RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5765
         (205 letters)



>gnl|CDD|191698 pfam07202, Tcp10_C, T-complex protein 10 C-terminus.  This family
           represents the C-terminus (approximately 180 residues)
           of eukaryotic T-complex protein 10. The T-complex is
           involved in spermatogenesis in mice.
          Length = 179

 Score = 34.0 bits (78), Expect = 0.024
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 15  PSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG--- 71
           P+G+     P GS     P G+++ L P G+   + P G++  +  +G      P+G   
Sbjct: 72  PNGQTEKHFPDGSKEIHFPDGTVKILNPDGQEESVYPDGTVVRVSRNGDKEIEFPNGQRE 131

Query: 72  -------RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRL 109
                  R  Y  P G+++ + P+GR      SGR+R     GR+
Sbjct: 132 IHTKRYKRREY--PDGTVKTVYPNGRQETRYSSGRVRVKDKDGRV 174



 Score = 34.0 bits (78), Expect = 0.029
 Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 23/170 (13%)

Query: 24  PSGSLRYLGPSGSLRYLGPSGR-LRYLGPSGSLRYLGPSGRLRYLG----------PSGR 72
             GS     P+G+ + +   G+ +     +G ++   P G + Y            P G 
Sbjct: 7   ADGSRVIWFPNGTRKEISADGKTVIVTFFNGDIKQTMPDGTVIYYYAEAQTTHTTYPDGL 66

Query: 73  LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
                P+G      P G      P G ++ L P G+   + P G +  +  +G    + P
Sbjct: 67  EVLQFPNGQTEKHFPDGSKEIHFPDGTVKILNPDGQEESVYPDGTVVRVSRNGDKEIEFP 126

Query: 133 SG----------RLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 172
           +G          R  Y  P G ++ + P+GR      SGR+R     GR+
Sbjct: 127 NGQREIHTKRYKRREY--PDGTVKTVYPNGRQETRYSSGRVRVKDKDGRV 174



 Score = 33.6 bits (77), Expect = 0.039
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 33  PSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSG--- 89
           P+G      P G      P G+++ L P G+   + P G +  +  +G      P+G   
Sbjct: 72  PNGQTEKHFPDGSKEIHFPDGTVKILNPDGQEESVYPDGTVVRVSRNGDKEIEFPNGQRE 131

Query: 90  -------RLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSD 130
                  R  Y  P G ++ + P+GR      SGR+R     GR+  D
Sbjct: 132 IHTKRYKRREY--PDGTVKTVYPNGRQETRYSSGRVRVKDKDGRVIMD 177



 Score = 33.3 bits (76), Expect = 0.041
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 19/174 (10%)

Query: 9   KALNLGPSGRLRYLGPSGSLRYLGPSG-SLRYLGPSGRLRYLGPSGSLRYLG-------- 59
           K   +   G      P+G+ + +   G ++     +G ++   P G++ Y          
Sbjct: 1   KVEKVFADGSRVIWFPNGTRKEISADGKTVIVTFFNGDIKQTMPDGTVIYYYAEAQTTHT 60

Query: 60  --PSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 117
             P G      P+G+     P GS     P G ++ L P G+   + P G +  +  +G 
Sbjct: 61  TYPDGLEVLQFPNGQTEKHFPDGSKEIHFPDGTVKILNPDGQEESVYPDGTVVRVSRNGD 120

Query: 118 LRYLGPSGR--LNSDG------PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 163
                P+G+  +++        P G ++ + P+GR      SGR+R     GR+
Sbjct: 121 KEIEFPNGQREIHTKRYKRREYPDGTVKTVYPNGRQETRYSSGRVRVKDKDGRV 174


>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
          Length = 540

 Score = 31.3 bits (71), Expect = 0.39
 Identities = 33/107 (30%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 99  RLRYLGPSGRLRYLGPSGRLRYLGP-SGRLNSDGPSGRLRYLGPSGRLRYLG-PSGRLRY 156
            +R  G  GR     P  R+R   P  G L  DG SG +    PS    YL  P    R 
Sbjct: 345 SVRIEG-GGRPAS--PEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARA 401

Query: 157 LGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGLSDGLRVSG 203
           L   G  R    +G L Y    G+  Y    G        D LR+ G
Sbjct: 402 LTDDGYFR----TGDLGYTRGDGQFVYQTRMG--------DSLRLGG 436


>gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed.
          Length = 294

 Score = 26.9 bits (60), Expect = 7.5
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 14/60 (23%)

Query: 145 LRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGLSDGLRVSGL 204
           LR+  P+GRL  L P+G   +L PS                PS  L  L +  GL VSG 
Sbjct: 14  LRWNKPTGRLILLIPAGWSLWLTPSAP--------------PSLLLLLLIILGGLAVSGA 59


>gnl|CDD|177820 PLN02161, PLN02161, beta-amylase.
          Length = 531

 Score = 26.9 bits (59), Expect = 8.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 3   GTCVVEKALNLGPSGRLRYLG-PSGSLRYLGP 33
           G  + E ++ LGPSG LRY   PSG  R+  P
Sbjct: 254 GNVIEEISIGLGPSGELRYPAHPSGDGRWKFP 285


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.150    0.466 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,373,910
Number of extensions: 1152170
Number of successful extensions: 1234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1201
Number of HSP's successfully gapped: 30
Length of query: 205
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 113
Effective length of database: 6,857,034
Effective search space: 774844842
Effective search space used: 774844842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)