Query psy5765
Match_columns 205
No_of_seqs 18 out of 20
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 17:26:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11259 DUF3060: Protein of u 93.0 0.18 3.9E-06 36.1 4.2 49 105-154 5-53 (61)
2 PF11259 DUF3060: Protein of u 91.4 0.56 1.2E-05 33.6 5.1 24 134-157 7-30 (61)
3 PF04790 Sarcoglycan_1: Sarcog 18.9 7E+02 0.015 22.6 8.0 17 161-177 205-221 (264)
4 COG0321 LipB Lipoate-protein l 18.8 85 0.0018 28.2 2.1 14 98-111 79-92 (221)
5 PRK09946 hypothetical protein; 16.8 2E+02 0.0042 26.7 4.0 28 143-171 203-230 (270)
6 PF04213 HtaA: Htaa; InterPro 15.6 3.8E+02 0.0083 22.2 5.2 30 135-164 67-96 (168)
7 PRK15313 autotransport protein 12.8 1E+03 0.022 26.0 8.3 30 120-149 220-249 (955)
8 PF04213 HtaA: Htaa; InterPro 12.1 4E+02 0.0086 22.1 4.3 62 113-177 39-100 (168)
9 PRK14347 lipoate-protein ligas 11.3 1.7E+02 0.0038 25.7 2.0 13 99-111 72-84 (209)
10 PRK15313 autotransport protein 10.9 7.2E+02 0.016 27.0 6.6 72 120-192 220-291 (955)
No 1
>PF11259 DUF3060: Protein of unknown function (DUF3060); InterPro: IPR021417 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.
Probab=93.05 E-value=0.18 Score=36.13 Aligned_cols=49 Identities=12% Similarity=0.279 Sum_probs=19.4
Q ss_pred CCCeeEeeCCCCceEEeCCCCcccCCCCCCceEEecCCCceEeecCCCce
Q psy5765 105 PSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRL 154 (205)
Q Consensus 105 ~s~~v~~~Gps~~v~~~Gps~~i~~~G~S~~l~~~G~s~~l~~~G~s~~l 154 (205)
..++|++.|.-.+|+..|..+++..+-.. +|+..|.++++.|+.-+..|
T Consensus 5 ~~N~vt~~G~c~~vtV~G~~n~V~~~~v~-~i~v~G~~N~V~~~~G~P~v 53 (61)
T PF11259_consen 5 SGNTVTVTGDCGSVTVSGSDNTVTVDSVD-NISVSGSDNTVTYKSGDPKV 53 (61)
T ss_pred cCCEEEEEeEEeEEEEEcccCEEEEeeee-EEEEEecCCEEEecCCCceE
Confidence 33333333333334444433333333222 24444444444444333333
No 2
>PF11259 DUF3060: Protein of unknown function (DUF3060); InterPro: IPR021417 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.
Probab=91.42 E-value=0.56 Score=33.60 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=9.0
Q ss_pred CceEEecCCCceEeecCCCceeee
Q psy5765 134 GRLRYLGPSGRLRYLGPSGRLRYL 157 (205)
Q Consensus 134 ~~l~~~G~s~~l~~~G~s~~l~~~ 157 (205)
++|..+|.-..|.-.|.+++|.+.
T Consensus 7 N~vt~~G~c~~vtV~G~~n~V~~~ 30 (61)
T PF11259_consen 7 NTVTVTGDCGSVTVSGSDNTVTVD 30 (61)
T ss_pred CEEEEEeEEeEEEEEcccCEEEEe
Confidence 333333333333333333333333
No 3
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=18.86 E-value=7e+02 Score=22.58 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=8.8
Q ss_pred CceEeecCCceeEEecC
Q psy5765 161 GRLRYLGPSGRLRYLGP 177 (205)
Q Consensus 161 ~~l~~~gpSg~L~~~g~ 177 (205)
..|.++..+|.|.+.++
T Consensus 205 ~di~L~S~~G~i~Lda~ 221 (264)
T PF04790_consen 205 QDISLNSTDGSIVLDAE 221 (264)
T ss_pred CCEEEEecCCeEEEecC
Confidence 44555555555555553
No 4
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=18.76 E-value=85 Score=28.24 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=6.3
Q ss_pred CeEEeecCCCeeEe
Q psy5765 98 GRLRYLGPSGRLRY 111 (205)
Q Consensus 98 ~~l~~~G~s~~v~~ 111 (205)
+++|||||.|.|.|
T Consensus 79 GqvTyHGPGQ~V~Y 92 (221)
T COG0321 79 GQVTYHGPGQLVAY 92 (221)
T ss_pred ceeEEeCCCcEEEE
Confidence 34444444444444
No 5
>PRK09946 hypothetical protein; Provisional
Probab=16.80 E-value=2e+02 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=11.0
Q ss_pred CceEeecCCCceeeeeCCCceEeecCCce
Q psy5765 143 GRLRYLGPSGRLRYLGPSGRLRYLGPSGR 171 (205)
Q Consensus 143 ~~l~~~G~s~~l~~~G~s~~l~~~gpSg~ 171 (205)
-.+.-.|...-+.=.|..+.+.+ |+.|-
T Consensus 203 ~~i~ssG~~Sv~~stG~~~~~~~-g~gG~ 230 (270)
T PRK09946 203 VHIIASGENSTVVSTGVVDSIIL-GPGGS 230 (270)
T ss_pred eeeEeecCccEEEEecchhhhhc-CCCce
Confidence 33333333333333444444333 44443
No 6
>PF04213 HtaA: Htaa; InterPro: IPR007331 This domain is found in HtaA, a secreted protein implicated in iron acquisition and transport [].
Probab=15.59 E-value=3.8e+02 Score=22.22 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=12.8
Q ss_pred ceEEecCCCceEeecCCCceeeeeCCCceE
Q psy5765 135 RLRYLGPSGRLRYLGPSGRLRYLGPSGRLR 164 (205)
Q Consensus 135 ~l~~~G~s~~l~~~G~s~~l~~~G~s~~l~ 164 (205)
+|+|+|....|-..=++.+|.+.|....|.
T Consensus 67 ~V~f~gh~g~Ldlt~snp~I~~~g~~g~L~ 96 (168)
T PF04213_consen 67 SVRFTGHHGILDLTISNPRIVFDGGTGTLY 96 (168)
T ss_pred EEEEEeeCCeEEEEEeCCEEEEECCeEEEE
Confidence 444444444443333444444444443333
No 7
>PRK15313 autotransport protein MisL; Provisional
Probab=12.78 E-value=1e+03 Score=26.02 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=13.6
Q ss_pred EeCCCCcccCCCCCCceEEecCCCceEeec
Q psy5765 120 YLGPSGRLNSDGPSGRLRYLGPSGRLRYLG 149 (205)
Q Consensus 120 ~~Gps~~i~~~G~S~~l~~~G~s~~l~~~G 149 (205)
.+|+..+|++.|.|-.=.++++|..+..+|
T Consensus 220 ~~gd~~~i~t~g~~~~~~~~~~~~~~~~lg 249 (955)
T PRK15313 220 VVGNRAHIVTTGDSSEGLRTGQSGSLIRLG 249 (955)
T ss_pred EecccceEEEecccccceeecCCcceEEec
Confidence 455555565555543333333333333333
No 8
>PF04213 HtaA: Htaa; InterPro: IPR007331 This domain is found in HtaA, a secreted protein implicated in iron acquisition and transport [].
Probab=12.07 E-value=4e+02 Score=22.13 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=37.6
Q ss_pred CCCCceEEeCCCCcccCCCCCCceEEecCCCceEeecCCCceeeeeCCCceEeecCCceeEEecC
Q psy5765 113 GPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGP 177 (205)
Q Consensus 113 Gps~~v~~~Gps~~i~~~G~S~~l~~~G~s~~l~~~G~s~~l~~~G~s~~l~~~gpSg~L~~~g~ 177 (205)
-..+.+.|...++......-...|.|.| .++|+|..+-|-+.=++=+|.+.+..++|.-.-.
T Consensus 39 ~~~g~F~F~~~~g~~d~~~~~~~i~f~G---~V~f~gh~g~Ldlt~snp~I~~~g~~g~L~adv~ 100 (168)
T PF04213_consen 39 NDGGEFTFPFASGTYDPATGTGTIRFSG---SVRFTGHHGILDLTISNPRIVFDGGTGTLYADVS 100 (168)
T ss_pred cCCCeEEecCCCeEEecCCCeEEEEeCC---EEEEEeeCCeEEEEEeCCEEEEECCeEEEEEEEE
Confidence 3446666666666665555666666655 5666666666666666666666666655554433
No 9
>PRK14347 lipoate-protein ligase B; Provisional
Probab=11.32 E-value=1.7e+02 Score=25.73 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=5.7
Q ss_pred eEEeecCCCeeEe
Q psy5765 99 RLRYLGPSGRLRY 111 (205)
Q Consensus 99 ~l~~~G~s~~v~~ 111 (205)
.+|||||.|-|-|
T Consensus 72 ~vTyHGPGQlV~Y 84 (209)
T PRK14347 72 KFTFHGPGQRVIY 84 (209)
T ss_pred ceEEeCCCcEEEE
Confidence 3444444444443
No 10
>PRK15313 autotransport protein MisL; Provisional
Probab=10.95 E-value=7.2e+02 Score=27.02 Aligned_cols=72 Identities=25% Similarity=0.307 Sum_probs=0.0
Q ss_pred EeCCCCcccCCCCCCceEEecCCCceEeecCCCceeeeeCCCceEeecCCceeEEecCCCceeeeCCCCceEe
Q psy5765 120 YLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 192 (205)
Q Consensus 120 ~~Gps~~i~~~G~S~~l~~~G~s~~l~~~G~s~~l~~~G~s~~l~~~gpSg~L~~~g~s~~l~~~gpS~~l~~ 192 (205)
.+|+..+|++.|.|-.=.++++|..+..+|-+-+|+-.|.+.|=.| ..+....-+|+.-.+.-.|-+.+-.|
T Consensus 220 ~~gd~~~i~t~g~~~~~~~~~~~~~~~~lg~~~~i~~~~~~~~~iy-a~~~~~~~lg~~~~i~~~g~~~~a~y 291 (955)
T PRK15313 220 VVGNRAHIVTTGDSSEGLRTGQSGSLIRLGDDATIETSGASSTGIY-AASSSRTELGNNATITVNGASAHAVY 291 (955)
T ss_pred EecccceEEEecccccceeecCCcceEEecCcceEEEecccceeEe-cCCceeEEecCCceEeecccccceee
Done!