RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5761
(144 letters)
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 56.1 bits (136), Expect = 4e-10
Identities = 28/131 (21%), Positives = 55/131 (41%)
Query: 3 SDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 62
S + R++R + R +K ++ E R D + ++R + R DR+
Sbjct: 120 SAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRE 179
Query: 63 KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQ 122
+ +R + R++R + +DR+ + DR++ GR+D GR+ R+ +
Sbjct: 180 DRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDAR 239
Query: 123 DRKKPEGRQDM 133
E R D
Sbjct: 240 GDDNREDRGDR 250
Score = 53.8 bits (130), Expect = 3e-09
Identities = 24/123 (19%), Positives = 52/123 (42%)
Query: 10 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 69
+ + R++R + R +K ++ E R D + ++R + R D
Sbjct: 118 AASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGD 177
Query: 70 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEG 129
R+ + +R + R++R + +DR+ + DR++ GR+D GR+ R+
Sbjct: 178 REDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRD 237
Query: 130 RQD 132
+
Sbjct: 238 ARG 240
Score = 53.4 bits (129), Expect = 4e-09
Identities = 27/125 (21%), Positives = 52/125 (41%)
Query: 8 EKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 67
+ R +K ++ E R D + ++R + R DR+ + +R + R
Sbjct: 134 GEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRR 193
Query: 68 QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 127
++R + +DR+ + DR++ GR+D GR+ R+ + E R DR
Sbjct: 194 EERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGD 253
Query: 128 EGRQD 132
+G
Sbjct: 254 DGEGR 258
Score = 52.2 bits (126), Expect = 1e-08
Identities = 23/130 (17%), Positives = 52/130 (40%)
Query: 3 SDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 62
++ + + + R++R + R +K ++ E R D
Sbjct: 102 AEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161
Query: 63 KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQ 122
+ ++R + R DR+ + +R + R++R + +DR+ + DR++ GR+
Sbjct: 162 ERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
Query: 123 DRKKPEGRQD 132
D GR+
Sbjct: 222 DGGDRRGRRR 231
Score = 50.3 bits (121), Expect = 5e-08
Identities = 26/121 (21%), Positives = 49/121 (40%)
Query: 4 DERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 63
K ++ E R D + ++R + R DR+ + +R + R++R +
Sbjct: 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGR 198
Query: 64 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 123
+DR+ + DR++ GR+D GR+ R+ + E R DR +G
Sbjct: 199 DGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGR 258
Query: 124 R 124
Sbjct: 259 G 259
Score = 49.5 bits (119), Expect = 9e-08
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 4 DERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 63
E R D + ++R + R DR+ + +R + R++R + +DR+
Sbjct: 148 GGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRD 207
Query: 64 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE--GRQDRKKPEGRQDRKKPEGR 121
+ DR++ GR+D GR+ R+ + E G +D EGR R+ R
Sbjct: 208 RREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFR 267
Query: 122 QDRKKPEGRQD 132
++ D
Sbjct: 268 DRDRRGRRGGD 278
Score = 46.1 bits (110), Expect = 1e-06
Identities = 26/124 (20%), Positives = 51/124 (41%)
Query: 8 EKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 67
+ ++R + R DR+ + +R + R++R + +DR+ + DR++ GR
Sbjct: 161 AERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGR 220
Query: 68 QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 127
+D GR+ R+ + E R DR +G + R + GR+
Sbjct: 221 RDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGG 280
Query: 128 EGRQ 131
R+
Sbjct: 281 NERE 284
Score = 40.7 bits (96), Expect = 9e-05
Identities = 16/121 (13%), Positives = 41/121 (33%)
Query: 13 RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 72
R+ + + + + + + R++R + R +K
Sbjct: 85 AAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARK 144
Query: 73 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 132
++ E R D + ++R + R DR+ + +R + R++R + +D
Sbjct: 145 AGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRD 204
Query: 133 M 133
Sbjct: 205 R 205
Score = 38.3 bits (90), Expect = 6e-04
Identities = 16/128 (12%), Positives = 39/128 (30%)
Query: 5 ERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
P R R+ + + + + + +
Sbjct: 68 ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQA 127
Query: 65 EGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDR 124
R++R + R +K ++ E R D + ++R + R DR+ + +R
Sbjct: 128 RERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAER 187
Query: 125 KKPEGRQD 132
+ R++
Sbjct: 188 GERGRREE 195
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 53.3 bits (129), Expect = 4e-09
Identities = 15/126 (11%), Positives = 43/126 (34%)
Query: 1 MISDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 60
+ +E K E +++ ++ + + + + E +
Sbjct: 37 TVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAA 96
Query: 61 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEG 120
R + + R+ + K ++ + ++ K+ R ++ G+ R++
Sbjct: 97 RPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGR 156
Query: 121 RQDRKK 126
R+ RKK
Sbjct: 157 RRRRKK 162
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 36.6 bits (85), Expect = 0.003
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 8 EKPEGRQDRKKPE--GRQDR-KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
KPE +QDR+KP R+DR ++ + R +R + EGR++R++ + + + + + R+
Sbjct: 598 AKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQ 657
Query: 65 EGRQDRKKPEGRQDRKKPEG-RQDRKKPEGRQ 95
+ K + ++ P RQ R+ E RQ
Sbjct: 658 QAEVTEKARTQDEQQQAPRRERQRRRNDEKRQ 689
Score = 36.2 bits (84), Expect = 0.004
Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 10 PEGRQDRKKPEGRQDRKKPEGRQDRKKPE--GRQDR-KKPEGRQDRKKPEGRQDRKKPEG 66
E + +++P + + KPE +QDR+KP R+DR ++ + R +R + EGR++R++
Sbjct: 583 GEETKPQEQPAPKAE-AKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRR 641
Query: 67 RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEG-RQDRKKPEGRQ 113
+ + + + + R+ + K + ++ P RQ R+ E RQ
Sbjct: 642 NRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQ 689
Score = 35.8 bits (83), Expect = 0.004
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 8 EKPEGRQDRKKPEGRQDRKKPE--GRQDR-KKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
E+P + + KPE +QDR+KP R+DR ++ + R +R + EGR++R++ + + +
Sbjct: 590 EQPAPKAE-AKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQ 648
Query: 65 EGRQDRKKPEGRQDRKKPEGRQDRKKPEG-RQDRKKPEGRQ 104
+ + R+ + K + ++ P RQ R+ E RQ
Sbjct: 649 QTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQ 689
Score = 29.2 bits (66), Expect = 0.85
Identities = 22/113 (19%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 5 ERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
+R E+ + R +R + EGR++R++ + + + + + R+ + K + ++ P
Sbjct: 616 DRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAP 675
Query: 65 EGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 117
R++R++ R D K+ Q K +++ E Q+ + + + RK+
Sbjct: 676 --RRERQRR--RNDEKRQA--QQEAKALNVEEQSVQETEQEERVQQVQPRRKQ 722
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 32.7 bits (74), Expect = 0.060
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 17 KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 76
KKP ++ K + KKPE +D K P+ ++ KKP+ + ++P + K PE
Sbjct: 559 KKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELL 618
Query: 77 ---QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDM 133
+ K+PE + K+P Q PE + K + + K P+ D K E D
Sbjct: 619 DIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDD 678
Query: 134 YLFRA 138
YL A
Sbjct: 679 YLDAA 683
Score = 32.4 bits (73), Expect = 0.077
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 3 SDERLEKPEGRQDRKKP-EGRQDRKKPEG-RQDRKKPEGRQDRKKPEGRQDR---KKPEG 57
SD+ E PEG + P + D++ EG +D K+ + ++ KP ++ KKP
Sbjct: 504 SDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGP 563
Query: 58 RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 117
++ K + KKPE +D K P+ ++ KKP+ + ++P + K PE K
Sbjct: 564 AKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKS 623
Query: 118 PEGRQDRKKPE 128
P+ + K P+
Sbjct: 624 PKRPESPKSPK 634
Score = 30.8 bits (69), Expect = 0.26
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 3 SDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 62
E E + ++ + EG + + EG + KKP ++ K + KKPE +D K
Sbjct: 528 EGEEGEHEDSKESDEPKEGGKPGETKEG-EVGKKPGPAKEHKPSKIPTLSKKPEFPKDPK 586
Query: 63 KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 118
P+ ++ KKP+ + ++P + K PE K P+ + K P+ ++P
Sbjct: 587 HPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRP 642
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 31.8 bits (72), Expect = 0.092
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 11 EGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDR 70
E ++R+K GR + E + R + R + R+ + + R ++ R D
Sbjct: 4 EPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRR---RYDS 60
Query: 71 KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQ--DRKKP 127
+ P + R ++ + R+ R + Q RK + R D K P
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKPP 119
Score = 28.7 bits (64), Expect = 1.2
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 6/108 (5%)
Query: 29 EGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQ------DRKKPEGRQDRKKP 82
E ++R+K GR + E + R + R + R+ R + R D + P
Sbjct: 4 EPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSP 63
Query: 83 EGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 130
+ R ++ + R+ R + Q RK + R
Sbjct: 64 RSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
Score = 28.7 bits (64), Expect = 1.3
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 5/113 (4%)
Query: 8 EKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 67
EK GR + E + R + R + R+ + + R ++ R D + P
Sbjct: 10 EKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRR---RYDSRSPRSL 66
Query: 68 QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQ--DRKKP 118
+ R ++ + R+ R + Q RK + R D K P
Sbjct: 67 RYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKPP 119
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 31.9 bits (72), Expect = 0.11
Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 13 RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 72
+ D + E +R EG + + + E + EG + K E + +
Sbjct: 632 KGDVAEAEHTGERTGEEG-----ERPTEAEGENGEESGGEAEQEGETE-TKGENESEGEI 685
Query: 73 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK-KPEGRQDRKKPEGRQDRKKPE 128
P R+ ++ EG + K+ + + + + E + + + EG +D + E ++ ++ E
Sbjct: 686 PAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVE 742
Score = 31.5 bits (71), Expect = 0.15
Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 22 RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 81
+ D + E +R EG + + + E + EG + K E + +
Sbjct: 632 KGDVAEAEHTGERTGEEG-----ERPTEAEGENGEESGGEAEQEGETE-TKGENESEGEI 685
Query: 82 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK-KPEGRQDRKKPEGRQD 132
P R+ ++ EG + K+ + + + + E + + + EG +D + E ++
Sbjct: 686 PAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEE 737
Score = 31.5 bits (71), Expect = 0.15
Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Query: 2 ISDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDR 61
+S + + E +R EG + + + E + EG + K E +
Sbjct: 630 LSKGDVAEAEHTGERTGEEG-----ERPTEAEGENGEESGGEAEQEGETE-TKGENESEG 683
Query: 62 KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK-KPEGRQDRKKPEGRQDRKKPEG 120
+ P R+ ++ EG + K+ + + + + E + + + EG +D + E ++ ++
Sbjct: 684 EIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEE-VE 742
Query: 121 RQDRKKPEGRQD 132
+ + EG+ +
Sbjct: 743 DEGEGEAEGKHE 754
Score = 28.4 bits (63), Expect = 1.5
Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 8 EKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 67
E E + EG + K E + + P R+ ++ EG + K+ + + + + E
Sbjct: 658 ENGEESGGEAEQEGETE-TKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Query: 68 QDRK-KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 126
+ + + EG +D + E ++ ++ + + EG+ + + EG + + EG + +
Sbjct: 717 HEGETEAEGTEDEGEIETGEEGEE-VEDEGEGEAEGKHEVET-EGDRKETEHEGETEAEG 774
Query: 127 PEG 129
E
Sbjct: 775 KED 777
>gnl|CDD|182217 PRK10062, PRK10062, hypothetical protein; Provisional.
Length = 303
Score = 30.5 bits (69), Expect = 0.23
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 92 EGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEG--RQDMYLFRAEI 140
E R+ ++ P RQ R + QD K E + K +G R D ++ AEI
Sbjct: 111 EARKHKEDPAQRQQRLEKLAAQDPLKFE----KDKVKGAIRTD-FILSAEI 156
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 28.3 bits (63), Expect = 1.7
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 17 KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 76
+Q KKPE + + P+ +K + K E PE +
Sbjct: 27 TSSNSKQPEKKPEIKPNENTPK--IPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKK 84
Query: 77 QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 109
D K + ++ K E ++ KKP+ Q
Sbjct: 85 PDPSKNKEEIEKPKDEPKKPDKKPQADQPNNVH 117
Score = 28.3 bits (63), Expect = 1.7
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 26 KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 85
+Q KKPE + + P+ +K + K E PE +
Sbjct: 27 TSSNSKQPEKKPEIKPNENTPK--IPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKK 84
Query: 86 QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 118
D K + ++ K E ++ KKP+ Q
Sbjct: 85 PDPSKNKEEIEKPKDEPKKPDKKPQADQPNNVH 117
Score = 28.3 bits (63), Expect = 1.7
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 35 KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 94
+Q KKPE + + P+ +K + K E PE +
Sbjct: 27 TSSNSKQPEKKPEIKPNENTPK--IPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKK 84
Query: 95 QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 127
D K + ++ K E ++ KKP+ Q
Sbjct: 85 PDPSKNKEEIEKPKDEPKKPDKKPQADQPNNVH 117
Score = 27.9 bits (62), Expect = 2.1
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 10 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 69
+Q KKPE + + P+ +K + K E PE + D
Sbjct: 29 SNSKQPEKKPEIKPNENTPK--IPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPD 86
Query: 70 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 100
K + ++ K E ++ KKP+ Q
Sbjct: 87 PSKNKEEIEKPKDEPKKPDKKPQADQPNNVH 117
Score = 27.5 bits (61), Expect = 2.6
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 44 KKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 103
+Q KKPE + + P+ +K + K E PE +
Sbjct: 27 TSSNSKQPEKKPEIKPNENTPK--IPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKK 84
Query: 104 QDRKKPEGRQDRKKPEGRQDRKKPEGRQD 132
D K + ++ K E ++ KKP+ Q
Sbjct: 85 PDPSKNKEEIEKPKDEPKKPDKKPQADQP 113
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors
including the Pad-1 protein (N. crassa), CAPER (M.
musculus) and CC1.3 (H.sapiens). These proteins are
characterized by an N-terminal arginine-rich, low
complexity domain followed by three (or in the case of
4 H. sapiens paralogs, two) RNA recognition domains
(rrm: pfam00706). These splicing factors are closely
related to the U2AF splicing factor family (TIGR01642).
A homologous gene from Plasmodium falciparum was
identified in the course of the analysis of that genome
at TIGR and was included in the seed.
Length = 457
Score = 27.9 bits (62), Expect = 1.8
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 12 GRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 71
+DR++ R D ++ + ++R + R R + R+DR GR+ R +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSR-SRDRSRRRRDRDYYRGRRGRSRSRSPNRYY 59
Query: 72 KPEGRQDRKKPEGRQDRKKPEGRQDRKK 99
+P G + ++ + R R E + ++
Sbjct: 60 RPRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 27.9 bits (62), Expect = 1.8
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 21 GRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 80
+DR++ R D ++ + ++R + R R + R+DR GR+ R +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSR-SRDRSRRRRDRDYYRGRRGRSRSRSPNRYY 59
Query: 81 KPEGRQDRKKPEGRQDRKKPEGRQDRKK 108
+P G + ++ + R R E + ++
Sbjct: 60 RPRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 27.9 bits (62), Expect = 1.8
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 30 GRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 89
+DR++ R D ++ + ++R + R R + R+DR GR+ R +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSR-SRDRSRRRRDRDYYRGRRGRSRSRSPNRYY 59
Query: 90 KPEGRQDRKKPEGRQDRKKPEGRQDRKK 117
+P G + ++ + R R E + ++
Sbjct: 60 RPRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 27.9 bits (62), Expect = 1.8
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 39 GRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 98
+DR++ R D ++ + ++R + R R + R+DR GR+ R +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSR-SRDRSRRRRDRDYYRGRRGRSRSRSPNRYY 59
Query: 99 KPEGRQDRKKPEGRQDRKKPEGRQDRKK 126
+P G + ++ + R R E + ++
Sbjct: 60 RPRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 27.9 bits (62), Expect = 2.2
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 48 GRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 107
+DR++ R D ++ + ++R + R R + R+DR GR+ R +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSR-SRDRSRRRRDRDYYRGRRGRSRSRSPNRYY 59
Query: 108 KPEGRQDRKKPEGRQDRKKPE 128
+P G + ++ + R R E
Sbjct: 60 RPRGDRSYRRDDRRSGRNTKE 80
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.0 bits (62), Expect = 2.1
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 3 SDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 62
++ LE + ++ D E D K E + DR++ E ++ G D
Sbjct: 3913 EEDLLETEQKSNEQSAANNESDLVSKE--DDNKALEDK-DRQEKEDEEEMSDDVGIDDEI 3969
Query: 63 KPEGRQDRKKPEGR-QDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 121
+P+ +++ +P +D PE D K E D K +D +++++ +
Sbjct: 3970 QPDIQENNSQPPPENEDLDLPE---DLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAE 4026
Query: 122 QDRKKPE 128
+D +
Sbjct: 4027 KDEPMQD 4033
>gnl|CDD|191698 pfam07202, Tcp10_C, T-complex protein 10 C-terminus. This family
represents the C-terminus (approximately 180 residues)
of eukaryotic T-complex protein 10. The T-complex is
involved in spermatogenesis in mice.
Length = 179
Score = 27.1 bits (60), Expect = 3.0
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 5 ERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKP 64
E L+ P G+ ++ P+G ++ P+G P+G+++ P+G R G ++ + P
Sbjct: 67 EVLQFPNGQTEKHFPDGSKEIHFPDGTVKILNPDGQEESVYPDGTVVRVSRNGDKEIEFP 126
Query: 65 EGRQD--------RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 103
G+++ R+ P+G P GRQ+ + GR K +GR
Sbjct: 127 NGQREIHTKRYKRREYPDGTVKTVYPNGRQETRYSSGRVRVKDKDGR 173
Score = 26.3 bits (58), Expect = 4.9
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 28 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 87
P+G + + P G+ ++ P+G ++ P+G P+G+++ P+G R G ++
Sbjct: 63 PDGLEVLQFPNGQTEKHFPDGSKEIHFPDGTVKILNPDGQEESVYPDGTVVRVSRNGDKE 122
Query: 88 RKKPEGRQD--------RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDM 133
+ P G+++ R+ P+G P GRQ+ + GR K +GR M
Sbjct: 123 IEFPNGQREIHTKRYKRREYPDGTVKTVYPNGRQETRYSSGRVRVKDKDGRVIM 176
Score = 25.9 bits (57), Expect = 6.9
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 10 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQD 69
P+G + + P G+ ++ P+G ++ P+G P+G+++ P+G R G ++
Sbjct: 63 PDGLEVLQFPNGQTEKHFPDGSKEIHFPDGTVKILNPDGQEESVYPDGTVVRVSRNGDKE 122
Query: 70 RKKPEGRQD--------RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 112
+ P G+++ R+ P+G P GRQ+ + GR K +GR
Sbjct: 123 IEFPNGQREIHTKRYKRREYPDGTVKTVYPNGRQETRYSSGRVRVKDKDGR 173
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 27.3 bits (60), Expect = 4.0
Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 5 ERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKK--PEGRQDRKKPEGRQDRKKPEGRQDRK 62
+K + + D + + R + +Q K P+ E +Q + + ++
Sbjct: 227 IDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKA 286
Query: 63 KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQ 122
+ E +++ ++ +D K + +Q+ K E + K+ E ++ R+ + KP+
Sbjct: 287 QIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEA 346
Query: 123 DRK 125
Sbjct: 347 QPT 349
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 26.9 bits (60), Expect = 4.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 2 ISDERLEKPEGRQD---RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 53
I DE E+ R + K P+ + +++ + Q RKK + R+ + K ++ RK
Sbjct: 360 IGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 26.4 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 16 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 65
KKP+ Q K P K P+ ++ +KK K G R KP+
Sbjct: 147 VKKPKKGQSPKVP------KAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 26.4 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 25 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 74
KKP+ Q K P K P+ ++ +KK K G R KP+
Sbjct: 147 VKKPKKGQSPKVP------KAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 26.4 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 34 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 83
KKP+ Q K P K P+ ++ +KK K G R KP+
Sbjct: 147 VKKPKKGQSPKVP------KAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 26.4 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 43 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 92
KKP+ Q K P K P+ ++ +KK K G R KP+
Sbjct: 147 VKKPKKGQSPKVP------KAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 26.4 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 52 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 101
KKP+ Q K P K P+ ++ +KK K G R KP+
Sbjct: 147 VKKPKKGQSPKVP------KAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 26.4 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 61 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 110
KKP+ Q K P K P+ ++ +KK K G R KP+
Sbjct: 147 VKKPKKGQSPKVP------KAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 26.4 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 70 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 119
KKP+ Q K P K P+ ++ +KK K G R KP+
Sbjct: 147 VKKPKKGQSPKVP------KAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 26.4 bits (58), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 79 RKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPE 128
KKP+ Q K P K P+ ++ +KK K G R KP+
Sbjct: 147 VKKPKKGQSPKVP------KAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 26.0 bits (57), Expect = 9.4
Identities = 21/131 (16%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 3 SDERLEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK 62
+ E+ E Q +++ + ++++ K E + + K E ++ R E ++++K +
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Query: 63 KPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR--QDRKKPEGRQDRKKPEG 120
+ E +++R + + R + + ++KK +++++ R K E + ++ +
Sbjct: 161 EEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKE 220
Query: 121 RQDRKKPEGRQ 131
D K E
Sbjct: 221 EDDGKDRETTT 231
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 26.0 bits (57), Expect = 9.7
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 12 GRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRK-----KPEG 66
G++ + Q R++ GRQ + P +Q+R ++ + P + +P
Sbjct: 454 GQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRT 513
Query: 67 RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDR 124
Q ++ G+ R P + + +Q + +PE R ++ + G + G Q+R
Sbjct: 514 YQPQRYGGGQGRRWNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRGQGGRGNQNR 571
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.133 0.381
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,437,470
Number of extensions: 668584
Number of successful extensions: 1758
Number of sequences better than 10.0: 1
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 393
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 54 (24.6 bits)