Query psy5761
Match_columns 144
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 13730
Date Fri Aug 16 17:22:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5761.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5761hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l8ba_ d.86.1.1 (A:) Translat 9.1 50 0.0037 22.0 1.0 13 131-143 54-66 (182)
2 d1rkla_ f.23.30.1 (A:) Oligosa 7.3 61 0.0045 18.4 0.7 7 1-7 1-7 (36)
3 d1ap8a_ d.86.1.1 (A:) Translat 5.0 1E+02 0.0073 21.3 0.8 13 131-143 91-103 (213)
4 d2h7aa1 d.350.1.1 (A:2-110) Hy 4.0 1.2E+02 0.009 20.1 0.6 10 129-138 22-31 (109)
5 d1tdza1 a.156.1.2 (A:132-219) 3.8 76 0.0055 19.2 -0.6 12 133-144 45-56 (88)
6 d1k3xa1 a.156.1.2 (A:125-213) 3.0 1.2E+02 0.0087 17.9 -0.2 11 134-144 50-60 (89)
7 d1ee8a1 a.156.1.2 (A:122-210) 2.8 1.4E+02 0.0099 17.9 -0.1 10 134-143 46-55 (89)
8 d1r2za1 a.156.1.2 (A:135-228) 2.4 1.2E+02 0.0089 18.3 -0.7 12 132-143 44-55 (94)
9 d1k82a1 a.156.1.2 (A:129-216) 2.3 1.3E+02 0.0094 18.0 -0.7 12 132-143 44-55 (88)
10 d1nnxa_ b.40.10.1 (A:) Hypothe 2.0 2.8E+02 0.02 17.6 0.6 9 130-138 50-58 (106)
No 1
>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.05 E-value=50 Score=22.00 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=11.3
Q ss_pred ccceeeecccccC
Q psy5761 131 QDMYLFRAEIKPA 143 (144)
Q Consensus 131 qdmylfraeikpa 143 (144)
.++|||+..|+|.
T Consensus 54 ~~~~lFk~gI~P~ 66 (182)
T d1l8ba_ 54 CDYSLFKDGIEPM 66 (182)
T ss_dssp EEEEEEETTCCSS
T ss_pred ceEEEEecCccCC
Confidence 4789999999995
No 2
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.26 E-value=61 Score=18.42 Aligned_cols=7 Identities=86% Similarity=1.156 Sum_probs=5.1
Q ss_pred CCccccc
Q psy5761 1 MISDERL 7 (144)
Q Consensus 1 misdekL 7 (144)
||||+.|
T Consensus 1 misd~ql 7 (36)
T d1rkla_ 1 MISDEQL 7 (36)
T ss_dssp CCSSCGG
T ss_pred Ccchhhc
Confidence 6777766
No 3
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.96 E-value=1e+02 Score=21.34 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=10.9
Q ss_pred ccceeeecccccC
Q psy5761 131 QDMYLFRAEIKPA 143 (144)
Q Consensus 131 qdmylfraeikpa 143 (144)
.++||||..|+|.
T Consensus 91 ~~~~lFk~gI~P~ 103 (213)
T d1ap8a_ 91 SDYHVFRNDVRPE 103 (213)
T ss_dssp CEEEEECSSCCSC
T ss_pred cEEEEEecCccCC
Confidence 4788999999985
No 4
>d2h7aa1 d.350.1.1 (A:2-110) Hypothetical protein YcgL {Escherichia coli [TaxId: 562]}
Probab=3.97 E-value=1.2e+02 Score=20.08 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=7.5
Q ss_pred Ccccceeeec
Q psy5761 129 GRQDMYLFRA 138 (144)
Q Consensus 129 grqdmylfra 138 (144)
-+.+||||-+
T Consensus 22 kK~~tYLYV~ 31 (109)
T d2h7aa1 22 KRDQTYLYVE 31 (109)
T ss_dssp TSSSCEEEES
T ss_pred CCCCeEEEEE
Confidence 3578999965
No 5
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=3.79 E-value=76 Score=19.16 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=8.3
Q ss_pred ceeeecccccCC
Q psy5761 133 MYLFRAEIKPAT 144 (144)
Q Consensus 133 mylfraeikpat 144 (144)
..||+|-|.|.+
T Consensus 45 EiLf~a~I~P~~ 56 (88)
T d1tdza1 45 EVLWLAKIHPEK 56 (88)
T ss_dssp HHHHHTTCCTTC
T ss_pred HHHHHHHcCccc
Confidence 347888887753
No 6
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=3.02 E-value=1.2e+02 Score=17.94 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=7.0
Q ss_pred eeeecccccCC
Q psy5761 134 YLFRAEIKPAT 144 (144)
Q Consensus 134 ylfraeikpat 144 (144)
.||+|.|.|.+
T Consensus 50 iL~~a~i~P~~ 60 (89)
T d1k3xa1 50 ILWQVGLTGNH 60 (89)
T ss_dssp HHHHHTCCSSC
T ss_pred HHHHhcccccC
Confidence 36777777653
No 7
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=2.79 E-value=1.4e+02 Score=17.87 Aligned_cols=10 Identities=50% Similarity=0.816 Sum_probs=7.1
Q ss_pred eeeecccccC
Q psy5761 134 YLFRAEIKPA 143 (144)
Q Consensus 134 ylfraeikpa 143 (144)
.||+|-|.|.
T Consensus 46 iLf~a~I~P~ 55 (89)
T d1ee8a1 46 ALFRARLSPF 55 (89)
T ss_dssp HHHHTTCCSS
T ss_pred HHHHHHcCcc
Confidence 4777777775
No 8
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.42 E-value=1.2e+02 Score=18.34 Aligned_cols=12 Identities=58% Similarity=0.780 Sum_probs=7.9
Q ss_pred cceeeecccccC
Q psy5761 132 DMYLFRAEIKPA 143 (144)
Q Consensus 132 dmylfraeikpa 143 (144)
|..||+|-|.|.
T Consensus 44 ~EiLf~a~I~P~ 55 (94)
T d1r2za1 44 DESLFRAGILPG 55 (94)
T ss_dssp HHHHHHHTCCTT
T ss_pred HHHHHHHHhhhh
Confidence 344777777775
No 9
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=2.28 E-value=1.3e+02 Score=17.99 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=7.7
Q ss_pred cceeeecccccC
Q psy5761 132 DMYLFRAEIKPA 143 (144)
Q Consensus 132 dmylfraeikpa 143 (144)
|..||+|-|.|.
T Consensus 44 ~EiLf~a~I~P~ 55 (88)
T d1k82a1 44 SESLFAAGIHPD 55 (88)
T ss_dssp HHHHHHHTCCTT
T ss_pred HHHHHHHCCCcc
Confidence 334777777764
No 10
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]}
Probab=2.02 E-value=2.8e+02 Score=17.60 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=6.0
Q ss_pred cccceeeec
Q psy5761 130 RQDMYLFRA 138 (144)
Q Consensus 130 rqdmylfra 138 (144)
+.|.|+|+-
T Consensus 50 ~~d~Y~F~D 58 (106)
T d1nnxa_ 50 SDDLYVFKD 58 (106)
T ss_dssp ETTEEEEEE
T ss_pred CCceEEEEC
Confidence 357788863
Done!