus
Probab=11.74 E-value=67 Score=26.77 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=11.1
Q ss_pred ccceeeecccccC
Q psy5761 131 QDMYLFRAEIKPA 143 (144)
Q Consensus 131 qdmylfraeikpa 143 (144)
-|+|||+.-|+|-
T Consensus 87 sDy~lFk~gI~Pm 99 (212)
T KOG1670|consen 87 SDYSLFKKGIRPM 99 (212)
T ss_pred ccHHHHhcCCCcc
Confidence 5899999999883
No 3
>PTZ00040 translation initiation factor E4; Provisional
Probab=6.75 E-value=1.9e+02 Score=23.91 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=10.7
Q ss_pred cceeeecccccC
Q psy5761 132 DMYLFRAEIKPA 143 (144)
Q Consensus 132 dmylfraeikpa 143 (144)
++|||+..|+|+
T Consensus 110 ~~~lFK~GIkP~ 121 (233)
T PTZ00040 110 AVMIFKDGIQPM 121 (233)
T ss_pred eeeeecCCCeEC
Confidence 589999999995
No 4
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=5.38 E-value=1.9e+02 Score=17.97 Aligned_cols=7 Identities=71% Similarity=0.895 Sum_probs=2.7
Q ss_pred CCccccc
Q psy5761 1 MISDERL 7 (144)
Q Consensus 1 misdekL 7 (144)
||||..|
T Consensus 1 MIsD~qL 7 (35)
T PF10215_consen 1 MISDVQL 7 (35)
T ss_dssp --SSHHH
T ss_pred CCcHHHH
Confidence 5666544
No 5
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=5.09 E-value=75 Score=24.99 Aligned_cols=40 Identities=28% Similarity=0.680 Sum_probs=16.8
Q ss_pred CCCccCCCCCCCccCCCCCCCCcCCCCCCCccCCCCCCCc
Q psy5761 19 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 58 (144)
Q Consensus 19 PdGnQD~tKPDG~qD~kKPeG~qd~kkPeg~qD~~KP~G~ 58 (144)
|+|.-...-|||+++=.-|+|..---.|+|...---|+|-
T Consensus 72 pngQ~E~h~pDG~keI~fPDGt~k~~~~dG~e~~~fpDGT 111 (179)
T PF07202_consen 72 PNGQIEKHYPDGSKEIVFPDGTIKYIHPDGREETVFPDGT 111 (179)
T ss_pred CCCceEEEcCCCCEEEEeCCCcEEEEeCCCcEEEECCCce
Confidence 3443344444444444444444433334444444444443
No 6
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The only known activity within this family is that of endoglucanase (3.2.1.4 from EC) GH61 from CAZY ; PDB: 4EIS_B 2VTC_A 4EIR_B 3EJA_D 3EII_A.
Probab=4.01 E-value=3.9e+02 Score=21.15 Aligned_cols=8 Identities=63% Similarity=1.011 Sum_probs=5.2
Q ss_pred ceeeeccc
Q psy5761 133 MYLFRAEI 140 (144)
Q Consensus 133 mylfraei 140 (144)
-||+|.||
T Consensus 150 ~YLlR~E~ 157 (218)
T PF03443_consen 150 QYLLRHEI 157 (218)
T ss_dssp EEEEEEEE
T ss_pred CceEEecc
Confidence 46777765
No 7
>PF04369 Lactococcin: Lactococcin-like family; InterPro: IPR007464 Bacteriocins are produced by bacteria to inhibit the growth of similar or closely related bacterial strains. The class II bacteriocins are small heat-stable proteins for which disulphide bonds are the only modification to the peptide. Lactococcin A and B are class-IId bacteriocins (one-peptide non-pediocin-like bacteriocin) [, ].; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=3.93 E-value=2.6e+02 Score=19.42 Aligned_cols=12 Identities=50% Similarity=0.695 Sum_probs=9.3
Q ss_pred CccccccCcCCC
Q psy5761 2 ISDERLEKPEGR 13 (144)
Q Consensus 2 isdekLddqnGn 13 (144)
+|||.|.+-||-
T Consensus 10 ~sdeeL~~i~GG 21 (60)
T PF04369_consen 10 LSDEELSKINGG 21 (60)
T ss_pred cCHHHHhhccCC
Confidence 688888887774
No 8
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=3.67 E-value=4.9e+02 Score=18.89 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=9.9
Q ss_pred cccceeeecccccC
Q psy5761 130 RQDMYLFRAEIKPA 143 (144)
Q Consensus 130 rqdmylfraeikpa 143 (144)
...||+|.+...|+
T Consensus 117 ~~G~Y~f~v~a~p~ 130 (146)
T PF10989_consen 117 SGGTYQFNVTAFPP 130 (146)
T ss_pred CCCeEEEEEEEECC
Confidence 34788888876654
No 9
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=3.63 E-value=1.1e+02 Score=23.98 Aligned_cols=114 Identities=26% Similarity=0.506 Sum_probs=0.0
Q ss_pred CCCccCCCCCCCccCCCCCCCCcCCCCCCCccCCCCCCCccCCCCCcccccCCCCcccccCCCCcccccCCCCcccccCC
Q psy5761 19 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 98 (144)
Q Consensus 19 PdGnQD~tKPDG~qD~kKPeG~qd~kkPeg~qD~~KP~G~QD~~~pegrqdrkkpegrqdrkkpegrqdrkkpegrqdrk 98 (144)
|||.+-=.-|+|..+..-|+|+++---|+|..-.--|+|...---|.|-.-.-.+.|-.--.-|.| |-.---.+-..|.
T Consensus 63 pdG~ev~~FpngQ~E~h~pDG~keI~fPDGt~k~~~~dG~e~~~fpDGT~~~~~~nG~k~i~~pnG-q~ei~t~~~krre 141 (179)
T PF07202_consen 63 PDGLEVYEFPNGQIEKHYPDGSKEIVFPDGTIKYIHPDGREETVFPDGTIVTIDPNGDKTITFPNG-QKEIHTADFKRRE 141 (179)
T ss_pred CCCcEEEEeCCCceEEEcCCCCEEEEeCCCcEEEEeCCCcEEEECCCceEEEEeCCCcEEEEeCCC-cEEEEccccEEEE
Q ss_pred CCcccccCCCCcccccCCCCcccccCCCCCCcccc
Q psy5761 99 KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDM 133 (144)
Q Consensus 99 kpegrqdrkkpegrqdrkkpegrqdrkkpegrqdm 133 (144)
-|.|-..---|.|+|.-+-+.||-.-|-..|.--|
T Consensus 142 yPDGTvk~vy~dG~qet~y~~gr~r~kd~~g~~~~ 176 (179)
T PF07202_consen 142 YPDGTVKTVYPDGRQETRYASGRVRIKDKDGNVIM 176 (179)
T ss_pred cCCCCEEEEecCCCEEEEeCCCcEEEecCCCCEEe
No 10
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=3.41 E-value=3.9e+03 Score=19.82 Aligned_cols=119 Identities=26% Similarity=0.429 Sum_probs=0.0
Q ss_pred cCCCcCCCCCCCcc-CCCCCCCccCCCCCCCCcC---CCCCCCccCCCCCCCccCCCCCcccccCCCCcccccCCCCccc
Q psy5761 10 PEGRQDRKKPEGRQ-DRKKPEGRQDRKKPEGRQD---RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 85 (144)
Q Consensus 10 qnGnQD~~KPdGnQ-D~tKPDG~qD~kKPeG~qd---~kkPeg~qD~~KP~G~QD~~~pegrqdrkkpegrqdrkkpegr 85 (144)
+.|--|+.+-.|.. |+.--++.++.-+|...++ +|+|.--+.-+-------.+.|+.-++-+-|..-..-++|+.-
T Consensus 521 PkgPG~s~~~~GehEdSkeskePKe~g~p~~~KE~~~gKKPGpaKehkPsKip~lSK~Pe~PK~Pk~PKdPksPK~PK~P 600 (943)
T PTZ00449 521 PKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRP 600 (943)
T ss_pred CCCCCcCCCCCCccCCcccCCCccccCCCCCCcccccCCCCCCcCCCCCccCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred ccCCCCcccccCCCCcccccCCCCcccccCCCCcccccCCCCC
Q psy5761 86 QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 128 (144)
Q Consensus 86 qdrkkpegrqdrkkpegrqdrkkpegrqdrkkpegrqdrkkpe 128 (144)
..-+.|...+.-+-|+--.-.|.|.--+.-+.|..-..-..|+
T Consensus 601 rspq~P~~PkSPk~Pe~~d~PkSPK~PespksPKsP~sPqrP~ 643 (943)
T PTZ00449 601 RSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPS 643 (943)
T ss_pred CCCCCCCCCCCCCCcccccCCCCCCcccccCCCCCCCCCCCCC
Done!