Query psy5761
Match_columns 144
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 29240
Date Fri Aug 16 17:22:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2idr_A Eukaryotic translation 16.5 49 0.0017 24.1 1.2 14 130-143 56-69 (177)
2 1l8b_A Eukaryotic translation 14.8 54 0.0018 24.1 1.0 14 130-143 61-74 (190)
3 3hxi_A Eukaryotic translation 13.8 59 0.002 24.2 1.0 14 130-143 61-74 (189)
4 1ipb_A Eukaryotic translation 13.3 62 0.0021 24.5 1.0 14 130-143 88-101 (217)
5 2jgb_A Eukaryotic translation 12.9 65 0.0022 23.8 1.0 14 130-143 71-84 (195)
6 1ap8_A Translation initiation 12.7 61 0.0021 24.6 0.8 14 130-143 90-103 (213)
7 3m94_A Translation initiation 12.4 69 0.0024 23.9 1.0 14 130-143 54-67 (189)
8 4axg_A Eukaryotic translation 9.8 94 0.0032 24.0 1.0 14 130-143 121-134 (248)
9 1rkl_A Dolichyl-diphosphooligo 6.2 1.6E+02 0.0055 17.7 0.7 7 1-7 1-7 (36)
10 4eir_A Polysaccharide monooxyg 5.1 1.8E+02 0.0061 22.4 0.5 9 133-141 146-154 (223)
No 1
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=16.52 E-value=49 Score=24.08 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=12.2
Q ss_pred cccceeeecccccC
Q psy5761 130 RQDMYLFRAEIKPA 143 (144)
Q Consensus 130 rqdmylfraeikpa 143 (144)
..|+|||+..|+|.
T Consensus 56 ~~~~~lFK~gI~P~ 69 (177)
T 2idr_A 56 GADFHCFKNKIEPK 69 (177)
T ss_dssp TCEEEEEEGGGCCS
T ss_pred CCEEEEEcCCceec
Confidence 46899999999995
No 2
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=14.79 E-value=54 Score=24.14 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=12.2
Q ss_pred cccceeeecccccC
Q psy5761 130 RQDMYLFRAEIKPA 143 (144)
Q Consensus 130 rqdmylfraeikpa 143 (144)
..|+|||+..|+|.
T Consensus 61 ~~~y~lFK~gI~P~ 74 (190)
T 1l8b_A 61 GCDYSLFKDGIEPM 74 (190)
T ss_dssp TEEEEEEETTCCSS
T ss_pred CCEEEEECCCceec
Confidence 46899999999995
No 3
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=13.77 E-value=59 Score=24.15 Aligned_cols=14 Identities=36% Similarity=0.997 Sum_probs=12.2
Q ss_pred cccceeeecccccC
Q psy5761 130 RQDMYLFRAEIKPA 143 (144)
Q Consensus 130 rqdmylfraeikpa 143 (144)
..|+|||+..|+|.
T Consensus 61 ~~d~~lFK~gI~P~ 74 (189)
T 3hxi_A 61 GKDLYMFKSDIMPK 74 (189)
T ss_dssp TCEEEEEETTSCSS
T ss_pred CceEEEECCCcccC
Confidence 46899999999995
No 4
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=13.28 E-value=62 Score=24.54 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=12.1
Q ss_pred cccceeeecccccC
Q psy5761 130 RQDMYLFRAEIKPA 143 (144)
Q Consensus 130 rqdmylfraeikpa 143 (144)
..|+|||+..|+|.
T Consensus 88 ~~dy~lFK~GI~P~ 101 (217)
T 1ipb_A 88 GCDYSLFKDGIEPM 101 (217)
T ss_dssp TCEEEEEETTCCSS
T ss_pred CCEEEEECCCceec
Confidence 46899999999995
No 5
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=12.93 E-value=65 Score=23.85 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=12.2
Q ss_pred cccceeeecccccC
Q psy5761 130 RQDMYLFRAEIKPA 143 (144)
Q Consensus 130 rqdmylfraeikpa 143 (144)
..|+|||+..|+|.
T Consensus 71 ~~dy~lFK~gI~P~ 84 (195)
T 2jgb_A 71 HSDFHLFKEGIKPM 84 (195)
T ss_dssp EEEEEEEETTCCSS
T ss_pred CceEEEEeCCCccc
Confidence 46899999999995
No 6
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=12.72 E-value=61 Score=24.56 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=12.2
Q ss_pred cccceeeecccccC
Q psy5761 130 RQDMYLFRAEIKPA 143 (144)
Q Consensus 130 rqdmylfraeikpa 143 (144)
..|+|||+..|+|.
T Consensus 90 ~~dy~lFK~GI~P~ 103 (213)
T 1ap8_A 90 KSDYHVFRNDVRPE 103 (213)
T ss_dssp CCEEEEECSSCCSC
T ss_pred CCEEEEEcCCceec
Confidence 46899999999995
No 7
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=12.39 E-value=69 Score=23.86 Aligned_cols=14 Identities=50% Similarity=0.916 Sum_probs=12.1
Q ss_pred cccceeeecccccC
Q psy5761 130 RQDMYLFRAEIKPA 143 (144)
Q Consensus 130 rqdmylfraeikpa 143 (144)
..|+|||+..|+|.
T Consensus 54 ~~dy~lFK~gI~P~ 67 (189)
T 3m94_A 54 GSDYYLFKEGIKPM 67 (189)
T ss_dssp TCEEEEEETTCCSS
T ss_pred CCeEEEecCCcccC
Confidence 45899999999995
No 8
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=9.82 E-value=94 Score=24.00 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.9
Q ss_pred cccceeeecccccC
Q psy5761 130 RQDMYLFRAEIKPA 143 (144)
Q Consensus 130 rqdmylfraeikpa 143 (144)
..++|||+..|+|.
T Consensus 121 ~~~~~lFK~gI~P~ 134 (248)
T 4axg_A 121 GSDYSLFKKNIRPM 134 (248)
T ss_dssp TEEEEEEETTCCSS
T ss_pred CceEEEEcCCcccC
Confidence 46789999999995
No 9
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=6.21 E-value=1.6e+02 Score=17.69 Aligned_cols=7 Identities=86% Similarity=1.156 Sum_probs=4.2
Q ss_pred CCccccc
Q psy5761 1 MISDERL 7 (144)
Q Consensus 1 misdekL 7 (144)
||||..|
T Consensus 1 MIsD~qL 7 (36)
T 1rkl_A 1 MISDEQL 7 (36)
T ss_dssp CCSSCGG
T ss_pred CCcHHHH
Confidence 6666554
No 10
>4eir_A Polysaccharide monooxygenase-2; GH61, PMO, cellulase, biofuels copper monooxygenase, peroxide, superoxide, CBP21, beta-SAN fold, secreted; HET: HIC NAG GOL; 1.10A {Neurospora crassa}
Probab=5.13 E-value=1.8e+02 Score=22.39 Aligned_cols=9 Identities=56% Similarity=0.884 Sum_probs=7.0
Q ss_pred ceeeecccc
Q psy5761 133 MYLFRAEIK 141 (144)
Q Consensus 133 mylfraeik 141 (144)
-||+|+||-
T Consensus 146 ~YllR~E~I 154 (223)
T 4eir_A 146 QYLLRAEMI 154 (223)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEeee
Confidence 489998874
Done!