RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5761
         (144 letters)



>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
           tubercidin, structu genomics, structural genomics
           consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
           4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
           3qow_A* 3qox_A* 4er3_A* 3sr4_A*
          Length = 438

 Score = 26.3 bits (57), Expect = 3.8
 Identities = 11/88 (12%), Positives = 31/88 (35%)

Query: 7   LEKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEG 66
               +  + R++ E  + R++ E + +   P    + K              +++     
Sbjct: 344 FSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAAT 403

Query: 67  RQDRKKPEGRQDRKKPEGRQDRKKPEGR 94
            +     + R+ +   +GR+   +  GR
Sbjct: 404 VKKPSPSKARKKKLNKKGRKMAGRKRGR 431



 Score = 25.6 bits (55), Expect = 7.6
 Identities = 11/91 (12%), Positives = 31/91 (34%)

Query: 13  RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 72
                  +  + R++ E  + R++ E + +   P    + K              +++  
Sbjct: 341 ENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAG 400

Query: 73  PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 103
               +     + R+ +   +GR+   +  GR
Sbjct: 401 AATVKKPSPSKARKKKLNKKGRKMAGRKRGR 431



 Score = 25.6 bits (55), Expect = 7.6
 Identities = 11/91 (12%), Positives = 31/91 (34%)

Query: 22  RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 81
                  +  + R++ E  + R++ E + +   P    + K              +++  
Sbjct: 341 ENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAG 400

Query: 82  PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 112
               +     + R+ +   +GR+   +  GR
Sbjct: 401 AATVKKPSPSKARKKKLNKKGRKMAGRKRGR 431



 Score = 25.6 bits (55), Expect = 7.6
 Identities = 11/91 (12%), Positives = 31/91 (34%)

Query: 31  RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 90
                  +  + R++ E  + R++ E + +   P    + K              +++  
Sbjct: 341 ENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAG 400

Query: 91  PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 121
               +     + R+ +   +GR+   +  GR
Sbjct: 401 AATVKKPSPSKARKKKLNKKGRKMAGRKRGR 431



 Score = 25.6 bits (55), Expect = 7.6
 Identities = 11/91 (12%), Positives = 31/91 (34%)

Query: 40  RQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKKPEGRQDRKK 99
                  +  + R++ E  + R++ E + +   P    + K              +++  
Sbjct: 341 ENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAG 400

Query: 100 PEGRQDRKKPEGRQDRKKPEGRQDRKKPEGR 130
               +     + R+ +   +GR+   +  GR
Sbjct: 401 AATVKKPSPSKARKKKLNKKGRKMAGRKRGR 431


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 4.4
 Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 121 RQDRKKPEGRQDMYLFRAEIKPA 143
           +Q  KK +    + L+  +  PA
Sbjct: 19  KQALKKLQAS--LKLYADDSAPA 39


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.307    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,014,019
Number of extensions: 108200
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 91
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 52 (24.4 bits)