RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5768
(652 letters)
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 358 bits (919), Expect = e-115
Identities = 166/645 (25%), Positives = 281/645 (43%), Gaps = 75/645 (11%)
Query: 2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQV 61
F+ S ++ I +LE + + + + S++ +++W++++ +
Sbjct: 8 FLLFS--RRADIRRISLETNNNNVAI-----PLTGVKEASALDFDVTDNRIYWTDISLK- 59
Query: 62 VTIEMAFMDGTKRETVV-SQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQ 120
TI AFM+G+ E VV YP +AVDW+ +N+YW+D N IEV++L GQ
Sbjct: 60 -TISRAFMNGSALEHVVEFGLDYPE------GMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112
Query: 121 YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI 180
+R VL+ +D P ALA+DP G+++W+E G P I RA +DG ++T L + +
Sbjct: 113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRAN-GL 171
Query: 181 TLDLKFFSAFYRNLSKGNIHIISLS----------------------------------- 205
T+D ++ +L I ++
Sbjct: 172 TIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIE 231
Query: 206 --NLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELCLYNGV-SAVCAC 262
N + ++ Y+ DI ++ Q+G N C +NG C+ LCL V VC C
Sbjct: 232 RANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGC 291
Query: 263 AHGVV-AQDGKSCSEYDAFIMYSRVNRIDSIHM--TDKSDLNSPFESIRNSTMMKNIIEL 319
D ++CS F+++S+ + I+ + + D+ P S+ +N+ +
Sbjct: 292 PAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSL------RNVRAI 345
Query: 320 SYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLE-------RQGSVEGLAYEYVHNYLYW 372
YD K L++ D ++ I +GS ++ + L+ + Y+YW
Sbjct: 346 DYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405
Query: 373 TCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAF 432
TC IN LD ++ D+PR + ++ +Y+TN P I+RA
Sbjct: 406 TCEATNVINVTRLDGRSVGVVLKGEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAA 462
Query: 433 FSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHP 492
G E + + ++ P ALALD + KLFW D+ L +IE D G NRIVL + L P
Sbjct: 463 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQP 522
Query: 493 FDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISD-NLDACAKTPC 551
+ V+ +++W D + + + E ++ I + I A+ + NL + PC
Sbjct: 523 VGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPC 582
Query: 552 RHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEH 596
NG C IC + G CSC VL++D SC H
Sbjct: 583 AQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKHHHHH 627
Score = 198 bits (505), Expect = 1e-55
Identities = 88/317 (27%), Positives = 144/317 (45%), Gaps = 13/317 (4%)
Query: 278 DAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGT 337
+AF+++SR I I + + T +K L +D ++++DI T
Sbjct: 6 EAFLLFSRRADIRRISLE-----TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT 60
Query: 338 INSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVV 396
I+ F NGS ++E EG+A +++ LYW I LD R V+V
Sbjct: 61 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLV 118
Query: 397 RLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDH 456
D PR + +D + +YWT W P I RA G +++ ++ N L +D+
Sbjct: 119 WKDL-DSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLV-PNVGRANGLTIDY 175
Query: 457 QAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRAN 516
+L+W D + IE + G NR V++ P HPF + Y ++I+WTDW ++ RAN
Sbjct: 176 AKRRLYWTDLDTNLIESSNMLGLNREVIADDLP-HPFGLTQYQDYIYWTDWSRRSIERAN 234
Query: 517 KYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFT 576
K +G+ ++ ++ M I+ + + C NG+C +C G VC C
Sbjct: 235 KTSGQNRTIIQGHLDYVMDIL-VFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPA 293
Query: 577 GKVLMEDNRSCTINTVC 593
L DNR+C+ T
Sbjct: 294 HYSLNADNRTCSAPTTF 310
Score = 50.6 bits (120), Expect = 1e-06
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 1 MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 60
M+ KI L+G + + S LSK ++A+ GK+FW++ +
Sbjct: 446 MYFTNLQERSPKIERAALDGTEREVLFF------SGLSKPIALALDSRLGKLFWADSDLR 499
Query: 61 VVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQ 120
IE + + G R + + + +YW D ++ +IE +TG+
Sbjct: 500 --RIESSDLSGANRIVLEDSNILQP-------VGLTVFENWLYWIDKQQQMIEKIDMTGR 550
Query: 121 YRYVLISGGVDQPSALAV 138
+ + Q S +
Sbjct: 551 EGRTKVQARIAQLSDIHA 568
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 317 bits (813), Expect = e-100
Identities = 154/593 (25%), Positives = 268/593 (45%), Gaps = 57/593 (9%)
Query: 37 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVD 96
L +++ G ++WS+V+++ I+ + T+ V + +A D
Sbjct: 39 LEDAAAVDFVFSHGLIYWSDVSEE--AIKRTEFNKTESVQNVVVSGLLSPDG----LACD 92
Query: 97 WIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI 156
W+ + +YW+D + N IEV+ L G R VL +DQP A+A+DP SG+++W++ G++P I
Sbjct: 93 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 152
Query: 157 ARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTI--- 213
RAG+DG + I+ I +TLD + ++ + IH +L + + +
Sbjct: 153 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 212
Query: 214 -----SMKPYGDS-YLKDIK---IYSKDAQTGT--------------------------- 237
++ + D Y D I + + TG
Sbjct: 213 LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 272
Query: 238 NPCGVNNGGCAELCLYNGVSA--VCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMT 295
NPCG++NGGC+ LCL + V CAC GV + + A + R D +
Sbjct: 273 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRI- 331
Query: 296 DKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ 355
D + + +++ I + YD ++++D + I F +GS + ++ Q
Sbjct: 332 -SLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ 390
Query: 356 -GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDS 414
+G+A ++V LYWT I L+ + ++ L ++PR I +D
Sbjct: 391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDL---EEPRAIVLDPMVG 447
Query: 415 RIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERC 474
+YWT+W P I+RA G ++ T + PN LALD+ K++WGDA+ DKIE
Sbjct: 448 YMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506
Query: 475 DYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPM 534
+ DGT R VL + H F + G++++WTDW ++ R +K + E + + M
Sbjct: 507 NTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAERE-VIIDQLPDLM 565
Query: 535 GIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
G+ A + + + NG C +C L + C+C G L+ D ++C
Sbjct: 566 GLKATNVHRVIGSNPCAEE-NGGCSHLC-LYRPQGLRCACPIGFELISDMKTC 616
Score = 199 bits (507), Expect = 6e-56
Identities = 94/350 (26%), Positives = 161/350 (46%), Gaps = 12/350 (3%)
Query: 273 SCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSD 332
+ ++Y+ + + T+ + + +++ + + + +++SD
Sbjct: 4 HHHHHAPLLLYANRRDLRLVDATNGKENATIV-----VGGLEDAAAVDFVFSHGLIYWSD 58
Query: 333 IQKGTINSVFFNGSNHR--VLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKA 390
+ + I FN + V++ S +GLA +++ LYWT + I +LD
Sbjct: 59 VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL- 117
Query: 391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPN 450
R V+ + D+PR I +D +YWT+W P I+RA G II ++I PN
Sbjct: 118 -RKVLFW-QELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPN 174
Query: 451 ALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIH 510
L LD++ +KL+W DA+L+ I + + DGTNR + K S HPF + ++ + ++WTDW H
Sbjct: 175 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTH 234
Query: 511 AVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDIC-KLDETGQ 569
++L NKYTGE + + +I PM I A S A PC NG C +C
Sbjct: 235 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 294
Query: 570 VVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCH 619
C+C TG L+E+ ++C + +D I +
Sbjct: 295 YQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ 344
Score = 153 bits (388), Expect = 9e-40
Identities = 73/278 (26%), Positives = 120/278 (43%), Gaps = 45/278 (16%)
Query: 35 STLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIA 94
+ +I PV+G ++W++ + I +F+DG+ + VV+ + IA
Sbjct: 346 EDIRHAIAIDYDPVEGYIYWTDDEVR--AIRRSFIDGSGSQFVVTAQIAHPD-----GIA 398
Query: 95 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP 154
VDW+A+N+YW+D + IEV RL G R +LIS +++P A+ +DP GY++W++ G+IP
Sbjct: 399 VDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIP 458
Query: 155 LIARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTIS 214
I RA LDG + +L + + LD ++ + I +++ +
Sbjct: 459 KIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE 518
Query: 215 MK-------------------------------------PYGDSYLKDIKIYSKDAQTGT 237
K L +K + G+
Sbjct: 519 DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGS 578
Query: 238 NPCGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
NPC NGGC+ LCLY CAC G + D K+C
Sbjct: 579 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 235 bits (601), Expect = 1e-71
Identities = 101/391 (25%), Positives = 169/391 (43%), Gaps = 43/391 (10%)
Query: 235 TGTNPCGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYD--------------- 278
TG C VNNGGCA+ C + C C G + +DG++C + +
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60
Query: 279 --------------------AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIE 318
+ + + + + L E ++N I
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 319 LSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNND 377
L + ++R+ +F+SD+ I NGSN ++ S GLA ++VH+ LYWT +
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 180
Query: 378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG 437
+ I +LD + ++ L +KPR I + + IYWT+W + P I+ + G G
Sbjct: 181 SRIEVANLDGAHRKVLLWQSL---EKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSG 236
Query: 438 TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAV 497
I T + PN L +D+ +++W DA+ IER + DG++R + HPF + V
Sbjct: 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 296
Query: 498 YGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGN 557
+ + ++WTDW ++ ANK+TG+ +R + PM I + K C NG
Sbjct: 297 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGG 356
Query: 558 CDDICKLDETGQVVCSCFTGKVLMEDNRSCT 588
C +C C+C TG ++ +C
Sbjct: 357 CTHLCLPSGQN-YTCACPTGFRK-INSHACA 385
Score = 145 bits (367), Expect = 2e-38
Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 50/271 (18%)
Query: 47 PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSD 106
+ +FWS+VT I A ++G+ E VVS +AVDW+ +YW+D
Sbjct: 125 HRRELVFWSDVTLD--RILRANLNGSNVEEVVSTGLESPG-----GLAVDWVHDKLYWTD 177
Query: 107 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 166
+ IEVA L G +R VL+ +++P A+A+ P G ++W++ G P I + +DG +
Sbjct: 178 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237
Query: 167 TILAQEIIMPIKDITLDL----------KFFSAFYRNLSKGNIHIISLSNLSDVSTISMK 216
I+A + +T+D K NL + + L I++
Sbjct: 238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV- 296
Query: 217 PYGD----SYLKDIKIYSKDAQTGTN---------------------------PCGVNNG 245
+ D + I S + TG N CG NNG
Sbjct: 297 -FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNG 355
Query: 246 GCAELCLYNGVSAVCACAHGVVAQDGKSCSE 276
GC LCL +G + CAC G + +C++
Sbjct: 356 GCTHLCLPSGQNYTCACPTGFRKINSHACAQ 386
Score = 56.7 bits (136), Expect = 9e-09
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 89 CNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS 148
+ + + ++WSD + I A L G ++S G++ P LAVD L+W+
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 176
Query: 149 ESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 183
+SG I A LDG + +L + + + I L
Sbjct: 177 DSGT-SRIEVANLDGAHRKVLLWQSLEKPRAIALH 210
Score = 45.5 bits (107), Expect = 3e-05
Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG-MCIPF 608
C NG C C G V C+C TG L ED R+C C+E + CS G
Sbjct: 5 NCNVNNGGCAQKC-QMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGY-CSQGCTNSEG 62
Query: 609 NQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKC 646
C + D + + + +
Sbjct: 63 AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQ 100
Score = 34.7 bits (79), Expect = 0.090
Identities = 17/106 (16%), Positives = 27/106 (25%), Gaps = 2/106 (1%)
Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMC 605
C G C C + G C C G L D RSC F +
Sbjct: 41 CQDVNECAEEGYCSQGC-TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIR 99
Query: 606 IPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
+ ++ + I ++ IL ++
Sbjct: 100 QVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRAN 144
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 224 bits (571), Expect = 4e-68
Identities = 93/322 (28%), Positives = 157/322 (48%), Gaps = 12/322 (3%)
Query: 278 DAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGT 337
++Y+ + + T+ + + +++ + + + +++SD+ +
Sbjct: 4 APLLLYANRRDLRLVDATNGKE-----NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 58
Query: 338 INSVFFNGSNH--RVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVV 395
I FN + V++ S +GLA +++ LYWT + I +LD R V+
Sbjct: 59 IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVL 116
Query: 396 VRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALD 455
+ D+PR I +D +YWT+W P I+RA G II ++I PN L LD
Sbjct: 117 FW-QELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNGLTLD 174
Query: 456 HQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRA 515
++ +KL+W DA+L+ I + + DGTNR + K S HPF + ++ + ++WTDW H++L
Sbjct: 175 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILAC 234
Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLD-ETGQVVCSC 574
NKYTGE + + +I PM I A S A PC NG C +C + C+C
Sbjct: 235 NKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 294
Query: 575 FTGKVLMEDNRSCTINTVCSEH 596
TG L+E+ ++C H
Sbjct: 295 PTGVKLLENGKTCKDGNSHHHH 316
Score = 139 bits (351), Expect = 7e-37
Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 48/285 (16%)
Query: 37 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVD 96
L +++ G ++WS+V+++ I+ + T+ V + +A D
Sbjct: 34 LEDAAAVDFVFSHGLIYWSDVSEE--AIKRTEFNKTESVQNVVVSGLLSPDG----LACD 87
Query: 97 WIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI 156
W+ + +YW+D + N IEV+ L G R VL +DQP A+A+DP SG+++W++ G++P I
Sbjct: 88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147
Query: 157 ARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTI--- 213
RAG+DG + I+ I +TLD + ++ + IH +L + + +
Sbjct: 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 207
Query: 214 -----SMKPYGDS-YLKDI---KIYSKDAQTGTN-------------------------- 238
++ + D Y D I + + TG
Sbjct: 208 LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 267
Query: 239 -PCGVNNGGCAELCLYN--GVSAVCACAHGVV-AQDGKSCSEYDA 279
PCG++NGGC+ LCL + CAC GV ++GK+C + ++
Sbjct: 268 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNS 312
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 226 bits (576), Expect = 8e-68
Identities = 93/400 (23%), Positives = 162/400 (40%), Gaps = 54/400 (13%)
Query: 238 NPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD------------------- 278
N C NNGGC+ +C + C C G + C + D
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 279 ----------------AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYD 322
+ S + + E ++N++ L +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 323 YKRKTLFYSDIQKGTINSVFFNGSNHRVLLER-----QGSVEGLAYEYVHNYLYWTCNND 377
+++SD+ + I S + ++ + + +GLA +++H+ +YWT +
Sbjct: 121 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 180
Query: 378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG 437
T++ D K R + R KPR I +D +YWT+W + I++ +G
Sbjct: 181 GTVSVADTKGVK--RKTLFRENG-SKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVD 236
Query: 438 TESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNR--IVLSKISPLHPFDM 495
S++T +I PN + LD + +L+W D++L I D +G NR I+ + HPF +
Sbjct: 237 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL 296
Query: 496 AVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHL- 554
AV+ + +FWTD + A+ AN+ TG +V L +N+ P +V + C
Sbjct: 297 AVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTT 356
Query: 555 --NGNCDDIC-----KLDETGQVVCSCFTGKVLMEDNRSC 587
NG C +C + + C+C G +L D RSC
Sbjct: 357 LSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 127 bits (320), Expect = 5e-32
Identities = 68/279 (24%), Positives = 109/279 (39%), Gaps = 54/279 (19%)
Query: 47 PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSD 106
+++WS+++++ I +D + + A + +AVDWI NIYW+D
Sbjct: 121 VASNRIYWSDLSQR--MICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTD 177
Query: 107 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 166
+ VA G R L +P A+ VDP G+++W++ G I + GL+G
Sbjct: 178 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237
Query: 167 TILAQEIIMPIKDITLDL----------KFFSAFYRNLSKGNIHIISLSNLSDVSTISMK 216
L E I ITLDL K S +++ GN I S+
Sbjct: 238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 297
Query: 217 PYGD----SYLKDIKIYSKDAQTG---------------------------TNPC---GV 242
+ D + + + I+S + TG N C +
Sbjct: 298 VFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTL 357
Query: 243 NNGGCAELCL------YNGVSAVCACAHG-VVAQDGKSC 274
+NGGC LCL + CAC G ++A+D +SC
Sbjct: 358 SNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 40.2 bits (93), Expect = 0.002
Identities = 21/98 (21%), Positives = 26/98 (26%), Gaps = 15/98 (15%)
Query: 550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNR-----SCTINTVCSEH------DF 598
C NG C +C D C C G L+ R C CS+ +
Sbjct: 2 ECLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 599 KCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRP 636
KC C Q C L+ R
Sbjct: 61 KCQ---CEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR 95
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 217 bits (552), Expect = 5e-65
Identities = 97/357 (27%), Positives = 164/357 (45%), Gaps = 14/357 (3%)
Query: 238 NPCGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAFIMYSRVNRIDSIHMTD 296
N C G C++ C + + C C G + D +SC + NRID +
Sbjct: 2 NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 297 KSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQ- 355
+ ++N I L + ++R+ +F+SD+ I NGSN ++
Sbjct: 61 HRSEYTLL-----LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115
Query: 356 GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSR 415
S GLA ++VH+ LYWT + + I +LD + ++ L +KPR I + +
Sbjct: 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL---EKPRAIALHPMEGT 172
Query: 416 IYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCD 475
IYWT+W + P I+ + G G I T + PN L +D+ +++W DA+ IER +
Sbjct: 173 IYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231
Query: 476 YDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMG 535
DG++R + HPF + V+ + ++WTDW ++ ANK+TG+ +R + PM
Sbjct: 232 LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMD 291
Query: 536 IVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTV 592
I + K C NG C +C C+C TG + ++ +C + +
Sbjct: 292 IHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNY-TCACPTGFRKI-NSHACALEVL 346
Score = 144 bits (364), Expect = 2e-38
Identities = 76/320 (23%), Positives = 127/320 (39%), Gaps = 55/320 (17%)
Query: 1 MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 60
+ + I T +L+N L ++ + +FWS+VT
Sbjct: 43 PEPVLLFANRIDIRQVLPHRSEYTLLLNN-------LENAIALDFHHRRELVFWSDVTLD 95
Query: 61 VVTIEMAFMDGTKRETVV-SQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTG 119
I A ++G+ E VV + + P +AVDW+ +YW+D + IEVA L G
Sbjct: 96 R--ILRANLNGSNVEEVVSTGLESPG------GLAVDWVHDKLYWTDSGTSRIEVANLDG 147
Query: 120 QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKD 179
+R VL+ +++P A+A+ P G ++W++ G P I + +DG + I+A +
Sbjct: 148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG 207
Query: 180 ITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMK---PYGDSYLKDI---------K 227
+T+D ++ + I +L + IS P+ + +D
Sbjct: 208 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKS 267
Query: 228 IYSKDAQTG---------------------------TNPCGVNNGGCAELCLYNGVSAVC 260
I S + TG N CG NNGGC LCL +G + C
Sbjct: 268 INSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTC 327
Query: 261 ACAHGVVAQDGKSCSEYDAF 280
AC G + +C+ F
Sbjct: 328 ACPTGFRKINSHACALEVLF 347
Score = 31.4 bits (70), Expect = 1.0
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 3/102 (2%)
Query: 550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFN 609
C G C C + G C C G L D RSC F +
Sbjct: 3 ECAE-EGYCSQGC-TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 610 QTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
+ ++ + L R ++ IL ++
Sbjct: 61 HRSEYTLLLNNLENAIALDFHHRR-ELVFWSDVTLDRILRAN 101
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 214 bits (546), Expect = 6e-65
Identities = 60/266 (22%), Positives = 120/266 (45%), Gaps = 7/266 (2%)
Query: 280 FIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTIN 339
+++++ +I+ + + +++ + K II L++D K ++++DI + +I
Sbjct: 3 HLLFAQTGKIERLPL-ERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 340 SVFFNGSNHRVLLERQ-GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRL 398
+G ++ + GS EG+A +++ ++WT + I +D QR V+
Sbjct: 62 RASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT--QRRVLFDT 119
Query: 399 GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQA 458
G PRGI D +YWT+WN P I+ + G + ++ +PN L D +
Sbjct: 120 GL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS 178
Query: 459 EKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKY 518
+L W DA + E + R + + +PF + YG+ +++TDW ++V+ +
Sbjct: 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLA 237
Query: 519 TGEEVYTL-RKNIRRPMGIVAISDNL 543
+E+ T R GI
Sbjct: 238 ISKEMDTFHPHKQTRLYGITIALSQC 263
Score = 133 bits (336), Expect = 3e-35
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 9 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF 68
KI LE + I +A V ++W+++++ +I A
Sbjct: 8 QTGKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFDCVDKVVYWTDISEP--SIGRAS 64
Query: 69 MDGTKRETVVSQKKYPAVTACNLH----IAVDWIAQNIYWSDPKENVIEVARLTGQYRYV 124
+ G + T++ Q +L IA+D + + I+W+D + + IEVA++ G R V
Sbjct: 65 LHGGEPTTIIRQ---------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115
Query: 125 LISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILAQEIIMPIKDITLD 183
L G+ P + DP G L+W++ + P I + +DG + ILAQ+ + +T D
Sbjct: 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD 175
Query: 184 LKFFSAFYRNLSKGNIHIISL--SNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGT 237
+ + ++ V P+ + +Y D +T +
Sbjct: 176 AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGK-NLYYTDWKTNS 230
Score = 66.0 bits (161), Expect = 5e-12
Identities = 15/143 (10%), Positives = 40/143 (27%), Gaps = 17/143 (11%)
Query: 1 MFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 60
++ + KI +++G + + L + + ++ W +
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQ------DNLGLPNGLTFDAFSSQLCWVDAGTH 189
Query: 61 VVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVA-RLTG 119
E R V+ +YP + +N+Y++D K N +
Sbjct: 190 --RAECLNPAQPGRRKVLEGLQYP------FAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239
Query: 120 QYRYVLISGGVDQPSALAVDPES 142
+ + + +
Sbjct: 240 KEMDTFHPHKQTRLYGITIALSQ 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 207 bits (528), Expect = 8e-62
Identities = 84/324 (25%), Positives = 155/324 (47%), Gaps = 26/324 (8%)
Query: 279 AFIMYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTI 338
A++ ++ + + + + D+S+ S ++RN ++ L + +++SD+ + I
Sbjct: 2 AYLFFTNRHEVRKMTL-DRSEYTSLIPNLRN------VVALDTEVASNRIYWSDLSQRMI 54
Query: 339 NSVFFNGSN-----HRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRI 393
S + ++ V+ + +GLA +++H+ +YWT + T++ D K R
Sbjct: 55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RK 112
Query: 394 VVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALA 453
+ R KPR I +D +YWT+W + I++ +G S++T +I PN +
Sbjct: 113 TLFRENG-SKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGIT 170
Query: 454 LDHQAEKLFWGDARLDKIERCDYDGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHA 511
LD + +L+W D++L I D +G NR I+ + HPF +AV+ + +FWTD + A
Sbjct: 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 230
Query: 512 VLRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHL---NGNCDDIC-----K 563
+ AN+ TG +V L +N+ P +V + C NG C +C
Sbjct: 231 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQI 290
Query: 564 LDETGQVVCSCFTGKVLMEDNRSC 587
+ + C+C G +L D RSC
Sbjct: 291 NPHSPKFTCACPDGMLLARDMRSC 314
Score = 151 bits (383), Expect = 3e-41
Identities = 74/324 (22%), Positives = 126/324 (38%), Gaps = 63/324 (19%)
Query: 2 FIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQV 61
++ + + ++ L+ T+++ N L + ++ +++WS+++++
Sbjct: 3 YLFFT--NRHEVRKMTLDRSEYTSLIPN-------LRNVVALDTEVASNRIYWSDLSQR- 52
Query: 62 VTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQY 121
I +D + + A + +AVDWI NIYW+D + VA G
Sbjct: 53 -MICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTKGVK 110
Query: 122 RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDIT 181
R L +P A+ VDP G+++W++ G I + GL+G L E I IT
Sbjct: 111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 170
Query: 182 LDL----------KFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDS-YLKDI---K 227
LDL K S +++ GN I S+ + D + DI
Sbjct: 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 230
Query: 228 IYSKDAQTG---------------------------TNPCG---VNNGGCAELCL----- 252
I+S + TG N C ++NGGC LCL
Sbjct: 231 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQI 290
Query: 253 -YNGVSAVCACAHG-VVAQDGKSC 274
+ CAC G ++A+D +SC
Sbjct: 291 NPHSPKFTCACPDGMLLARDMRSC 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 207 bits (527), Expect = 3e-58
Identities = 89/368 (24%), Positives = 161/368 (43%), Gaps = 25/368 (6%)
Query: 243 NNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLN 301
+ C++LC+ C C G + K+C + NR + MT
Sbjct: 339 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY 398
Query: 302 SPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH-----RVLLERQG 356
+ ++N++ L + +++SD+ + I S + ++ V+
Sbjct: 399 TSLIP-----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 453
Query: 357 SVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRI 416
+ +GLA +++H+ +YWT + T++ D K + + + KPR I +D +
Sbjct: 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG---SKPRAIVVDPVHGFM 510
Query: 417 YWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDY 476
YWT+W + I++ +G S++T +I PN + LD + +L+W D++L I D
Sbjct: 511 YWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569
Query: 477 DGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPM 534
+G NR I+ + HPF +AV+ + +FWTD + A+ AN+ TG +V L +N+ P
Sbjct: 570 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 629
Query: 535 GIVAISDNLDACAKTPCRHL---NGNCDDIC-----KLDETGQVVCSCFTGKVLMEDNRS 586
+V C NG C +C + + C+C G +L D RS
Sbjct: 630 DMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS 689
Query: 587 CTINTVCS 594
C +
Sbjct: 690 CLTEAEAA 697
Score = 131 bits (330), Expect = 4e-32
Identities = 67/281 (23%), Positives = 107/281 (38%), Gaps = 54/281 (19%)
Query: 47 PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSD 106
+++WS+++++ I +D + + A + +AVDWI NIYW+D
Sbjct: 415 VASNRIYWSDLSQR--MICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTD 471
Query: 107 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 166
+ VA G R L +P A+ VDP G+++W++ G I + GL+G
Sbjct: 472 SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531
Query: 167 TILAQEIIMPIKDITLDL----------KFFSAFYRNLSKGNIHIISLSNLSDVSTISMK 216
L E I ITLDL K S +++ GN I S+
Sbjct: 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 591
Query: 217 PYGDSY------------------------------LKDIKIYSKDAQT-GTNPCG---V 242
+ D +D+ ++ + Q G N C +
Sbjct: 592 VFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTL 651
Query: 243 NNGGCAELCLYN------GVSAVCACAHGVV-AQDGKSCSE 276
+NGGC LCL CAC G++ A+D +SC
Sbjct: 652 SNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 692
Score = 70.2 bits (171), Expect = 9e-13
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 540 SDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFK 599
S C C H + CD G C D +C C +F+
Sbjct: 177 SAFEFHCLSGECIHSSWRCD--------GGPDCKD------KSDEENCA-VATCRPDEFQ 221
Query: 600 CSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSS 650
CSDG CI ++ CDR Y+C D SDE P FKC + +CI
Sbjct: 222 CSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLD 272
Score = 67.5 bits (164), Expect = 7e-12
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 589 INTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKC 646
+ C ++F+C DG CI + CD C D SDE C C+ G F C N+C
Sbjct: 2 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRC 61
Query: 647 ILSSH 651
I
Sbjct: 62 IPQFW 66
Score = 67.5 bits (164), Expect = 7e-12
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 582 EDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
D + C T CS+ +F+C DG CI CD +C D SDE C + C P F+C
Sbjct: 78 SDEQGCPPKT-CSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQC 134
Query: 642 DNNKCILSSH 651
+++ CI
Sbjct: 135 NSSTCIPQLW 144
Score = 67.1 bits (163), Expect = 1e-11
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 546 CAKTPCRHLNGNCDDICK-LDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGM 604
C + C CD+ D + + C V D+ C S +F C G
Sbjct: 134 CNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC------SAFEFHCLSGE 187
Query: 605 CIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
CI + CD +C DKSDE CA+ CRP F+C + CI S
Sbjct: 188 CIHSSWRCDGGPDCKDKSDEE--NCAVATCRPDEFQCSDGNCIHGSR 232
Score = 59.4 bits (143), Expect = 2e-09
Identities = 31/120 (25%), Positives = 39/120 (32%), Gaps = 23/120 (19%)
Query: 540 SDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFK 599
S + C C CD C G D SC + T C F+
Sbjct: 89 SQDEFRCHDGKCISRQFVCDSDRD----------CLDG----SDEASCPVLT-CGPASFQ 133
Query: 600 CSDGMCIPFNQTCDRVYNCHDKSDE--------GILYCAMRDCRPGYFKCDNNKCILSSH 651
C+ CIP CD +C D SDE + C F C + +CI SS
Sbjct: 134 CNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSW 193
Score = 36.3 bits (83), Expect = 0.038
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 7/113 (6%)
Query: 546 CAKTPCRHLNGNCDDI--CKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG 603
C C L+ C+ C+ + + S N + ++ C DG
Sbjct: 263 CHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 322
Query: 604 MCIPFNQTCDRVYNCHDKSDEGILYCAMRD-----CRPGYFKCDNNKCILSSH 651
+ + C+ + C D L + C G+ + K +
Sbjct: 323 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 375
Score = 28.6 bits (63), Expect = 8.8
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLM-----------EDNRSCTINTVCS 594
C C NG C +C + G C C G L+ +D +C+ V
Sbjct: 292 CGTNECLDNNGGCSHVCNDLKIG-YECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNL 350
Query: 595 EHDFK--CSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
E +K C +G + + S + + + R ++ +
Sbjct: 351 EGGYKCQCEEGFQLDPHTKA----CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 405
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 206 bits (525), Expect = 2e-57
Identities = 92/388 (23%), Positives = 168/388 (43%), Gaps = 26/388 (6%)
Query: 243 NNGGCAELCLYNGVSAVCACAHGV-VAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLN 301
+ C++LC+ C C G + K+C + NR + MT
Sbjct: 357 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY 416
Query: 302 SPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNH-----RVLLERQG 356
+ ++N++ L + +++SD+ + I S + ++ V+
Sbjct: 417 TSL-----IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471
Query: 357 SVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRI 416
+ +GLA +++H+ +YWT + T++ D K + + KPR I +D +
Sbjct: 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---SKPRAIVVDPVHGFM 528
Query: 417 YWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDY 476
YWT+W + I++ +G S++T +I PN + LD + +L+W D++L I D
Sbjct: 529 YWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587
Query: 477 DGTNR--IVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPM 534
+G NR I+ + HPF +AV+ + +FWTD + A+ AN+ TG +V L +N+ P
Sbjct: 588 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 647
Query: 535 GIVAISDNLDACAKTPCRHL---NGNCDDIC-----KLDETGQVVCSCFTGKVLMEDNRS 586
+V + C NG C +C + + C+C G +L D RS
Sbjct: 648 DMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS 707
Query: 587 CTINTVCSEHDFKCSDGMCIPFNQTCDR 614
C + + S + + + T R
Sbjct: 708 CLTEAEAAVATQETST-VRLKVSSTAVR 734
Score = 143 bits (361), Expect = 6e-36
Identities = 69/312 (22%), Positives = 117/312 (37%), Gaps = 62/312 (19%)
Query: 47 PVKGKMFWSNVTKQVVTIEMAFMDG----TKRETVVSQKKYPAVTACNLHIAVDWIAQNI 102
+++WS+++++ I +D + +TV+S+ +AVDWI NI
Sbjct: 433 VASNRIYWSDLSQR--MICSTQLDRAHGVSSYDTVISRDIQAPD-----GLAVDWIHSNI 485
Query: 103 YWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 162
YW+D + VA G R L +P A+ VDP G+++W++ G I + GL+
Sbjct: 486 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545
Query: 163 GKKQTILAQEIIMPIKDITLDL----------KFFSAFYRNLSKGNIHIISLSNLSDVST 212
G L E I ITLDL K S +++ GN I
Sbjct: 546 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP 605
Query: 213 ISMKPYGDSY------------------------------LKDIKIYSKDAQ-TGTNPC- 240
S+ + D +D+ ++ Q G N C
Sbjct: 606 FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCE 665
Query: 241 --GVNNGGCAELCLY------NGVSAVCACAHGVV-AQDGKSCSEYDAFIMYSRVNRIDS 291
++NGGC LCL + CAC G++ A+D +SC + ++
Sbjct: 666 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVR 725
Query: 292 IHMTDKSDLNSP 303
+ ++ +
Sbjct: 726 LKVSSTAVRTQH 737
Score = 75.3 bits (184), Expect = 3e-14
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 572 CSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAM 631
L+ + C ++F+C DG CI + CD C D SDE C
Sbjct: 5 LRWTVA--LLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLS 62
Query: 632 RDCRPGYFKCDN--NKCILSSH 651
C+ G F C N+CI
Sbjct: 63 VTCKSGDFSCGGRVNRCIPQFW 84
Score = 72.6 bits (177), Expect = 2e-13
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMC 605
C C H + CD G C D +C + T C +F+CSDG C
Sbjct: 201 CLSGECIHSSWRCD--------GGPDCKD------KSDEENCAVAT-CRPDEFQCSDGNC 245
Query: 606 IPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
I ++ CDR Y+C D SDE P FKC + +CI
Sbjct: 246 IHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDK 291
Score = 71.8 bits (175), Expect = 3e-13
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 546 CAKTPCRHLNGNCDDI--CKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG 603
C + C CD+ C+ D + + C V D+ C S +F C G
Sbjct: 152 CNSSTCIPQLWACDNDPDCE-DGSDEWPQRCRGLYVFQGDSSPC------SAFEFHCLSG 204
Query: 604 MCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
CI + CD +C DKSDE CA+ CRP F+C + CI S
Sbjct: 205 ECIHSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQCSDGNCIHGSR 250
Score = 68.7 bits (167), Expect = 3e-12
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 582 EDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
D + C T CS+ +F+C DG CI CD +C D SDE C + C P F+C
Sbjct: 96 SDEQGCPPKT-CSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQC 152
Query: 642 DNNKCILSSH 651
+++ CI
Sbjct: 153 NSSTCIPQLW 162
Score = 64.1 bits (155), Expect = 8e-11
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMC 605
C C C D + VC + D SC + T C F+C+ C
Sbjct: 101 CPPKTCSQDEFRCHDGKCISRQF--VCDSDRDCLDGSDEASCPVLT-CGPASFQCNSSTC 157
Query: 606 IPFNQTCDRVYNCHDKSDEGILYCAM--------RDCRPGYFKCDNNKCILSSH 651
IP CD +C D SDE C C F C + +CI SS
Sbjct: 158 IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSW 211
Score = 53.7 bits (128), Expect = 2e-07
Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 546 CAKTPCRHLNGNCDD-ICKLDETGQVVCSCFTGKVLMEDNRSCT-INTVCSEHDFKCSDG 603
CA CR C D C G C M D C + + FKC G
Sbjct: 228 CAVATCRPDEFQCSDGNC---IHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSG 284
Query: 604 MCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
CI ++ C+ +C D SDE I C +C C
Sbjct: 285 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGC 322
Score = 34.8 bits (79), Expect = 0.11
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 546 CAKTPCRHLNGNCDDI--CKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG 603
C C L+ C+ C+ + + S N + ++ C DG
Sbjct: 281 CHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 340
Query: 604 MCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
+ + C+ + C D + G +KC
Sbjct: 341 FQLVAQRRCEDIDECQDPDTC----SQLCVNLEGGYKC 374
Score = 31.0 bits (69), Expect = 1.4
Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 6/107 (5%)
Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMC 605
C C NG C +C + G C C G L+ R C C + D +
Sbjct: 310 CGTNECLDNNGGCSHVCNDLKIG-YECLCPDGFQLV-AQRRCEDIDECQDPDTCSQLCVN 367
Query: 606 IPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSHT 652
+ C C + A + + N+ + T
Sbjct: 368 LEGGYKC----QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 410
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 86.7 bits (214), Expect = 9e-19
Identities = 30/259 (11%), Positives = 80/259 (30%), Gaps = 26/259 (10%)
Query: 272 KSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIR----NSTMMKNIIELSYDYKRKT 327
+ ++ Y R N T S + I+ ST++ +
Sbjct: 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNY 117
Query: 328 LFY---SDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKID 384
++Y ++ + +G + + + Y Y+ + + + D
Sbjct: 118 IYYLHYDTQTATSLYRIRIDGEEKKKIK----NHYLFTCNTSDRYFYYNNPKNGQLYRYD 173
Query: 385 LDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITT 444
S + + + +D D+ +Y+ + N +I + +
Sbjct: 174 TASQSEALFY-----DCNCYKPVVLD--DTNVYYMDVNRD-NAIVHVNINNPNPVVLTEA 225
Query: 445 DITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFW 504
+I N + + + + DGT L+K ++ V +++++
Sbjct: 226 NIEHYNV----YGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEF---CNINVTSQYVYF 278
Query: 505 TDWVIHAVLRANKYTGEEV 523
TD+V + + + +
Sbjct: 279 TDFVSNKEYCTSTQNPDTI 297
Score = 57.8 bits (139), Expect = 3e-09
Identities = 20/239 (8%), Positives = 75/239 (31%), Gaps = 22/239 (9%)
Query: 2 FIAVSSPTQSKIVVCNLEGEYQTTI--LSNESNDTSTLSKISSIAVWPVKGKMFWSN-VT 58
++ KI + ++ + + ++ L I + +++ + T
Sbjct: 66 YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDT 125
Query: 59 KQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLT 118
+ ++ +DG +++ + + + + + Y+++PK +
Sbjct: 126 QTATSLYRIRIDGEEKKKIKNHYLFT----------CNTSDRYFYYNNPKNGQLYRYDTA 175
Query: 119 GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIK 178
Q + +P L +++ + + I ++ +L + I
Sbjct: 176 SQSEALFYDCNCYKPVVLD----DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY- 230
Query: 179 DITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGT 237
++ L F+ + ++ + ++ + + + +Y D +
Sbjct: 231 NVYGSLIFYQR---GGDNPALCVVKNDG-TGFKELAKGEFCNINVTSQYVYFTDFVSNK 285
Score = 52.4 bits (125), Expect = 2e-07
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 326 KTLFYSDIQK-GTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKID 384
+F+S+ G + ++ +GSN L + + NY+Y+ NN+ I
Sbjct: 26 GEVFFSNTNDNGRLYAMNIDGSNIHKLSN--DTAMYINA--DKNYVYYVRNNNQKITSQT 81
Query: 385 LDSPKAQRIVVVRLGQHDK-----PRGIDIDSCDSRIYWTNWN-SHLPSIQRAFFSGFGT 438
S + ++ H I + IY+ +++ S+ R G
Sbjct: 82 FFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK 141
Query: 439 ESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVY 498
+ I + + ++ + + ++ R D + + + P +
Sbjct: 142 KKIKNHYLF-----TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPV--VLD 194
Query: 499 GEFIFWTDWVIHAVLRANKYTGEEVYTL 526
+++ D + L
Sbjct: 195 DTNVYYMDVNRDNAIVHVNINNPNPVVL 222
Score = 51.6 bits (123), Expect = 3e-07
Identities = 18/180 (10%), Positives = 57/180 (31%), Gaps = 18/180 (10%)
Query: 308 RNSTMMKNIIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVH 367
+KN + + + +Y++ + G + + + + + +
Sbjct: 139 EEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDD--- 195
Query: 368 NYLYWT-CNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLP 426
+Y+ N D I +++++P + + + S I++ P
Sbjct: 196 TNVYYMDVNRDNAIVHVNINNPNPVVLT--------EANIEHYNVYGSLIFYQR-GGDNP 246
Query: 427 SIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSK 486
++ G G + + + N + + +++ D +K + I +
Sbjct: 247 ALCVVKNDGTGFKELAKGEFCNINVTS-----QYVYFTDFVSNKEYCTSTQNPDTIKALQ 301
Score = 45.9 bits (108), Expect = 2e-05
Identities = 38/323 (11%), Positives = 93/323 (28%), Gaps = 50/323 (15%)
Query: 87 TACNLHIAVDWIAQN--IYWSDPK-ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG 143
TA NL+ A + + +++S+ + + G + L + ++ +
Sbjct: 11 TAGNLYNAGLFCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMY-----INADKN 65
Query: 144 YLFWSESGKIPL------------IARAGLDGKKQTILAQEIIMPIKDITLDLKFFSAFY 191
Y+++ + + + R +G T+L + + I + Y
Sbjct: 66 YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLI--GNYIYYLHY 123
Query: 192 RNLSKGNIHIISLSNLSDVSTISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELC 251
+ +++ I + + + + Y+ + A
Sbjct: 124 DTQTATSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY 183
Query: 252 LYNGVSAVCACAHGVVAQDGKSCSEYDAFIMYSRVNRIDSIHMTDKSDLNSPFESIRNST 311
N V D + Y VNR ++I + ++ N
Sbjct: 184 DCNCYKPVVL---------------DDTNVYYMDVNRDNAIVHVNINN--------PNPV 220
Query: 312 MMKNIIELSYDYKRKTLFYS-DIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYL 370
++ Y+ +FY + V +G+ + L + G + Y+
Sbjct: 221 VLTEANIEHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAK--GEFCNINV--TSQYV 276
Query: 371 YWTCNNDATINKIDLDSPKAQRI 393
Y+T +P +
Sbjct: 277 YFTDFVSNKEYCTSTQNPDTIKA 299
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 75.4 bits (186), Expect = 4e-17
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
CS+ +F+C DG CI CD +C D SDE C + C P F+C+++ CI
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNSSTCIPQLW 59
Score = 52.3 bits (126), Expect = 5e-09
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 582 EDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
D SC + T C F+C+ CIP CD +C D SDE
Sbjct: 32 SDEASCPVLT-CGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 73
Score = 27.6 bits (62), Expect = 2.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 632 RDCRPGYFKCDNNKCI 647
+ C F+C + KCI
Sbjct: 1 KTCSQAEFRCHDGKCI 16
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 70.0 bits (172), Expect = 3e-15
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
C + F C+ G CIP + TCD +C D+SDE F C+N +CI +
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININW 63
Score = 51.5 bits (124), Expect = 1e-08
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 587 CTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
C T F C++G CI N CD +C D SDE
Sbjct: 40 CAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77
Score = 28.4 bits (64), Expect = 1.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 630 AMRDCRPGYFKCDNNKCI 647
+ R C P F C + +CI
Sbjct: 1 SARTCPPNQFSCASGRCI 18
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 57.5 bits (138), Expect = 1e-09
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 539 ISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDF 598
+ + + T H+ DD + + + + +E+ + C EH+
Sbjct: 10 LIERTNKI-TTSISHVESLLDDRLD----PKRIRKAGSLRHRVEELEDPS----CDEHEH 60
Query: 599 KCS--DGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN--NKCI 647
+C D CI CD +C + DE C + F D + C
Sbjct: 61 QCGGDDPQCISKLFVCDGHNDCRNGEDE--KDCTLPTKAGDKFIGDVCFDHCT 111
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 52.3 bits (126), Expect = 2e-09
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 590 NTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMR 632
+ CS FKC+ G CIP + TCD +C D SDE C +
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 28.8 bits (65), Expect = 0.52
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 630 AMRDCRPGYFKCDNNKCI 647
C FKC++ +CI
Sbjct: 1 GSHSCSSTQFKCNSGRCI 18
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 56.8 bits (136), Expect = 3e-09
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 553 HLNGNCDDIC-KLDETGQVVCSCFTGKVLMEDNRSCTI-NTVCSEHDFKC--SDGMCIPF 608
L+ + + KLDE ++ F ++ D R I T C + F+C ++ CI
Sbjct: 14 RLDRIIEKLRTKLDEAEKIDPEHFVSEI---DARVTKIEGTHCEKRTFQCGGNEQECISD 70
Query: 609 NQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
CD +CH+ DE C + G
Sbjct: 71 LLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFS 103
Score = 31.8 bits (71), Expect = 0.54
Identities = 15/107 (14%), Positives = 22/107 (20%), Gaps = 8/107 (7%)
Query: 544 DACAKTPCRHLNGNCD----DICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFK 599
D C + + N C L V T + I
Sbjct: 89 DVCDTSVVKAGNVFSGTSTWHGC-LAREDHVTRITITA-SKRRKFFTARIWLRALVESEL 146
Query: 600 CSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKC 646
G + + YN + IL C N+
Sbjct: 147 ERHGENVTSSFNAKGYYNFASRRL--ILLPTDDHDDHLAVVCSFNRG 191
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 54.9 bits (131), Expect = 1e-08
Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 6/99 (6%)
Query: 554 LNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKC--SDGMCIPFNQT 611
L DI + T + L + + C EH+ +C CI
Sbjct: 16 LAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHH-CDEHESECRGDVPECIHDLLF 74
Query: 612 CDRVYNCHDKSDEGILYCAMRDCRPG---YFKCDNNKCI 647
CD +C D SDE C++ G C
Sbjct: 75 CDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCE 113
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 56.9 bits (137), Expect = 1e-08
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 524 YTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSC--FTGKVLM 581
+ + +R + +S N C CR G + + T + F V
Sbjct: 141 FQQGADTQRRFKLSDLSINSTECLHVHCR---GLETSLAECTFTKRRTMGYQDFADVVCY 197
Query: 582 EDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
+ F+C +G I + CD + +C D+SDE L C + C+ F C
Sbjct: 198 TQKADS-----PMDDFFQCVNGKYISQMKACDGINDCGDQSDE--LCC--KACQGKGFHC 248
Query: 642 DNNKCI 647
+ CI
Sbjct: 249 KSGVCI 254
Score = 39.5 bits (92), Expect = 0.003
Identities = 15/103 (14%), Positives = 23/103 (22%), Gaps = 13/103 (12%)
Query: 558 CDDICKLDETGQVVCS--CFTGKVLMEDNRSC----TINTVCSE---HDFKCSDGMCIPF 608
C + E V C F + +T C + S C
Sbjct: 123 CKSSWSMREA-NVACLDLGFQQGADTQRRFKLSDLSINSTECLHVHCRGLETSLAECTFT 181
Query: 609 NQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
+ + D +F+C N K I
Sbjct: 182 KRRTMGYQDFADVVCYTQ---KADSPMDDFFQCVNGKYISQMK 221
Score = 33.4 bits (76), Expect = 0.26
Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 21/108 (19%)
Query: 546 CAKTPCRHLNGNCDDI--CKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG 603
C CD I C D++ ++ C GK F C G
Sbjct: 211 CVNGKYISQMKACDGINDCG-DQSDELCCKACQGKG------------------FHCKSG 251
Query: 604 MCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSSH 651
+CIP C+ +C DE + +
Sbjct: 252 VCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRR 299
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 49.6 bits (119), Expect = 2e-08
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA 630
C +F C++ CI CD +C D SDE C
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 30.0 bits (68), Expect = 0.18
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 632 RDCRPGYFKCDNNKCILSS 650
C+PG F C N++CI
Sbjct: 4 PQCQPGEFACANSRCIQER 22
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 50.6 bits (121), Expect = 2e-08
Identities = 13/54 (24%), Positives = 18/54 (33%)
Query: 548 KTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCS 601
+ C + NG C+ C + C C G L+ D SCT
Sbjct: 5 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 58
Score = 48.3 bits (115), Expect = 1e-07
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 238 NPCGVNNGGCAELCLYN-GVSAVCACAHG-VVAQDGKSCSEYDAF 280
C NGGC + C + G C C G + DG SC+ +
Sbjct: 6 LICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 49.7 bits (119), Expect = 2e-08
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAF 280
C ++NGGC + C C+CAHG V+ D KSC + F
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 46.6 bits (111), Expect = 3e-07
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCS 594
C NG CD C +E +V CSC G VL +D++SC
Sbjct: 1 CSLDNGGCDQFC-REERSEVRCSCAHGYVLGDDSKSCVSTERFP 43
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 49.8 bits (119), Expect = 2e-08
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKC 600
C NG C+ CK +VVCSC G L E+ +SC F C
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCE-----PAVPFPC 46
Score = 47.4 bits (113), Expect = 1e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 240 CGVNNGGCAELCLYN-GVSAVCACAHGVV-AQDGKSCSEYDAF 280
C + NG C + C + VC+C G A++ KSC F
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 50.2 bits (120), Expect = 3e-08
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 590 NTVCSEHDFKC-SDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN-NKCI 647
C F C +C+P CD +C D +DE A C + +
Sbjct: 6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE--SIAA--GCLYNSTGSGSGSGST 61
Query: 648 LSS 650
Sbjct: 62 EEL 64
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 48.3 bits (116), Expect = 4e-08
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
CS +F C G CI + CD +C DKSDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 27.9 bits (63), Expect = 0.91
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 634 CRPGYFKCDNNKCILSS 650
C F C + +CI SS
Sbjct: 2 CSAFEFHCLSGECIHSS 18
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 48.5 bits (116), Expect = 6e-08
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKC 600
C + NG C+ C + C C G L+ D SCT ++ C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT-----PTVEYPC 46
Score = 47.0 bits (112), Expect = 2e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 240 CGVNNGGCAELCLYN-GVSAVCACAHG-VVAQDGKSCSEYDAF 280
C NGGC + C + G C C G + DG SC+ +
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 48.1 bits (115), Expect = 8e-08
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSEYDAF 280
C ++NG C + C S VC+CA G +A +GK+C +
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 45.8 bits (109), Expect = 5e-07
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCS 594
C NG+CD C +E VVCSC G L ++ ++C
Sbjct: 4 CSLDNGDCDQFC-HEEQNSVVCSCARGYTLADNGKACIPTGPYP 46
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 47.6 bits (114), Expect = 1e-07
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 587 CTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
C + F+C + CIP CD +C D SDE
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 32.2 bits (74), Expect = 0.030
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 629 CAMRDCRPGYFKCDNNKCILSS 650
++C F+C N +CI S
Sbjct: 3 GPAKECEKDQFQCRNERCIPSV 24
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 1e-07
Identities = 49/292 (16%), Positives = 97/292 (33%), Gaps = 88/292 (30%)
Query: 3 IAVSSP----TQ--SKIVVCNLEGEYQTTILSNESNDTSTLSK--ISSIAV-----WPVK 49
I +S P Q +V L G + L + + S+ ++++A+ W
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWES- 291
Query: 50 GKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYP------------------------A 85
F+ +V K I + F G + + YP +
Sbjct: 292 ---FFVSVRK---AITVLFFIGVR-----CYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 86 VTACNLHIAVDWIAQ-NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGY 144
++ D++ + N + P +E++ + G V +SG P P+S Y
Sbjct: 341 ISNLTQEQVQDYVNKTNSHL--PAGKQVEISLVNGAKNLV-VSG----P------PQSLY 387
Query: 145 LFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDLKF---FSAFYRNLSKGNIHI 201
K A +GLD Q+ I + + +F S F+ +L +
Sbjct: 388 GLNLTLRKAK--APSGLD---QS----RIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 202 ISLSNLSDV--STISMKPYGDSYLKDIKIYSKDAQTGTNPCGVNNGGCAELC 251
I D+ + +S ++ I +Y D G++ ++ +
Sbjct: 439 I----NKDLVKNNVSFNA---KDIQ-IPVY--DTFDGSDLRVLSGSISERIV 480
Score = 53.1 bits (127), Expect = 3e-07
Identities = 83/586 (14%), Positives = 178/586 (30%), Gaps = 193/586 (32%)
Query: 63 TIEMAFMDGTKRETVVSQKKYPAVT------ACNLHIAVDWIAQNIYWSDPKENVIE-VA 115
++E + V + + L + A + D E V
Sbjct: 15 SLEHVLL--------VPTASFFIASQLQEQFNKILPEPTEGFAAD----DEPTTPAELVG 62
Query: 116 RLTGQYRYVLISGGVDQPSALAVDP---------ESGYLFWSESGK-IPLIARAGLDGKK 165
+ G +S V+ D E+ YL G I +A A L +
Sbjct: 63 KFLG-----YVSSLVEPSKVGQFDQVLNLCLTEFENCYL----EGNDIHALA-AKLLQEN 112
Query: 166 QTILA--QEII------MPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLSDVSTISMKP 217
T L +E+I + D K SA +R + +GN ++++
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI------------- 159
Query: 218 YG-----DSYLKDI-KIYSKDAQTGTNPCGVNNGGCAELCLYNG-VSAVCACAHGVVAQD 270
+G D Y +++ +Y Y+ V + + +++
Sbjct: 160 FGGQGNTDDYFEELRDLYQ---------------------TYHVLVGDLIKFSAETLSEL 198
Query: 271 GKSCSEYDAFIMYSRVNRIDSIH-MTDKSD------LNSPFESIRNSTMMKNIIEL---- 319
++ DA ++++ ++ + + + S+ L S S +I +
Sbjct: 199 IRT--TLDAEKVFTQG--LNILEWLENPSNTPDKDYLLSIPISC-------PLIGVIQLA 247
Query: 320 SYDYKRKTLFYSDIQKGTINSVFFNGSNHR------VLLERQGSVE---GLAYEYVHNYL 370
Y K L ++ G + S + H V + S E + + L
Sbjct: 248 HYVVTAKLLGFT---PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT-VL 303
Query: 371 YW----------TCNNDATINKIDLD------SPKAQRIVVVRLGQHDKPRGIDIDSCDS 414
++ + +I + L+ SP ++ + + +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP----MLSIS--------NLTQEQVQD 351
Query: 415 RIYWTNWNSHLPSIQRAFFSGF-GTESIITTDIT-MPNAL-ALDHQAEKLFWGDARLDKI 471
+ TN SHLP+ ++ S G ++++ ++ P +L L+ K + LD+
Sbjct: 352 YVNKTN--SHLPAGKQVEISLVNGAKNLV---VSGPPQSLYGLNLTLRKAK-APSGLDQ- 404
Query: 472 ERCDYDGTNRIVLSK-----------IS-PLH-PFDMAVYGEFIFWTDWVIHAVLRANK- 517
+RI S+ ++ P H + + I + A
Sbjct: 405 --------SRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDI 455
Query: 518 -------YTGEEVYTLRKNIRRPMGIVAISDNLD--ACAKTPCRHL 554
+ G ++ L +I + I + + H+
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 35.0 bits (80), Expect = 0.11
Identities = 45/307 (14%), Positives = 85/307 (27%), Gaps = 119/307 (38%)
Query: 308 RNSTMMKNIIELSYDYKRKTLFYS--DIQKG--TINSVFFNGSNHRVLLERQGSVEGLAY 363
+ S +++ + ++ + T +S DI ++ F G + + E + +
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN---YSAMIF 1693
Query: 364 EYVHNYLYWTCNNDATIN----KIDLDSPK--------AQ-RIVVVRLGQHDKPRGIDID 410
E + + T IN S K Q + ++
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM-------------- 1739
Query: 411 SCDSRIYWTNWNSHLPSIQRAFFSGF--GTE-SIITTDITMPNALALDHQAEKLFWGDA- 466
+ + + S A F+G G E + ALA A+ +
Sbjct: 1740 ---EKAAFEDLKSKGLIPADATFAGHSLG-EYA----------ALA--SLADVMSIESLV 1783
Query: 467 RL--------------DKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAV 512
+ D++ R +Y + ++P +A F + + + V
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYG---------MIAINPGRVAA----SFSQEALQYVV 1830
Query: 513 LRANKYTGEEVYTLRKNIRRPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVC 572
R K TG V IV N N E Q V
Sbjct: 1831 ERVGKRTGWLVE-----------IV-----------------NYNV-------ENQQYVA 1855
Query: 573 SCFTGKV 579
+ G +
Sbjct: 1856 A---GDL 1859
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 52.7 bits (127), Expect = 1e-07
Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 10/176 (5%)
Query: 370 LYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQ 429
+++T N I +I + + P I + S D+ +++T ++ +I
Sbjct: 112 IWFTEMNGNRIGRIT---DDGKIREYELPNKGSYPSFITLGS-DNALWFTENQNN--AIG 165
Query: 430 RAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISP 489
R SG TE I T + P + + + L++ + +KI R G
Sbjct: 166 RITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRITTSGEITEFKIPTPN 224
Query: 490 LHPFDMAV--YGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNL 543
P + + +++T+W + + R E Y ++ P GI + +
Sbjct: 225 ARPHAITAGAGID-LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETI 279
Score = 46.9 bits (112), Expect = 1e-05
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 9/147 (6%)
Query: 399 GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFG--TESIITTDITMPNALALDH 456
Q P GI + +++ T ++ I + G TE + T L +
Sbjct: 12 NQDTGPYGITVSD-KGKVWITQHKAN--MISC--INLDGKITEYPLPTPDAKVMCLTISS 66
Query: 457 QAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGE-FIFWTDWVIHAVLRA 515
++++ + +KI R G + P+ + I++T+ + + R
Sbjct: 67 D-GEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRI 125
Query: 516 NKYTGEEVYTLRKNIRRPMGIVAISDN 542
Y L P I SDN
Sbjct: 126 TDDGKIREYELPNKGSYPSFITLGSDN 152
Score = 37.3 bits (87), Expect = 0.011
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
I +++ + N I +G+ I +P A+ L+++E G
Sbjct: 188 ITKG-NDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAG-IDLWFTEWG 244
Score = 36.9 bits (86), Expect = 0.016
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 92 HIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
I + +++++ + N I +G I P + L++ E
Sbjct: 145 FITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGN-DDALWFVEII 202
Score = 35.4 bits (82), Expect = 0.041
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 69 MDGTKRE-TVVSQKKYPAVTACNLHIAVDWIAQ-NIYWSDPKENVIEVARLTGQYRYVLI 126
M+ +E + +Q P I V + ++ + K N+I L G+ +
Sbjct: 1 MEFKLQELNLTNQDTGPY------GITVS--DKGKVWITQHKANMISCINLDGKITEYPL 52
Query: 127 SGGVDQPSALAVDPESGYLFWSESG 151
+ L + G ++++E+
Sbjct: 53 PTPDAKVMCLTISS-DGEVWFTENA 76
Score = 33.1 bits (76), Expect = 0.26
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 101 NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
+++++ N I G + + P + P +G ++++E
Sbjct: 69 EVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMN 118
Score = 31.5 bits (72), Expect = 0.67
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
I +I++++ N I G+ R + PS + + L+++E+
Sbjct: 104 ITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQ 160
Score = 30.0 bits (68), Expect = 2.0
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 152
I ++++++ N I I +P + D E+ + F E K
Sbjct: 230 ITAG-AGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIW-FAMECDK 287
Query: 153 I 153
I
Sbjct: 288 I 288
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 45.8 bits (109), Expect = 4e-07
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 593 CSEHDFKCSDG-MCIPFNQTCDRVYNCHDKSDE 624
C+ FKC+DG CI CD VY+C D SDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 28.4 bits (64), Expect = 0.76
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 629 CAMRDCRPGYFKCDNNK-CILSS 650
+ +C FKC + CI S
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSR 24
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 45.0 bits (107), Expect = 7e-07
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 593 CSEHDFKC-SDGMCIPFNQTCDRVYNCHDKSDE 624
C +F+C DG+CIP CD +C D SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 3e-06
Identities = 80/516 (15%), Positives = 149/516 (28%), Gaps = 147/516 (28%)
Query: 69 MDGT-KRETVVSQKKYPAVTACNLHIAVDWIAQNIYW------SDPKENVIEVARLTGQY 121
+ G+ K T V A+ C + + I+W + P+ + + +L Q
Sbjct: 158 VLGSGK--TWV------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 122 RYVLISGGVDQPSALAVDPESGY-----LFWSESGKIPLIARAGLDGKKQTILAQEIIMP 176
S D S + + S L S+ + L+ L
Sbjct: 210 DPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LL-------------- 251
Query: 177 IKDITLDLKFFSAFYRNLS---------KGNIHIISLSNLSDVSTISM-KPYGDSYLKDI 226
++ + K ++AF NLS K +S + + +S +K +
Sbjct: 252 --NVQ-NAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 227 --KIYSKDAQT------GTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD 278
K Q TNP + AE +DG + +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRL--SIIAESI-----------------RDGLATWDN- 346
Query: 279 AFIMYSRVNRIDSIHMTDKSDLN--SPFESIRNSTMMKNIIELSYDYKRKTL--FYSDIQ 334
+ VN D + +S LN P E R ++ S L + D+
Sbjct: 347 ----WKHVN-CDKLTTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 335 KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYW----TCNNDATINKIDLDSPKA 390
K + V N + L+E+Q + + + +Y N+ +++ +D
Sbjct: 401 KSDVMVV-VNKLHKYSLVEKQP--KESTI-SIPS-IYLELKVKLENEYALHRSIVDH--- 452
Query: 391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNS-HLPSIQRA-FFSGFGTESIITTDITM 448
+ + + D Y+ + HL +I+ + F
Sbjct: 453 -----YNIPKTFDSDDLIPPYLDQ--YFYSHIGHHLKNIEHPERMTLF------------ 493
Query: 449 PNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWV 508
+ LD + + KI +D T I + Y +I D
Sbjct: 494 -RMVFLD-----FRFLEQ---KIR---HDSTAWNASGSILNTLQ-QLKFYKPYICDND-- 538
Query: 509 IHAVLRANKYTGEEVYTLRKNIRRPMGIVAISDNLD 544
KY V + + + + S D
Sbjct: 539 -------PKYE-RLVNAILDFLPKIEENLICSKYTD 566
Score = 48.3 bits (114), Expect = 9e-06
Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 49/206 (23%)
Query: 52 MFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLH-IAVDWIAQNIYWSDPKEN 110
+ W +V K V M ++ + ++V +K P + ++ I ++ + EN
Sbjct: 394 LIWFDVIKSDV---MVVVNKLHKYSLV--EKQPKESTISIPSIYLELKVKL-------EN 441
Query: 111 VIEV-ARLTGQYRYVLISGGVDQPSALAVDPESGYLFW---------SESGKIPLIARAG 160
+ + Y I D L Y + ++ L
Sbjct: 442 EYALHRSIVDHYN---IPKTFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 161 LD-----GK-KQTILAQEIIMPIKDITLDLKFFSAFY---------------RNLSKGNI 199
LD K + A I + LKF+ + L K
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 200 HIISLSNLSDVSTISMKPYGDSYLKD 225
++I S +D+ I++ ++ ++
Sbjct: 558 NLIC-SKYTDLLRIALMAEDEAIFEE 582
Score = 47.5 bits (112), Expect = 1e-05
Identities = 68/467 (14%), Positives = 139/467 (29%), Gaps = 118/467 (25%)
Query: 122 RYVLISGGVD----QPSALAVDPESG--YLFWSESGKIPLIARAGLDGKKQT---ILAQE 172
+ +L +D D SG LFW+ K + + ++ + L
Sbjct: 43 KSILSKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 173 IIMPIKDITLDLKFFSAFYRNLSKGNIHIISLSNLS---DVSTISMKPYGDSYLKDIKIY 229
I + ++ + + R+ + + + N+S + K++ I
Sbjct: 98 IKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 230 SKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQ-DGK-------SCSEYDAFI 281
GV G + + VC ++ V + D K +C+ + +
Sbjct: 157 -----------GV--LGSGKTWV---ALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 282 -----MYSRVNRIDSIHMTDKSDLNSPFESIRNSTMMKNIIELSYDYKRKTLFYSDIQKG 336
+ +++ + S++ SI+ ++ +++ Y+ L ++Q
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSK-PYENCLLVLLNVQNA 256
Query: 337 TINSVFFNGSNHRVLL-ERQGSV-----EGLAYEYVHNYLYWTCNNDAT-------INKI 383
+ F ++LL R V ++ T D ++
Sbjct: 257 KAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 384 DLDSPK-AQRIVVVRLGQHDKPRGIDI--DSC-DSRIYWTNWN---------------SH 424
D P+ PR + I +S D W NW +
Sbjct: 315 PQDLPREVLTT---------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 425 L-PSIQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIV 483
L P+ R F S+ +P L L L W D I+ N++
Sbjct: 366 LEPAEYRKMFDRL---SVFPPSAHIPTIL-L-----SLIWFD----VIKSDVMVVVNKLH 412
Query: 484 LSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEEVYTLRKNI 530
+ P + + I ++ K E Y L ++I
Sbjct: 413 KYSLVEKQPKESTIS----------IPSIYLELKVKLENEYALHRSI 449
Score = 39.8 bits (92), Expect = 0.003
Identities = 41/260 (15%), Positives = 75/260 (28%), Gaps = 93/260 (35%)
Query: 425 LPSIQRAFFSGFG-------TESIITTD-----ITMPNALALDHQAEKLFWG-------- 464
L + AF F +SI++ + I +A +LFW
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA---VSGTLRLFWTLLSKQEEM 78
Query: 465 -DARLDKIERCDYDG-TNRIVLSKISPLHPFDMAVYGEFIFWTDWVI---HAVLRANKYT 519
++++ R +Y + I + P M + + D + + V R
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL---- 134
Query: 520 GEEVYTLRKNIR--RPMGIVAISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTG 577
+ LR+ + RP V I G + G
Sbjct: 135 -QPYLKLRQALLELRPAKNVLI-------------D--------------GVLGS----G 162
Query: 578 KVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVY-----NCHDKSDEGILYCAMR 632
K + VC + +C + F ++ NC+ S E +L +
Sbjct: 163 K-------TWVALDVCLSYKVQC----KMDFK-----IFWLNLKNCN--SPETVLEMLQK 204
Query: 633 DCRPGYFKCDNNKCILSSHT 652
++ D N S H+
Sbjct: 205 LL----YQIDPNWTSRSDHS 220
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 41.6 bits (98), Expect = 2e-05
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 590 NTVCSEHDFKCSDG-MCIPFNQTCDRVYNCHDKSDE 624
C F C +C+P CD +C D +DE
Sbjct: 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 27.7 bits (62), Expect = 1.6
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 629 CAMRDCRPGYFKCDN-NKCI 647
+ C P F C + C+
Sbjct: 2 SEGKTCGPSSFSCPGTHVCV 21
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 39.7 bits (93), Expect = 6e-05
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 590 NTVCSEHDFKCSDG-MCIPFNQTCDRVYNCHDKSDE 624
+ CS F C + C+P C+ V +C +++DE
Sbjct: 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 26.6 bits (59), Expect = 2.6
Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 634 CRPGYFKCDN-NKCILSS 650
C GYF C N KC+
Sbjct: 7 CSLGYFPCGNITKCLPQL 24
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 38.2 bits (89), Expect = 2e-04
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 590 NTVCSEHDFKCSD-----GMCIPFNQTCDRVYNCHDKSDE 624
C F+CS+ G C P + CD +C D DE
Sbjct: 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 37.8 bits (88), Expect = 3e-04
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 590 NTVCSEHDFKCSD-----GMCIPFNQTCDRVYNCHDKSDE 624
++ C F+CS+ G C P + CD +C D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 37.3 bits (87), Expect = 4e-04
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 593 CSEHDFKCSDG--MCIPFNQTCDRVYNCHDKSDE 624
C H+ C CIP + CD +C DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 40.7 bits (95), Expect = 0.001
Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 28/196 (14%)
Query: 316 IIELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVL--LERQGS-VEGLAYEYVHNYLYW 372
+E + L+ S +Q + F+ ++ G + L Y+ + + +Y
Sbjct: 171 FVETISIPEHNELWVSQMQANAV--HVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYC 228
Query: 373 TCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAF 432
+ I+ ID + ++ + + + PRG+ + +Y +++
Sbjct: 229 SNWISEDISVIDRKT----KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE----- 279
Query: 433 FSGFGTESIITTD----------ITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRI 482
SG G I + D + + K++ D KIE YD +
Sbjct: 280 -SGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEV--YDLKEKK 336
Query: 483 VLSKIS-PLHPFDMAV 497
V I P +A+
Sbjct: 337 VQKSIPVFDKPNTIAL 352
Score = 34.9 bits (80), Expect = 0.070
Identities = 15/137 (10%), Positives = 41/137 (29%), Gaps = 16/137 (11%)
Query: 368 NYLYWTCNNDATINKIDLDSPK-AQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLP 426
L D ++ +D++S + + + + + ++ + ++
Sbjct: 134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV 193
Query: 427 SIQRAFFSGFGTESIITTDIT--MPNALALDHQAEKLF---WGDARLDKIERCDYDGTNR 481
+ F T D+T L D + ++ W + I D +
Sbjct: 194 HV----FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI-----DRKTK 244
Query: 482 IVLSKIS-PLHPFDMAV 497
+ + K P + +
Sbjct: 245 LEIRKTDKIGLPRGLLL 261
Score = 31.8 bits (72), Expect = 0.76
Identities = 6/73 (8%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 352 LERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDS 411
E + + ++ + + + +D + + I + G +P+ +
Sbjct: 75 KEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG--FQPKSVRFID 132
Query: 412 CDSRIYWTNWNSH 424
++R+
Sbjct: 133 -NTRLAIPLLEDE 144
Score = 31.0 bits (70), Expect = 1.3
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 332 DIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPK-A 390
DI G + +++ HN L+ + ++ DL +
Sbjct: 150 DINSGQTVRLSPPEKY-----KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204
Query: 391 QRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH 424
+ + G+ + + D +Y +NW S
Sbjct: 205 ATVDLT--GKW--SKILLYDPIRDLVYCSNWISE 234
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 36.9 bits (86), Expect = 0.003
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 229 YSKDAQTGTNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSCSEYD 278
GTN C NNGGC+ +C + C C G + C + D
Sbjct: 21 LYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDID 70
Score = 32.3 bits (74), Expect = 0.11
Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRS-----CTINTVCS 594
C NG C +C D C C G L+ R C CS
Sbjct: 32 CLDNNGGCSYVCN-DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS 79
Score = 30.4 bits (69), Expect = 0.54
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 555 NGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C +C + G C C G L ++C
Sbjct: 75 PDTCSQLCV-NLEGGYKCQCEEGFQLDPHTKAC 106
Score = 28.1 bits (63), Expect = 3.1
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 243 NNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
+ C++LC+ C C G + K+C
Sbjct: 74 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 38.9 bits (91), Expect = 0.003
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 547 AKTPCRH-LNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCS 594
AK C C C CSC G L ED++ C + C+
Sbjct: 1 AKNECHPERTDGCQHFCL-PGQESYTCSCAQGYRLGEDHKQCVPHDQCA 48
Score = 34.3 bits (79), Expect = 0.096
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 236 GTNPCGV-NNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCS 275
N C GC CL S C+CA G + +D K C
Sbjct: 1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCV 42
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 38.2 bits (89), Expect = 0.006
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 22/149 (14%)
Query: 356 GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSR 415
+ G +Y + ++ ID + V P+G+ + +
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA----GSSPQGVAVSPDGKQ 87
Query: 416 IYWTNWNSHLPSIQRAFFSGFGTESIITTDIT---MPNALALDHQAEKLF---WGDARLD 469
+Y TN S S+ + ++ T + P LAL +KL+ GD +
Sbjct: 88 VYVTNMASSTLSVIDT-----TSNTVAGT-VKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 470 KIERCDYDGTNRIVLSKIS-PLHPFDMAV 497
I + + V++ +S P +AV
Sbjct: 142 VI-----NTVTKAVINTVSVGRSPKGIAV 165
Score = 36.3 bits (84), Expect = 0.029
Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 325 RKTLFYSDIQKGTINSVFFNGSNHRVL--LERQGSVEGLAYEYVHNYLYWTCNNDATINK 382
++ ++ + + + + V+ + S +G+A +Y T +T++
Sbjct: 43 GTKVYVANAHSNDV--SIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSV 100
Query: 383 IDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH 424
ID S V + P G+ + ++Y TN
Sbjct: 101 IDTTSNT----VAGTVKTGKSPLGLALSPDGKKLYVTNNGDK 138
Score = 32.4 bits (74), Expect = 0.48
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 368 NYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPS 427
+ Y + I+ ID+ S K + V P G I +++Y N +S+ S
Sbjct: 2 TFAYIANSESDNISVIDVTSNKVTATIPV----GSNPMGAVISPDGTKVYVANAHSNDVS 57
Query: 428 -IQRAFFSGFGTESIITT--DITMPNALALDHQAEKLF---WGDARLDKIERCDYDGTNR 481
I A T ++I T + P +A+ ++++ + L I D T+
Sbjct: 58 IIDTA------TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVI-----DTTSN 106
Query: 482 IVLSKIS-PLHPFDMAV 497
V + P +A+
Sbjct: 107 TVAGTVKTGKSPLGLAL 123
Score = 31.3 bits (71), Expect = 0.95
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 368 NYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPS 427
+Y + +I+ ID + V+ + P GI ++ ++ Y TN + + +
Sbjct: 170 TKVYVANFDSMSISVIDTVTNS----VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT 225
Query: 428 I 428
+
Sbjct: 226 V 226
Score = 29.0 bits (65), Expect = 5.1
Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 326 KTLFYSDIQKGTINSVFFNGSNHRVL--LERQGSVEGLAYEYVHNYLYWTCNNDA--TIN 381
++ ++ +I SV + + V+ ++ + + G+A Y T + T++
Sbjct: 170 TKVYVANFDSMSI-SVI-DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227
Query: 382 KIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWN 422
ID + K + R+ P GI + ++Y
Sbjct: 228 MIDTGTNK----ITARIPVGPDPAGIAVTPDGKKVYVALSF 264
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 37.2 bits (87), Expect = 0.011
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 373 TCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAF 432
T NN + K++ +S VV+ P GI +D +Y T N++ + +
Sbjct: 168 TDNN--RVVKLEAES---NNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTN--QVVKLL 219
Query: 433 FSGFGTESIITTDITMPNALALD 455
+ + T + P A+A+D
Sbjct: 220 AGSTTSTVLPFTGLNTPLAVAVD 242
Score = 34.9 bits (81), Expect = 0.052
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLF 146
IAVD A +Y ++ N + VL G++ P A+AVD ++
Sbjct: 197 IAVD-EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVY 248
Score = 33.0 bits (76), Expect = 0.25
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 398 LGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGFGTESIITTDITMPNALALDHQ 457
+ P G+ +DS +Y T+ + + + GT + + P LA+D
Sbjct: 20 IDFRLSPSGVAVDS-AGNVYVTSEGMY-GRVVKLATGSTGTTVLPFNGLYQPQGLAVDG- 76
Query: 458 AEKLFWGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGE-FIFWTDWVIHAVLR 514
A ++ D + N+ VL +P +AV + ++ D + V++
Sbjct: 77 AGTVYVTDFNNRVVTLAA-GSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVK 133
Score = 32.6 bits (75), Expect = 0.36
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLF 146
+AVD +Y +D N + + + VL G++ P +AVD SG ++
Sbjct: 113 LAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVY 164
Score = 29.1 bits (66), Expect = 3.8
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
+AVD A +Y +D V+ +A + VL G++ P LAVD G ++ ++ G
Sbjct: 72 LAVD-GAGTVYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDT-QGAVYVADRG 127
Score = 29.1 bits (66), Expect = 4.3
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 93 IAVDWIAQNIYWSDPKEN-VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
+AVD A N+Y + + VL G+ QP LAVD +G ++ ++
Sbjct: 29 VAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFN 86
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 37.3 bits (87), Expect = 0.012
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 152
I I++++ N I + + +P + G ++++ K
Sbjct: 235 ITAG-KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGK-DGSVWFALKCK 292
Query: 153 I 153
I
Sbjct: 293 I 293
Score = 37.3 bits (87), Expect = 0.012
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
I + +++++ + N I TG+ + P + G L++ E
Sbjct: 151 ITLGS-DNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIM 207
Score = 36.1 bits (84), Expect = 0.025
Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 71 GTKRETVVSQKKYPAVTACN--LHIAVDWIAQ-NIYWSDPKENVIEVARLTGQYRYVLIS 127
G++ +++ + I ++++ K N I +G+ + +
Sbjct: 1 GSEAWMNFYLEEFNLSIPDSGPYGITSS--EDGKVWFTQHKANKISSLDQSGRIKEFEVP 58
Query: 128 GGVDQPSALAVDPESGYLFWSESG 151
+ L V G ++++E+G
Sbjct: 59 TPDAKVMCLIVSS-LGDIWFTENG 81
Score = 33.1 bits (76), Expect = 0.23
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
I +++ + N I TG+ I +P A+ ++++E G
Sbjct: 193 ITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEWG 249
Score = 31.9 bits (73), Expect = 0.57
Identities = 6/51 (11%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 101 NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
+I++++ N I G + + P + +G +++++
Sbjct: 74 DIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLN 123
Score = 29.6 bits (67), Expect = 2.8
Identities = 7/59 (11%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 93 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 151
I +I+++ + I G + P+ + + L+++E+
Sbjct: 109 ITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGS-DNALWFTENQ 165
Score = 29.2 bits (66), Expect = 4.2
Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Query: 431 AFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIVLSKISPL 490
A+ + + E ++ + P + K+++ + +KI D G +
Sbjct: 4 AWMNFYLEEFNLSIPDSGPYGITSSED-GKVWFTQHKANKISSLDQSGRIKEFEVPTPDA 62
Query: 491 HPFDMAVYGE-FIFWTDWVIHAVLRANKYTGEEVYTLRKNIRRPMGIVAISD 541
+ V I++T+ + + + +K G Y L + P GI +
Sbjct: 63 KVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN 114
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 35.8 bits (83), Expect = 0.013
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
+ D NG C+ C + C C G L+ D SC
Sbjct: 84 HKDDQLICVNE--NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 27.7 bits (62), Expect = 6.8
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 237 TNPCGVNNGGCAELCL-YNGVSAVCACAHGVV-AQDGKSCSE 276
NGGC + C + G C C G DG SC+
Sbjct: 90 ICVN--ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 37.4 bits (87), Expect = 0.013
Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 23/203 (11%)
Query: 321 YDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQG---SVEGLAYEYVHNYLYWTCNND 377
D T++ S I K ++ V +G N ++ Q GLA + LY T N D
Sbjct: 148 ADDATNTVYISGIGKESVIWVV-DGGNIKLKTAIQNTGKMSTGLALDSEGKRLY-TTNAD 205
Query: 378 ATINKIDLDSPK-AQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQRAFFSGF 436
+ ID K R ++ G+ I +D+ R + T+ + +
Sbjct: 206 GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT----- 260
Query: 437 GTESIITT-DITMPNALALDHQAEKLF---WGDARLDKIERCDYDGTNRIVLSKIS-PLH 491
+I+ A+ + + + ++ I D + V+ P H
Sbjct: 261 RNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVI-----DAKSYKVVKTFDTPTH 315
Query: 492 PFDMAV--YGEFIFWTDWVIHAV 512
P +A+ G+ ++ +
Sbjct: 316 PNSLALSADGKTLYVSVKQKSTK 338
Score = 33.2 bits (76), Expect = 0.22
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 356 GSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSR 415
G L++ ++ + ID + + + +V+ D+ R ++ R
Sbjct: 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVL----DDRKRTEEVRPLQPR 144
Query: 416 IYWTNWNSHLPSIQRAFFSGFGTESIITT 444
+ ++ + SG G ES+I
Sbjct: 145 ELVADDATN-----TVYISGIGKESVIWV 168
Score = 28.6 bits (64), Expect = 6.7
Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 23/153 (15%)
Query: 5 VSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSI----------AVWPVKGKMFW 54
V+ + + + + E ++ D + ++I A+ +++
Sbjct: 147 VADDATNTVYISGIGKESVIWVV-----DGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT 201
Query: 55 SNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEV 114
+N +++TI+ A R+ ++ K I++D Q + +D K + V
Sbjct: 202 TNADGELITIDTADNKILSRKKLLDDGKEHFFIN----ISLDTARQRAFITDSKAAEVLV 257
Query: 115 ARL-TGQYRYVLISGGVDQPSALAVDPESGYLF 146
G +L + A+ +P +
Sbjct: 258 VDTRNGN---ILAKVAAPESLAVLFNPARNEAY 287
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 35.0 bits (81), Expect = 0.015
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 237 TNPCGVNNGGCAELCLYNGVSAVCACAHGVVAQDGKSC 274
N C C N A C C G + DG C
Sbjct: 41 RCQMFCNQTACPADCDPNT-QASCECPEGYILDDGFIC 77
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/96 (17%), Positives = 24/96 (25%), Gaps = 27/96 (28%)
Query: 554 LNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCD 613
NC+ C+ + +C C G + C C+ C CD
Sbjct: 8 FRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHR-----CQMF---CNQTAC---PADCD 56
Query: 614 RV--YNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
+C C GY D C
Sbjct: 57 PNTQASCE--------------CPEGYILDDGFICT 78
Score = 28.9 bits (65), Expect = 2.4
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 243 NNGGCAELCLYNGVSAVCACAHG--VVAQDGKSC 274
N G C+ +C + C C + Q G C
Sbjct: 85 NGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 36.6 bits (84), Expect = 0.020
Identities = 14/116 (12%), Positives = 36/116 (31%), Gaps = 12/116 (10%)
Query: 368 NYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPS 427
++ +ID ++ ++ +LG P + ++ +YW N +
Sbjct: 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDW--PSEVQLNGTRDTLYWINNDIWRMP 250
Query: 428 IQRAFFSGFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTNRIV 483
++ + T L ++ +++ DA DY +
Sbjct: 251 VE---ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAI-------DYQQQGIVY 296
Score = 36.2 bits (83), Expect = 0.027
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 10/111 (9%)
Query: 318 ELSYDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNND 377
E ++ Y TL Y D + + F +N L G V + + NN
Sbjct: 9 EGNFQYSNATLSYYDPATCEVENEVFYRANGFKL----GDV-AQSMVIRDGIGWIVVNNS 63
Query: 378 ATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSI 428
I ID+++ K + PR I D + Y T + I
Sbjct: 64 HVIFAIDINTFKEVGRI----TGFTSPRYIHF-LSDEKAYVTQIWDYRIFI 109
Score = 29.2 bits (65), Expect = 4.5
Identities = 7/56 (12%), Positives = 15/56 (26%)
Query: 368 NYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNS 423
Y T D I I+ + + + + + +Y W+
Sbjct: 95 EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY 150
Score = 28.8 bits (64), Expect = 5.4
Identities = 15/127 (11%), Positives = 36/127 (28%), Gaps = 15/127 (11%)
Query: 33 DTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG-------------TKRETVVS 79
DT T + + + + K + + + TV
Sbjct: 158 DTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK 217
Query: 80 QKKYPAVTACNLHIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 139
Q K+ + + ++ +YW + + V + + L V+
Sbjct: 218 QFKFKLGDWPS-EVQLNGTRDTLYWINNDIWRMPVE-ADRVPVRPFLEFRDTKYYGLTVN 275
Query: 140 PESGYLF 146
P +G ++
Sbjct: 276 PNNGEVY 282
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 36.9 bits (85), Expect = 0.020
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 23/108 (21%)
Query: 547 AKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTIN------TVCSEHDFKC 600
A T CR CD + E C+ + C + C + C
Sbjct: 267 AGTVCRRARDECD----VPEH----CTG--------QSAECPRDQLQQNGKPCQNNRGYC 310
Query: 601 SDGMCIPFNQTCDRVYNCHDKSDEGILYCA-MRDCRPGYFKCDNNKCI 647
+G C C ++ + + ++ GY + +N + I
Sbjct: 311 YNGDCPIMRNQCISLFGSRANVAKDSCFQENLKGSYYGYCRKENGRKI 358
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 35.0 bits (81), Expect = 0.032
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 540 SDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCT-INTVCSEHDF 598
+L TPC + + +++C G I+ C E
Sbjct: 78 CCSLGKAWGTPC-EMCPAVNTS-----EYKILCPGGEGFRPNPITVILEDID-ECQELPG 130
Query: 599 KCSDGMCI 606
C G CI
Sbjct: 131 LCQGGKCI 138
Score = 28.1 bits (63), Expect = 5.3
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 23/98 (23%)
Query: 543 LDACAKT--PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKC 600
L+ R N D + + G CS G + + + C++
Sbjct: 34 LNPTRVGCVDTRSGNCYLDIRPR-GDNGDTACSNEIGVGVSKASCCCSLGKAWG------ 86
Query: 601 SDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGY 638
+ P T + C G+
Sbjct: 87 TPCEMCPAVNTSEYKILCP--------------GGEGF 110
Score = 27.3 bits (61), Expect = 9.8
Identities = 2/38 (5%), Positives = 4/38 (10%), Gaps = 1/38 (2%)
Query: 238 NPCGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSC 274
+ +C G
Sbjct: 82 GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVIL 119
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 34.2 bits (79), Expect = 0.047
Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 19/109 (17%)
Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCT-------INTVCSEHDF 598
C +PC NG C + G +C C + L C TV
Sbjct: 7 CESSPCI--NGVC-----KNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID-GRC 58
Query: 599 KCSDGMCIPFNQTCDRVYNCHDKS-DEGILYCAMRDCRPGYFKCDNNKC 646
+ + +Q C + + C GY + +C
Sbjct: 59 EININGATLKSQCCSSLGAAWGSPCTLCQVDPI---CGKGYSRIKGTQC 104
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 33.1 bits (76), Expect = 0.057
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
C NG C C L+E G CSC G L +D C
Sbjct: 57 CSLDNGGCTHYC-LEEVGWRRCSCAPGYKLGDDLLQC 92
Score = 31.6 bits (72), Expect = 0.20
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 240 CGVNNGGCAELCLYNGVSAVCACAHG-VVAQDGKSCSE 276
C ++NGGC CL C+CA G + D C
Sbjct: 57 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP 94
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 31.9 bits (73), Expect = 0.099
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 551 CRHLNGNCDD-ICKLDETGQVVCSCFTGKVLMEDNRSCT-INTVCSEHDFKCSDGMCIPF 608
C C +CK + G C C G ++SC I+ +CS+ MC
Sbjct: 6 CSLKPSICGTAVCK-NIPGDFECECPEGYRYNLKSKSCEDID--------ECSENMC--- 53
Query: 609 NQTC 612
Q C
Sbjct: 54 AQLC 57
Score = 27.6 bits (62), Expect = 3.3
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 238 NPCGVNNGGCAE-LCLYNGVSAVCACAHG-VVAQDGKSCSEYD 278
+ C + C +C C C G KSC + D
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDID 46
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 34.3 bits (78), Expect = 0.11
Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 16/157 (10%)
Query: 339 NSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIVVVRL 398
N F S G ++Y +N LY + ++ + + A ++
Sbjct: 63 NKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHATQLATSVD 121
Query: 399 GQHDK-PRGIDIDSCDSRIYWTN------WNSHLPSIQRAFFSG--------FGTESIIT 443
G K + +D +Y+T+ + + +G +++
Sbjct: 122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181
Query: 444 TDITMPNALALDHQAEKLFWGDARLDKIERCDYDGTN 480
++ +P + + + + +I + +G
Sbjct: 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK 218
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 34.5 bits (78), Expect = 0.13
Identities = 15/60 (25%), Positives = 23/60 (38%)
Query: 584 NRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDN 643
++ C I ++ F+C G CI C+ +C D SDE C Y +
Sbjct: 109 SKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPS 168
Score = 29.1 bits (64), Expect = 5.6
Identities = 20/122 (16%), Positives = 29/122 (23%), Gaps = 21/122 (17%)
Query: 540 SDNLDACAKTPCRHL--NGNCDDICKLDETGQVVCSCFTG-KVLMEDNRSCTINTVCSEH 596
+ C H G+C D +L+ + K +C CS
Sbjct: 796 KFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSAS 855
Query: 597 DFKCSDGMCIPFNQTCDRVYNCHD--------KSDEGILYCAMRDCRPGYFKCDNNKCIL 648
KC C C K + C G +C N K +
Sbjct: 856 TSKC----------VCLLPPQCFKGGNQLYCVKMGSSTSEKTLNICEVGTIRCANRKMEI 905
Query: 649 SS 650
Sbjct: 906 LH 907
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 33.6 bits (77), Expect = 0.19
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 367 HNYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLP 426
+ + T + T+ +I+ + + + +DI D +H
Sbjct: 51 CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS--MADVDITPDDQFAVTVTGLNHPF 108
Query: 427 SI 428
++
Sbjct: 109 NM 110
Score = 30.5 bits (69), Expect = 1.6
Identities = 8/57 (14%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 368 NYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH 424
N+ + +I ++ +P+ ++ +G ++ P I + S +Y ++
Sbjct: 188 NFAFVANLIGNSIGILETQNPENIT-LLNAVGTNNLPGTIVVSRDGSTVYVLTESTV 243
Score = 29.7 bits (67), Expect = 2.9
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 5/87 (5%)
Query: 327 TLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLD 386
+F + GT++ V G + +A L+ + N + +
Sbjct: 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303
Query: 387 SPKAQRIVVVRLGQHDKPRGIDIDSCD 413
+ + GI I D
Sbjct: 304 GKVVGYVAGIE-----ANGGIAICHPD 325
Score = 29.4 bits (66), Expect = 3.8
Identities = 4/63 (6%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 368 NYLYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDK------PRGIDIDSCDSRIYWTNW 421
+ +Y + + + S + G + ++ +++++ +
Sbjct: 233 STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN 292
Query: 422 NSH 424
S
Sbjct: 293 ISR 295
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 33.1 bits (76), Expect = 0.22
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 551 CRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCS 594
C C CSC G L ED++ C + C+
Sbjct: 47 HPERTDGCQHFCL-PGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 30.1 bits (68), Expect = 0.23
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCT 588
C +C + G CSC G L ED SC
Sbjct: 14 GEEDPQPQCQHLCH-NYVGGYFCSCRPGYELQEDRHSCQ 51
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 31.6 bits (72), Expect = 0.33
Identities = 21/115 (18%), Positives = 27/115 (23%), Gaps = 33/115 (28%)
Query: 544 DACAKTPCRHLNGNCDDICKLDETGQVVCSC---FTGKVLMEDNRSCTINTVCSEHDFKC 600
D C PC + G C G C C FT + + C
Sbjct: 1 DICDPNPCEN-GGICLP---GLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAG-PC 55
Query: 601 S------DGMCIPFNQTC-DRV--YNCHDKSDEGILYCAMRDCRPGY--FKCDNN 644
+ G C D Y C C G+ C +N
Sbjct: 56 TPNPCHNGGTCEISEAYRGDTFIGYVCK--------------CPRGFNGIHCQHN 96
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 32.4 bits (74), Expect = 0.42
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 437 GTESIITTDITMPNALAL----DHQAEKLFWGDARLDKIERCDYDG----TNRIVLSKIS 488
G + T PN +A+ D + +L + K+ D G N+ V I
Sbjct: 162 GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP 221
Query: 489 PLHP--FD-MAVYGE-FIFWTDWVIHAVLRANKYTGEEVYTLR 527
H D M + + +W + G+ +R
Sbjct: 222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR 264
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 30.4 bits (68), Expect = 0.44
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 237 TNPCGVNNGGC---AELCLYNGVSAVCACAHGVVAQ--DGKSCSE 276
C NGGC AE + + VC C +G CS
Sbjct: 46 NMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVFCSH 90
Score = 29.6 bits (66), Expect = 0.91
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 550 PCRHLNGNCDD--ICKLDETGQVVCSC 574
C+ NG C CK+++ ++VC C
Sbjct: 48 TCKDKNGGCAPEAECKMNDKNEIVCKC 74
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 31.3 bits (71), Expect = 0.44
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 545 ACAKTPC-RHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTIN 590
A C ++ C C + G CSC L +D ++C +N
Sbjct: 114 ATDINECTDFVDVPCSHFCN-NFIGGYFCSCPPEYFLHDDMKNCGVN 159
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 32.3 bits (74), Expect = 0.44
Identities = 26/198 (13%), Positives = 57/198 (28%), Gaps = 28/198 (14%)
Query: 321 YDYKRKTLFYSDIQKGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATI 380
Y R + +SD+++ + +G + G +L + +
Sbjct: 35 YVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNK-QGHLIACSHGLRRL 92
Query: 381 NKIDLDSPKAQRIVVVRLGQHDK-PRGIDIDSCDSRIYWTNWNSHLPSIQRAF------- 432
+ + + I G+ P + + D +++++ + + +
Sbjct: 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELP 151
Query: 433 ------FSGFGTESIITTDITMPNALAL--DHQAEKLFWGDARLDKIERCDYDG----TN 480
+ GT S D PN LA L D + R +
Sbjct: 152 GRWVFRLAPDGTLSAPIRDRVKPNGLAFLPS---GNLLVSDTGDNATHRYCLNARGETEY 208
Query: 481 RIVLSKISPLHPFD-MAV 497
+ V + P D + V
Sbjct: 209 QGVHFTVEPGKT-DGLRV 225
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 31.0 bits (69), Expect = 0.63
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 15/112 (13%)
Query: 543 LDACAKTPCRHLNGNCDDICKLDETGQVVCSCFT--------GKVLMEDNRSCTINTVCS 594
++ C C C++++ + C C G V D + T C+
Sbjct: 3 METCENVDCGP-----GKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGK--TYRNECA 55
Query: 595 EHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKC 646
+C + + C D G C + Y N C
Sbjct: 56 LLKARCKEQPELEVQYQGKCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRIC 107
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 30.1 bits (67), Expect = 0.64
Identities = 17/111 (15%), Positives = 27/111 (24%), Gaps = 15/111 (13%)
Query: 540 SDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFK 599
++ + + C N + C G C G E C ++
Sbjct: 2 AEASNMSSAHKCIDTNVPENAACYRYLDGTEEWRCLLG--FKEVGGKCVPASIT------ 53
Query: 600 CSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCILSS 650
C N C C D+ + C + C SS
Sbjct: 54 -----CEENNGGCAPEAEC-TMDDKKEVECKCTKEGSEPLF-EGVFCSSSS 97
Score = 30.1 bits (67), Expect = 0.65
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 229 YSKDAQT---GTNPCGVNNGGCAEL--CLYNGVS-AVCACAHG--VVAQDGKSCSE 276
+ + + C NNGGCA C + C C +G CS
Sbjct: 40 FKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGSEPLFEGVFCSS 95
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 29.8 bits (67), Expect = 0.65
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 540 SDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSC---FTGKVLMEDNRSCTINTVCS 594
S + +C++ C + G C VC C F GK SC I+T +
Sbjct: 45 SVPVKSCSEPRCFN-GGTCQQ---ALYFSDFVCQCPEGFAGK-------SCEIDTRAT 91
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 31.5 bits (71), Expect = 0.79
Identities = 20/155 (12%), Positives = 44/155 (28%), Gaps = 16/155 (10%)
Query: 370 LYWTCNNDATINKIDLDSPKAQRIVVVRLGQHDKPRGIDIDSCDSRIYWTNWNSH-LPSI 428
++ T + I I P + + + G+ S + + T WN+ +P +
Sbjct: 45 IFVTNHEVGEIVSIT---PDGNQQIHATVEGK--VSGLAFTS-NGDLVATGWNADSIPVV 98
Query: 429 QRAFFSGFGTESIITTDITMPNALAL---------DHQAEKLFWGDARLDKIERCDYDGT 479
G + D N + D ++ D
Sbjct: 99 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM 158
Query: 480 NRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLR 514
S+ + +G F++ ++ +LR
Sbjct: 159 LARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLR 193
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 31.6 bits (71), Expect = 0.90
Identities = 21/128 (16%), Positives = 34/128 (26%), Gaps = 16/128 (12%)
Query: 539 ISDNLDACAKTPCRHLNGNCDDICKLDETGQ----VVCSCFTGKVLMEDNRSCTINTVCS 594
+S + L D C T + C V + T
Sbjct: 341 LSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQ 400
Query: 595 EHDFKC-----SDGMCIPFNQTCD-----RVYNCHDKSDEGILYCAMRDCRPGYF--KCD 642
E F +D + + C+ + + +G L C + C GY C+
Sbjct: 401 EQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCE 460
Query: 643 NNKCILSS 650
SS
Sbjct: 461 CQTQGRSS 468
>1aun_A PR-5D; antifungal protein, pathogenesis-related protein, osmotin,
thaumatin-like protein; 1.80A {Nicotiana tabacum} SCOP:
b.25.1.1 PDB: 2i0w_A 1pcv_A
Length = 208
Score = 31.0 bits (69), Expect = 0.97
Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 13/158 (8%)
Query: 463 WGDARLDKIERCDYDGTNRIVLSKISPLHPFDMAVYGEFIFWTDWVIHAVLRANKYTGEE 522
AR+ C++DG R + +G+ A N+++ +
Sbjct: 41 TKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKGWGK-----PPNTLAEYALNQFSNLD 95
Query: 523 VYTLR--KNIRRPMGIVAISDNLDACAKTPCRH-LNGNCDDICKLDETGQVVCSCFTGKV 579
+ + PM C C +NG C ++ C+ F G+
Sbjct: 96 FWDISVIDGFNIPMSFGPTKPGPGKCHGIQCTANINGECPGSLRVPGGCNNPCTTFGGQQ 155
Query: 580 LMEDNRSCTINTVCSEHDFKCSDGMCIPFN-----QTC 612
C + +C D P + TC
Sbjct: 156 YCCTQGPCGPTELSRWFKQRCPDAYSYPQDDPTSTFTC 193
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 30.7 bits (69), Expect = 1.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 539 ISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCT 588
++++D C P CD C + G CSC G VL + R+C+
Sbjct: 120 AAEDIDECQVAPGE--APTCDHHCH-NHLGGFYCSCRAGYVLHRNKRTCS 166
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 30.6 bits (69), Expect = 1.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 94 AVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG-GVDQP-SALAVDPESGYLFW 147
VDWI ++N I+ A++ G V++ G P L L W
Sbjct: 107 QVDWIG--------QKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVW 154
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 29.6 bits (67), Expect = 1.5
Identities = 23/120 (19%), Positives = 34/120 (28%), Gaps = 48/120 (40%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSC---FTGKVLMEDNRSCTINTVCSEHDF 598
+ D C +PC++ G C D G+ C+C F G ++C + T
Sbjct: 41 DGDQCETSPCQN-QGKC-----KDGLGEYTCTCLEGFEG-------KNCELFT-----RK 82
Query: 599 KCSDGMCIPFNQTC-DRV--YNCHDKSDEGILYCAMRDCRPGYF---------KCDNNKC 646
CS +Q C + C C GY C
Sbjct: 83 LCSLDNG-DCDQFCHEEQNSVVCS--------------CARGYTLADNGKACIPTGPYPC 127
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 30.6 bits (70), Expect = 1.6
Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 44/196 (22%)
Query: 399 GQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR-----AFFSGFGTESIITTDITMPNALA 453
GQ +P G+ +++ + I + N+H IQ F FG + + PN +A
Sbjct: 27 GQFTEPSGVAVNA-QNDIIVADTNNH--RIQIFDKEGRFKFQFGECGKRDSQLLYPNRVA 83
Query: 454 LDHQAEKLFWG-DARLDKIERCDYDGTNRIVLSKISP---LHPFDMAVYGE-FIFWTDWV 508
+ + + + +I+ + G + K HP + V + I +
Sbjct: 84 VVRNSGDIIVTERSPTHQIQIYNQYGQ---FVRKFGATILQHPRGVTVDNKGRIIVVECK 140
Query: 509 IHAVLRANKYT--GEEVYTLRKN--IRRPMGI-------VAISDNLDACAKTPCRHLNGN 557
+ V+ + G ++ + + P G+ + ISDN +
Sbjct: 141 VMRVI---IFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN------------RAH 185
Query: 558 CDDICKLDETGQVVCS 573
C + + GQ +
Sbjct: 186 C--VKVFNYEGQYLRQ 199
Score = 27.9 bits (63), Expect = 9.9
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 93 IAVDWIAQNIYWSDPKENV-IEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLF 146
+ ++ I +D N + + GQ + Q +A+ + G +
Sbjct: 212 VGIN-SNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDD-GSVV 265
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 30.8 bits (69), Expect = 1.6
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 33/119 (27%)
Query: 545 ACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTIN------TVCSEHDF 598
+ + T CR CD E C+ + C + C ++
Sbjct: 263 SKSGTECRASMSECD----PAEH----CTG--------QSSECPADVFHKNGQPCLDNYG 306
Query: 599 KCSDGMCIPFNQTCDRVYN---------CHDKSDEGILYCAMRDCRPGYFKC--DNNKC 646
C +G C C ++ C +++ +G Y R C ++ KC
Sbjct: 307 YCYNGNCPIMYHQCYDLFGADVYEAEDSCFERNQKGNYYGYCRKENGNKIPCAPEDVKC 365
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 30.4 bits (69), Expect = 1.6
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 12/73 (16%)
Query: 94 AVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG-GVDQPSALAV---DPESGYLFWSE 149
VD +++ A R++L+S QP D Y
Sbjct: 80 KVDLYG--------AVKLMQAAEKAEVKRFILLSTIFSLQPEKWIGAGFDALKDYYIAKH 131
Query: 150 SGKIPLIARAGLD 162
+ L LD
Sbjct: 132 FADLYLTKETNLD 144
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 30.6 bits (68), Expect = 1.7
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMC 605
C KT N + C Q +C G R+CT N C +C
Sbjct: 162 CEKTTI---NNEYNYRCWTTNRCQKMCPSTCG------KRACTENNECC--HPECLGSCS 210
Query: 606 IPFNQT-CDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKCI 647
P N T C C G+ C + C P ++ + +C+
Sbjct: 211 APDNDTAC---VACRHYYYAGV--C-VPACPPNTYRFEGWRCV 247
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 30.3 bits (69), Expect = 1.8
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 437 GTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG-----TNRIVLSKISP 489
+ + N L + ++ D+ ++ DYD +NR + K+
Sbjct: 139 HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK 196
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 30.2 bits (68), Expect = 1.9
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 24/156 (15%)
Query: 335 KGTINSVFFNGSNHRVLLERQGSVEGLAYEYVHNYLYWTCNNDATINKIDLDSPKAQRIV 394
K + V F+ +H ++V+ + TI ID ++ + +
Sbjct: 34 KNNL--VIFHRGDHVW------DGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS 85
Query: 395 VVRLGQHDKPRGIDIDSCDSRIYWTNWNSHLPSIQR----------AFFSGFGTESIITT 444
P G+ ID+ D + T+ H + +
Sbjct: 86 --GKNLFYLPHGLSIDT-DGNYWVTDVALH--QVFKLDPHSKEGPLLILGRSMQPGSDQN 140
Query: 445 DITMPNALALDHQAEKLFWGDARL-DKIERCDYDGT 479
P +A++ +F D +I + G
Sbjct: 141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK 176
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 30.4 bits (68), Expect = 1.9
Identities = 19/128 (14%), Positives = 28/128 (21%), Gaps = 41/128 (32%)
Query: 546 CAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTIN------TVCSEHDFK 599
C D C L E C+ + C + C +
Sbjct: 244 CQFKGAETECRVAKDDCDLPEL----CTGQSA--------ECPTDSLQRNGHPCQNNQSY 291
Query: 600 CSDGMCIPFNQTC----------------------DRVYNCHDKSDEGILYCAMRDCRPG 637
C +G C C D C + + CA +D + G
Sbjct: 292 CYNGTCPTLTNQCITLLGPHFTVSPKGCFNLNMRGDDGSFCRMEDG-TKIPCAAKDVKCG 350
Query: 638 YFKCDNNK 645
C
Sbjct: 351 RLYCTEKN 358
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 30.4 bits (68), Expect = 2.0
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 23/110 (20%)
Query: 545 ACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTIN------TVCSEHDF 598
A+ CR +CD L E C+ + + C + C +
Sbjct: 269 KGARAECRAAKDDCD----LPEL----CTGQSAE--------CPTDVFQRNGLPCQNNQG 312
Query: 599 KCSDGMCIPFNQTCDRVYNCHDKSDEGILYCA-MRDCRPGYFKCDNNKCI 647
C +G C C + K + R G + + + I
Sbjct: 313 YCYNGKCPIMTNQCIALRGPGVKVSRDSCFTLNQRTRGCGLCRMEYGRKI 362
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 29.6 bits (66), Expect = 2.0
Identities = 19/105 (18%), Positives = 25/105 (23%), Gaps = 5/105 (4%)
Query: 546 CAKTPCRHLNGNC---DDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDF-KCS 601
C C G C + C G C + C N CS+ F
Sbjct: 55 CTNNQCCSQYGYCGFGAEYCGAGCQGGP-CRADIKCGSQAGGKLCPNNLCCSQWGFCGLG 113
Query: 602 DGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKC 646
C Q+ + D G C C + C
Sbjct: 114 SEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPG 158
Score = 28.1 bits (62), Expect = 6.7
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 572 CSCFTGKVLMEDNRSCTINTVCSEHDF-KCSDGMCIPFNQ--TCDRVYNCHDKSDEGILY 628
C +CT N CS++ + C Q C C ++ +
Sbjct: 40 CWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCP 99
Query: 629 CAMRDCRPGYFKCDNNKC 646
+ + G+ + C
Sbjct: 100 NNLCCSQWGFCGLGSEFC 117
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 30.1 bits (68), Expect = 2.1
Identities = 23/164 (14%), Positives = 55/164 (33%), Gaps = 13/164 (7%)
Query: 324 KRKTLFYSDIQKGTINSVFFNGSNHR-VLLERQGSVEGLAYEYVHNYLYWTCNNDATINK 382
++ LF D+ +G I + + + + + + L+ C +
Sbjct: 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH-KDGRLF-VCYLGDFKST 111
Query: 383 IDLDSPKAQRIVVVRLGQHDKP-RGI-DIDSCDS--RIYWT--NWNSHLP--SIQRAFFS 434
+ + + + + I D+ DS Y+T S P +
Sbjct: 112 GGIFAATENGDNLQDIIEDLSTAYCIDDM-VFDSKGGFYFTDFRGYSTNPLGGVYYVSPD 170
Query: 435 GFGTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYDG 478
T + I +I++ N +AL + L+ + +++ R +
Sbjct: 171 F-RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 30.1 bits (68), Expect = 2.1
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 15/90 (16%)
Query: 569 QVVCSCFTGKVLMEDNRS-------CTINTVCSEHDFKCSDGMC-IPFNQTCDRVYNCHD 620
C TG L++ + C + CS C P + RV +
Sbjct: 40 SFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRV--EYI 97
Query: 621 KSDEGILYCAMRDCRPGYFKCDNNKCILSS 650
Y A+ C+ +
Sbjct: 98 TGPGVTTYKAVIQYS-----CEETFYTMKV 122
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 29.2 bits (66), Expect = 2.1
Identities = 19/103 (18%), Positives = 25/103 (24%), Gaps = 40/103 (38%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSC---FTGKVLMEDNRSCTINTVCSEHDF 598
+ D C PC + G C D+ C C F G ++C E D
Sbjct: 47 DGDQCEPNPCLN-GGLC-----KDDINSYECWCQVGFEG-------KNC-------ELDA 86
Query: 599 KCSDGMCIPFNQTCDRV---YNCHDKSDEGILYCAMRDCRPGY 638
C+ C C GY
Sbjct: 87 TCNIKNGRCKQFCKTGADSKVLCS--------------CTTGY 115
Score = 28.5 bits (64), Expect = 3.6
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
+ K C CK +V+CSC TG L D +SC
Sbjct: 85 DATCNIKNGR------CKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 30.4 bits (68), Expect = 2.2
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 16/108 (14%)
Query: 547 AKTPCRHLNGNCD--DICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGM 604
A T CR CD D+C TG+ S + + C N C +G
Sbjct: 274 AGTECRAAKDECDMADVC----TGR---SAECTDRFQRNGQPCKNNN------GYCYNGK 320
Query: 605 CIPFNQTCDRVYNCHDKSDEGILYCA-MRDCRPGYFKCDNNKCILSSH 651
C C ++ + + GY + + N I
Sbjct: 321 CPIMADQCIALFGPGATVSQDACFQFNREGNHYGYCRKEQNTKIACEP 368
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 30.3 bits (67), Expect = 2.2
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 16/106 (15%)
Query: 541 DNLDACAKTPCRH--LNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDF 598
D+ C CR+ L+G C + C C + + C + H +
Sbjct: 220 DDPTKCVA--CRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQY 277
Query: 599 KCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNN 644
+ CIP C Y + + C P C
Sbjct: 278 VIHNNKCIP---ECPSGYTMNSSN---------LLCTPCLGPCPKV 311
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 2.4
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 16/53 (30%)
Query: 542 NLDA---CAKTP-CRHLNGNCDDICKLDETGQVVCS-CFTGKVLME---DNRS 586
NL+ C P C+ I + G VVC+ C G VL + D RS
Sbjct: 17 NLNIVLTC---PECKVYPPK---IVERFSEGDVVCALC--GLVLSDKLVDTRS 61
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 29.9 bits (67), Expect = 2.4
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 570 VVCS-CFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGILY 628
VC C +G + + C + C +G+C +++ NC
Sbjct: 143 YVCQYCPSGNFQGKTATPYKLGPPCGDCPSACDNGLCTNPCTIYNKLTNCDSL------- 195
Query: 629 CAMRDCRPGYFK 640
C+ + K
Sbjct: 196 LKQSSCQDDWIK 207
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 28.2 bits (62), Expect = 2.6
Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 9/49 (18%)
Query: 237 TNPCGVNNGGCAE--LCLY-----NGVSAVCACAHGVVAQ--DGKSCSE 276
C NNGGC C NG C C DG CS
Sbjct: 46 NPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSH 94
Score = 27.4 bits (60), Expect = 4.6
Identities = 15/95 (15%), Positives = 22/95 (23%), Gaps = 17/95 (17%)
Query: 544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDG 603
C K C N C + C C ++ C N +
Sbjct: 5 HQCVKKQC-PQNSGC----FRHLDEREECKCLLN--YKQEGDKCVENPNPT--------- 48
Query: 604 MCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGY 638
C N CD C ++ +C
Sbjct: 49 -CNENNGGCDADAKCTEEDSGSNGKKITCECTKPD 82
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 29.8 bits (67), Expect = 3.3
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 11/83 (13%)
Query: 555 NGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTINTVCSEHDFKCSDGMCIPFNQTCDR 614
+ C+ T V C FT C+E KC + N + +
Sbjct: 310 AAKSHEACQKLCTNAVRCQFFT---------YTPAQASCNEGKGKCYLKLSS--NGSPTK 358
Query: 615 VYNCHDKSDEGILYCAMRDCRPG 637
+ + L D
Sbjct: 359 ILHGRGGISGYTLRLCKMDNECT 381
Score = 28.7 bits (64), Expect = 7.4
Identities = 7/73 (9%), Positives = 8/73 (10%), Gaps = 15/73 (20%)
Query: 593 CSEHDFKCSDGMCIPFNQTCDRVYNCHDKSDEGI---------------LYCAMRDCRPG 637
C + A C G
Sbjct: 283 CRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEG 342
Query: 638 YFKCDNNKCILSS 650
KC S
Sbjct: 343 KGKCYLKLSSNGS 355
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 28.3 bits (64), Expect = 3.3
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 51/126 (40%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSC---FTGKVLMEDNRSCTINTVCSEHDF 598
+++ C PC++ + C LD+ G+ C C + G C +NT D
Sbjct: 44 DVNECVSNPCQN-DATC-----LDQIGEFQCICMPGYEGV-------HCEVNT-----DE 85
Query: 599 KCSDGMCIPFNQ-TC-DRV--YNCHDKSDEGILYCAMRDCRPGYF---------KCDNNK 645
C+ C + C D++ + C C G+ + +
Sbjct: 86 -CASSPC--LHNGRCLDKINEFQCE--------------CPTGFTGHLCQVDLHHILDAQ 128
Query: 646 CILSSH 651
++ +H
Sbjct: 129 KMVWNH 134
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 29.0 bits (65), Expect = 3.5
Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 39/103 (37%)
Query: 542 NLDACAKTPCRHLNGNCDDICKLDETGQVVCSC---FTGKVLMEDNRSCTINTVCSEHDF 598
+ D C +PC++ G C D G+ C+C F GK N +CS
Sbjct: 41 DGDQCETSPCQN-QGKC-----KDGLGEYTCTCLEGFEGK-----NCELFTRKLCS---- 85
Query: 599 KCSDGMCIPFNQTC-DRV--YNCHDKSDEGILYCAMRDCRPGY 638
+G C +Q C + C C GY
Sbjct: 86 -LDNGDC---DQFCHEEQNSVVCS--------------CARGY 110
Score = 28.2 bits (63), Expect = 6.6
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 16/85 (18%)
Query: 544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRS--------CTINTVCSE 595
C+ + C +E VVCSC G L ++ ++ C T+
Sbjct: 82 KLCSLDNGDC-DQFC-----HEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERR 135
Query: 596 H--DFKCSDGMCIPFNQTCDRVYNC 618
+ + + + Y+
Sbjct: 136 KRSVAQATSSSGEAPDSITWKPYDA 160
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
genomics, midwest center for structu genomics,
TOLB-like, Ca binding; 2.55A {Escherichia coli}
Length = 255
Score = 29.2 bits (65), Expect = 3.8
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 119 GQYRYVL----ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 164
Y + I+G + S+L +S L +S K I +G
Sbjct: 11 QNYHATIDGKEIAGITNNISSLTWSAQSNTL-FSTINKPAAIVEMTTNGD 59
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 29.4 bits (66), Expect = 4.0
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 569 QVVCSCFTGKVLMEDNRSC-TINTVCSEH-DFKCSDGMCIPFNQTCDRVYNCHDKSDE 624
+ +C G L+E N+ + VC + + + C + C + N +
Sbjct: 27 YFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKI--KDCGQPRNLPNGDFR 82
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 29.4 bits (65), Expect = 4.1
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 549 TPCRHLNGNCDDICKLDET------GQVVCSCFTGKVLMEDNRSCT-INTVCSEHDFKCS 601
+ C+ L+ C + + + + C +G + N CT C +
Sbjct: 257 SFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLE 316
Query: 602 DGMCIPFNQTCDRVYNC 618
I + + C
Sbjct: 317 GEKTIDSVTSAQELRGC 333
Score = 29.4 bits (65), Expect = 4.2
Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 12/103 (11%)
Query: 550 PCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNR---SCTINTVCSEHDFKCSDGMCI 606
+ C C C + D R +C + + C
Sbjct: 204 EGLCCHSECLGNCS---QPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQ 260
Query: 607 PFNQTCDRVYNCHDKSDEGILY---CAMRDCRPGYFKCDNNKC 646
+ C + + +++ C + +C GY +N
Sbjct: 261 DLHHKCK--NSRRQGCHQYVIHNNKC-IPECPSGYTMNSSNLL 300
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 29.6 bits (65), Expect = 4.2
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 583 DNRSCTINTVCSEHDFKCS-DGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCRPGYFKC 641
+ +C C + DF+C G C+ + C+ +C D SDE D R C
Sbjct: 56 SSTTCVRQAQCGQ-DFQCKETGRCLKRHLVCNGDQDCLDGSDE----DDCEDVRAIDEDC 110
Query: 642 DNNKCILSSHT 652
+ I S
Sbjct: 111 SQYEPIPGSQK 121
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 29.1 bits (64), Expect = 5.5
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 8/71 (11%)
Query: 547 AKTPCRHLNGNCDDICKLDETGQVVCS-CFTGKVLMEDNRSCTIN------TVCSEHDFK 599
A CR G C +C ++ + + T C +
Sbjct: 23 ANEQCRVAFGPKAVACTFAREHLDMCQALSCHTDPLDQSSCSRLLVPLLDGTECGVEKW- 81
Query: 600 CSDGMCIPFNQ 610
CS G C +
Sbjct: 82 CSKGRCRSLVE 92
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis,
staphyloxanthin biosynthesis, transferase, head-TO-head
condensation, inhibitor; HET: 673; 1.31A {Staphylococcus
aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A*
3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A*
4e9u_A* ...
Length = 293
Score = 28.8 bits (65), Expect = 6.0
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 468 LDKIERCDYDGTNRIVLSK 486
LD++ + +Y R+ + K
Sbjct: 258 LDEVRQANYTLHERVFVEK 276
>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A
{Bos taurus}
Length = 192
Score = 28.1 bits (62), Expect = 6.4
Identities = 18/110 (16%), Positives = 27/110 (24%), Gaps = 12/110 (10%)
Query: 543 LDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTI---NTVCSEHDFK 599
D C C N CKL CS G C C +
Sbjct: 22 SDQCKDECCYDANQPEGKKCKL--KPGKQCSPSQGPC---CTAHCAFKSKTEKCRDDS-D 75
Query: 600 CS-DGMCIPFNQTCDRVYNCHDKS--DEGILYCAMRDCRPGYFKCDNNKC 646
C+ +G+C C + + + C C + +
Sbjct: 76 CAKEGICNGITALCPASDPKPNFTDCNRHTQVCINGQCAGSICEKHGLEE 125
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 28.9 bits (64), Expect = 6.7
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Query: 539 ISDNLDACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSCTIN-TVCSEHD 597
I ++ + L+ + + C +E + SC K+ + S C +
Sbjct: 351 IRSKVELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEK 410
Query: 598 FKCSDGMCIPFNQT--CDRVYNCHDKSDEGILYCAMRDCRPGYFKCDNNKC 646
K + F + ++C D + + C G + C
Sbjct: 411 EKSFTIKPVGFKDSLIVQVTFDC-DCACQAQAEPNSHRCNNGNGTFECGVC 460
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 28.4 bits (64), Expect = 7.7
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 437 GTESIITTDITMPNALALDHQAEKLFWGDARLDKIERCDYD 477
G + + DI++PN++ ++ D +++++ R D
Sbjct: 169 GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 28.3 bits (62), Expect = 8.5
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 581 MEDNRSCTINTVCSEHD-----FKCSDGMCIPFNQTCDRVYNCHDKSDEGILYCAMRDCR 635
++ C N C G C+ C+ +C D+SDE + C+
Sbjct: 50 DKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQ 109
Query: 636 PGYFKCDNNKCI 647
+ +
Sbjct: 110 HEMDQYWGIGSL 121
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 26.1 bits (58), Expect = 9.9
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 544 DACAKTPCRHLNGNCDDICKLDETGQVVCSCFTGKVLMEDNRSC 587
D C + P G C + G C C G L + +C
Sbjct: 47 DECQRDPLLCRGGVCHNT-----EGSYRCECPPGHQLSPNISAC 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.420
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,075,514
Number of extensions: 621679
Number of successful extensions: 2224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1653
Number of HSP's successfully gapped: 310
Length of query: 652
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 552
Effective length of database: 3,909,693
Effective search space: 2158150536
Effective search space used: 2158150536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)