RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5765
         (205 letters)



>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular,
           packing structure; 5.16A {Rattus norvegicus} SCOP:
           i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A
          Length = 1054

 Score = 30.1 bits (68), Expect = 0.55
 Identities = 47/175 (26%), Positives = 58/175 (33%)

Query: 14  GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
           G  G     G  G     G +G     G +G     GP G     GP+G     GP+G  
Sbjct: 350 GSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPP 409

Query: 74  RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
              G +G + + GP G     G +G     GP G +   G  G     GP G     G  
Sbjct: 410 GARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGER 469

Query: 134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
           G     G  G     GP+G     G  G     G  G     G  G   + G  G
Sbjct: 470 GEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERG 524


>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen,
           jelly- roll topology, structural protein; 1.36A
           {Bacillus anthracis}
          Length = 220

 Score = 29.2 bits (65), Expect = 0.80
 Identities = 30/188 (15%), Positives = 52/188 (27%), Gaps = 3/188 (1%)

Query: 14  GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
           GP+G     GP+G     G +G     GP+G     G +G     GP+G      P+G  
Sbjct: 29  GPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLY 88

Query: 74  RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPS---GRLRYLGPSGRLNSD 130
            +     SL              S     +       ++       ++  +  +   +  
Sbjct: 89  AFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATASVL 148

Query: 131 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
           G         P         S     +  +       PS     +   G    LG S  +
Sbjct: 149 GGLTIQVNGVPVPGTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGTSASI 208

Query: 191 RYLGLSDG 198
               ++  
Sbjct: 209 IIEKVAHH 216


>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural
           genomics, PSI, protein structure initiative; 2.25A
           {Vibrio parahaemolyticus} SCOP: d.63.1.2
          Length = 189

 Score = 26.5 bits (58), Expect = 5.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 130 DGPSGRLRYLGPSGRLRYLGPSGRLRY 156
           D P   L   G S  LR + P+G   +
Sbjct: 49  DTPQRTLTQQGKSLVLREIQPAGIKLW 75


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.150    0.466 

Gapped
Lambda     K      H
   0.267   0.0585    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,532,504
Number of extensions: 232928
Number of successful extensions: 612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 29
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)