BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5765
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O42350|CO1A2_LITCT Collagen alpha-2(I) chain OS=Lithobates catesbeiana GN=COL1A2 PE=2
SV=1
Length = 1355
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 63/159 (39%), Gaps = 6/159 (3%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
GPSG G G GP+G + GP G + G G GP G GP G
Sbjct: 690 AGPSGVAGPRGAPGERGEAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGPLGA 749
Query: 73 LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
GP+G G +G GPSG + GP+GR GP G + GP+G DG
Sbjct: 750 HGSAGPAGPNGPAGSTGARGDAGPSGATGFPGPAGRAGAPGPPGNVGPSGPTGHPGKDGS 809
Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 171
G GP GR G GP G GPSG
Sbjct: 810 RGPRGDSGPVGR------PGEQGQHGPVGLAGDKGPSGE 842
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 3/153 (1%)
Query: 31 LGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGR 90
GPSG G G GP+G + GP G + G G GP G GP G
Sbjct: 690 AGPSGVAGPRGAPGERGEAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGPLGA 749
Query: 91 LRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPS---GRLRY 147
GP+G G +G GPSG + GP+GR + GP G + GP+ G+
Sbjct: 750 HGSAGPAGPNGPAGSTGARGDAGPSGATGFPGPAGRAGAPGPPGNVGPSGPTGHPGKDGS 809
Query: 148 LGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 180
GP G +G G GP G GPSG
Sbjct: 810 RGPRGDSGPVGRPGEQGQHGPVGLAGDKGPSGE 842
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 49/114 (42%)
Query: 76 LGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGR 135
GPSG G G GP+G + GP G + G G GP G S GP G
Sbjct: 690 AGPSGVAGPRGAPGERGEAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGPLGA 749
Query: 136 LRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 189
GP+G G +G GPSG + GP+GR GP G + GP+G
Sbjct: 750 HGSAGPAGPNGPAGSTGARGDAGPSGATGFPGPAGRAGAPGPPGNVGPSGPTGH 803
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 59/146 (40%)
Query: 49 LGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGR 108
GPSG G G GP+G + GP G+ + G G GP G GP G
Sbjct: 690 AGPSGVAGPRGAPGERGEAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGPLGA 749
Query: 109 LRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGP 168
GP+G G +G GPSG + GP+GR GP G + GP+G G
Sbjct: 750 HGSAGPAGPNGPAGSTGARGDAGPSGATGFPGPAGRAGAPGPPGNVGPSGPTGHPGKDGS 809
Query: 169 SGRLRYLGPSGRLRYLGPSGRLRYLG 194
G GP GR G G + G
Sbjct: 810 RGPRGDSGPVGRPGEQGQHGPVGLAG 835
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
GP+G + GP G+ + G G GP G GP G+ GP+G G +G
Sbjct: 707 EAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGPLGAHGSAGPAGPNGPAGSTG 766
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
GPSG+ + GP+GR GP G + GPSG + G G G SG + G
Sbjct: 767 ARGDAGPSGATGFPGPAGRAGAPGPPGNV---GPSGPTGHPGKDGSRGPRGDSGPVGRPG 823
Query: 132 PSGRLRYLGPSGRLRYLGPSGR 153
G+ GP G GPSG
Sbjct: 824 EQGQ---HGPVGLAGDKGPSGE 842
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 75/200 (37%), Gaps = 24/200 (12%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
GPSG G G G +GS G G+ GPSG GP+G GPSG
Sbjct: 327 AGPSGARGLAGDPGIAGGKGDTGSKGEPGSVGQQGPAGPSGEEGKRGPNGEAGSSGPSGN 386
Query: 73 LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR------LRYLGPSGR 126
G G+ GP GR +GP+G GP G G +GR L G G
Sbjct: 387 AGIRGVPGTRGLPGPDGRAGGIGPAGSRGSSGPPGARGPNGDAGRPGEPGLLGARGLPGF 446
Query: 127 LNSDGPSGRLRYLGPS------------------GRLRYLGPSGRLRYLGPSGRLRYLGP 168
S+GP G+ GP G + + GP G G +G GP
Sbjct: 447 SGSNGPQGKEGPAGPQGIEGRSGAAGPAGARGEPGAIGFPGPKGPNGEPGKNGDKGNQGP 506
Query: 169 SGRLRYLGPSGRLRYLGPSG 188
SG GP G GP+G
Sbjct: 507 SGNRGAPGPDGNNGAQGPAG 526
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 61/151 (40%), Gaps = 6/151 (3%)
Query: 25 SGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRY---LGPSGS 81
+GS GP GS+ GP G G G GP GR G G Y GPSG
Sbjct: 891 AGSSGPRGPPGSVGSPGPVGHSGEAGRDGHPGNDGPPGRDGLPGAKGERGYPGNTGPSGL 950
Query: 82 LRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGP 141
GP+G G SG GPSG GPSG GP G G +G G
Sbjct: 951 AGAPGPAGSAGPAGKSGNRGEGGPSGPAGITGPSGPRGPAGPQGVRGDKGEAGERGARGL 1010
Query: 142 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 172
GR + G SG GPSG GPSG +
Sbjct: 1011 DGRKGHNGLSG---LPGPSGTPGETGPSGSV 1038
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 10 ALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGP 69
A + G G GP G GP G+ GP+G G +G+ GPSG + GP
Sbjct: 723 AGHTGAKGDRGAKGPKGEAGSPGPLGAHGSAGPAGPNGPAGSTGARGDAGPSGATGFPGP 782
Query: 70 SGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNS 129
+GR GP G++ GP+G G+ GP G +G G GP G
Sbjct: 783 AGRAGAPGPPGNVGPSGPTGH------PGKDGSRGPRGDSGPVGRPGEQGQHGPVGLAGD 836
Query: 130 DGPSGR 135
GPSG
Sbjct: 837 KGPSGE 842
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 58/147 (39%), Gaps = 9/147 (6%)
Query: 53 GSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 112
GS GPSG GP GP GS+ GP G G G GP GR
Sbjct: 880 GSNGEPGPSGLAGSSGP------RGPPGSVGSPGPVGHSGEAGRDGHPGNDGPPGRDGLP 933
Query: 113 GPSGRLRY---LGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPS 169
G G Y GPSG + GP+G G SG GPSG GPSG GP
Sbjct: 934 GAKGERGYPGNTGPSGLAGAPGPAGSAGPAGKSGNRGEGGPSGPAGITGPSGPRGPAGPQ 993
Query: 170 GRLRYLGPSGRLRYLGPSGRLRYLGLS 196
G G +G G GR + GLS
Sbjct: 994 GVRGDKGEAGERGARGLDGRKGHNGLS 1020
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 79/216 (36%), Gaps = 39/216 (18%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPS---GRLRYLGPSGSLRYLGPSGRLRYLG 68
+ GPSG + GP+G GP G++ GP+ G+ GP G +G G G
Sbjct: 770 DAGPSGATGFPGPAGRAGAPGPPGNVGPSGPTGHPGKDGSRGPRGDSGPVGRPGEQGQHG 829
Query: 69 PSGRLRYLGPSGSLRYL------------------------------GPSGRLRYLGPSG 98
P G GPSG G G GPSG
Sbjct: 830 PVGLAGDKGPSGEAGPAGPPGAAGPSGVLGARGILGLPGTRGERGLPGGPGSNGEPGPSG 889
Query: 99 RLRYLGPSGRLRYLGPSGRLRYLGPSGRL---NSDGPSGRLRYLGPSGRLRY---LGPSG 152
GP G +G G + + G +GR +DGP GR G G Y GPSG
Sbjct: 890 LAGSSGPRGPPGSVGSPGPVGHSGEAGRDGHPGNDGPPGRDGLPGAKGERGYPGNTGPSG 949
Query: 153 RLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
GP+G G SG GPSG GPSG
Sbjct: 950 LAGAPGPAGSAGPAGKSGNRGEGGPSGPAGITGPSG 985
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 70/172 (40%), Gaps = 9/172 (5%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR- 72
GP+G GPSG+ G G+ GP GR +GP+GS GP G G +GR
Sbjct: 373 GPNGEAGSSGPSGNAGIRGVPGTRGLPGPDGRAGGIGPAGSRGSSGPPGARGPNGDAGRP 432
Query: 73 -----LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
L G G GP G+ GP G G +G G G + + GP G
Sbjct: 433 GEPGLLGARGLPGFSGSNGPQGKEGPAGPQGIEGRSGAAGPAGARGEPGAIGFPGPKGPN 492
Query: 128 NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 179
G +G GPSG GP G GP+G G +G GPSG
Sbjct: 493 GEPGKNGDKGNQGPSGNRGAPGPDGNNGAQGPAG---LGGATGEKGEQGPSG 541
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 62/165 (37%), Gaps = 15/165 (9%)
Query: 35 GSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYL 94
GS GPSG GP GP G + GP G G G GP GR
Sbjct: 880 GSNGEPGPSGLAGSSGP------RGPPGSVGSPGPVGHSGEAGRDGHPGNDGPPGRDGLP 933
Query: 95 GPSGRLRY---LGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPS 151
G G Y GPSG GP+G G SG GPSG GPSG GP
Sbjct: 934 GAKGERGYPGNTGPSGLAGAPGPAGSAGPAGKSGNRGEGGPSGPAGITGPSGPRGPAGPQ 993
Query: 152 GRLRYLGPSGRLRYLGPSGRLRYL------GPSGRLRYLGPSGRL 190
G G +G G GR + GPSG GPSG +
Sbjct: 994 GVRGDKGEAGERGARGLDGRKGHNGLSGLPGPSGTPGETGPSGSV 1038
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 55/141 (39%), Gaps = 9/141 (6%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRY---LGPSGRLRYLGPS 70
GP G + GP G G G GP GR G G Y GPSG GP+
Sbjct: 898 GPPGSVGSPGPVGHSGEAGRDGHPGNDGPPGRDGLPGAKGERGYPGNTGPSGLAGAPGPA 957
Query: 71 GRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSD 130
G G SG+ GPSG GPSG GP G G +G G GR +
Sbjct: 958 GSAGPAGKSGNRGEGGPSGPAGITGPSGPRGPAGPQGVRGDKGEAGERGARGLDGRKGHN 1017
Query: 131 G------PSGRLRYLGPSGRL 145
G PSG GPSG +
Sbjct: 1018 GLSGLPGPSGTPGETGPSGSV 1038
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N GP GR G G Y G GPSG GP+GS G SG GPSG
Sbjct: 923 NDGPPGRDGLPGAKGERGYPG------NTGPSGLAGAPGPAGSAGPAGKSGNRGEGGPSG 976
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG------PSGRLRYLGPSG 125
GPSG GP G G +G G GR + G PSG GPSG
Sbjct: 977 PAGITGPSGPRGPAGPQGVRGDKGEAGERGARGLDGRKGHNGLSGLPGPSGTPGETGPSG 1036
Query: 126 RL 127
+
Sbjct: 1037 SV 1038
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 81/221 (36%), Gaps = 42/221 (19%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
+ GP+G G +G+ GPSG+ + GP+GR GP G++ GP+G G
Sbjct: 752 SAGPAGPNGPAGSTGARGDAGPSGATGFPGPAGRAGAPGPPGNVGPSGPTGH------PG 805
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL------------------- 112
+ GP G +G G GP G GPSG
Sbjct: 806 KDGSRGPRGDSGPVGRPGEQGQHGPVGLAGDKGPSGEAGPAGPPGAAGPSGVLGARGILG 865
Query: 113 -----------GPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRY---LG 158
G G GPSG S GP G +G G + + G +GR + G
Sbjct: 866 LPGTRGERGLPGGPGSNGEPGPSGLAGSSGPRGPPGSVGSPGPVGHSGEAGRDGHPGNDG 925
Query: 159 PSGRLRYLGPSGRLRY---LGPSGRLRYLGPSGRLRYLGLS 196
P GR G G Y GPSG GP+G G S
Sbjct: 926 PPGRDGLPGAKGERGYPGNTGPSGLAGAPGPAGSAGPAGKS 966
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11
PE=1 SV=3
Length = 1555
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 110/223 (49%), Gaps = 53/223 (23%)
Query: 19 LRYLGPSGSLRYLGPSGSLRYLGPSGR----LRYLG----PSGSLRYLGPSGR----LRY 66
R+ G G LR+ G G LR+ GP G+ LR+ G P G LR+ GP G+ LR+
Sbjct: 846 FRFEGSPG-LRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRF 904
Query: 67 LGPSGRLRYLGPSGSLRYL---GPSG-RLRYLGPSGR----LRYLGPSGR----LRYLGP 114
P G+ P G LR+ GPSG +R+ GP G+ +R+ GP + +R+ GP
Sbjct: 905 DNPRGQ-----PVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGP 959
Query: 115 SGR----LRYLGPSGRLNSDGPSGRLRYLGPSGR----LRYLGP----SGRLRYLGPS-- 160
G+ LR+ G +L G LR+ GP G+ +R+ GP G +R+ GPS
Sbjct: 960 HGQSVAGLRFEGQHNQL-----GGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVP 1014
Query: 161 -GRLRYLGPSGR--LRYLGPSGRLRYLGPSGRLRYLGLSDGLR 200
G LR GP G+ R+ G LR+ G G+ L DGL
Sbjct: 1015 GGGLRIEGPLGQGGPRFEG-CHALRFDGQPGQPSLLPRFDGLH 1056
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 104/225 (46%), Gaps = 72/225 (32%)
Query: 19 LRYLGPSGS------LRYLGPSG------------------SLRYLGPSGRLRYLGPSGS 54
LR+ GP G LR+ GP G R+ G G LR+ G G
Sbjct: 804 LRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPG-LRFEGSPGG 862
Query: 55 LRYLGPSGRLRYLGPSGRLRYLG----PSGSLRYLGPSGR----LRYLGPSGRLRYLGPS 106
LR+ GP G+ P G LR+ G P G LR+ GP G+ LR+ P G+ P
Sbjct: 863 LRFEGPGGQ-----PVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQ-----PV 912
Query: 107 GRLRYL---GPSG-RLRYLGPSGRLNSDGPSGRLRYLGPSGR----LRYLGPSGR----L 154
G LR+ GPSG +R+ GP G+ P G +R+ GP + +R+ GP G+ L
Sbjct: 913 GGLRFEGGHGPSGAAIRFDGPHGQ-----PGGGIRFEGPLLQQGVGMRFEGPHGQSVAGL 967
Query: 155 RYLGPS----GRLRYLGPSGR----LRYLGP----SGRLRYLGPS 187
R+ G G LR+ GP G+ +R+ GP G +R+ GPS
Sbjct: 968 RFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPS 1012
>sp|P02458|CO2A1_HUMAN Collagen alpha-1(II) chain OS=Homo sapiens GN=COL2A1 PE=1 SV=3
Length = 1487
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 58/175 (33%), Gaps = 18/175 (10%)
Query: 23 GPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
G G + GP+GS G G GP G + GP G G G G G
Sbjct: 801 GEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL--------------- 127
GP G GP G GP G GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920
Query: 128 ---NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 179
DGP G GP GR G G G G GPSG GP G
Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 975
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 50/150 (33%), Gaps = 18/150 (12%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
GP G + GP G+ G G G G GP G GP G GP G
Sbjct: 826 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKG 885
Query: 72 RLRYLGPSGSLRYLGPSGRL------------------RYLGPSGRLRYLGPSGRLRYLG 113
GP G+ + G +GR+ GP G GP GR G
Sbjct: 886 ARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPG 945
Query: 114 PSGRLRYLGPSGRLNSDGPSGRLRYLGPSG 143
G G G DGPSG GP G
Sbjct: 946 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 975
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%)
Query: 86 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRL 145
G G + GP+G G G GP G + GP G G G G G
Sbjct: 801 GEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 146 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
GP G GP G GP G GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 55/150 (36%), Gaps = 3/150 (2%)
Query: 26 GSLRYLGPS---GSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
G+ GP G + GP G G G +GP G G G + GP+GS
Sbjct: 756 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA 815
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPS 142
G G GP G + GP G G G G G + GP G GP
Sbjct: 816 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ 875
Query: 143 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 172
G GP G GP G + G +GR+
Sbjct: 876 GPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 55/175 (31%), Gaps = 18/175 (10%)
Query: 32 GPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRL 91
G G + GP+G G G GP G + GP G G G G G
Sbjct: 801 GEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 92 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRL--------------- 136
GP G GP G GP G GP G G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920
Query: 137 ---RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
GP G GP GR G G G G GPSG GP G
Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 975
>sp|P05539|CO2A1_RAT Collagen alpha-1(II) chain OS=Rattus norvegicus GN=Col2a1 PE=1 SV=2
Length = 1419
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 61/178 (34%), Gaps = 15/178 (8%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
G G + GPSGS G G GP G + GP G+ G G G G
Sbjct: 733 GEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDA 792
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL------ 127
GP G GP G GP G GP G + G +GR+ GP G
Sbjct: 793 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV---GPPGSNGNPGPA 849
Query: 128 ------NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 179
DGP G G GR G G G G GPSG GP G
Sbjct: 850 GPPGPAGKDGPKGARGDTGAPGRAGDPGLQGPAGAPGEKGEPGDDGPSGSDGPPGPQG 907
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 49/150 (32%), Gaps = 18/150 (12%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
GP G + GP G+ G G G G GP G GP G GP G
Sbjct: 758 ETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKG 817
Query: 72 RLRYLGPSGSLRYLGPSGRL------------------RYLGPSGRLRYLGPSGRLRYLG 113
GP G+ + G +GR+ GP G G GR G
Sbjct: 818 ARGAQGPPGATGFPGAAGRVGPPGSNGNPGPAGPPGPAGKDGPKGARGDTGAPGRAGDPG 877
Query: 114 PSGRLRYLGPSGRLNSDGPSGRLRYLGPSG 143
G G G DGPSG GP G
Sbjct: 878 LQGPAGAPGEKGEPGDDGPSGSDGPPGPQG 907
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 38/105 (36%)
Query: 86 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRL 145
G G + GPSG G G GP G + GP G G G G G
Sbjct: 733 GEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDA 792
Query: 146 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
GP G GP G GP G GP G + G +GR+
Sbjct: 793 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 837
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 55/150 (36%), Gaps = 3/150 (2%)
Query: 26 GSLRYLGPS---GSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
G+ GP G + GP G G G +GP G G G + GPSGS
Sbjct: 688 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGST 747
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPS 142
G G GP G + GP G G G G G + GP G GP
Sbjct: 748 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQ 807
Query: 143 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 172
G GP G GP G + G +GR+
Sbjct: 808 GPTGVTGPKGARGAQGPPGATGFPGAAGRV 837
>sp|A0MSJ1|CRA1B_DANRE Collagen alpha-1(XXVII) chain B OS=Danio rerio GN=col27a1b PE=2 SV=1
Length = 1658
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 72/187 (38%), Gaps = 17/187 (9%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N+G G + G G GPSG G G + G SG +G G G G
Sbjct: 974 NIGEQGLIGPRGDPGVDGEAGPSGPDGAKGEQGDVGLEGESGEKGVIGFKGTEGRTGDPG 1033
Query: 72 RLRYLGPSGSLRYLGPSGR------LRYLGPSGRLRYLGPSGRLRYLGPS---GRLRYLG 122
+ GP G +G G+ + G G + LG G ++GP G ++G
Sbjct: 1034 LIGVKGPEGKPGKIGERGKPGEKGSKGHQGQLGEMGALGEQGDTGFIGPKGSRGTTGFMG 1093
Query: 123 PSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLR 182
G++ G G + Y G + GP G L GP G G G++ GP G
Sbjct: 1094 APGKMGQQGEPGLVGYEG------HQGPQGSLGSPGPKGEKGEQGDDGKVE--GPPGPSG 1145
Query: 183 YLGPSGR 189
+GP G
Sbjct: 1146 DIGPVGN 1152
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 64/160 (40%), Gaps = 4/160 (2%)
Query: 39 YLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 98
GPSG G G + G SG +G G G G + GP G+ +G G
Sbjct: 992 EAGPSGPDGAKGEQGDVGLEGESGEKGVIGFKGTEGRTGDPGLIGVKGPEGKPGKIGERG 1051
Query: 99 RLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRY-- 156
+ G G LG G L G +G + G G ++G G++ G G + Y
Sbjct: 1052 KPGEKGSKGHQGQLGEMGALGEQGDTGFIGPKGSRGTTGFMGAPGKMGQQGEPGLVGYEG 1111
Query: 157 -LGPSGRLRYLGPSGRLRYLGPSGRLR-YLGPSGRLRYLG 194
GP G L GP G G G++ GPSG + +G
Sbjct: 1112 HQGPQGSLGSPGPKGEKGEQGDDGKVEGPPGPSGDIGPVG 1151
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 75/195 (38%), Gaps = 8/195 (4%)
Query: 9 KALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLG 68
KA + G G G GS +G G + G G GPSG G G + G
Sbjct: 953 KAGDQGLPGEPGEKGAVGSPGNIGEQGLIGPRGDPGVDGEAGPSGPDGAKGEQGDVGLEG 1012
Query: 69 PSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLN 128
SG +G G+ G G + GP G+ +G G+ G G LG G L
Sbjct: 1013 ESGEKGVIGFKGTEGRTGDPGLIGVKGPEGKPGKIGERGKPGEKGSKGHQGQLGEMGALG 1072
Query: 129 SDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
G +G + G G ++G G++ G G + Y G + GP G L GP G
Sbjct: 1073 EQGDTGFIGPKGSRGTTGFMGAPGKMGQQGEPGLVGYEG------HQGPQGSLGSPGPKG 1126
Query: 189 RLRYLGLSDGLRVSG 203
G D +V G
Sbjct: 1127 EKGEQG--DDGKVEG 1139
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 69/181 (38%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
G G L GP GS LGP G + +G G+ G G G G +G G +
Sbjct: 922 GAKGILGEPGPQGSPGVLGPLGEIGAIGLPGKAGDQGLPGEPGEKGAVGSPGNIGEQGLI 981
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
G G GPSG G G + G SG +G G G G + GP
Sbjct: 982 GPRGDPGVDGEAGPSGPDGAKGEQGDVGLEGESGEKGVIGFKGTEGRTGDPGLIGVKGPE 1041
Query: 134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 193
G+ +G G+ G G LG G L G +G + G G ++G G++
Sbjct: 1042 GKPGKIGERGKPGEKGSKGHQGQLGEMGALGEQGDTGFIGPKGSRGTTGFMGAPGKMGQQ 1101
Query: 194 G 194
G
Sbjct: 1102 G 1102
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 70/185 (37%), Gaps = 3/185 (1%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
+G G GP+G GP+G G G L GP GS LGP G + +G G
Sbjct: 896 QMGKIGETGEAGPTGFTGVQGPTGP---PGAKGILGEPGPQGSPGVLGPLGEIGAIGLPG 952
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
+ G G G G +G G + G G GPSG G G + +G
Sbjct: 953 KAGDQGLPGEPGEKGAVGSPGNIGEQGLIGPRGDPGVDGEAGPSGPDGAKGEQGDVGLEG 1012
Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLR 191
SG +G G G G + GP G+ +G G+ G G LG G L
Sbjct: 1013 ESGEKGVIGFKGTEGRTGDPGLIGVKGPEGKPGKIGERGKPGEKGSKGHQGQLGEMGALG 1072
Query: 192 YLGLS 196
G +
Sbjct: 1073 EQGDT 1077
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 71/182 (39%), Gaps = 6/182 (3%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
+G G + GP G G SG + +G +G GP+G GP+G G G
Sbjct: 873 VGEKGMMGMKGPEGPPGKQGLSGQMGKIGETGEA---GPTGFTGVQGPTGPP---GAKGI 926
Query: 73 LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
L GP GS LGP G + +G G+ G G G G +G G + G
Sbjct: 927 LGEPGPQGSPGVLGPLGEIGAIGLPGKAGDQGLPGEPGEKGAVGSPGNIGEQGLIGPRGD 986
Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 192
G GPSG G G + G SG +G G G G + GP G+
Sbjct: 987 PGVDGEAGPSGPDGAKGEQGDVGLEGESGEKGVIGFKGTEGRTGDPGLIGVKGPEGKPGK 1046
Query: 193 LG 194
+G
Sbjct: 1047 IG 1048
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 68/181 (37%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GP G LGP G + +G G G G G GS +G G + G G
Sbjct: 931 GPQGSPGVLGPLGEIGAIGLPGKAGDQGLPGEPGEKGAVGSPGNIGEQGLIGPRGDPGVD 990
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
GPSG G G + G SG +G G G G + GP G+ G
Sbjct: 991 GEAGPSGPDGAKGEQGDVGLEGESGEKGVIGFKGTEGRTGDPGLIGVKGPEGKPGKIGER 1050
Query: 134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 193
G+ G G LG G L G +G + G G ++G G++ G G + Y
Sbjct: 1051 GKPGEKGSKGHQGQLGEMGALGEQGDTGFIGPKGSRGTTGFMGAPGKMGQQGEPGLVGYE 1110
Query: 194 G 194
G
Sbjct: 1111 G 1111
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 73/184 (39%), Gaps = 3/184 (1%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N G G G +G+ LG G + ++GP G + G G G +G+ G G
Sbjct: 770 NPGEEGMKGEPGMTGNPGMLGERGPVGFVGPFGEMGLAGEKGDR---GETGQPGPPGEKG 826
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
+ + G G GP+G G G GP G GP G + G G +G
Sbjct: 827 AMGHPGAPGERGLSGPAGAPGPHGSRGLSGTRGPKGTRGARGPDGPVGEKGMMGMKGPEG 886
Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLR 191
P G+ G G++ G +G + G G G G L GP G LGP G +
Sbjct: 887 PPGKQGLSGQMGKIGETGEAGPTGFTGVQGPTGPPGAKGILGEPGPQGSPGVLGPLGEIG 946
Query: 192 YLGL 195
+GL
Sbjct: 947 AIGL 950
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 68/173 (39%), Gaps = 9/173 (5%)
Query: 23 GPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
GP G+ GP G + G G + GP G G SG++ +G +G GP+G
Sbjct: 859 GPKGTRGARGPDGPV---GEKGMMGMKGPEGPPGKQGLSGQMGKIGETGEA---GPTGFT 912
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPS 142
GP+G G G L GP G LGP G + +G G+ G G G
Sbjct: 913 GVQGPTGPP---GAKGILGEPGPQGSPGVLGPLGEIGAIGLPGKAGDQGLPGEPGEKGAV 969
Query: 143 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGL 195
G +G G + G G GPSG G G + G SG +G
Sbjct: 970 GSPGNIGEQGLIGPRGDPGVDGEAGPSGPDGAKGEQGDVGLEGESGEKGVIGF 1022
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 66/181 (36%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GP G+ G G + G +G + G G G G L GP G LGP G +
Sbjct: 886 GPPGKQGLSGQMGKIGETGEAGPTGFTGVQGPTGPPGAKGILGEPGPQGSPGVLGPLGEI 945
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
+G G G G G G +G G + G G GPSG + G
Sbjct: 946 GAIGLPGKAGDQGLPGEPGEKGAVGSPGNIGEQGLIGPRGDPGVDGEAGPSGPDGAKGEQ 1005
Query: 134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 193
G + G SG +G G G G + GP G+ +G G+ G G L
Sbjct: 1006 GDVGLEGESGEKGVIGFKGTEGRTGDPGLIGVKGPEGKPGKIGERGKPGEKGSKGHQGQL 1065
Query: 194 G 194
G
Sbjct: 1066 G 1066
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 66/172 (38%), Gaps = 9/172 (5%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GP G GP G + G G + GP G G SG + +G +G GP+G
Sbjct: 859 GPKGTRGARGPDGPV---GEKGMMGMKGPEGPPGKQGLSGQMGKIGETGEA---GPTGFT 912
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
GP+G G G L GP G LGP G + +G G+ G G G
Sbjct: 913 GVQGPTGP---PGAKGILGEPGPQGSPGVLGPLGEIGAIGLPGKAGDQGLPGEPGEKGAV 969
Query: 134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG 185
G +G G + G G GPSG G G + G SG +G
Sbjct: 970 GSPGNIGEQGLIGPRGDPGVDGEAGPSGPDGAKGEQGDVGLEGESGEKGVIG 1021
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 66/185 (35%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N G G + GP G + G G G +G+ G G L G G GP G
Sbjct: 1215 NRGSPGPVGVPGPRGVIGREGFEGEPGLDGAAGKDGAKGMPGDLGRDGDVGLPGKPGPQG 1274
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
G G GP G G SG G +G + + G G + G G G
Sbjct: 1275 NAGAPGLPGVQGSFGPKGERGITGHSGPPGKRGLNGGMGFPGKQGDQGFKGQPGDAGEQG 1334
Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLR 191
G L GP G GP G GP G + G G + +GPSG G G
Sbjct: 1335 FPGVLGIFGPQGPPGDFGPVGIQGPKGPQGLMGMQGAIGPVGIIGPSGNPGPQGDKGNKG 1394
Query: 192 YLGLS 196
+G+
Sbjct: 1395 EMGVQ 1399
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
Query: 59 GPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 118
GP G ++G G + +GP G +GP G G G G G L G G
Sbjct: 613 GPVGIPGFIGDMGPVGMVGPPG---LIGPKG---VPGNPGEPGLKGDKGELGLPGEPGEP 666
Query: 119 RYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPS 178
+ G G S G G GP G++ GP G LGP G +GP G+ GP
Sbjct: 667 GFQGDKGIQGSPGLPGVQGKPGPQGKIGDRGPDGLPGPLGPEGFPGDIGPPGQNGVEGPK 726
Query: 179 GR 180
G
Sbjct: 727 GN 728
>sp|P28481|CO2A1_MOUSE Collagen alpha-1(II) chain OS=Mus musculus GN=Col2a1 PE=1 SV=2
Length = 1487
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 58/175 (33%), Gaps = 18/175 (10%)
Query: 23 GPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
G G + GPSGS G G GP G + GP G G G G G
Sbjct: 801 GEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDA 860
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL--------------- 127
GP G GP G GP G GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGANGNPGPAGPP 920
Query: 128 ---NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 179
DGP G GP GR G G G G GPSG GP G
Sbjct: 921 GPAGKDGPKGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPGDDGPSGLDGPPGPQG 975
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 50/150 (33%), Gaps = 18/150 (12%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
GP G + GP G+ G G G G GP G GP G GP G
Sbjct: 826 ETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKG 885
Query: 72 RLRYLGPSGSLRYLGPSGRL------------------RYLGPSGRLRYLGPSGRLRYLG 113
GP G+ + G +GR+ GP G GP GR G
Sbjct: 886 ARGAQGPPGATGFPGAAGRVGPPGANGNPGPAGPPGPAGKDGPKGVRGDSGPPGRAGDPG 945
Query: 114 PSGRLRYLGPSGRLNSDGPSGRLRYLGPSG 143
G G G DGPSG GP G
Sbjct: 946 LQGPAGAPGEKGEPGDDGPSGLDGPPGPQG 975
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 38/105 (36%)
Query: 86 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRL 145
G G + GPSG G G GP G + GP G G G G G
Sbjct: 801 GEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDA 860
Query: 146 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
GP G GP G GP G GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 55/150 (36%), Gaps = 3/150 (2%)
Query: 26 GSLRYLGPS---GSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
G+ GP G + GP G G G +GP G G G + GPSGS
Sbjct: 756 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGST 815
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPS 142
G G GP G + GP G G G G G + GP G GP
Sbjct: 816 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQ 875
Query: 143 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 172
G GP G GP G + G +GR+
Sbjct: 876 GPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
>sp|P02466|CO1A2_RAT Collagen alpha-2(I) chain OS=Rattus norvegicus GN=Col1a2 PE=1 SV=3
Length = 1372
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 68/174 (39%), Gaps = 6/174 (3%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N+GP+G+ +G G GP G G +G + + GP G G G + G +G
Sbjct: 464 NVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGEKGHPGLAG 523
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
GP G+ GP G G G GP G GPSG + G+ G
Sbjct: 524 ARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTAGEV---GKPGERG 580
Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG 185
G GP+G GP G GPSG + GPSG GP G G
Sbjct: 581 LPGEFGLPGPAGPRGERGPPGESGAAGPSGPIGIRGPSG---APGPDGNKGEAG 631
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 62/160 (38%), Gaps = 6/160 (3%)
Query: 35 GSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYL 94
GS +GP+G+ +G G GP G G +G + + GP G G G +
Sbjct: 460 GSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGEKGHP 519
Query: 95 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGP---- 150
G +G GP G GP G G G GP G GPSG +G
Sbjct: 520 GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTAGEVGKPGER 579
Query: 151 --SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
G GP+G GP G GPSG + GPSG
Sbjct: 580 GLPGEFGLPGPAGPRGERGPPGESGAAGPSGPIGIRGPSG 619
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 72/184 (39%), Gaps = 6/184 (3%)
Query: 17 GRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRY- 75
G GP+G G GS G GR +GP G+ GP+G G +GR
Sbjct: 391 GEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAGVRGPNGDAGRPGEP 450
Query: 76 --LGP---SGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSD 130
+GP GS +GP+G+ +G G GP G G +G + + GP G
Sbjct: 451 GLMGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDP 510
Query: 131 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
G G + G +G GP G GP G G G GP G GPSG
Sbjct: 511 GKPGEKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTA 570
Query: 191 RYLG 194
+G
Sbjct: 571 GEVG 574
Score = 37.0 bits (84), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 79/205 (38%), Gaps = 24/205 (11%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
+G GR G G++ GP+G+ G G GPSG G G +GP+G
Sbjct: 671 EIGNPGRDGARGAPGAIGAPGPAGAS---GDRGEAGAAGPSGPAGPRGSPGERGEVGPAG 727
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
+ GP+GS G G GP G +GP+G + GPSG GP+G G
Sbjct: 728 PNGFAGPAGSAGQPGAKGEKGTKGPKGENGIVGPTGPVGAAGPSGPNGPPGPAGSRGDGG 787
Query: 132 PSGRLRYLGPSGRLRYL---------------------GPSGRLRYLGPSGRLRYLGPSG 170
P G + G +GR GP G +G +G + GP G
Sbjct: 788 PPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGIRGPRGDQGPVGRTGEIGASGPPG 847
Query: 171 RLRYLGPSGRLRYLGPSGRLRYLGL 195
GPSG GP G GL
Sbjct: 848 FAGEKGPSGEPGTTGPPGTAGPQGL 872
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 75/195 (38%), Gaps = 12/195 (6%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRY---LGP---SGSLRYLGPSGRLRYL 67
G GR +GP G+ GP+G G +GR +GP GS +GP+G+ +
Sbjct: 415 GADGRAGVMGPPGNRGSTGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPAGKEGPV 474
Query: 68 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
G G GP G G +G + + GP G G G + G +G GP G
Sbjct: 475 GLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGEKGHPGLAGARGAPGPDGNN 534
Query: 128 NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR------LRYLGPSGRL 181
+ GP G G G GP G GPSG +G G GP+G
Sbjct: 535 GAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTAGEVGKPGERGLPGEFGLPGPAGPR 594
Query: 182 RYLGPSGRLRYLGLS 196
GP G G S
Sbjct: 595 GERGPPGESGAAGPS 609
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 49/132 (37%), Gaps = 6/132 (4%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GP G G G + G +G+ GP G GP G G G GP G
Sbjct: 502 GPKGPSGDPGKPGEKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQ 561
Query: 74 RYLGPSGSLRYLGP------SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
GPSG+ +G G GP+G GP G GPSG + GPSG
Sbjct: 562 GLPGPSGTAGEVGKPGERGLPGEFGLPGPAGPRGERGPPGESGAAGPSGPIGIRGPSGAP 621
Query: 128 NSDGPSGRLRYL 139
DG G +
Sbjct: 622 GPDGNKGEAGAV 633
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 77/190 (40%), Gaps = 6/190 (3%)
Query: 7 VEKALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRY 66
V A GP G + GP+GS G +G+ G +G GPSG G G
Sbjct: 339 VGAAGATGPRGLVGEPGPAGSK---GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGS 395
Query: 67 LGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 126
GP+G G GS G GR +GP G GP+G GP+G G G
Sbjct: 396 AGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG---VRGPNGDAGRPGEPGL 452
Query: 127 LNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGP 186
+ G G +GP+G+ +G G GP G G +G + + GP G G
Sbjct: 453 MGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGK 512
Query: 187 SGRLRYLGLS 196
G + GL+
Sbjct: 513 PGEKGHPGLA 522
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 32 GPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYL------GPSGRLRYLGPSGSLRYL 85
GP G+ GP G + GP+GS G G GPSG G G
Sbjct: 337 GPVGAAGATGPRGLVGEPGPAGSKGETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSA 396
Query: 86 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRY---LGP- 141
GP+G G G G GR +GP G GP+G +G +GR +GP
Sbjct: 397 GPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAGVRGPNGDAGRPGEPGLMGPR 456
Query: 142 --SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
G +GP+G+ +G G GP G G +G + + GP G
Sbjct: 457 GLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKG 505
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 65/166 (39%), Gaps = 3/166 (1%)
Query: 23 GPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
GPSG G G GP+G G GS G GR +GP G GP+G
Sbjct: 379 GPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG-- 436
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPS 142
GP+G G G + G G +GP+G+ +G G GP G G +
Sbjct: 437 -VRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRGEA 495
Query: 143 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
G + + GP G G G + G +G GP G GP G
Sbjct: 496 GNIGFPGPKGPSGDPGKPGEKGHPGLAGARGAPGPDGNNGAQGPPG 541
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 78/214 (36%), Gaps = 39/214 (18%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
GP G GPSG+ +G G R L G GP+G GP G GPSG
Sbjct: 555 AGPPGFQGLPGPSGTAGEVGKPGE-RGL--PGEFGLPGPAGPRGERGPPGESGAAGPSGP 611
Query: 73 LRYLGPSGSLRYLGPSGRLRYL------------------GPSG-----------RLR-Y 102
+ GPSG+ G G + G +G LR
Sbjct: 612 IGIRGPSGAPGPDGNKGEAGAVGAPGSAGASGPGGLPGERGAAGIPGGKGEKGETGLRGE 671
Query: 103 LGPSGRLRYLGPSGRLRYLGPS------GRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRY 156
+G GR G G + GP+ G + GPSG G G +GP+G +
Sbjct: 672 IGNPGRDGARGAPGAIGAPGPAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNGF 731
Query: 157 LGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
GP+G G G GP G +GP+G +
Sbjct: 732 AGPAGSAGQPGAKGEKGTKGPKGENGIVGPTGPV 765
>sp|O46392|CO1A2_CANFA Collagen alpha-2(I) chain OS=Canis familiaris GN=COL1A2 PE=2 SV=2
Length = 1366
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 77/190 (40%), Gaps = 12/190 (6%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GP+G GPSG G GS G G +GP G GP+G G SGR
Sbjct: 382 GPNGEAGSAGPSGPPGLRGSPGSRGLPGADGPAGVMGPPGPRGATGPAGVRGPNGDSGRP 441
Query: 74 RY---LGP---SGSLRYLGPSGRLRYLG-P--SGRLRYLGPSGRLRYLGPSGRLRYLGPS 124
+GP G+ +GP+G+ +G P GR +GP+G G G + + GP
Sbjct: 442 GEPGLMGPRGFPGAPGNVGPAGKEGPMGLPGIDGRPGPIGPAG---ARGEPGNIGFPGPK 498
Query: 125 GRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 184
G G +G + G +G GP G GP G G G GP G
Sbjct: 499 GPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLP 558
Query: 185 GPSGRLRYLG 194
GP+G +G
Sbjct: 559 GPAGTAGEVG 568
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 73/185 (39%), Gaps = 6/185 (3%)
Query: 10 ALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGP 69
A + G SG G +G+ GPSG GP+G GPSG G G G
Sbjct: 351 AGSKGESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGA 410
Query: 70 SGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRY---LGP---SGRLRYLGPSGRLRYLGP 123
G +GP G GP+G G SGR +GP G +GP+G+ +G
Sbjct: 411 DGPAGVMGPPGPRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGAPGNVGPAGKEGPMGL 470
Query: 124 SGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 183
G GP G G G + + GP G G +G + G +G GP G
Sbjct: 471 PGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGA 530
Query: 184 LGPSG 188
GP G
Sbjct: 531 QGPPG 535
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 60/152 (39%), Gaps = 3/152 (1%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N+GP+G+ +G G GP G G G + + GP G G +G + G +G
Sbjct: 458 NVGPAGKEGPMGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAG 517
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
GP G+ GP G G G GP G GP+G +G G G
Sbjct: 518 ARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGER---G 574
Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 163
G GP+G GP G GPSG +
Sbjct: 575 LPGEFGLPGPAGPRGERGPPGESGAAGPSGPI 606
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 69/171 (40%), Gaps = 9/171 (5%)
Query: 32 GPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRL 91
GP+GS G SG G +G+ GPSG GP+G GPSG G G
Sbjct: 349 GPAGSK---GESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSR 405
Query: 92 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPS 151
G G +GP G GP+G G SGR G G + G G + G
Sbjct: 406 GLPGADGPAGVMGPPGPRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGAPGNVGPAGKE 465
Query: 152 GRLRYLGPSGRLRYLGPS------GRLRYLGPSGRLRYLGPSGRLRYLGLS 196
G + G GR +GP+ G + + GP G G +G + GL+
Sbjct: 466 GPMGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLA 516
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 74/198 (37%), Gaps = 21/198 (10%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRY---LGP---SGSLRYLGPSGRLRYL 67
G G +GP G GP+G G SGR +GP G+ +GP+G+ +
Sbjct: 409 GADGPAGVMGPPGPRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGAPGNVGPAGKEGPM 468
Query: 68 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
G G GP G G G + + GP G G +G + G +G GP G
Sbjct: 469 GLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNN 528
Query: 128 NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL---------------GPSGRL 172
+ GP G G G GP G GP+G + GP+G
Sbjct: 529 GAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGLPGEFGLPGPAGPR 588
Query: 173 RYLGPSGRLRYLGPSGRL 190
GP G GPSG +
Sbjct: 589 GERGPPGESGAAGPSGPI 606
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 71/183 (38%), Gaps = 6/183 (3%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
+G G G SG+ G +G+ GPSG GP+G GPSG G G
Sbjct: 345 VGEPGPAGSKGESGNKGEPGSAGAQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGS 404
Query: 73 LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
G G +GP G GP+G G SGR G G + G G + G
Sbjct: 405 RGLPGADGPAGVMGPPGPRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGAPGNVGPAGK 464
Query: 133 SGRLRYLGPSGRLRYLGPS------GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGP 186
G + G GR +GP+ G + + GP G G +G + G +G GP
Sbjct: 465 EGPMGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGP 524
Query: 187 SGR 189
G
Sbjct: 525 DGN 527
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 21/150 (14%)
Query: 12 NLGPSGRLRYLGPSGSLRY---LGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLG 68
N GP GR G G Y +GP G++ GP G + G G+ GP+G +G
Sbjct: 932 NDGPPGRDGQAGHKGERGYPGNIGPVGAVGAPGPHGPVGPTGKHGNRGEPGPAG---SVG 988
Query: 69 PSGRLRYLGPSGSLRYLGPSGRLRYLGP---------------SGRLRYLGPSGRLRYLG 113
P G + GPSG G G GP G G G +G
Sbjct: 989 PVGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGLAGQHGDQGAPGSVG 1048
Query: 114 PSGRLRYLGPSGRLNSDGPSGRLRYLGPSG 143
P+G GPSG DG +G+ +GP+G
Sbjct: 1049 PAGPRGPAGPSGPAGKDGRTGQPGTVGPAG 1078
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 53/151 (35%), Gaps = 15/151 (9%)
Query: 17 GRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYL 76
G + + GP G G +G + G +G GP G+ GP G G G
Sbjct: 490 GNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPA 549
Query: 77 GPSGSLRYLGPSGRLRYLGPSGR------LRYLGPSGRLRYLGPSGRLRYLGPSGRL--- 127
GP G GP+G +G G GP+G GP G GPSG +
Sbjct: 550 GPPGFQGLPGPAGTAGEVGKPGERGLPGEFGLPGPAGPRGERGPPGESGAAGPSGPIGSR 609
Query: 128 ------NSDGPSGRLRYLGPSGRLRYLGPSG 152
DG G LG G GP G
Sbjct: 610 GPSGPPGPDGNKGEPGVLGAPGTAGASGPGG 640
>sp|P02465|CO1A2_BOVIN Collagen alpha-2(I) chain OS=Bos taurus GN=COL1A2 PE=1 SV=2
Length = 1364
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 76/198 (38%), Gaps = 21/198 (10%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRY---LGP---SGSLRYLGPSGRLRYL 67
G GR +GP+GS GP+G G SGR +GP GS +GP+G+ +
Sbjct: 407 GADGRAGVMGPAGSRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPV 466
Query: 68 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
G G GP G G G + + GP G G +G + G +G GP G
Sbjct: 467 GLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAGARGAPGPDGNN 526
Query: 128 NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG---------------PSGRL 172
+ GP G G G GP G GP+G G P+G
Sbjct: 527 GAQGPPGLQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEAGKPGERGIPGEFGLPGPAGAR 586
Query: 173 RYLGPSGRLRYLGPSGRL 190
GP G GP+G +
Sbjct: 587 GERGPPGESGAAGPTGPI 604
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 64/160 (40%), Gaps = 6/160 (3%)
Query: 41 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRY---LGP---SGSLRYLGPSGRLRYL 94
G GR +GP+GS GP+G G SGR +GP GS +GP+G+ +
Sbjct: 407 GADGRAGVMGPAGSRGATGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPV 466
Query: 95 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRL 154
G G GP G G G + + GP G G +G + G +G GP G
Sbjct: 467 GLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAGARGAPGPDGNN 526
Query: 155 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG 194
GP G G G GP G GP+G G
Sbjct: 527 GAQGPPGLQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEAG 566
Score = 37.7 bits (86), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 3/152 (1%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N+GP+G+ +G G GP G G G + + GP G G +G + G +G
Sbjct: 456 NIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAG 515
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
GP G+ GP G G G GP G GP+G G +G+ G
Sbjct: 516 ARGAPGPDGNNGAQGPPGLQGVQGGKGEQGPAGPPGFQGLPGPAG---TAGEAGKPGERG 572
Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 163
G GP+G GP G GP+G +
Sbjct: 573 IPGEFGLPGPAGARGERGPPGESGAAGPTGPI 604
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N GP GR G G Y G +G + G G +GP G G G +GP+G
Sbjct: 930 NDGPPGRDGQPGHKGERGYPGNAGPVGAAGAPGPQGPVGPVGKHGNRGEPGPAGAVGPAG 989
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGP---------------SGRLRYLGPSGRLRYLGPSG 116
+ GPSG G G GP G + G G +GP+G
Sbjct: 990 AVGPRGPSGPQGIRGDKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGAVGPAG 1049
Query: 117 RLRYLGPSGRLNSDGPSGRLRYLGPSG 143
GPSG DG G+ +GP+G
Sbjct: 1050 PRGPAGPSGPAGKDGRIGQPGAVGPAG 1076
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 65/166 (39%), Gaps = 3/166 (1%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GP G G G++ + GP G G +G + G +G+ GP G GP G
Sbjct: 476 GPIGPAGARGEPGNIGFPGPKGPSGDPGKAGEKGHAGLAGARGAPGPDGNNGAQGPPGLQ 535
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
G G GP G GP+G G +G+ G G GP+G GP
Sbjct: 536 GVQGGKGEQGPAGPPGFQGLPGPAG---TAGEAGKPGERGIPGEFGLPGPAGARGERGPP 592
Query: 134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 179
G GP+G + GPSG G G +G G GPSG
Sbjct: 593 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAPGTAGPSGPSG 638
>sp|Q0II24|C1QT9_BOVIN Complement C1q and tumor necrosis factor-related protein 9 OS=Bos
taurus GN=C1QTNF9 PE=2 SV=1
Length = 333
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 61 SGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLR---YLGPSGRLRYLGPSGRLRYLGPSGR 117
+G+ G G + G G GP G+ +GP G G +G G G
Sbjct: 70 TGKKGEPGADGHVEAKGIKGDQGSRGPPGKHGPKGLVGPPGEKGLTGETGPQGQKGEKGD 129
Query: 118 LRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGP 177
+ +GP G S GPSG LGP+G + GP G LGP G GP G G
Sbjct: 130 VGPVGPEGPEGSTGPSGPTGLLGPTGPIGKPGPKGDAGPLGPQGEPGVRGPRGWKGERGE 189
Query: 178 SGRL 181
G++
Sbjct: 190 KGKI 193
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 41 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 100
G G + G G GP G+ GP G +GP G G +G G G +
Sbjct: 77 GADGHVEAKGIKGDQGSRGPPGK---HGPKG---LVGPPGEKGLTGETGPQGQKGEKGDV 130
Query: 101 RYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPS 160
+GP G GPSG LGP+G + GP G LGP G GP G G
Sbjct: 131 GPVGPEGPEGSTGPSGPTGLLGPTGPIGKPGPKGDAGPLGPQGEPGVRGPRGWKGERGEK 190
Query: 161 GRL 163
G++
Sbjct: 191 GKI 193
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 16 SGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRY 75
+G+ G G + G G GP G+ GP G +GP G G +G
Sbjct: 70 TGKKGEPGADGHVEAKGIKGDQGSRGPPGK---HGPKG---LVGPPGEKGLTGETGPQGQ 123
Query: 76 LGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGR 135
G G + +GP G GPSG LGP+G + GP G LGP G GP G
Sbjct: 124 KGEKGDVGPVGPEGPEGSTGPSGPTGLLGPTGPIGKPGPKGDAGPLGPQGEPGVRGPRGW 183
Query: 136 LRYLGPSGRL 145
G G++
Sbjct: 184 KGERGEKGKI 193
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
G G + G G GP G GP G + G G GP G+ G G +
Sbjct: 77 GADGHVEAKGIKGDQGSRGPPGKH---GPKGLVGPPGEKGLTGETGPQGQKGEKGDVGPV 133
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
GP GS GP+G L GP+G + GP G LGP G GP G G
Sbjct: 134 GPEGPEGSTGPSGPTGLL---GPTGPIGKPGPKGDAGPLGPQGEPGVRGPRGWKGERGEK 190
Query: 134 GRL 136
G++
Sbjct: 191 GKI 193
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 70 SGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNS 129
+G+ G G + G G GP G+ GP G + G G GP G+
Sbjct: 70 TGKKGEPGADGHVEAKGIKGDQGSRGPPGKH---GPKGLVGPPGEKGLTGETGPQGQKGE 126
Query: 130 DGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
G G + GP G GP+G L GP+G + GP G LGP G GP G
Sbjct: 127 KGDVGPVGPEGPEGSTGPSGPTGLL---GPTGPIGKPGPKGDAGPLGPQGEPGVRGPRG 182
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 88 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRY 147
+G+ G G + G G GP G+ GP G + G G GP G+
Sbjct: 70 TGKKGEPGADGHVEAKGIKGDQGSRGPPGKH---GPKGLVGPPGEKGLTGETGPQGQK-- 124
Query: 148 LGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG 194
G G + +GP G GPSG LGP+G + GP G LG
Sbjct: 125 -GEKGDVGPVGPEGPEGSTGPSGPTGLLGPTGPIGKPGPKGDAGPLG 170
>sp|P02459|CO2A1_BOVIN Collagen alpha-1(II) chain OS=Bos taurus GN=COL2A1 PE=1 SV=4
Length = 1487
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 41/105 (39%)
Query: 41 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 100
G G + GP+G+ G G GP G + GP G+ G G G G
Sbjct: 801 GEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 101 RYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRL 145
GP G GP G GP G + GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 40/105 (38%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
G G + GP+G+ G G GP G + GP G+ G G G G
Sbjct: 801 GEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 118
GP G GP G GP G GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 39/105 (37%)
Query: 23 GPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
G G + GP+G+ G G GP G + GP G G G G G
Sbjct: 801 GEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
GP G GP G GP G GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 39/105 (37%)
Query: 59 GPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 118
G G + GP+G G G GP G + GP G G G G G
Sbjct: 801 GEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 119 RYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 163
GP G + GP G GP G GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%)
Query: 86 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRL 145
G G + GP+G G G GP G + GP G G G G G
Sbjct: 801 GEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 146 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
GP G GP G GP G GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%)
Query: 77 GPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRL 136
G G + GP+G G G GP G + GP G G G G G
Sbjct: 801 GEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 137 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 181
GP G GP G GP G GP G + G +GR+
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 55/150 (36%), Gaps = 3/150 (2%)
Query: 26 GSLRYLGPS---GSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
G+ GP G + GP G G G +GP G G G + GP+G+
Sbjct: 756 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTA 815
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPS 142
G G GP G + GP G G G G G + GP G GP
Sbjct: 816 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ 875
Query: 143 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 172
G GP G GP G + G +GR+
Sbjct: 876 GPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 31/80 (38%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
GP G + GP G+ G G G G GP G GP G GP G
Sbjct: 826 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKG 885
Query: 72 RLRYLGPSGSLRYLGPSGRL 91
GP G+ + G +GR+
Sbjct: 886 ARGAQGPPGATGFPGAAGRV 905
>sp|Q01149|CO1A2_MOUSE Collagen alpha-2(I) chain OS=Mus musculus GN=Col1a2 PE=2 SV=2
Length = 1372
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 72/184 (39%), Gaps = 6/184 (3%)
Query: 17 GRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRY- 75
G GP+G G GS G GR +GP G+ GP+G G +GR
Sbjct: 391 GEAGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAGIRGPNGDAGRPGEP 450
Query: 76 --LGP---SGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSD 130
+GP GS +GPSG+ +G G GP G G +G + + GP G
Sbjct: 451 GLMGPRGLPGSPGNVGPSGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDP 510
Query: 131 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
G G + G +G GP G GP G G G GP G GPSG
Sbjct: 511 GKPGERGHPGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTT 570
Query: 191 RYLG 194
+G
Sbjct: 571 GEVG 574
Score = 37.7 bits (86), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 67/174 (38%), Gaps = 6/174 (3%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N+GPSG+ +G G GP G G +G + + GP G G G + G +G
Sbjct: 464 NVGPSGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGERGHPGLAG 523
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
GP G+ GP G G G GP G GPSG +G G G
Sbjct: 524 ARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTTGEVGKPGER---G 580
Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG 185
G GP+G G G GPSG + GPSG GP G G
Sbjct: 581 LPGEFGLPGPAGPRGERGTPGESGAAGPSGPIGSRGPSG---APGPDGNKGEAG 631
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 66/164 (40%), Gaps = 6/164 (3%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRY---LGP---SGSLRYLGPSGRLRYL 67
G GR +GP G+ GP+G G +GR +GP GS +GPSG+ +
Sbjct: 415 GADGRAGVMGPPGNRGSTGPAGIRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPSGKEGPV 474
Query: 68 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
G G GP G G +G + + GP G G G + G +G GP G
Sbjct: 475 GLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGERGHPGLAGARGAPGPDGNN 534
Query: 128 NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 171
+ GP G G G GP G GPSG +G G
Sbjct: 535 GAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTTGEVGKPGE 578
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 61/160 (38%), Gaps = 6/160 (3%)
Query: 35 GSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYL 94
GS +GPSG+ +G G GP G G +G + + GP G G G +
Sbjct: 460 GSPGNVGPSGKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGERGHP 519
Query: 95 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGP---- 150
G +G GP G GP G G G GP G GPSG +G
Sbjct: 520 GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTTGEVGKPGER 579
Query: 151 --SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
G GP+G G G GPSG + GPSG
Sbjct: 580 GLPGEFGLPGPAGPRGERGTPGESGAAGPSGPIGSRGPSG 619
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 65/166 (39%), Gaps = 3/166 (1%)
Query: 23 GPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
GPSG G G GP+G G GS G GR +GP G GP+G
Sbjct: 379 GPSGEEGKRGSPGEAGSAGPAGPPGLRGSPGSRGLPGADGRAGVMGPPGNRGSTGPAG-- 436
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPS 142
GP+G G G + G G +GPSG+ +G G GP G G +
Sbjct: 437 -IRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPSGKEGPVGLPGIDGRPGPIGPAGPRGEA 495
Query: 143 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
G + + GP G G G + G +G GP G GP G
Sbjct: 496 GNIGFPGPKGPSGDPGKPGERGHPGLAGARGAPGPDGNNGAQGPPG 541
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 63/157 (40%), Gaps = 6/157 (3%)
Query: 32 GPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRL 91
GP+GS G SG G G+ GPSG G G GP+G G G
Sbjct: 355 GPAGSK---GESGNKGEPGSVGAQGPPGPSGEEGKRGSPGEAGSAGPAGPPGLRGSPGSR 411
Query: 92 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPS 151
G GR +GP G GP+G GP+G G G + G G +GPS
Sbjct: 412 GLPGADGRAGVMGPPGNRGSTGPAG---IRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPS 468
Query: 152 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
G+ +G G GP G G +G + + GP G
Sbjct: 469 GKEGPVGLPGIDGRPGPIGPAGPRGEAGNIGFPGPKG 505
>sp|Q9YIB4|CO1A1_CYNPY Collagen alpha-1(I) chain OS=Cynops pyrrhogaster GN=COL1A1 PE=2
SV=1
Length = 1450
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GPSG GP+G+ G G GP+G GP G+ G G GP G
Sbjct: 771 GPSGPA---GPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDA 824
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 118
GP+G GP+G + GP G GP G + G +GRL
Sbjct: 825 GAPGPAGPTGAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRL 869
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 41 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 100
GPSG GP+G+ G G GP+G GP G+ G G GP G
Sbjct: 771 GPSG---PAGPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDA 824
Query: 101 RYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRY 147
GP+G GP+G + GP G + GP G + G +GRL
Sbjct: 825 GAPGPAGPTGAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRLGP 871
Score = 37.0 bits (84), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 68 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
GPSG GP+G+ G G GP+G GP G G G GP G
Sbjct: 771 GPSG---PAGPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDA 824
Query: 128 NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 174
+ GP+G GP+G + GP G GP G + G +GRL
Sbjct: 825 GAPGPAGPTGAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRLGP 871
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 50 GPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRL 109
GPSG GP+G G G GP+G GP G G G GP G
Sbjct: 771 GPSGPA---GPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDA 824
Query: 110 RYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRL 154
GP+G GP+G + + GP G GP G + G +GRL
Sbjct: 825 GAPGPAGPTGAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRL 869
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 23 GPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
GPSG GP+G+ G G GP+G GP G G G GP G
Sbjct: 771 GPSGPA---GPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDA 824
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNS 129
GP+G GP+G + GP G GP G + G +GRL
Sbjct: 825 GAPGPAGPTGAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRLGP 871
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 21/184 (11%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GP+G GP G+ G G GP G GP+G GP+G + GP G
Sbjct: 795 GPAG---ICGPPGADGQPGAKGESGDAGPKGDAGAPGPAGPTGAPGPAGNVGAPGPKGTR 851
Query: 74 RYLGPSGSLRYLGPSGRLR------------------YLGPSGRLRYLGPSGRLRYLGPS 115
GP G+ + G +GRL G G GP+GR GP+
Sbjct: 852 GAAGPPGATGFPGAAGRLGPPGPSGNAGPPGPPGPGGKEGAKGSRGETGPAGRSGEPGPA 911
Query: 116 GRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 175
G G G SDGP+G GP G G G G G GP+G
Sbjct: 912 GPPGPSGEKGSPGSDGPAGAPGIPGPQGIAGQRGVVGLPGQRGERGFSGLPGPAGEPGKQ 971
Query: 176 GPSG 179
GPSG
Sbjct: 972 GPSG 975
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 86 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRL 145
GPSG GP+G G G GP+G GP G G G GP G
Sbjct: 771 GPSG---PAGPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDA 824
Query: 146 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
GP+G GP+G + GP G GP G + G +GRL
Sbjct: 825 GAPGPAGPTGAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRL 869
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 59 GPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 118
GPSG GP+G G G GP+G GP G G G GP G
Sbjct: 771 GPSG---PAGPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDA 824
Query: 119 RYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 165
GP+G + GP+G + GP G GP G + G +GRL
Sbjct: 825 GAPGPAGPTGAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRLGP 871
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
GP+G G G GP+G GP G G G GP G GP+G
Sbjct: 776 AGPTGARGSPGERGEPGAPGPAG---ICGPPGADGQPGAKGESGDAGPKGDAGAPGPAGP 832
Query: 73 LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 111
GP+G++ GP G GP G + G +GRL
Sbjct: 833 TGAPGPAGNVGAPGPKGTRGAAGPPGATGFPGAAGRLGP 871
>sp|P08123|CO1A2_HUMAN Collagen alpha-2(I) chain OS=Homo sapiens GN=COL1A2 PE=1 SV=7
Length = 1366
Score = 37.0 bits (84), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N+GP G GP G + G G+ GPSG +GP+G++ GPSG G G
Sbjct: 953 NIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSG---PVGPAGAVGPRGPSGPQGIRGDKG 1009
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
GP G G +G L+ L G + G G +GP+G GPSG DG
Sbjct: 1010 EPGEKGPRGLPGLKGHNG-LQGL--PGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDG 1066
Query: 132 PSGRLRYLGPSG 143
+G +GP+G
Sbjct: 1067 RTGHPGTVGPAG 1078
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRY---LGP---SGSLRYLGPSGRLRYL 67
G GR +GP GS GP+G G +GR +GP GS +GP+G+ +
Sbjct: 409 GADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPV 468
Query: 68 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
G G GP G G G + + GP G G +G + G +G GP G
Sbjct: 469 GLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNN 528
Query: 128 NSDGPSG 134
+ GP G
Sbjct: 529 GAQGPPG 535
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 41 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRY---LGP---SGSLRYLGPSGRLRYL 94
G GR +GP GS GP+G G +GR +GP GS +GP+G+ +
Sbjct: 409 GADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPV 468
Query: 95 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRL 154
G G GP G G G + + GP G G +G + G +G GP G
Sbjct: 469 GLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNN 528
Query: 155 RYLGPSG 161
GP G
Sbjct: 529 GAQGPPG 535
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 25 SGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRY---LGPSGRLRYLGPSGRLRYLGPSGS 81
+G+ G G+ GP GR G G Y +GP G GP G + G G+
Sbjct: 918 NGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGN 977
Query: 82 LRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGP 141
GPSG +GP+G + GPSG G G GP G G +G L+ L
Sbjct: 978 RGETGPSG---PVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNG-LQGL-- 1031
Query: 142 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
G + G G +GP+G GPSG G +G +GP+G
Sbjct: 1032 PGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAG 1078
>sp|P02467|CO1A2_CHICK Collagen alpha-2(I) chain (Fragments) OS=Gallus gallus GN=COL1A2
PE=1 SV=2
Length = 1362
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 84 YLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRL---RYLG 140
G +G LG SG GPSG + GP+G G G +DGP GR + G
Sbjct: 885 IAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKG 944
Query: 141 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGLS 196
G GPSG L GP G+ +GPSG+ G G + +GP+G GL+
Sbjct: 945 ERGAPGNPGPSGALGAPGPHGQ---VGPSGKPGNRGDPGPVGPVGPAGAFGPRGLA 997
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLR---YLGP 69
G +G LG SG GPSG + GP+G G G+ GP GR + G
Sbjct: 886 AGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGE 945
Query: 70 SGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNS 129
G GPSG+L GP G+ +GPSG+ G G + +GP+G GP G
Sbjct: 946 RGAPGNPGPSGALGAPGPHGQ---VGPSGKPGNRGDPGPVGPVGPAG---AFGPRGLAGP 999
Query: 130 DGPSGRLRYLGPSGR 144
GP G G G
Sbjct: 1000 QGPRGEKGEPGDKGH 1014
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 48 YLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSG 107
G +G LG SG GPSG + GP+G+ G G GP GR G
Sbjct: 885 IAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGR------DG 938
Query: 108 RLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG 167
+ G G GPSG L + GP G+ +GPSG+ G G + +GP+G G
Sbjct: 939 APGFKGERGAPGNPGPSGALGAPGPHGQ---VGPSGKPGNRGDPGPVGPVGPAG---AFG 992
Query: 168 PSGRLRYLGPSGRLRYLGPSGR 189
P G GP G G G
Sbjct: 993 PRGLAGPQGPRGEKGEPGDKGH 1014
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 39 YLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLR---YLG 95
G +G LG SG GPSG + GP+G G G+ GP GR + G
Sbjct: 885 IAGATGEPGPLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKG 944
Query: 96 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLR 155
G GPSG L GP G+ +GPSG+ + G G + +GP+G GP G
Sbjct: 945 ERGAPGNPGPSGALGAPGPHGQ---VGPSGKPGNRGDPGPVGPVGPAG---AFGPRGLAG 998
Query: 156 YLGPSGRLRYLGPSGR 171
GP G G G
Sbjct: 999 PQGPRGEKGEPGDKGH 1014
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%)
Query: 68 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
GP G + GP G+ G G GP G G G + GP G + GP+G
Sbjct: 716 GPVGPSGFAGPPGAAGQPGAKGERGPKGPKGETGPTGAIGPIGASGPPGPVGAAGPAGPR 775
Query: 128 NSDGPSGRLRYLGPSGRL 145
GP G + G +GR+
Sbjct: 776 GDAGPPGMTGFPGAAGRV 793
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 32/78 (41%)
Query: 104 GPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 163
GP G + GP G G G GP G G G + GP G + GP+G
Sbjct: 716 GPVGPSGFAGPPGAAGQPGAKGERGPKGPKGETGPTGAIGPIGASGPPGPVGAAGPAGPR 775
Query: 164 RYLGPSGRLRYLGPSGRL 181
GP G + G +GR+
Sbjct: 776 GDAGPPGMTGFPGAAGRV 793
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 3/106 (2%)
Query: 66 YLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 125
+ G GR+ +GP+G+ G G + + GP G G G +G +G GP G
Sbjct: 468 FPGADGRVGPIGPAGNR---GEPGNIGFPGPKGPTGEPGKPGEKGNVGLAGPRGAPGPEG 524
Query: 126 RLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 171
+ GP G G G GP G GPSG G G
Sbjct: 525 NNGAQGPPGVTGNQGAKGETGPAGPPGFQGLPGPSGPAGEAGKPGE 570
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 52/137 (37%), Gaps = 3/137 (2%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
G GR+ +GP+G+ G G++ + GP G G G +G +G GP G
Sbjct: 470 GADGRVGPIGPAGNR---GEPGNIGFPGPKGPTGEPGKPGEKGNVGLAGPRGAPGPEGNN 526
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
GP G G G GP G GPSG G G G G GP
Sbjct: 527 GAQGPPGVTGNQGAKGETGPAGPPGFQGLPGPSGPAGEAGKPGERGLHGEFGVPGPAGPR 586
Query: 134 GRLRYLGPSGRLRYLGP 150
G G SG + GP
Sbjct: 587 GERGLPGESGAVGPAGP 603
>sp|Q6P4Z2|CO2A1_XENTR Collagen alpha-1(II) chain OS=Xenopus tropicalis GN=col2a1 PE=2
SV=1
Length = 1492
Score = 37.0 bits (84), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 53/138 (38%)
Query: 59 GPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 118
GP+G + G G GP G + GP G G G G G GP G
Sbjct: 815 GPAGIVGARGAPGDRGETGPPGPAGFAGPPGADGQAGLKGDQGESGQKGDAGAPGPQGPS 874
Query: 119 RYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPS 178
GP G +GP G GP G + G +GR+ GP+G G G GP
Sbjct: 875 GAPGPQGPTGVNGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPSGAPGSAGKEGPK 934
Query: 179 GRLRYLGPSGRLRYLGLS 196
G GP+GR GL
Sbjct: 935 GARGDAGPTGRAGDPGLQ 952
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 52/136 (38%), Gaps = 3/136 (2%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
GP G + GP G+ G G G G GP G GP G GP G
Sbjct: 831 ETGPPGPAGFAGPPGADGQAGLKGDQGESGQKGDAGAPGPQGPSGAPGPQGPTGVNGPKG 890
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNS-- 129
GP G+ + G +GR+ GP+G G G GP G GP+GR
Sbjct: 891 ARGAQGPPGATGFPGAAGRVGPPGPNGNPGPSGAPGSAGKEGPKGARGDAGPTGRAGDPG 950
Query: 130 -DGPSGRLRYLGPSGR 144
GP+G G SG
Sbjct: 951 LQGPAGVPGEKGESGE 966
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 57/152 (37%), Gaps = 3/152 (1%)
Query: 32 GPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRL 91
GP+G + G G GP G + GP G G G G G GP G
Sbjct: 815 GPAGIVGARGAPGDRGETGPPGPAGFAGPPGADGQAGLKGDQGESGQKGDAGAPGPQGPS 874
Query: 92 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPS 151
GP G GP G GP G + G +GR+ GP+G G G GP
Sbjct: 875 GAPGPQGPTGVNGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPSGAPGSAGKEGPK 934
Query: 152 GRLRYLGPSGRLRY---LGPSGRLRYLGPSGR 180
G GP+GR GP+G G SG
Sbjct: 935 GARGDAGPTGRAGDPGLQGPAGVPGEKGESGE 966
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 52/136 (38%), Gaps = 3/136 (2%)
Query: 21 YLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSG 80
GP G + GP G+ G G G G GP G GP G GP G
Sbjct: 831 ETGPPGPAGFAGPPGADGQAGLKGDQGESGQKGDAGAPGPQGPSGAPGPQGPTGVNGPKG 890
Query: 81 SLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRY-- 138
+ GP G + G +GR+ GP+G G G GP G GP+GR
Sbjct: 891 ARGAQGPPGATGFPGAAGRVGPPGPNGNPGPSGAPGSAGKEGPKGARGDAGPTGRAGDPG 950
Query: 139 -LGPSGRLRYLGPSGR 153
GP+G G SG
Sbjct: 951 LQGPAGVPGEKGESGE 966
>sp|P85154|CO1A2_MAMAE Collagen alpha-2(I) chain OS=Mammut americanum PE=1 SV=3
Length = 1040
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 74/196 (37%), Gaps = 21/196 (10%)
Query: 16 SGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRY---LGP---SGSLRYLGPSGRLRYLGP 69
GR +GP GS GP+G G SGR +GP GS +GP+G+ G
Sbjct: 332 DGRAGVMGPPGSRGASGPAGVRGPSGDSGRPGEPGVMGPRGLPGSPGNVGPAGKEGPAGL 391
Query: 70 SGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNS 129
G GP G G G + + GP G G +G + G +G GP G +
Sbjct: 392 PGIDGRPGPIGPAGARGEPGNIGFPGPKGPAGDPGKNGDKGHAGLAGPRGAPGPDGNNGA 451
Query: 130 DGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL---------------GPSGRLRY 174
GP G G G GP G GPSG GP+G
Sbjct: 452 QGPPGLQGVQGGKGEQGPAGPPGFQGLPGPSGTAGEAGKPGERGIPGEFGLPGPAGPRGE 511
Query: 175 LGPSGRLRYLGPSGRL 190
GP G+ GP+G +
Sbjct: 512 RGPPGQSGAAGPTGPI 527
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 61/152 (40%), Gaps = 3/152 (1%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N+GP+G+ G G GP G G G + + GP G G +G + G +G
Sbjct: 379 NVGPAGKEGPAGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPAGDPGKNGDKGHAGLAG 438
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
GP G+ GP G G G GP G GPSG G +G+ G
Sbjct: 439 PRGAPGPDGNNGAQGPPGLQGVQGGKGEQGPAGPPGFQGLPGPSG---TAGEAGKPGERG 495
Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 163
G GP+G GP G+ GP+G +
Sbjct: 496 IPGEFGLPGPAGPRGERGPPGQSGAAGPTGPI 527
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N GP G GP G L G G+ GP+G +GP G++ GPSG G G
Sbjct: 874 NAGPVGTAGAPGPQGPLGPAGKHGNRGEPGPAG---SVGPVGAVGPRGPSGPQGARGDKG 930
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
GP G + G +G L+ L G G G +GP+G GPSG + DG
Sbjct: 931 EAGDKGPRGLPGFKGHNG-LQGL--PGLAGQHGDQGSPGSVGPAGPRGPAGPSGPVGKDG 987
Query: 132 PSGRLRYLGPSG 143
G +GP+G
Sbjct: 988 RPGHAGAVGPAG 999
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 65/161 (40%), Gaps = 12/161 (7%)
Query: 43 SGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRY---LGP---SGSLRYLGPSGRLRYLG- 95
GR +GP GS GP+G G SGR +GP GS +GP+G+ G
Sbjct: 332 DGRAGVMGPPGSRGASGPAGVRGPSGDSGRPGEPGVMGPRGLPGSPGNVGPAGKEGPAGL 391
Query: 96 P--SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGR 153
P GR +GP+G G G + + GP G G +G + G +G GP G
Sbjct: 392 PGIDGRPGPIGPAG---ARGEPGNIGFPGPKGPAGDPGKNGDKGHAGLAGPRGAPGPDGN 448
Query: 154 LRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG 194
GP G G G GP G GPSG G
Sbjct: 449 NGAQGPPGLQGVQGGKGEQGPAGPPGFQGLPGPSGTAGEAG 489
>sp|Q17RW2|COOA1_HUMAN Collagen alpha-1(XXIV) chain OS=Homo sapiens GN=COL24A1 PE=2 SV=2
Length = 1714
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 3/169 (1%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
++GP G + GP G+ G G G G +G +G G G G G
Sbjct: 1000 DVGPPGEMGMEGPPGTEGESGLQGEPGAKGDVGTAGSVGGTGEPGLRGEPGAPGEEGLQG 1059
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
+ G G G G +G G + LG SG+ GP G + G GR G
Sbjct: 1060 KDGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKG 1119
Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 180
G+ +GP+G + GP G++ GP G G G L +GP G
Sbjct: 1120 DKGQ---IGPTGEVGSRGPPGKIGKSGPKGARGTRGAVGHLGLMGPDGE 1165
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 68 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
G G +G G + LG SG+ GP G + G GR G G++ GP+G +
Sbjct: 1074 GEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQI---GPTGEV 1130
Query: 128 NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPS 187
S GP G++ GP G G G L +GP G G G GPSG GP
Sbjct: 1131 GSRGPPGKIGKSGPKGARGTRGAVGHLGLMGPDGEPGIPGYRGHQGQPGPSG---LPGPK 1187
Query: 188 GRLRYLG 194
G Y G
Sbjct: 1188 GEKGYPG 1194
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 50 GPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRL 109
G G +G G + LG SG+ GP G + G GR G G+ +GP+G +
Sbjct: 1074 GEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQ---IGPTGEV 1130
Query: 110 RYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPS 169
GP G++ GP G + G G L +GP G G G GPSG GP
Sbjct: 1131 GSRGPPGKIGKSGPKGARGTRGAVGHLGLMGPDGEPGIPGYRGHQGQPGPSG---LPGPK 1187
Query: 170 GRLRYLG 176
G Y G
Sbjct: 1188 GEKGYPG 1194
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 66/168 (39%), Gaps = 3/168 (1%)
Query: 22 LGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGS 81
+GP G + GP G+ G G G G+ +G +G G G G G
Sbjct: 1001 VGPPGEMGMEGPPGTEGESGLQGEPGAKGDVGTAGSVGGTGEPGLRGEPGAPGEEGLQGK 1060
Query: 82 LRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGP 141
G G G G +G G + LG SG+ GP G + G GR G
Sbjct: 1061 DGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGD 1120
Query: 142 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 189
G+ +GP+G + GP G++ GP G G G L +GP G
Sbjct: 1121 KGQ---IGPTGEVGSRGPPGKIGKSGPKGARGTRGAVGHLGLMGPDGE 1165
>sp|O93484|CO1A2_ONCMY Collagen alpha-2(I) chain OS=Oncorhynchus mykiss GN=col1a2 PE=2
SV=2
Length = 1356
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 84/200 (42%), Gaps = 33/200 (16%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
G G GP+G GPSG GP+G + GP GS GP G GP+G
Sbjct: 685 GEKGESGSFGPAGPAGLRGPSGERGEGGPAGLPGFAGPPGSDGQSGPRGEK---GPAGGK 741
Query: 74 RYLGPSGSLRYLGPSGRLR---------------YLGPSGRLRYLGPSGRLRYLGPSGRL 118
+GP+G GPSG+ GPSG + G +GR+ GP+G
Sbjct: 742 GDVGPAGPA---GPSGQSGPSGASGPAGPPGGRGDAGPSGLTGFPGAAGRVGGPGPAGIA 798
Query: 119 RYLGPSGRLNSDGPSG---RLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 175
G +G DGP G GP G +GP+G GPSG GP G
Sbjct: 799 GPPGSAGPAGKDGPRGLRGDPGPGGPQGEQGVVGPAGISGDKGPSGE---SGPPGAPGTA 855
Query: 176 GPSGRLRYLGPSGRLRYLGL 195
GP G LGPSG ++GL
Sbjct: 856 GPQG---VLGPSG---FVGL 869
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
Query: 20 RYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPS 79
+GP+G GPSG GP G GP G LGPSG + G G G
Sbjct: 829 GVVGPAGISGDKGPSGE---SGPPGAPGTAGPQG---VLGPSGFVGLPGSRGDKGLPGGP 882
Query: 80 GSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYL 139
G++ G LGP+G GP+G + G +G G G +DGP GR
Sbjct: 883 GAV------GEPGRLGPAGASGPRGPAGNIGMPGMTGTQGEAGREGNSGNDGPPGRPGAA 936
Query: 140 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
G G G G L G G G +GR G SG GP G +
Sbjct: 937 GFKGDRGEPGSPGALGSSGQPGPNGPAGSAGRPGNRGESGPTGNGGPVGAV 987
>sp|P12114|SQT1_CAEEL Cuticle collagen sqt-1 OS=Caenorhabditis elegans GN=sqt-1 PE=3 SV=2
Length = 324
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 31 LGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLG---- 86
+GP G+L GP G G +G+ G G G SG++ +G G G
Sbjct: 174 VGPPGALGRPGPRGLPGPRGQNGNPGRDGQPGHPGEQGSSGQIGKIGEPGPPGEKGRDAE 233
Query: 87 -PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRL 145
P GR GP G GP+G+ GP G +GP +GPSG+ GP G
Sbjct: 234 HPIGRPGPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGP------EGPSGKQGRQGPDGTQ 287
Query: 146 RYLGPSGR 153
GP GR
Sbjct: 288 GETGPDGR 295
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 40 LGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 99
+GP G L GP G GP G+ G G+ + G GS +G G G GR
Sbjct: 174 VGPPGALGRPGPRG---LPGPRGQNGNPGRDGQPGHPGEQGSSGQIGKIGEPGPPGEKGR 230
Query: 100 LRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGP 159
P GR GP G GP+G+ GP G +GP GPSG+ GP
Sbjct: 231 DAEH-PIGRPGPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPE------GPSGKQGRQGP 283
Query: 160 SGRLRYLGPSGR 171
G GP GR
Sbjct: 284 DGTQGETGPDGR 295
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 58 LGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 117
+GP G L GP G G +G+ G G G SG++ G++ GP G
Sbjct: 174 VGPPGALGRPGPRGLPGPRGQNGNPGRDGQPGHPGEQGSSGQI------GKIGEPGPPGE 227
Query: 118 L--RYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 175
P GR GP G GP+G+ GP G +GP GPSG+
Sbjct: 228 KGRDAEHPIGRPGPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPE------GPSGKQGRQ 281
Query: 176 GPSGRLRYLGPSGR 189
GP G GP GR
Sbjct: 282 GPDGTQGETGPDGR 295
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 52/132 (39%), Gaps = 10/132 (7%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
+GP G L GP G GP G G G+ + G GS +G G G GR
Sbjct: 174 VGPPGALGRPGPRG---LPGPRGQNGNPGRDGQPGHPGEQGSSGQIGKIGEPGPPGEKGR 230
Query: 73 LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
P G GP G GP+G+ GP G +GP GPSG+ GP
Sbjct: 231 DAEH-PIGRPGPKGPRGDQGPTGPAGQNGLHGPPGEPGTVGPE------GPSGKQGRQGP 283
Query: 133 SGRLRYLGPSGR 144
G GP GR
Sbjct: 284 DGTQGETGPDGR 295
>sp|P35248|SFTPD_RAT Pulmonary surfactant-associated protein D OS=Rattus norvegicus
GN=Sftpd PE=1 SV=1
Length = 374
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 50 GPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRL 109
GP G + G +G GP G +GP GS GP+G+ GPSG+ +GP G+
Sbjct: 78 GPRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGKE---GPSGKQGNIGPQGK- 133
Query: 110 RYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSG 143
GP G GP G + + G G GP+G
Sbjct: 134 --PGPKGE---AGPKGEVGAPGMQGSAGAKGPAG 162
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 23 GPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSL 82
GP G + G +GS GP G +GP GS GP+G+ GPSG+ +GP G
Sbjct: 78 GPRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGK---EGPSGKQGNIGPQGK- 133
Query: 83 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 116
GP G GP G + G G GP+G
Sbjct: 134 --PGPKGE---AGPKGEVGAPGMQGSAGAKGPAG 162
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 41 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 100
GP G + G +GS GP G +GP G GP+G GPSG+ +GP G+
Sbjct: 78 GPRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGKE---GPSGKQGNIGPQGK- 133
Query: 101 RYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSG 134
GP G GP G + G G + GP+G
Sbjct: 134 --PGPKGE---AGPKGEVGAPGMQGSAGAKGPAG 162
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 68 GPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 127
GP G + G +GS GP G +GP G GP+G+ GPSG+ +GP G+
Sbjct: 78 GPRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGKE---GPSGKQGNIGPQGK- 133
Query: 128 NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 161
GP G GP G + G G GP+G
Sbjct: 134 --PGPKGE---AGPKGEVGAPGMQGSAGAKGPAG 162
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 86 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRL 145
GP G + G +G GP G +GP G GP+G+ +GPSG+ +GP G+
Sbjct: 78 GPRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGK---EGPSGKQGNIGPQGK- 133
Query: 146 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 179
GP G GP G + G G GP+G
Sbjct: 134 --PGPKGE---AGPKGEVGAPGMQGSAGAKGPAG 162
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GP G + G +GS GP G +GP G GP+G GPSG+ +GP G+
Sbjct: 78 GPRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGK---EGPSGKQGNIGPQGK- 133
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSG 107
GP G GP G + G G GP+G
Sbjct: 134 --PGPKGE---AGPKGEVGAPGMQGSAGAKGPAG 162
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 95 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRL 154
GP G + G +G GP G +GP G GP+G+ GPSG+ +GP G+
Sbjct: 78 GPRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGKE---GPSGKQGNIGPQGK- 133
Query: 155 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
GP G GP G + G G GP+G
Sbjct: 134 --PGPKGE---AGPKGEVGAPGMQGSAGAKGPAG 162
>sp|Q91717|CO2A1_XENLA Collagen alpha-1(II) chain OS=Xenopus laevis GN=col2a1 PE=2 SV=2
Length = 1486
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 38/96 (39%)
Query: 50 GPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRL 109
GP G + G G GP G + GP G+ G G G G GP G
Sbjct: 812 GPPGIVGARGAPGDRGENGPPGPAGFAGPPGADGQSGLKGDQGESGQKGDAGAPGPQGPS 871
Query: 110 RYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRL 145
GP G GP G + GP+G + G +GR+
Sbjct: 872 GAPGPQGPTGVFGPKGARGAQGPAGATGFPGAAGRV 907
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 51/132 (38%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
GP G + G G GP G + GP G G G G G GP G
Sbjct: 812 GPPGIVGARGAPGDRGENGPPGPAGFAGPPGADGQSGLKGDQGESGQKGDAGAPGPQGPS 871
Query: 74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
GP G GP G GP+G + G +GR+ GP+G GP G +GP
Sbjct: 872 GAPGPQGPTGVFGPKGARGAQGPAGATGFPGAAGRVGTPGPNGNPGPPGPPGSAGKEGPK 931
Query: 134 GRLRYLGPSGRL 145
G GP GR
Sbjct: 932 GVRGDAGPPGRA 943
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 37/96 (38%)
Query: 77 GPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRL 136
GP G + G G GP G + GP G G G G G + GP G
Sbjct: 812 GPPGIVGARGAPGDRGENGPPGPAGFAGPPGADGQSGLKGDQGESGQKGDAGAPGPQGPS 871
Query: 137 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 172
GP G GP G GP+G + G +GR+
Sbjct: 872 GAPGPQGPTGVFGPKGARGAQGPAGATGFPGAAGRV 907
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 36/96 (37%)
Query: 95 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRL 154
GP G + G G GP G + GP G G G G G GP G
Sbjct: 812 GPPGIVGARGAPGDRGENGPPGPAGFAGPPGADGQSGLKGDQGESGQKGDAGAPGPQGPS 871
Query: 155 RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
GP G GP G GP+G + G +GR+
Sbjct: 872 GAPGPQGPTGVFGPKGARGAQGPAGATGFPGAAGRV 907
>sp|Q3U962|CO5A2_MOUSE Collagen alpha-2(V) chain OS=Mus musculus GN=Col5a2 PE=1 SV=1
Length = 1497
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 67/183 (36%), Gaps = 3/183 (1%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
GP G G G + G +G GP G +GP G GP G +GP G
Sbjct: 456 TGPQGIRGQSGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGP 515
Query: 73 LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
+ G G+ + G G GP G GP G G G G G + G
Sbjct: 516 MGERGAPGNRGFPGSDG---LPGPKGAQGERGPVGSSGPKGGQGDPGRPGEPGLPGARGL 572
Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 192
+G GP G+L LG G GP G + G G + GP G LG G
Sbjct: 573 TGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDLGKPGEAGN 632
Query: 193 LGL 195
G+
Sbjct: 633 AGV 635
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGP---SGRLRYLGPSGSLRYLGPSGRLRYLGPS 70
GP G + G G GP G++ LGP G LGP G+ G G GP
Sbjct: 307 GPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGKRGAHGMPGKPGPM 366
Query: 71 GRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSD 130
G L G SG + G G GP+G GP G+ GP G G G + +D
Sbjct: 367 GPLGIPGSSG---FPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAVGTD 423
Query: 131 G 131
G
Sbjct: 424 G 424
>sp|Q14055|CO9A2_HUMAN Collagen alpha-2(IX) chain OS=Homo sapiens GN=COL9A2 PE=1 SV=2
Length = 689
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 59/160 (36%), Gaps = 6/160 (3%)
Query: 21 YLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSG 80
Y G G++ GP G GP GR G GS GP G GP G GP G
Sbjct: 251 YKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQG---ITGPKG---ATGPPG 304
Query: 81 SLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLG 140
G G G +G+ G G G G+ G G GP G + G
Sbjct: 305 INGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSG 364
Query: 141 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 180
P G+ GP G + G G+ G G + GP GR
Sbjct: 365 PPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGR 404
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 63/172 (36%), Gaps = 6/172 (3%)
Query: 21 YLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGP-- 78
Y G +G GP G Y G G + GP G GP GR G G GP
Sbjct: 236 YPGMAGPKGETGPHG---YKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQG 292
Query: 79 -SGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLR 137
+G GP G G G G +G+ G G G G+ + G G
Sbjct: 293 ITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQG 352
Query: 138 YLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 189
GP G + GP G+ GP G + G G+ G G + GP GR
Sbjct: 353 EPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGR 404
>sp|Q4ZJM7|OTOL1_MOUSE Otolin-1 OS=Mus musculus GN=Otol1 PE=1 SV=2
Length = 482
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 52/143 (36%)
Query: 21 YLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSG 80
Y G G LGP G +GP+G G G L G G G SG ++G G
Sbjct: 176 YPGKPGEQGALGPKGDKGTIGPAGTKGQKGSKGELCGNGTKGEKGDPGASGAHGFIGEPG 235
Query: 81 SLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLG 140
+ G G Y G G G G G G +G G+ SDG G G
Sbjct: 236 AKGEKGGVGEKGYRGDLGERGEKGQKGEKGMEGEKGSRGDVGSEGKRGSDGLPGLRGDSG 295
Query: 141 PSGRLRYLGPSGRLRYLGPSGRL 163
P G +G G GP G L
Sbjct: 296 PKGEKGEIGSPGFTGPAGPKGEL 318
>sp|Q28668|CO1A2_RABIT Collagen alpha-2(I) chain (Fragment) OS=Oryctolagus cuniculus
GN=COL1A2 PE=2 SV=1
Length = 526
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 12 NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
N GP G GP GS+ G G+ GP+G +GP G+ GPSG G G
Sbjct: 113 NAGPVGAAGAPGPQGSVGPTGKHGNRGEPGPAGS---IGPVGAAGPRGPSGPQGIRGDKG 169
Query: 72 RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
GP G G +G G +G+ G G +GP+G GP+G DG
Sbjct: 170 EPGDKGPRGLPGIKGHNGLQGLPGLAGQ---HGDQGAPGAVGPAGPRGPAGPTGPAGKDG 226
Query: 132 PSGRLRYLGPSG 143
SG +GP+G
Sbjct: 227 RSGHPGTVGPAG 238
>sp|Q5QNQ9|CORA1_MOUSE Collagen alpha-1(XXVII) chain OS=Mus musculus GN=Col27a1 PE=2 SV=1
Length = 1845
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 69/166 (41%), Gaps = 15/166 (9%)
Query: 23 GPSGSLRYLGPSGSLRYLGPSGR-----LRYL-GPSGSLRYLGPSGRLRYLGPSGR---- 72
GP GS GP G GPSGR L+ L GP G + GP G G GR
Sbjct: 1379 GPKGSKGEEGPKGKPGKAGPSGRRGTQGLQGLPGPRGVVGRQGPEGTAGSDGIPGRDGRP 1438
Query: 73 --LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSD 130
G G +GP+GR G +G GP G + G SG LGP G+ ++
Sbjct: 1439 GYQGDQGNDGDPGPVGPAGRRGNPGVAGLPGAQGPPG---FKGESGLPGQLGPPGKRGTE 1495
Query: 131 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG 176
G +G G G G SG + + G +G GP G + + G
Sbjct: 1496 GGTGLPGNQGEPGSKGQPGDSGEMGFPGVAGLFGPKGPPGDIGFKG 1541
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 59 GPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 118
G G+ + GP GR GP GS GP G+ GPSGR G G GP G +
Sbjct: 1364 GQQGQPGHPGPRGRP---GPKGSKGEEGPKGKPGKAGPSGR---RGTQGLQGLPGPRGVV 1417
Query: 119 RYLGPSGRLNSDGPSGR------LRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 172
GP G SDG GR G G +GP+GR G +G GP G
Sbjct: 1418 GRQGPEGTAGSDGIPGRDGRPGYQGDQGNDGDPGPVGPAGRRGNPGVAGLPGAQGPPG-- 1475
Query: 173 RYLGPSGRLRYLGPSGR 189
+ G SG LGP G+
Sbjct: 1476 -FKGESGLPGQLGPPGK 1491
>sp|P05997|CO5A2_HUMAN Collagen alpha-2(V) chain OS=Homo sapiens GN=COL5A2 PE=1 SV=3
Length = 1499
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 66/183 (36%), Gaps = 3/183 (1%)
Query: 13 LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
GP G G G + G +G GP G +GP G GP G +GP G
Sbjct: 458 TGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGP 517
Query: 73 LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
+ G G+ + G G GP G GP G G G G G + G
Sbjct: 518 VGERGAPGNRGFPGSDG---LPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGL 574
Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 192
+G GP G+L LG G GP G + G G + GP G G G
Sbjct: 575 TGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGN 634
Query: 193 LGL 195
G+
Sbjct: 635 AGV 637
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.150 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,616,392
Number of Sequences: 539616
Number of extensions: 5145755
Number of successful extensions: 42016
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 8652
Number of HSP's gapped (non-prelim): 9899
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)