BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5768
(652 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 174/616 (28%), Positives = 295/616 (47%), Gaps = 71/616 (11%)
Query: 20 GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 79
G+ TI+ D + + + S G ++WS+V+++ + + + VVS
Sbjct: 20 GKENATIVVGGLEDAAAVDFVFS------HGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 73
Query: 80 QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 139
P AC DW+ + +YW+D + N IEV+ L G R VL +DQP A+A+D
Sbjct: 74 GLLSPDGLAC------DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALD 127
Query: 140 PESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD-----LKFFSAFYRNL 194
P SG+++W++ G++P I RAG+DG + I+ I +TLD L + A +
Sbjct: 128 PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 187
Query: 195 SKGNI--------------HIISLSNLSDV---------STISMKPYGDSYLK------- 224
K N+ H +L+ D+ S ++ Y L+
Sbjct: 188 HKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF 247
Query: 225 ---DIKIYSKDAQ-TGTNPCGVNNGGCAELCLYNGVSAV--CACAHGV-VAQDGKSCSE- 276
DI +S+ Q TNPCG++NGGC+ LCL + V CAC GV + ++GK+C +
Sbjct: 248 SPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 307
Query: 277 -YDAFIMYSRVN-RIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQ 334
+ ++ R + R S+ D +D+ E IR++ I + YD ++++D +
Sbjct: 308 ATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHA------IAIDYDPVEGYIYWTDDE 361
Query: 335 KGTINSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI 393
I F +GS + ++ Q +G+A ++V LYWT D ++I++
Sbjct: 362 VRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT---DTGTDRIEVTRLNGTMR 418
Query: 394 VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALA 453
++ ++PR I +D +YWT+W +P I+RA G ++ T + PN LA
Sbjct: 419 KILISEDLEEPRAIVLDPMVGYMYWTDW-GEIPKIERAALDGSDRVVLVNTSLGWPNGLA 477
Query: 454 LDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVL 513
LD+ K++WGDA+ DKIE + DGT R VL + H F + G++++WTDW ++
Sbjct: 478 LDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIE 537
Query: 514 RANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCS 573
R +K + E + + + MG+ A + + PC NG C +C G + C+
Sbjct: 538 RVHKRSAEREVIIDQ-LPDLMGLKATNVH-RVIGSNPCAEENGGCSHLCLYRPQG-LRCA 594
Query: 574 CFTGKVLMEDNRSCTI 589
C G L+ D ++C +
Sbjct: 595 CPIGFELISDMKTCIV 610
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 285/586 (48%), Gaps = 65/586 (11%)
Query: 50 GKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
G ++WS+V+++ + + + VVS P AC DW+ + +YW+D +
Sbjct: 52 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC------DWLGEKLYWTDSET 105
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
N IEV+ L G R VL +DQP A+A+DP SG+++W++ G++P I RAG+DG + I+
Sbjct: 106 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 165
Query: 170 AQEIIMPIKDITLD-----LKFFSAFYRNLSKGNI--------------HIISLSNLSDV 210
I +TLD L + A + K N+ H +L+ D+
Sbjct: 166 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI 225
Query: 211 ---------STISMKPYGDSYLK----------DIKIYSKDAQ-TGTNPCGVNNGGCAEL 250
S ++ Y L+ DI +S+ Q TNPCG++NGGC+ L
Sbjct: 226 LYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHL 285
Query: 251 CLYNGVSAV--CACAHGV-VAQDGKSCSE--YDAFIMYSRVN-RIDSIHMTDKSDLNSPF 304
CL + V CAC GV + ++GK+C + + ++ R + R S+ D +D+
Sbjct: 286 CLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL 345
Query: 305 ESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ-GSVEGLAY 363
E IR++ I + YD ++++D + I F +GS + ++ Q +G+A
Sbjct: 346 EDIRHA------IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399
Query: 364 EYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNS 423
++V LYWT D ++I++ ++ ++PR I +D +YWT+W
Sbjct: 400 DWVARNLYWT---DTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW-G 455
Query: 424 HLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIV 483
+P I+RA G ++ T + PN LALD+ K++WGDA+ DKIE + DGT R V
Sbjct: 456 EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 515
Query: 484 LSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNL 543
L + H F + G++++WTDW ++ R +K + E + + + MG+ A + +
Sbjct: 516 LVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQ-LPDLMGLKATNVH- 573
Query: 544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTI 589
PC NG C +C G + C+C G L+ D ++C +
Sbjct: 574 RVIGSNPCAEENGGCSHLCLYRPQG-LRCACPIGFELISDMKTCIV 618
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 7/278 (2%)
Query: 313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN--HRVLLERQGSVEGLAYEYVHNYL 370
+++ + + + +++SD+ + I FN + V++ S +GLA +++ L
Sbjct: 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 98
Query: 371 YWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR 430
YWT D+ N+I++ + V+ + D+PR I +D +YWT+W +P I+R
Sbjct: 99 YWT---DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIER 154
Query: 431 AFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPL 490
A G II ++I PN L LD++ +KL+W DA+L+ I + + DGTNR + K S
Sbjct: 155 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 214
Query: 491 HPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTP 550
HPF + ++ + ++WTDW H++L NKYTGE + + +I PM I A S A P
Sbjct: 215 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 274
Query: 551 CRHLNGNCDDICKLDETGQVV-CSCFTGKVLMEDNRSC 587
C NG C +C + C+C TG L+E+ ++C
Sbjct: 275 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 312
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 126/266 (47%), Gaps = 45/266 (16%)
Query: 47 PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSD 106
PV+G ++W++ +V I +F+DG+ + VV+ A A IAVDW+A+N+YW+D
Sbjct: 358 PVEGYIYWTD--DEVRAIRRSFIDGSGSQFVVT-----AQIAHPDGIAVDWVARNLYWTD 410
Query: 107 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 166
+ IEV RL G R +LIS +++P A+ +DP GY++W++ G+IP I RA LDG +
Sbjct: 411 TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR 470
Query: 167 TILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMK---PYGDSYL 223
+L + + LD ++ + I +++ + K +G + L
Sbjct: 471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLL 530
Query: 224 KDI------------KIYSKDAQ----------------------TGTNPCGVNNGGCAE 249
D +++ + A+ G+NPC NGGC+
Sbjct: 531 GDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSH 590
Query: 250 LCLYNGVSAVCACAHGV-VAQDGKSC 274
LCLY CAC G + D K+C
Sbjct: 591 LCLYRPQGLRCACPIGFELISDMKTC 616
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 244 bits (624), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 169/590 (28%), Positives = 278/590 (47%), Gaps = 74/590 (12%)
Query: 51 KMFWSNVTKQVVTIEMAFMDGTKRETVVS-QKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
+++W++++ + TI AFM+G+ E VV YP +AVDW+ +N+YW+D
Sbjct: 48 RIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGT 99
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
N IEV++L GQ+R VL+ +D P ALA+DP G+++W+E G P I RA +DG ++T L
Sbjct: 100 NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 159
Query: 170 AQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVS----------TISMKPYG 219
+ +T+D ++ +L + ++I SN+ ++ + Y
Sbjct: 160 VPNVGRA-NGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ 215
Query: 220 D------------------------------SYLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
D Y+ DI ++ Q+G N C +NG C+
Sbjct: 216 DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 275
Query: 250 LCLYNGVSA-VCAC-AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS--DLNSPFE 305
LCL V VC C AH + D ++CS F+++S+ + I+ + + ++ D+ P
Sbjct: 276 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 335
Query: 306 SIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL---- 361
S+RN + + YD K L++ D ++ I +GS ++ + L
Sbjct: 336 SLRN------VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQP 389
Query: 362 ---AYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYW 418
+ + Y+YWTC IN LD + + VV G+ D+PR I ++ +Y+
Sbjct: 390 YDLSIDIYSRYIYWTCEATNVINVTRLD---GRSVGVVLKGEQDRPRAIVVNPEKGYMYF 446
Query: 419 TNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
TN P I+RA G E + + ++ P ALALD + KLFW D+ L +IE D G
Sbjct: 447 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 506
Query: 479 TNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVA 538
NRIVL + L P + V+ +++W D + + + E ++ I + I A
Sbjct: 507 ANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 566
Query: 539 ISD-NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
+ + NL + PC NG C IC + G CSC VL++D SC
Sbjct: 567 VKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 616
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 161/345 (46%), Gaps = 16/345 (4%)
Query: 278 DAFIMYSRVNRIDSIHM-TDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKG 336
+AF+++SR I I + T+ +++ P ++ ++ L +D ++++DI
Sbjct: 4 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASA------LDFDVTDNRIYWTDISLK 57
Query: 337 TINSVFFNGSNHRVLLE-RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
TI+ F NGS ++E EG+A +++ LYW D N+I++ Q V
Sbjct: 58 TISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWA---DTGTNRIEVSKLDGQHRQV 114
Query: 396 VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
+ D PR + +D + +YWT W P I RA G + + ++ N L +D
Sbjct: 115 LVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDG-SERTTLVPNVGRANGLTID 172
Query: 456 HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
+ +L+W D + IE + G NR V++ P HPF + Y ++I+WTDW ++ RA
Sbjct: 173 YAKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERA 231
Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCF 575
NK +G+ ++ ++ M I+ + + C NG+C +C G VC C
Sbjct: 232 NKTSGQNRTIIQGHLDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCP 290
Query: 576 TGKVLMEDNRSCTINTVCSEHDFKCS-DGMCIPFNQTCDRVYNCH 619
L DNR+C+ T K + + M I Q+ D + H
Sbjct: 291 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 335
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 115/266 (43%), Gaps = 60/266 (22%)
Query: 13 IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 72
I V L+G +L E + + +I V P KG M+++N+ ++ IE A +DGT
Sbjct: 411 INVTRLDGRSVGVVLKGEQD------RPRAIVVNPEKGYMYFTNLQERSPKIERAALDGT 464
Query: 73 KRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQ 132
+RE + + + + + +A+D ++W+D IE + L+G R VL + Q
Sbjct: 465 EREVL-----FFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQ 519
Query: 133 PSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYR 192
P L V +L+W +D ++Q I ++I M ++
Sbjct: 520 PVGLTV--FENWLYW-------------IDKQQQMI--EKIDMTGRE------------- 549
Query: 193 NLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCL 252
+K I LS++ V ++++ Y +PC +NGGC+ +CL
Sbjct: 550 GRTKVQARIAQLSDIHAVKELNLQEY-----------------RQHPCAQDNGGCSHICL 592
Query: 253 YNGVSAV-CACA-HGVVAQDGKSCSE 276
G C+C H V+ QD SC E
Sbjct: 593 VKGDGTTRCSCPMHLVLLQDELSCGE 618
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 169/590 (28%), Positives = 280/590 (47%), Gaps = 74/590 (12%)
Query: 51 KMFWSNVTKQVVTIEMAFMDGTKRETVVS-QKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
+++W++++ + TI AFM+G+ E VV YP +AVDW+ +N+YW+D
Sbjct: 55 RIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGT 106
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
N IEV++L GQ+R VL+ +D P ALA+DP G+++W+E G P I RA +DG ++T L
Sbjct: 107 NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 166
Query: 170 AQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMK-----PYGDS--- 221
+ +T+D ++ +L + ++I SN+ ++ + P+G +
Sbjct: 167 VPNVGRA-NGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ 222
Query: 222 --------------------------------YLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
Y+ DI ++ Q+G N C +NG C+
Sbjct: 223 DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 282
Query: 250 LCLYNGVSA-VCAC-AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS--DLNSPFE 305
LCL V VC C AH + D ++CS F+++S+ + I+ + + ++ D+ P
Sbjct: 283 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 342
Query: 306 SIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL---- 361
S+RN + + YD K L++ D ++ I +GS ++ + L
Sbjct: 343 SLRN------VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQP 396
Query: 362 ---AYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYW 418
+ + Y+YWTC IN LD + + VV G+ D+PR I ++ +Y+
Sbjct: 397 YDLSIDIYSRYIYWTCEATNVINVTRLD---GRSVGVVLKGEQDRPRAIVVNPEKGYMYF 453
Query: 419 TNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
TN P I+RA G E + + ++ P ALALD + KLFW D+ L +IE D G
Sbjct: 454 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 513
Query: 479 TNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVA 538
NRIVL + L P + V+ +++W D + + + E ++ I + I A
Sbjct: 514 ANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 573
Query: 539 ISD-NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
+ + NL + PC NG C IC + G CSC VL++D SC
Sbjct: 574 VKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 623
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 161/345 (46%), Gaps = 16/345 (4%)
Query: 278 DAFIMYSRVNRIDSIHM-TDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKG 336
+AF+++SR I I + T+ +++ P ++ ++ L +D ++++DI
Sbjct: 11 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASA------LDFDVTDNRIYWTDISLK 64
Query: 337 TINSVFFNGSNHRVLLE-RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
TI+ F NGS ++E EG+A +++ LYW D N+I++ Q V
Sbjct: 65 TISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWA---DTGTNRIEVSKLDGQHRQV 121
Query: 396 VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
+ D PR + +D + +YWT W P I RA G + + ++ N L +D
Sbjct: 122 LVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDG-SERTTLVPNVGRANGLTID 179
Query: 456 HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
+ +L+W D + IE + G NR V++ P HPF + Y ++I+WTDW ++ RA
Sbjct: 180 YAKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERA 238
Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCF 575
NK +G+ ++ ++ M I+ + + C NG+C +C G VC C
Sbjct: 239 NKTSGQNRTIIQGHLDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCP 297
Query: 576 TGKVLMEDNRSCTINTVCSEHDFKCS-DGMCIPFNQTCDRVYNCH 619
L DNR+C+ T K + + M I Q+ D + H
Sbjct: 298 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 342
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 114/264 (43%), Gaps = 60/264 (22%)
Query: 13 IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 72
I V L+G +L E + + +I V P KG M+++N+ ++ IE A +DGT
Sbjct: 418 INVTRLDGRSVGVVLKGEQD------RPRAIVVNPEKGYMYFTNLQERSPKIERAALDGT 471
Query: 73 KRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQ 132
+RE + + + + + +A+D ++W+D IE + L+G R VL + Q
Sbjct: 472 EREVL-----FFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQ 526
Query: 133 PSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYR 192
P L V +L+W +D ++Q I ++I M ++
Sbjct: 527 PVGLTV--FENWLYW-------------IDKQQQMI--EKIDMTGRE------------- 556
Query: 193 NLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCL 252
+K I LS++ V ++++ Y +PC +NGGC+ +CL
Sbjct: 557 GRTKVQARIAQLSDIHAVKELNLQEYRQ-----------------HPCAQDNGGCSHICL 599
Query: 253 YNGVSAV-CACA-HGVVAQDGKSC 274
G C+C H V+ QD SC
Sbjct: 600 VKGDGTTRCSCPMHLVLLQDELSC 623
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 168/590 (28%), Positives = 278/590 (47%), Gaps = 74/590 (12%)
Query: 51 KMFWSNVTKQVVTIEMAFMDGTKRETVVS-QKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
+++W++++ + TI AFM+G+ E VV YP +AVDW+ +N+YW+D
Sbjct: 50 RIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGT 101
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
N IEV++L GQ+R VL+ +D P ALA+DP G+++W+E G P I RA +DG ++T L
Sbjct: 102 NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 161
Query: 170 AQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVS----------TISMKPYG 219
+ +T+D ++ +L + ++I SN+ ++ + Y
Sbjct: 162 VPNVGRA-NGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ 217
Query: 220 D------------------------------SYLKDIKIYSKDAQTGTNPCGVNNGGCAE 249
D Y+ DI ++ Q+G N C +NG C+
Sbjct: 218 DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 277
Query: 250 LCLYNGVSA-VCAC-AHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKS--DLNSPFE 305
LCL V VC C AH + D ++CS F+++S+ + I+ + + ++ D+ P
Sbjct: 278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 337
Query: 306 SIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGL---- 361
S+RN + + YD K L++ D ++ I +GS ++ + L
Sbjct: 338 SLRN------VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQP 391
Query: 362 ---AYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYW 418
+ + Y+YWTC IN LD + + VV G+ D+PR + ++ +Y+
Sbjct: 392 YDLSIDIYSRYIYWTCEATNVINVTRLD---GRSVGVVLKGEQDRPRAVVVNPEKGYMYF 448
Query: 419 TNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
TN P I+RA G E + + ++ P ALALD + KLFW D+ L +IE D G
Sbjct: 449 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 508
Query: 479 TNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVA 538
NRIVL + L P + V+ +++W D + + + E ++ I + I A
Sbjct: 509 ANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 568
Query: 539 ISD-NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
+ + NL + PC NG C IC + G CSC VL++D SC
Sbjct: 569 VKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 618
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 161/345 (46%), Gaps = 16/345 (4%)
Query: 278 DAFIMYSRVNRIDSIHM-TDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKG 336
+AF+++SR I I + T+ +++ P ++ ++ L +D ++++DI
Sbjct: 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASA------LDFDVTDNRIYWTDISLK 59
Query: 337 TINSVFFNGSNHRVLLE-RQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
TI+ F NGS ++E EG+A +++ LYW D N+I++ Q V
Sbjct: 60 TISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWA---DTGTNRIEVSKLDGQHRQV 116
Query: 396 VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
+ D PR + +D + +YWT W P I RA G + + ++ N L +D
Sbjct: 117 LVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDG-SERTTLVPNVGRANGLTID 174
Query: 456 HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
+ +L+W D + IE + G NR V++ P HPF + Y ++I+WTDW ++ RA
Sbjct: 175 YAKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERA 233
Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCF 575
NK +G+ ++ ++ M I+ + + C NG+C +C G VC C
Sbjct: 234 NKTSGQNRTIIQGHLDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVPVGGFVCGCP 292
Query: 576 TGKVLMEDNRSCTINTVCSEHDFKCS-DGMCIPFNQTCDRVYNCH 619
L DNR+C+ T K + + M I Q+ D + H
Sbjct: 293 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 337
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 60/264 (22%)
Query: 13 IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 72
I V L+G +L E + + ++ V P KG M+++N+ ++ IE A +DGT
Sbjct: 413 INVTRLDGRSVGVVLKGEQD------RPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT 466
Query: 73 KRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQ 132
+RE + + + + + +A+D ++W+D IE + L+G R VL + Q
Sbjct: 467 EREVL-----FFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQ 521
Query: 133 PSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYR 192
P L V +L+W +D ++Q I ++I M ++
Sbjct: 522 PVGLTV--FENWLYW-------------IDKQQQMI--EKIDMTGRE------------- 551
Query: 193 NLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCL 252
+K I LS++ V ++++ Y +PC +NGGC+ +CL
Sbjct: 552 GRTKVQARIAQLSDIHAVKELNLQEYRQ-----------------HPCAQDNGGCSHICL 594
Query: 253 YNGVSAV-CACA-HGVVAQDGKSC 274
G C+C H V+ QD SC
Sbjct: 595 VKGDGTTRCSCPMHLVLLQDELSC 618
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 168 bits (426), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 7/278 (2%)
Query: 313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN--HRVLLERQGSVEGLAYEYVHNYL 370
+++ + + + +++SD+ + I FN + V++ S +GLA +++ L
Sbjct: 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 93
Query: 371 YWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR 430
YWT D+ N+I++ + V+ + D+PR I +D +YWT+W +P I+R
Sbjct: 94 YWT---DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIER 149
Query: 431 AFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPL 490
A G II ++I PN L LD++ +KL+W DA+L+ I + + DGTNR + K S
Sbjct: 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 209
Query: 491 HPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTP 550
HPF + ++ + ++WTDW H++L NKYTGE + + +I PM I A S A P
Sbjct: 210 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 269
Query: 551 CRHLNGNCDDICKLDETGQVV-CSCFTGKVLMEDNRSC 587
C NG C +C + C+C TG L+E+ ++C
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 307
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 48/269 (17%)
Query: 50 GKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
G ++WS+V+++ + + + VVS P AC DW+ + +YW+D +
Sbjct: 47 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC------DWLGEKLYWTDSET 100
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
N IEV+ L G R VL +DQP A+A+DP SG+++W++ G++P I RAG+DG + I+
Sbjct: 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 160
Query: 170 AQEIIMPIKDITLD-----LKFFSAFYRNLSKGNI--------------HIISLSNLSDV 210
I +TLD L + A + K N+ H +L+ D+
Sbjct: 161 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI 220
Query: 211 ---------STISMKPYGDSYLK----------DIKIYSKDAQ-TGTNPCGVNNGGCAEL 250
S ++ Y L+ DI +S+ Q TNPCG++NGGC+ L
Sbjct: 221 LYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHL 280
Query: 251 CLYNGVSAV--CACAHGV-VAQDGKSCSE 276
CL + V CAC GV + ++GK+C +
Sbjct: 281 CLMSPVKPFYQCACPTGVKLLENGKTCKD 309
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 168 bits (425), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 149/278 (53%), Gaps = 7/278 (2%)
Query: 313 MKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN--HRVLLERQGSVEGLAYEYVHNYL 370
+++ + + + +++SD+ + I FN + V++ S +GLA +++ L
Sbjct: 31 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 90
Query: 371 YWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR 430
YWT D+ N+I++ + V+ + D+PR I +D +YWT+W +P I+R
Sbjct: 91 YWT---DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIER 146
Query: 431 AFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPL 490
A G II ++I PN L LD++ +KL+W DA+L+ I + + DGTNR + K S
Sbjct: 147 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 206
Query: 491 HPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTP 550
HPF + ++ + ++WTDW H++L NKYTGE + + +I PM I A S A P
Sbjct: 207 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 266
Query: 551 CRHLNGNCDDICKLDETGQVV-CSCFTGKVLMEDNRSC 587
C NG C +C + C+C TG L+E+ ++C
Sbjct: 267 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 304
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 48/269 (17%)
Query: 50 GKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
G ++WS+V+++ + + + VVS P AC DW+ + +YW+D +
Sbjct: 44 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC------DWLGEKLYWTDSET 97
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
N IEV+ L G R VL +DQP A+A+DP SG+++W++ G++P I RAG+DG + I+
Sbjct: 98 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 157
Query: 170 AQEIIMPIKDITLD-----LKFFSAFYRNLSKGNI--------------HIISLSNLSDV 210
I +TLD L + A + K N+ H +L+ D+
Sbjct: 158 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI 217
Query: 211 ---------STISMKPYGDSYLK----------DIKIYSKDAQ-TGTNPCGVNNGGCAEL 250
S ++ Y L+ DI +S+ Q TNPCG++NGGC+ L
Sbjct: 218 LYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHL 277
Query: 251 CLYNGVSAV--CACAHGV-VAQDGKSCSE 276
CL + V CAC GV + ++GK+C +
Sbjct: 278 CLMSPVKPFYQCACPTGVKLLENGKTCKD 306
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 175/381 (45%), Gaps = 44/381 (11%)
Query: 235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYD--------------- 278
TG C VNNGGCA+ C + C C G + +DG++C + +
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 279 --AFIMYSRVN---RIDS-----------IHMTDKSDLNSPFESIRNSTMM----KNIIE 318
AF + R D + ++ D+ T++ +N I
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 319 LSYDYKRKTLFYSDIQKGTINSVFFNGSN-HRVLLERQGSVEGLAYEYVHNYLYWTCNND 377
L + ++R+ +F+SD+ I NGSN V+ S GLA ++VH+ LYWT +
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 180
Query: 378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG 437
+ I +LD + ++ L +KPR I + + IYWT+W + P I+ + G G
Sbjct: 181 SRIEVANLDGAHRKVLLWQSL---EKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSG 236
Query: 438 TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR-IVLSKISPLHPFDMA 496
I T + PN L +D+ +++W DA+ IER + DG++R V+S+ P HPF +
Sbjct: 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-HPFAIT 295
Query: 497 VYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNG 556
V+ + ++WTDW ++ ANK+TG+ +R + PM I + K C NG
Sbjct: 296 VFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNG 355
Query: 557 NCDDICKLDETGQVVCSCFTG 577
C +C L C+C TG
Sbjct: 356 GCTHLC-LPSGQNYTCACPTG 375
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 118/269 (43%), Gaps = 56/269 (20%)
Query: 52 MFWSNVTKQVVTIEMAFMDGTKRETVVSQK-KYPAVTACNLHIAVDWIAQNIYWSDPKEN 110
+FWS+VT + I A ++G+ E VVS + P +AVDW+ +YW+D +
Sbjct: 130 VFWSDVT--LDRILRANLNGSNVEEVVSTGLESPGG------LAVDWVHDKLYWTDSGTS 181
Query: 111 VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILA 170
IEVA L G +R VL+ +++P A+A+ P G ++W++ G P I + +DG + I+A
Sbjct: 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA 241
Query: 171 QEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD------VSTISMKPYGDSYLK 224
+ +T+D ++ + H+I +NL +S P+ + +
Sbjct: 242 DTHLFWPNGLTIDYAGRRMYWVDAKH---HVIERANLDGSHRKAVISQGLPHPFAITVFE 298
Query: 225 DIKIYSKDAQT-------------------------------------GTNPCGVNNGGC 247
D +Y D T G N CG NNGGC
Sbjct: 299 D-SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGC 357
Query: 248 AELCLYNGVSAVCACAHGVVAQDGKSCSE 276
LCL +G + CAC G + +C++
Sbjct: 358 THLCLPSGQNYTCACPTGFRKINSHACAQ 386
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 555 NGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG 603
NG C C++ G V C+C TG L ED R+C C+E + CS G
Sbjct: 10 NGGCAQKCQMIR-GAVQCTCHTGYRLTEDGRTCQDVNECAEEGY-CSQG 56
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 164/336 (48%), Gaps = 14/336 (4%)
Query: 245 GGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSP 303
G C++ C + + C C G + D +SC + NRID + S
Sbjct: 8 GYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH---RSE 64
Query: 304 FESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSN-HRVLLERQGSVEGLA 362
+ + N+ ++N I L + ++R+ +F+SD+ I NGSN V+ S GLA
Sbjct: 65 YTLLLNN--LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 122
Query: 363 YEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWN 422
++VH+ LYWT + + I +LD + ++ L +KPR I + + IYWT+W
Sbjct: 123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL---EKPRAIALHPMEGTIYWTDWG 179
Query: 423 SHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR- 481
+ P I+ + G G I T + PN L +D+ +++W DA+ IER + DG++R
Sbjct: 180 N-TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238
Query: 482 IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISD 541
V+S+ P HPF + V+ + ++WTDW ++ ANK+TG+ +R + PM I +
Sbjct: 239 AVISQGLP-HPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 297
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTG 577
K C NG C +C L C+C TG
Sbjct: 298 QRQPAGKNRCGDNNGGCTHLC-LPSGQNYTCACPTG 332
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 117/268 (43%), Gaps = 56/268 (20%)
Query: 52 MFWSNVTKQVVTIEMAFMDGTKRETVVSQK-KYPAVTACNLHIAVDWIAQNIYWSDPKEN 110
+FWS+VT + I A ++G+ E VVS + P +AVDW+ +YW+D +
Sbjct: 87 VFWSDVT--LDRILRANLNGSNVEEVVSTGLESPGG------LAVDWVHDKLYWTDSGTS 138
Query: 111 VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILA 170
IEVA L G +R VL+ +++P A+A+ P G ++W++ G P I + +DG + I+A
Sbjct: 139 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA 198
Query: 171 QEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSD------VSTISMKPYGDSYLK 224
+ +T+D ++ + H+I +NL +S P+ + +
Sbjct: 199 DTHLFWPNGLTIDYAGRRMYWVDAKH---HVIERANLDGSHRKAVISQGLPHPFAITVFE 255
Query: 225 DIKIYSKDAQT-------------------------------------GTNPCGVNNGGC 247
D +Y D T G N CG NNGGC
Sbjct: 256 D-SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGC 314
Query: 248 AELCLYNGVSAVCACAHGVVAQDGKSCS 275
LCL +G + CAC G + +C+
Sbjct: 315 THLCLPSGQNYTCACPTGFRKINSHACA 342
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 170/360 (47%), Gaps = 31/360 (8%)
Query: 247 CAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAFIMYSRVNRIDSIHMT-DKSDLNSPF 304
C++LC+ C C G + K+C + NR + MT D+S+ S
Sbjct: 49 CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI 108
Query: 305 ESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLLERQ-GSVE 359
++RN ++ L + +++SD+ + I S + S++ ++ R + +
Sbjct: 109 PNLRN------VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162
Query: 360 GLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWT 419
GLA +++H+ +YWT D+ + + + K + + KPR I +D +YWT
Sbjct: 163 GLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 219
Query: 420 NWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGT 479
+W + I++ +G S++T +I PN + LD + +L+W D++L I D +G
Sbjct: 220 DWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278
Query: 480 NR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIV 537
NR I+ + HPF +AV+ + +FWTD + A+ AN+ TG +V L +N+ P +V
Sbjct: 279 NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338
Query: 538 AISD-----NLDACAKTPCRHLNGNCDDICKL-----DETGQVVCSCFTGKVLMEDNRSC 587
+ ++ C +T NG C +C + + C+C G +L D RSC
Sbjct: 339 LFHNLTQPRGVNWCERTTLS--NGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 126/306 (41%), Gaps = 64/306 (20%)
Query: 21 EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVV-TIEMAFMDGTKRETVVS 79
EY T+++ N N + ++++S +++WS+++++++ + ++ G V
Sbjct: 103 EY-TSLIPNLRNVVALDTEVAS-------NRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154
Query: 80 QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 139
+ A +AVDWI NIYW+D + VA G R L +P A+ VD
Sbjct: 155 SRDIQAPDG----LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 210
Query: 140 PESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDL----------KFFSA 189
P G+++W++ G I + GL+G L E I ITLDL K S
Sbjct: 211 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270
Query: 190 FYRNLSKGNIHIISLSNLSDVSTISMKPYGDS-YLKDI---KIYSKDAQTG--------- 236
+++ GN I S+ + D + DI I+S + TG
Sbjct: 271 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330
Query: 237 -------------TNPCGVN--------NGGCAELCL------YNGVSAVCACAHG-VVA 268
T P GVN NGGC LCL + CAC G ++A
Sbjct: 331 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 390
Query: 269 QDGKSC 274
+D +SC
Sbjct: 391 RDMRSC 396
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 193/426 (45%), Gaps = 76/426 (17%)
Query: 224 KDIKIYSKDA--QTGTNPCGVNNGGCAELCLYNGVSAVCACAHG--VVAQ---------- 269
+D + +S + + GTN C NNGGC+ +C + C C G +VAQ
Sbjct: 25 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 84
Query: 270 DGKSCSEY------------------------------DAFIMYSRVNRIDSIHMT-DKS 298
D +CS+ A++ ++ NR + MT D+S
Sbjct: 85 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT--NRHEVRKMTLDRS 142
Query: 299 DLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLLER 354
+ S ++RN ++ L + +++SD+ + I S + S++ ++ R
Sbjct: 143 EYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 196
Query: 355 Q-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD 413
+ +GLA +++H+ +YWT D+ + + + K + + KPR I +D
Sbjct: 197 DIQAPDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 253
Query: 414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIER 473
+YWT+W + I++ +G S++T +I PN + LD + +L+W D++L I
Sbjct: 254 GFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 312
Query: 474 CDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIR 531
D +G NR I+ + HPF +AV+ + +FWTD + A+ AN+ TG +V L +N+
Sbjct: 313 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 372
Query: 532 RPMGIVAISD-----NLDACAKTPCRHLNGNCDDICKL-----DETGQVVCSCFTGKVLM 581
P +V + ++ C +T NG C +C + + C+C G +L
Sbjct: 373 SPEDMVLFHNLTQPRGVNWCERTTLS--NGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 430
Query: 582 EDNRSC 587
D RSC
Sbjct: 431 RDMRSC 436
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 126/306 (41%), Gaps = 64/306 (20%)
Query: 21 EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVV-TIEMAFMDGTKRETVVS 79
EY T+++ N N + ++++S +++WS+++++++ + ++ G V
Sbjct: 143 EY-TSLIPNLRNVVALDTEVAS-------NRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 194
Query: 80 QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 139
+ A +AVDWI NIYW+D + VA G R L +P A+ VD
Sbjct: 195 SRDIQAPDG----LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 250
Query: 140 PESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDL----------KFFSA 189
P G+++W++ G I + GL+G L E I ITLDL K S
Sbjct: 251 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 310
Query: 190 FYRNLSKGNIHIISLSNLSDVSTISMKPYGDS-YLKDI---KIYSKDAQTG--------- 236
+++ GN I S+ + D + DI I+S + TG
Sbjct: 311 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 370
Query: 237 -------------TNPCGVN--------NGGCAELCL------YNGVSAVCACAHG-VVA 268
T P GVN NGGC LCL + CAC G ++A
Sbjct: 371 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 430
Query: 269 QDGKSC 274
+D +SC
Sbjct: 431 RDMRSC 436
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 598 FKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDC 634
FKC G CI ++ C+ +C D SDE I C +C
Sbjct: 7 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNEC 43
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/426 (25%), Positives = 193/426 (45%), Gaps = 76/426 (17%)
Query: 224 KDIKIYSKDA--QTGTNPCGVNNGGCAELCLYNGVSAVCACAHG--VVAQ---------- 269
+D + +S + + GTN C NNGGC+ +C + C C G +VAQ
Sbjct: 279 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 338
Query: 270 DGKSCSEYD------------------------------AFIMYSRVNRIDSIHMT-DKS 298
D +CS+ A++ ++ NR + MT D+S
Sbjct: 339 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT--NRHEVRKMTLDRS 396
Query: 299 DLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLLER 354
+ S ++RN ++ L + +++SD+ + I S + S++ ++ R
Sbjct: 397 EYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450
Query: 355 Q-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD 413
+ +GLA +++H+ +YWT D+ + + + K + + Q KPR I +D
Sbjct: 451 DIQAPDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVH 507
Query: 414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIER 473
+YWT+W + I++ +G S++T +I PN + LD + +L+W D++L I
Sbjct: 508 GFMYWTDWGTPA-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566
Query: 474 CDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIR 531
D +G NR I+ + HPF +AV+ + +FWTD + A+ AN+ TG +V L +N+
Sbjct: 567 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 626
Query: 532 RPMGIVAISD-----NLDACAKTPCRHLNGNCDDICKL-----DETGQVVCSCFTGKVLM 581
P +V ++ C +T NG C +C + + C+C G +L
Sbjct: 627 SPEDMVLFHQLTQPRGVNWCERT--TLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 684
Query: 582 EDNRSC 587
D RSC
Sbjct: 685 RDMRSC 690
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 131/314 (41%), Gaps = 65/314 (20%)
Query: 21 EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVV-TIEMAFMDGTKRETVVS 79
EY T+++ N N + ++++S +++WS+++++++ + ++ G V
Sbjct: 397 EY-TSLIPNLRNVVALDTEVAS-------NRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 448
Query: 80 QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 139
+ A +AVDWI NIYW+D + VA G R L +P A+ VD
Sbjct: 449 SRDIQAPDG----LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVD 504
Query: 140 PESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDL----------KFFSA 189
P G+++W++ G I + GL+G L E I ITLDL K S
Sbjct: 505 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564
Query: 190 FYRNLSKGNIHIISLSNLSDVSTISMKPYGDS-YLKDI---KIYSKDAQTG--------- 236
+++ GN I S+ + D + DI I+S + TG
Sbjct: 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 624
Query: 237 -------------TNPCGVN--------NGGCAELCL------YNGVSAVCACAHG-VVA 268
T P GVN NGGC LCL + CAC G ++A
Sbjct: 625 LLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 684
Query: 269 QDGKSC-SEYDAFI 281
+D +SC +E +A +
Sbjct: 685 RDMRSCLTEAEAAV 698
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 583 DNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE-GILYCAMRDCRPGYFKC 641
D +C + T C +F+CSDG CI ++ CDR Y+C D SDE G + + + P FKC
Sbjct: 206 DEENCAVAT-CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE-GPNKFKC 263
Query: 642 DNNKCI 647
+ +CI
Sbjct: 264 HSGECI 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 583 DNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCD 642
D + C T CS+ +F+C DG CI CD +C D SDE C + C P F+C+
Sbjct: 79 DEQGCPPKT-CSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA--SCPVLTCGPASFQCN 135
Query: 643 NNKCI 647
++ CI
Sbjct: 136 SSTCI 140
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILS 649
++ CS +F C G CI + CD +C DKSDE CA+ CRP F+C + CI
Sbjct: 173 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQCSDGNCIHG 230
Query: 650 SH 651
S
Sbjct: 231 SR 232
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 588 TINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NK 645
+ C ++F+C DG CI + CD C D SDE C C+ G F C N+
Sbjct: 1 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNR 60
Query: 646 CI 647
CI
Sbjct: 61 CI 62
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 581 MEDNRSCTINTVC-SEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDC 634
M D C T+C + FKC G CI ++ C+ +C D SDE I C +C
Sbjct: 243 MSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNEC 297
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 582 EDNRSCTINTVCSEHDFKCSDGM--CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYF 639
E +C ++ C DF C + CIP CD +C + SDE C + C F
Sbjct: 37 ESQETC-LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE--QGCPPKTCSQDEF 93
Query: 640 KCDNNKCI 647
+C + KCI
Sbjct: 94 RCHDGKCI 101
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 569 QVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILY 628
Q VC + D SC + T C F+C+ CIP CD +C D SDE
Sbjct: 104 QFVCDSDRDCLDGSDEASCPVLT-CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 162
Query: 629 CA--------MRDCRPGYFKCDNNKCILSS 650
C C F C + +CI SS
Sbjct: 163 CRGLYVFQGDSSPCSAFEFHCLSGECIHSS 192
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 193/426 (45%), Gaps = 76/426 (17%)
Query: 224 KDIKIYSKDA--QTGTNPCGVNNGGCAELCLYNGVSAVCACAHG--VVAQ---------- 269
+D + +S + + GTN C NNGGC+ +C + C C G +VAQ
Sbjct: 297 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 356
Query: 270 DGKSCSEYD------------------------------AFIMYSRVNRIDSIHMT-DKS 298
D +CS+ A++ ++ NR + MT D+S
Sbjct: 357 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT--NRHEVRKMTLDRS 414
Query: 299 DLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNG----SNHRVLLER 354
+ S ++RN ++ L + +++SD+ + I S + S++ ++ R
Sbjct: 415 EYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 468
Query: 355 Q-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCD 413
+ +GLA +++H+ +YWT D+ + + + K + + KPR I +D
Sbjct: 469 DIQAPDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 525
Query: 414 SRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIER 473
+YWT+W + I++ +G S++T +I PN + LD + +L+W D++L I
Sbjct: 526 GFMYWTDWGTPA-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584
Query: 474 CDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIR 531
D +G NR I+ + HPF +AV+ + +FWTD + A+ AN+ TG +V L +N+
Sbjct: 585 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL 644
Query: 532 RPMGIVAISD-----NLDACAKTPCRHLNGNCDDICKL-----DETGQVVCSCFTGKVLM 581
P +V + ++ C +T NG C +C + + C+C G +L
Sbjct: 645 SPEDMVLFHNLTQPRGVNWCERTTLS--NGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 702
Query: 582 EDNRSC 587
D RSC
Sbjct: 703 RDMRSC 708
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 119/292 (40%), Gaps = 57/292 (19%)
Query: 51 KMFWSNVTKQVV-TIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKE 109
+++WS+++++++ + ++ G V + A +AVDWI NIYW+D
Sbjct: 437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG----LAVDWIHSNIYWTDSVL 492
Query: 110 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 169
+ VA G R L +P A+ VDP G+++W++ G I + GL+G L
Sbjct: 493 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552
Query: 170 AQEIIMPIKDITLDL----------KFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYG 219
E I ITLDL K S +++ GN I S+ +
Sbjct: 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE 612
Query: 220 DS-YLKDI---KIYSKDAQTG----------------------TNPCGVN--------NG 245
D + DI I+S + TG T P GVN NG
Sbjct: 613 DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNG 672
Query: 246 GCAELCL------YNGVSAVCACAHG-VVAQDGKSC-SEYDAFIMYSRVNRI 289
GC LCL + CAC G ++A+D +SC +E +A + + +
Sbjct: 673 GCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTV 724
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 583 DNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE-GILYCAMRDCRPGYFKC 641
D +C + T C +F+CSDG CI ++ CDR Y+C D SDE G + + + P FKC
Sbjct: 224 DEENCAVAT-CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE-GPNKFKC 281
Query: 642 DNNKCI 647
+ +CI
Sbjct: 282 HSGECI 287
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 583 DNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCD 642
D + C T CS+ +F+C DG CI CD +C D SDE C + C P F+C+
Sbjct: 97 DEQGCPPKT-CSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA--SCPVLTCGPASFQCN 153
Query: 643 NNKCI 647
++ CI
Sbjct: 154 SSTCI 158
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILS 649
++ CS +F C G CI + CD +C DKSDE CA+ CRP F+C + CI
Sbjct: 191 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQCSDGNCIHG 248
Query: 650 SH 651
S
Sbjct: 249 SR 250
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKCI 647
C ++F+C DG CI + CD C D SDE C C+ G F C N+CI
Sbjct: 24 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCI 80
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 581 MEDNRSCTINTVC-SEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDC 634
M D C T+C + FKC G CI ++ C+ +C D SDE I C +C
Sbjct: 261 MSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNEC 315
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 582 EDNRSCTINTVCSEHDFKCSDGM--CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYF 639
E +C ++ C DF C + CIP CD +C + SDE C + C F
Sbjct: 55 ESQETC-LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE--QGCPPKTCSQDEF 111
Query: 640 KCDNNKCI 647
+C + KCI
Sbjct: 112 RCHDGKCI 119
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 569 QVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILY 628
Q VC + D SC + T C F+C+ CIP CD +C D SDE
Sbjct: 122 QFVCDSDRDCLDGSDEASCPVLT-CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 180
Query: 629 CA--------MRDCRPGYFKCDNNKCILSS 650
C C F C + +CI SS
Sbjct: 181 CRGLYVFQGDSSPCSAFEFHCLSGECIHSS 210
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 161/327 (49%), Gaps = 32/327 (9%)
Query: 279 AFIMYSRVNRIDSIHMT-DKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGT 337
A++ ++ NR + MT D+S+ S ++RN ++ L + +++SD+ +
Sbjct: 2 AYLFFT--NRHEVRKMTLDRSEYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRM 53
Query: 338 INSVFFNG----SNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQR 392
I S + S++ ++ R + +GLA +++H+ +YWT D+ + + + K +
Sbjct: 54 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVK 110
Query: 393 IVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNAL 452
+ KPR I +D +YWT+W + I++ +G S++T +I PN +
Sbjct: 111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGI 169
Query: 453 ALDHQAEKLFWGDARLDKIERCDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIH 510
LD + +L+W D++L I D +G NR I+ + HPF +AV+ + +FWTD +
Sbjct: 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE 229
Query: 511 AVLRANKYTGEEVYTLRKNIRRPMGIVAISD-----NLDACAKTPCRHLNGNCDDICKL- 564
A+ AN+ TG +V L +N+ P +V + ++ C +T NG C +C
Sbjct: 230 AIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLS--NGGCQYLCLPA 287
Query: 565 ----DETGQVVCSCFTGKVLMEDNRSC 587
+ + C+C G +L D RSC
Sbjct: 288 PQINPHSPKFTCACPDGMLLARDMRSC 314
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 126/309 (40%), Gaps = 63/309 (20%)
Query: 18 LEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVV-TIEMAFMDGTKRET 76
L+ T+++ N N + ++++S +++WS+++++++ + ++ G
Sbjct: 17 LDRSEYTSLIPNLRNVVALDTEVAS-------NRIYWSDLSQRMICSTQLDRAHGVSSYD 69
Query: 77 VVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSAL 136
V + A +AVDWI NIYW+D + VA G R L +P A+
Sbjct: 70 TVISRDIQAPDG----LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 125
Query: 137 AVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDL----------KF 186
VDP G+++W++ G I + GL+G L E I ITLDL K
Sbjct: 126 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185
Query: 187 FSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDS-YLKDI---KIYSKDAQTG------ 236
S +++ GN I S+ + D + DI I+S + TG
Sbjct: 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245
Query: 237 ----------------TNPCGVN--------NGGCAELCL------YNGVSAVCACAHG- 265
T P GVN NGGC LCL + CAC G
Sbjct: 246 AENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 305
Query: 266 VVAQDGKSC 274
++A+D +SC
Sbjct: 306 LLARDMRSC 314
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 109/216 (50%), Gaps = 9/216 (4%)
Query: 314 KNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYW 372
K II L++D K ++++DI + +I +G ++ + GS EG+A +++ ++W
Sbjct: 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFW 95
Query: 373 TCNNDATINKIDLDSPKA-QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRA 431
T D+ +++I++ QR V+ G + PRGI D +YWT+WN P I+ +
Sbjct: 96 T---DSQLDRIEVAKMDGTQRRVLFDTGLVN-PRGIVTDPVRGNLYWTDWNRDNPKIETS 151
Query: 432 FFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCD-YDGTNRIVLSKISPL 490
G + ++ +PN L D + +L W DA + E + R VL +
Sbjct: 152 HMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-- 209
Query: 491 HPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTL 526
+PF + YG+ +++TDW ++V+ + +E+ T
Sbjct: 210 YPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTF 245
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 52 MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENV 111
++W+++++ +I A + G + T++ Q IA+D + + I+W+D + +
Sbjct: 50 VYWTDISEP--SIGRASLHGGEPTTIIRQD-----LGSPEGIALDHLGRTIFWTDSQLDR 102
Query: 112 IEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKI-PLIARAGLDGKKQTILA 170
IEVA++ G R VL G+ P + DP G L+W++ + P I + +DG + ILA
Sbjct: 103 IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA 162
Query: 171 QEIIMPIKDITLD 183
Q+ + +T D
Sbjct: 163 QDNLGLPNGLTFD 175
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 152
+A D + + +YW+D E I A L G +I + P +A+D +FW++S +
Sbjct: 41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS-Q 99
Query: 153 IPLIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHI 201
+ I A +DG ++ +L ++ + I D + ++ + ++ N I
Sbjct: 100 LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 12 KIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG 71
+I V ++G + + + L I PV+G ++W++ + IE + MDG
Sbjct: 102 RIEVAKMDGTQRRVLFD------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155
Query: 72 TKRETVVS 79
T R +
Sbjct: 156 TNRRILAQ 163
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 588 TINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NK 645
+ C ++F+C DG CI + CD C D SDE C C+ G F C N+
Sbjct: 3 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNR 62
Query: 646 CI 647
CI
Sbjct: 63 CI 64
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRP-GYFKCDNNKCI 647
C + F C+ G CIP + TCD +C D+SDE CA C P F C+N +CI
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDES-ASCAYPTCFPLTQFTCNNGRCI 59
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
CS+ +F+C DG CI CD +C D SDE C + C P F+C+++ CI
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEA--SCPVLTCGPASFQCNSSTCI 55
>pdb|1KIG|L Chain L, Bovine Factor Xa
Length = 51
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAF 280
C ++NGGC + C C+CAHG V+ D KSC + F
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG CD C+ +E +V CSC G VL +D++SC
Sbjct: 1 CSLDNGGCDQFCR-EERSEVRCSCAHGYVLGDDSKSC 36
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 591 TVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
C +F+CSDG CI ++ CDR Y+C D SDE
Sbjct: 2 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDE 35
>pdb|1F8Z|A Chain A, Nmr Structure Of The Sixth Ligand-Binding Module Of The
Ldl Receptor
Length = 39
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 592 VCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
C +F+CSDG CI ++ CDR Y+C D SDE
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG C CK +V+CSC TG L D +SC
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
>pdb|2WPH|E Chain E, Factor Ixa Superactive Triple Mutant
pdb|2WPI|E Chain E, Factor Ixa Superactive Double Mutant
pdb|2WPJ|E Chain E, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|E Chain E, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|E Chain E, Factor Ixa Superactive Triple Mutant, Edta-Soaked
pdb|2WPM|E Chain E, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 59
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG C+ CK +VVCSC G L E+ +SC
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 35.8 bits (81), Expect = 0.078, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 46 CSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKAC 81
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
N + + C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 37 NCELFTRKLCSLDNGDCDQFCH-EEQASVVCSCARGYTLADNGKAC 81
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 588 TINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC 629
+ C ++F+C DG CI + CD C D SDE C
Sbjct: 3 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 44
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
N + + C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 75 NCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 119
>pdb|3KL6|B Chain B, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
Length = 57
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 547 AKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
A+ C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 3 ARKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 42
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 7 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 42
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 44 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
N + + C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 35 NCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 79
>pdb|2GD4|L Chain L, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|A Chain A, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 58
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 5 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 40
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
N + + C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 75 NCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 119
>pdb|2BOK|L Chain L, Factor Xa- Cation
pdb|2JKH|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|L Chain L, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBW|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 55
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 4 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 39
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 45 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
N + + C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 36 NCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 80
>pdb|2Y5F|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|L Chain L, Factor Xa - Cation Inhibitor Complex
Length = 54
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 3 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 38
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 44 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
N + + C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 35 NCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 79
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 46 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 81
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
N + + C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 37 NCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 81
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 89 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 124
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
N + + C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 80 NCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 124
>pdb|2D1J|B Chain B, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2P3F|L Chain L, Crystal Structure Of The Factor XaNAP5 COMPLEX
pdb|2EI6|B Chain B, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|B Chain B, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|B Chain B, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|B Chain B, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|B Chain B, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|B Chain B, Factor Xa In Complex With D102-4380
pdb|3TK6|B Chain B, Factor Xa In Complex With D46-5241
Length = 54
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 5 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 40
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 45 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
N + + C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 36 NCELFTRKLCSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 80
>pdb|2BMG|A Chain A, Crystal Structure Of Factor Xa In Complex With 50
Length = 53
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 4 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 39
>pdb|1MQ5|L Chain L, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|L Chain L, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|2W26|B Chain B, Factor Xa In Complex With Bay59-7939
Length = 51
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 3 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 38
>pdb|1FJS|L Chain L, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1V3X|B Chain B, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|2FZZ|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|L Chain L, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|L Chain L, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|L Chain L, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2P16|L Chain L, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2P3U|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|3CEN|L Chain L, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|L Chain L, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3FFG|L Chain L, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|L Chain L, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|L Chain L, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|L Chain L, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3M36|L Chain L, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|L Chain L, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
pdb|1Z6E|L Chain L, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
Length = 52
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 3 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 38
>pdb|2PR3|B Chain B, Factor Xa Inhibitor
pdb|2Q1J|B Chain B, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2PHB|B Chain B, An Orally Efficacious Factor Xa Inhibitor
pdb|2W3I|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3LIW|B Chain B, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
Length = 51
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 37
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 2 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 37
>pdb|2BQ6|A Chain A, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|A Chain A, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 52
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 4 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 39
>pdb|1HCG|B Chain B, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
Length = 51
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 1 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 36
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 1 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 36
>pdb|2RA0|L Chain L, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
Length = 51
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
C ++NG C + C S VC+CA G +A +GK+C
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 37
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 2 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKAC 37
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 593 CSEHDFKCS-DGMCIPFNQTCDRVYNCHDKSDE 624
C +F+C DG+CIP CD +C D SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMR 632
CS FKC+ G CIP + TCD +C D SDE C +
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 593 CSEHDFKCSDGM-CIPFNQTCDRVYNCHDKSDE 624
C+ FKC+DG CI CD VY+C D SDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
>pdb|1RFN|B Chain B, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|B Chain B, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|D Chain D, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|B Chain B, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 57
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG C+ CK +VVCSC G L E+ +SC
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 39
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG C CK +V+CSC TG L D +SC
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 436 FGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYD----GTNRIVLSKISPLH 491
+ ++S +T +IT+P+ + KL++ L+ C+YD T VL+
Sbjct: 21 YPSDSEVTWNITVPDGFRI-----KLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRE 75
Query: 492 PFDMA-VYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVA--ISDNLDACAK 548
D G+ + + ++ + ++ EE +T G A ++ ++D C +
Sbjct: 76 TTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFT---------GFDAHYMAVDVDECKE 126
Query: 549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGM 604
L+ CD C + G CSC G +L DNR+C + CS++ F G+
Sbjct: 127 REDEELS--CDHYCH-NYIGGYYCSCRFGYILHTDNRTCRVE--CSDNLFTQRTGV 177
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 436 FGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYD----GTNRIVLSKISPLH 491
+ ++S +T +IT+P+ + KL++ L+ C+YD T VL+
Sbjct: 21 YPSDSEVTWNITVPDGFRI-----KLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRE 75
Query: 492 PFDMA-VYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVA--ISDNLDACAK 548
D G+ + + ++ + ++ EE +T G A ++ ++D C +
Sbjct: 76 TTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFT---------GFDAHYMAVDVDECKE 126
Query: 549 TPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGM 604
L+ CD C + G CSC G +L DNR+C + CS++ F G+
Sbjct: 127 REDEELS--CDHYCH-NYIGGYYCSCRFGYILHTDNRTCRVE--CSDNLFTQRTGV 177
>pdb|3KCG|L Chain L, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 59
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG C+ CK +VVCSC G L E+ +SC
Sbjct: 5 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 41
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 598 FKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDC 634
FKC G CI ++ C+ +C D SDE I C +C
Sbjct: 12 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNEC 48
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating
Length = 37
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
CS +F C G CI + CD +C DKSDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD 278
GTN C NNGGC+ +C + C C G + C + D
Sbjct: 28 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 70
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD 278
GTN C NNGGC+ +C + C C G + C + D
Sbjct: 4 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 46
>pdb|1PNS|R Chain R, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
pdb|1PNX|R Chain R, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
pdb|1VOQ|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOS|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOV|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOX|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOZ|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1X18|H Chain H, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 73
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 146 FWSESGKIPLIARAGLDGKKQTILAQEI 173
F SE+GKI R GL GK+Q ILA+ I
Sbjct: 28 FLSETGKILPRRRTGLSGKEQRILAKTI 55
>pdb|1I94|R Chain R, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I95|R Chain R, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1I96|R Chain R, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|R Chain R, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|2E5L|R Chain R, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via
The Shine- Dalgarno Interaction
pdb|2ZM6|R Chain R, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
Length = 87
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 146 FWSESGKIPLIARAGLDGKKQTILAQEI 173
F SE+GKI R GL GK+Q ILA+ I
Sbjct: 42 FLSETGKILPRRRTGLSGKEQRILAKTI 69
>pdb|1FKA|R Chain R, Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution
pdb|1FJG|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
pdb|1G1X|C Chain C, Structure Of Ribosomal Proteins S15, S6, S18, And 16s
Ribosomal Rna
pdb|1G1X|H Chain H, Structure Of Ribosomal Proteins S15, S6, S18, And 16s
Ribosomal Rna
pdb|1HR0|R Chain R, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNW|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1HNZ|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1GIX|U Chain U, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1IBK|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1IBL|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1JGO|U Chain U, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|U Chain U, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGQ|U Chain U, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1J5E|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1N32|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
pdb|1N33|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
pdb|1N34|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
pdb|1N36|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
pdb|1ML5|U Chain U, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1XMO|R Chain R, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
pdb|1XMQ|R Chain R, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
pdb|1XNQ|R Chain R, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
pdb|1XNR|R Chain R, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
pdb|1YL4|U Chain U, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
pdb|2B64|R Chain R, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|2B9M|R Chain R, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
pdb|2B9O|R Chain R, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2F4V|R Chain R, 30s Ribosome + Designer Antibiotic
pdb|2HHH|R Chain R, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
pdb|2HGI|U Chain U, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
pdb|2HGP|U Chain U, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
pdb|2HGR|U Chain U, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
pdb|2VQE|R Chain R, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
pdb|2VQF|R Chain R, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
pdb|3OTO|R Chain R, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
pdb|3T1H|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
pdb|3T1Y|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
pdb|4AQY|R Chain R, Structure Of Ribosome-Apramycin Complexes
Length = 88
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 146 FWSESGKIPLIARAGLDGKKQTILAQEI 173
F SE+GKI R GL GK+Q ILA+ I
Sbjct: 43 FLSETGKILPRRRTGLSGKEQRILAKTI 70
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTG 577
N D CA +PC H NG C LD+ + C C TG
Sbjct: 82 NTDECASSPCLH-NGRC-----LDKINEFQCECPTG 111
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD 278
GTN C NNGGC+ +C + C C G + C + D
Sbjct: 28 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDID 70
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 236 GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD 278
GTN C NNGGC+ +C + C C G + C + D
Sbjct: 4 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDID 46
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTG 577
N D CA +PC H NG C LD+ + C C TG
Sbjct: 80 NTDECASSPCLH-NGRC-----LDKINEFQCECPTG 109
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 598 FKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
F+C +G I + CD + +C D+SDE L C + C+ F C + CI S +
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDE--LCC--KACQGKGFHCKSGVCIPSQY 258
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
C + F+C + CIP CD +C D SDE
Sbjct: 8 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 551 CRHLNGNCDDICKLDETG-QVVCSCFTGKVLMEDNRSCT 588
C + NG C+ C D TG + C C G L+ D SCT
Sbjct: 91 CVNENGGCEQYCS-DHTGTKRSCRCHEGYSLLADGVSCT 128
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 237 TNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD 278
TN C NNGGC+ +C + C C G + C + D
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 43
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYC 629
C +F C++ CI CD +C D SDE C
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALC 42
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 237 TNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD 278
TN C NNGGC+ +C + C C G + C + D
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 43
>pdb|1W8B|L Chain L, Factor7 - 413 Complex
Length = 57
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 551 CRHLNGNCDDICKLDETG-QVVCSCFTGKVLMEDNRSCT 588
C + NG C+ C D TG + C C G L+ D SCT
Sbjct: 4 CVNENGGCEQYCS-DHTGTKRSCRCHEGYSLLADGVSCT 41
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
++ CS +F C G CI + CD +C DKSDE
Sbjct: 53 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 87
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 532 RPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
RP I I +++D C + P G C ++ G C C TG L ED R C
Sbjct: 111 RPNPITVILEDIDECQELPGLCQGGKC-----INTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 532 RPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
RP I I +++D C + P G C ++ G C C TG L ED R C
Sbjct: 111 RPNPITVILEDIDECQELPGLCQGGKC-----INTFGSFQCRCPTGYYLNEDTRVC 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,086,826
Number of Sequences: 62578
Number of extensions: 863108
Number of successful extensions: 2300
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1798
Number of HSP's gapped (non-prelim): 213
length of query: 652
length of database: 14,973,337
effective HSP length: 105
effective length of query: 547
effective length of database: 8,402,647
effective search space: 4596247909
effective search space used: 4596247909
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)