Query psy5765
Match_columns 205
No_of_seqs 18 out of 20
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 17:27:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5765.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5765hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w66a1 d.104.1.3 (A:1-216) Li 11.1 48 0.0035 25.7 1.7 14 98-111 78-91 (216)
2 d1t6la2 d.131.1.2 (A:136-270) 8.2 1.4E+02 0.011 22.0 3.4 21 103-124 60-80 (135)
3 d2cnda1 b.43.4.2 (A:11-124) Ni 7.9 63 0.0046 21.1 1.1 20 103-122 94-113 (114)
4 d2v4ja2 d.58.36.2 (A:2-167) Di 6.7 1.2E+02 0.0086 23.2 2.3 14 28-41 129-142 (166)
5 d1m1ha1 b.114.1.1 (A:51-131) N 6.2 2.6E+02 0.019 18.7 3.7 29 136-164 16-44 (81)
6 d3c7ba2 d.58.36.2 (A:1-166) Di 5.7 1.2E+02 0.0087 23.2 1.8 18 25-42 124-141 (166)
7 d1umka1 b.43.4.2 (A:30-153) cy 5.1 1.2E+02 0.0085 19.9 1.2 23 100-122 101-123 (124)
8 d1mbya_ d.223.1.1 (A:) Serine/ 3.5 2.9E+02 0.021 18.3 2.2 18 180-197 36-53 (75)
9 d2qmwa1 c.94.1.1 (A:1-184) Pre 3.0 2.3E+02 0.017 20.7 1.4 12 117-128 2-13 (184)
10 d1hyua3 c.47.1.2 (A:1-102) Alk 2.9 2.4E+02 0.017 19.0 1.4 14 140-153 71-85 (102)
No 1
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=11.07 E-value=48 Score=25.69 Aligned_cols=14 Identities=29% Similarity=0.812 Sum_probs=7.2
Q ss_pred CeEEeecCCCeeEe
Q psy5765 98 GRLRYLGPSGRLRY 111 (205)
Q Consensus 98 ~~l~~~G~s~~v~~ 111 (205)
+.+|||||.|-|.|
T Consensus 78 G~vTyHGPGQlV~Y 91 (216)
T d1w66a1 78 GKITWHGPGQLVGY 91 (216)
T ss_dssp SSEEEECTTEEEEE
T ss_pred ceEEEecCCceeeE
Confidence 44555555555544
No 2
>d1t6la2 d.131.1.2 (A:136-270) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]}
Probab=8.21 E-value=1.4e+02 Score=22.00 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=13.8
Q ss_pred ecCCCeeEeeCCCCceEEeCCC
Q psy5765 103 LGPSGRLRYLGPSGRLRYLGPS 124 (205)
Q Consensus 103 ~G~s~~v~~~Gps~~v~~~Gps 124 (205)
++..+++-| .+++||+|++--
T Consensus 60 l~~~sElEF-ta~~rVsFh~VK 80 (135)
T d1t6la2 60 LTNGSELEF-TSNNRVSFHGVK 80 (135)
T ss_dssp ETTSCEEEE-CCTTTEEESSCC
T ss_pred ecCCceEEE-ecCCeEEEeeee
Confidence 566777777 666666666543
No 3
>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}
Probab=7.86 E-value=63 Score=21.12 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=12.6
Q ss_pred ecCCCeeEeeCCCCceEEeC
Q psy5765 103 LGPSGRLRYLGPSGRLRYLG 122 (205)
Q Consensus 103 ~G~s~~v~~~Gps~~v~~~G 122 (205)
+=+...|.+-||.|++.|.|
T Consensus 94 l~~Gd~v~i~gP~G~F~y~g 113 (114)
T d2cnda1 94 LPVGSYIDVKGPLGHVEYTG 113 (114)
T ss_dssp CCTTCEEEEEEEECSEECCS
T ss_pred CCCCCEEEEECCceeeEECC
Confidence 33566666666677666655
No 4
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=6.70 E-value=1.2e+02 Score=23.15 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=5.7
Q ss_pred eeeeCCCCeeeeec
Q psy5765 28 LRYLGPSGSLRYLG 41 (205)
Q Consensus 28 ~~~~GpS~~i~~~G 41 (205)
++.+|++++|.++|
T Consensus 129 tNmHGsTGDiillG 142 (166)
T d2v4ja2 129 TNMHGSTGDIVLLG 142 (166)
T ss_dssp EESCCTTSCEEEEC
T ss_pred cccCCCCCCEEEec
Confidence 33444444444433
No 5
>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
Probab=6.22 E-value=2.6e+02 Score=18.75 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=12.7
Q ss_pred eEEecCCCceEeecCCCceeeeeCCCceE
Q psy5765 136 LRYLGPSGRLRYLGPSGRLRYLGPSGRLR 164 (205)
Q Consensus 136 l~~~G~s~~l~~~G~s~~l~~~G~s~~l~ 164 (205)
|++-|+.+.|.-+|--+--.|+=.++.++
T Consensus 16 lslkg~nr~i~v~gkkgit~f~iedg~vr 44 (81)
T d1m1ha1 16 LSLKGNARDISVLGKKGVTTFRIENGEVK 44 (81)
T ss_dssp EESSSSCEEEEEECSSSEEEEEECSSCEE
T ss_pred EEecCCCceeeeecccceEEEEEcCCeEE
Confidence 44444444444444444444444444443
No 6
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.69 E-value=1.2e+02 Score=23.16 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=8.6
Q ss_pred CCeeeeeCCCCeeeeecC
Q psy5765 25 SGSLRYLGPSGSLRYLGP 42 (205)
Q Consensus 25 S~~~~~~GpS~~i~~~Gp 42 (205)
|+-++.+|++++|.++|-
T Consensus 124 SGLtNmHGsTGDII~lGt 141 (166)
T d3c7ba2 124 SGLTNFHGSTGDIIFLGT 141 (166)
T ss_dssp CSEEESCCSSSCEEEEEE
T ss_pred ccceecCCCCCCEEEecC
Confidence 344445555555544443
No 7
>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.05 E-value=1.2e+02 Score=19.88 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=14.4
Q ss_pred EEeecCCCeeEeeCCCCceEEeC
Q psy5765 100 LRYLGPSGRLRYLGPSGRLRYLG 122 (205)
Q Consensus 100 l~~~G~s~~v~~~Gps~~v~~~G 122 (205)
+.=+=+...|.+-||.|++.|.|
T Consensus 101 l~~l~~GD~v~v~gP~G~F~y~g 123 (124)
T d1umka1 101 LESMQIGDTIEFRGPSGLLVYQG 123 (124)
T ss_dssp HHHCCTTCEEEEEEEECSEEEEE
T ss_pred HhcCCCCCEEEEECCeeeeEECC
Confidence 33344566677777777777665
No 8
>d1mbya_ d.223.1.1 (A:) Serine/threonine-protein kinase Sak C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.45 E-value=2.9e+02 Score=18.29 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=7.9
Q ss_pred ceeeeCCCCceEeeeCCC
Q psy5765 180 RLRYLGPSGRLRYLGLSD 197 (205)
Q Consensus 180 ~l~~~gpS~~l~~~~~~~ 197 (205)
.+.|+-|+|+++--+++|
T Consensus 36 ~I~Yt~~~G~~~~y~~~d 53 (75)
T d1mbya_ 36 SISYTSPDGQTTRYGENE 53 (75)
T ss_dssp EEEEECTTSCEEEEETTS
T ss_pred eEEEECCCCceeecCccc
Confidence 444444444444444433
No 9
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]}
Probab=3.02 E-value=2.3e+02 Score=20.74 Aligned_cols=12 Identities=50% Similarity=1.085 Sum_probs=6.8
Q ss_pred ceEEeCCCCccc
Q psy5765 117 RLRYLGPSGRLN 128 (205)
Q Consensus 117 ~v~~~Gps~~i~ 128 (205)
||.|+||.++-+
T Consensus 2 ki~yLGp~GtfS 13 (184)
T d2qmwa1 2 QLYYLGPKGTFS 13 (184)
T ss_dssp EEEEECSTTSHH
T ss_pred EEEEeCCCChHH
Confidence 455666666544
No 10
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=2.92 E-value=2.4e+02 Score=18.99 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=0.0
Q ss_pred cCCCceEeec-CCCc
Q psy5765 140 GPSGRLRYLG-PSGR 153 (205)
Q Consensus 140 G~s~~l~~~G-~s~~ 153 (205)
|..-+|+|.| |+||
T Consensus 71 g~~~gI~F~GiP~Gh 85 (102)
T d1hyua3 71 GSQQGPRFAGSPLGH 85 (102)
T ss_dssp TCCCSCEEESCCCGG
T ss_pred CCEeeeEEecCCCcc
Done!