Query psy5765
Match_columns 205
No_of_seqs 18 out of 20
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 17:27:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks0_A Uncharacterized protein 7.2 3E+02 0.01 19.4 2.7 47 159-205 19-66 (71)
2 3ivr_A Putative long-chain-fat 5.9 8.2E+02 0.028 20.9 5.2 31 117-147 331-361 (509)
3 3cjx_A Protein of unknown func 5.0 7.8E+02 0.027 19.1 4.2 33 170-202 109-156 (165)
4 2v7b_A Benzoate-coenzyme A lig 4.6 7.9E+02 0.027 21.1 4.3 28 117-144 362-389 (529)
5 2inu_A Insulin fructotransfera 4.4 8.1E+02 0.028 22.5 4.5 78 116-202 332-409 (410)
6 2l7s_A Adrenomedullin, ADM, AM 4.2 1.2E+02 0.004 20.9 -1.0 8 2-9 18-25 (53)
7 3rg2_A Enterobactin synthase c 4.2 9.1E+02 0.031 21.4 4.5 27 117-143 366-392 (617)
8 2lix_A IMKTX104, potassium cha 5.8 1.9E+02 0.0065 17.3 0.0 10 1-10 15-24 (27)
9 1w66_A Lipoyltransferase; lipo 3.8 4.1E+02 0.014 21.9 1.7 15 97-111 79-93 (232)
10 1t6l_A DNA polymerase processi 3.7 7.4E+02 0.025 21.9 3.4 23 99-122 190-213 (290)
No 1
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=7.23 E-value=3e+02 Score=19.40 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=28.4
Q ss_pred CCCceEeecCCceeEEecCCCceeeeCCC-CceEeeeCCCCccccCCC
Q psy5765 159 PSGRLRYLGPSGRLRYLGPSGRLRYLGPS-GRLRYLGLSDGLRVSGLH 205 (205)
Q Consensus 159 ~s~~l~~~gpSg~L~~~g~s~~l~~~gpS-~~l~~~~~~~g~r~~~~~ 205 (205)
+++.++..-.-|.|...|++..+.....+ |.|..-|.=|.|.|+.-|
T Consensus 19 d~e~i~L~T~~G~L~IkG~~L~I~~L~lE~Gev~IeG~I~sl~Y~~~~ 66 (71)
T 2ks0_A 19 DPKEILLETIQGVLSIKGEKLGIKHLDLKAGQVEVEGLIDALVYPLEH 66 (71)
T ss_dssp CSSEEEEEETTEEEEEEEECCC-----CCTTCEEEEEEEEEEECCCTT
T ss_pred CCCEEEEEeCceEEEEEcCCcEEeEeecCccEEEEEEEEEEEEECCcc
Confidence 45566666677777777877777776665 666666666666665543
No 2
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=5.85 E-value=8.2e+02 Score=20.87 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=13.9
Q ss_pred ceEEeCCCCcccCCCCCCceEEecCCCceEe
Q psy5765 117 RLRYLGPSGRLNSDGPSGRLRYLGPSGRLRY 147 (205)
Q Consensus 117 ~v~~~Gps~~i~~~G~S~~l~~~G~s~~l~~ 147 (205)
++.++.+.+.++..|.-+.|...|+.-..-|
T Consensus 331 ~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY 361 (509)
T 3ivr_A 331 TVAVVDAEDRPLPPGEVGEIVLRGPTVFKGY 361 (509)
T ss_dssp EEEEECTTSCBCCTTCCEEEEEESTTSCCEE
T ss_pred EEEEECCCCCCCCCCCceEEEEecCCccccc
Confidence 3444444444444444455544444433333
No 3
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=5.01 E-value=7.8e+02 Score=19.10 Aligned_cols=33 Identities=18% Similarity=0.019 Sum_probs=19.0
Q ss_pred ceeEEecCCCceeeeCCCCceEe---------------eeCCCCcccc
Q psy5765 170 GRLRYLGPSGRLRYLGPSGRLRY---------------LGLSDGLRVS 202 (205)
Q Consensus 170 g~L~~~g~s~~l~~~gpS~~l~~---------------~~~~~g~r~~ 202 (205)
+.+.|-=-.+.|.|..|+++... ++.++||||-
T Consensus 109 gci~l~v~~GpL~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 156 (165)
T 3cjx_A 109 QTEVIFMLSGCNVNFTQDGTYLGLSDAGVIKNWVDRAIREQDNGLRYI 156 (165)
T ss_dssp CEEEEEEEESCEEEECTTCCEEEEECHHHHHHHHHHHHHHTTCCCCCE
T ss_pred CcEEEEEEeccceecCCCCCEEEEEeHHHHHHHHHHHHhhhccCeeee
Confidence 44333333345777777776665 3557777764
No 4
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=4.60 E-value=7.9e+02 Score=21.09 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=14.6
Q ss_pred ceEEeCCCCcccCCCCCCceEEecCCCc
Q psy5765 117 RLRYLGPSGRLNSDGPSGRLRYLGPSGR 144 (205)
Q Consensus 117 ~v~~~Gps~~i~~~G~S~~l~~~G~s~~ 144 (205)
++.++-+.+.++..|.-|.|...|+...
T Consensus 362 ~~~i~d~~g~~~~~g~~GEl~v~g~~~~ 389 (529)
T 2v7b_A 362 EIELRDEAGHAVPDGEVGDLYIKGPSAA 389 (529)
T ss_dssp EEEEECTTSCBCCTTSCEEEEEECTTCC
T ss_pred EEEEECCCCCCCCCCCccEEEEecCCcc
Confidence 4444555555555555555555554433
No 5
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*
Probab=4.42 E-value=8.1e+02 Score=22.54 Aligned_cols=78 Identities=9% Similarity=0.070 Sum_probs=44.2
Q ss_pred CceEEeCCCCcccCCCCCCceEEecCCCceEeecCCCceeeeeCCCceEeecCCceeEEecCCCceeeeCCCCceEeeeC
Q psy5765 116 GRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGL 195 (205)
Q Consensus 116 ~~v~~~Gps~~i~~~G~S~~l~~~G~s~~l~~~G~s~~l~~~G~s~~l~~~gpSg~L~~~g~s~~l~~~gpS~~l~~~~~ 195 (205)
|+|.+--....|...|+--+..|.-++.+-.+. .+++.+-...-+|.+++.|.+=.+++ .|.+..|.+...
T Consensus 332 N~i~~~~~~~~i~~s~~~p~~i~i~~g~~N~i~--~N~iv~N~~~~~v~~~a~s~~n~v~~-------~gn~~qv~~~~~ 402 (410)
T 2inu_A 332 NLFAYNVPPANIAPAGAQPTQILIAGGDANVVA--LNHVVSDVASQHVVLDASTTHSKVLD-------SGTASQITSYSS 402 (410)
T ss_dssp EEEEEECCGGGSSSTTCCCEEEEEEECBSCEEE--EEEEEESSCCEEEEECTTCBSCEEES-------SSCGGGEEECSS
T ss_pred CEEEeecCccccccccCCCEEEEeecCCccEEE--CCEEEeccceEEEEEEcccCCcEEEe-------cCChHHeEEccc
Confidence 556666666666666666665555544443332 35555544445555555554433333 666777777777
Q ss_pred CCCcccc
Q psy5765 196 SDGLRVS 202 (205)
Q Consensus 196 ~~g~r~~ 202 (205)
.+-+|.+
T Consensus 403 ~~~~~~~ 409 (410)
T 2inu_A 403 DTAIRPT 409 (410)
T ss_dssp SCEEECC
T ss_pred cceEecC
Confidence 7766654
No 6
>2l7s_A Adrenomedullin, ADM, AM; hormone, PRE-Pro-adrenomedullin; NMR {Homo sapiens}
Probab=4.24 E-value=1.2e+02 Score=20.91 Aligned_cols=8 Identities=75% Similarity=1.493 Sum_probs=5.7
Q ss_pred ccceeeee
Q psy5765 2 FGTCVVEK 9 (205)
Q Consensus 2 ~~~~~~~~ 9 (205)
+|||.|.+
T Consensus 18 LgTCqvqn 25 (53)
T 2l7s_A 18 FGTCTVQK 25 (53)
T ss_dssp SSSSSHHH
T ss_pred eeeehHHH
Confidence 67887754
No 7
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=4.21 E-value=9.1e+02 Score=21.44 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=14.0
Q ss_pred ceEEeCCCCcccCCCCCCceEEecCCC
Q psy5765 117 RLRYLGPSGRLNSDGPSGRLRYLGPSG 143 (205)
Q Consensus 117 ~v~~~Gps~~i~~~G~S~~l~~~G~s~ 143 (205)
++.++-+.+.++..|.-+.|-..|+.-
T Consensus 366 ~~~i~d~~~~~~p~G~~GEl~i~G~~v 392 (617)
T 3rg2_A 366 EVWVADAEGNPLPQGEVGRLMTRGPYT 392 (617)
T ss_dssp EEEEECTTSCBCCTTCCEEEEEECSSS
T ss_pred eEEEECCCCCCCCCCCceEEEecCccc
Confidence 444455555555555555555555443
No 8
>2lix_A IMKTX104, potassium channel toxins; disulfide bond stabilized structure; NMR {Lychas mucronatus}
Probab=5.81 E-value=1.9e+02 Score=17.28 Aligned_cols=10 Identities=60% Similarity=0.916 Sum_probs=7.0
Q ss_pred Cccceeeeee
Q psy5765 1 TFGTCVVEKA 10 (205)
Q Consensus 1 ~~~~~~~~~~ 10 (205)
|.||||--|.
T Consensus 15 tigtcvdgkc 24 (27)
T 2lix_A 15 TIGTCVDGKC 24 (27)
Confidence 5688986653
No 9
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=3.76 E-value=4.1e+02 Score=21.94 Aligned_cols=15 Identities=27% Similarity=0.767 Sum_probs=8.0
Q ss_pred CCeEEeecCCCeeEe
Q psy5765 97 SGRLRYLGPSGRLRY 111 (205)
Q Consensus 97 S~~l~~~G~s~~v~~ 111 (205)
-+.++||||.|-|.|
T Consensus 79 GG~~tYHgPGQlv~Y 93 (232)
T 1w66_A 79 GGKITWHGPGQLVGY 93 (232)
T ss_dssp SSSEEEECTTEEEEE
T ss_pred CCceEEECCCCeEEE
Confidence 345555555555544
No 10
>1t6l_A DNA polymerase processivity factor; processivity fold, replication; HET: DNA; 1.85A {Human herpesvirus 5} SCOP: d.131.1.2 d.131.1.2 PDB: 1yyp_A*
Probab=3.73 E-value=7.4e+02 Score=21.92 Aligned_cols=23 Identities=13% Similarity=0.554 Sum_probs=0.0
Q ss_pred eEEee-cCCCeeEeeCCCCceEEeC
Q psy5765 99 RLRYL-GPSGRLRYLGPSGRLRYLG 122 (205)
Q Consensus 99 ~l~~~-G~s~~v~~~Gps~~v~~~G 122 (205)
.|-|. ++.+|+-| .+++||+|++
T Consensus 190 tiKf~l~~~~ElEF-ta~~rV~Fh~ 213 (290)
T 1t6l_A 190 AIKFILTNGSELEF-TSNNRVSFHG 213 (290)
T ss_dssp EEEEEETTSCEEEE-CCTTTEEESS
T ss_pred ceEEEecCCceEEE-ecCCeEEEee
Done!