BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5769
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YQ3|B Chain B, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|B Chain B, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|B Chain B, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|O Chain O, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|B Chain B, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|O Chain O, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|B Chain B, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|B Chain B, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|O Chain O, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 252
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/255 (56%), Positives = 177/255 (69%), Gaps = 58/255 (22%)
Query: 105 QLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN--------------N 150
Q +AAA+S + K F+IYRW+PDKP +KP MQ Y+VDLN N
Sbjct: 2 QTAAAATSRI--------KKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKN 53
Query: 151 KIDAN-----------------------------------DKVSKIYPLPHMYVVKDLVP 175
++D+ K +KIYPLPHMYVVKDLVP
Sbjct: 54 ELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVP 113
Query: 176 DMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWW 234
D++NFYAQYKSI+P+L++ D+ G QYLQS++DR+KLDGLYECILCACCSTSCPSYWW
Sbjct: 114 DLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWW 173
Query: 235 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGR 294
NG+KYLGPAVLMQAYRW+IDSRD+ T +RL QL+DPFS+YRCHTIMNCTRTCPKGLNPG+
Sbjct: 174 NGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGK 233
Query: 295 AIAEIKKLLSGLVKK 309
AIAEIKK+++ +K
Sbjct: 234 AIAEIKKMMATYKEK 248
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 77/87 (88%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC KID + K +KIYPL
Sbjct: 43 MVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPL 102
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYVVKDLVPD++NFYAQYKSI+ +L
Sbjct: 103 PHMYVVKDLVPDLSNFYAQYKSIEPYL 129
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Query: 313 GLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G A KID + K +KIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L +
Sbjct: 80 GNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKK 131
>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 252
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 141/248 (56%), Positives = 172/248 (69%), Gaps = 50/248 (20%)
Query: 112 SAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN--------------------- 150
+ A + K FAIYRW+PDK +KP MQ Y++DLNN
Sbjct: 1 AQTAAATAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLT 60
Query: 151 ---------------------------KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYA 182
+ID N DKVSKIYPLPHMYV+KDLVPD++NFYA
Sbjct: 61 FRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYA 120
Query: 183 QYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLG 241
QYKSI+P+L++ D+ G QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLG
Sbjct: 121 QYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLG 180
Query: 242 PAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKK 301
PAVLMQAYRW+IDSRD+ T +RL +L+DPFS+YRCHTIMNCT TCPKGLNPG+AIAEIKK
Sbjct: 181 PAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKK 240
Query: 302 LLSGLVKK 309
+++ +K
Sbjct: 241 MMATYKEK 248
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/87 (82%), Positives = 79/87 (90%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC +ID N DKVSKIYPL
Sbjct: 43 MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKIYPL 102
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYV+KDLVPD++NFYAQYKSI+ +L
Sbjct: 103 PHMYVIKDLVPDLSNFYAQYKSIEPYL 129
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Query: 313 GLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G A +ID N DKVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L +
Sbjct: 80 GNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 131
>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3SFD|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 252
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 141/248 (56%), Positives = 172/248 (69%), Gaps = 50/248 (20%)
Query: 112 SAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN--------------------- 150
+ A + K FAIYRW+PDK +KP MQ Y++DLNN
Sbjct: 1 AQTAAATAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLT 60
Query: 151 ---------------------------KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYA 182
+ID N DKVSKIYPLPHMYV+KDLVPD++NFYA
Sbjct: 61 FRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYA 120
Query: 183 QYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLG 241
QYKSI+P+L++ D+ G QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLG
Sbjct: 121 QYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLG 180
Query: 242 PAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKK 301
PAVLMQAYRW+IDSRD+ T +RL +L+DPFS+YRCHTIMNCT TCPKGLNPG+AIAEIKK
Sbjct: 181 PAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKK 240
Query: 302 LLSGLVKK 309
+++ +K
Sbjct: 241 MMATYKEK 248
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/87 (82%), Positives = 79/87 (90%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC +ID N DKVSKIYPL
Sbjct: 43 MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKIYPL 102
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYV+KDLVPD++NFYAQYKSI+ +L
Sbjct: 103 PHMYVIKDLVPDLSNFYAQYKSIEPYL 129
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 232 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291
Y W+ +K G MQ Y +++ D L ++K+ + + R+C +G+
Sbjct: 17 YRWDPDK-TGDKPHMQTYEIDLNNCGPMVLDALIKIKNEID-----STLTFRRSCREGIC 70
Query: 292 PGRAIAEIKKLLSGLVKKDKPGLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNF 350
A+ ++G G A +ID N DKVSKIYPLPHMYV+KDLVPD++NF
Sbjct: 71 GSCAMN-----ING-------GNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNF 118
Query: 351 YAQYKSIQPWLPR 363
YAQYKSI+P+L +
Sbjct: 119 YAQYKSIEPYLKK 131
>pdb|3VR8|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 282
Score = 257 bits (657), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 157/242 (64%), Gaps = 50/242 (20%)
Query: 121 KYKTFAIYRWNPDKPDEKPTMQEYKVDLN--------------NKIDAN----------- 155
+ KTF IYR+NP++P KP +Q++ VDL+ N++D
Sbjct: 34 RIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGI 93
Query: 156 ------------------------DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 191
K +KIYPLPHM+V+KDLVPDMN FYAQY SIQPWL
Sbjct: 94 CGSCAMNIAGENTLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWL 153
Query: 192 QR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 250
Q+ K N+G Q QS+ +++KLDGLYECILCACCS SCPSYWWN +KYLGPAVLMQAYR
Sbjct: 154 QKKTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYR 213
Query: 251 WIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVKKD 310
WIIDSRD+ A+RL +++D FS ++CHTIMNCT+TCPK LNP RAI EIK LL+ + K
Sbjct: 214 WIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLLTKMKTKP 273
Query: 311 KP 312
P
Sbjct: 274 AP 275
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 76/91 (83%), Gaps = 6/91 (6%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNI G NTLACI ID N K +KIYPL
Sbjct: 67 MVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLACICNIDQNTSKTTKIYPL 126
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
PHM+V+KDLVPDMN FYAQY SIQ PW
Sbjct: 127 PHMFVIKDLVPDMNLFYAQYASIQ-----PW 152
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 317 AALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
A + ID N K +KIYPLPHM+V+KDLVPDMN FYAQY SIQPWL +
Sbjct: 108 ACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQK 155
>pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WS3|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 238
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 136/230 (59%), Gaps = 52/230 (22%)
Query: 125 FAIYRWNPDKPDEKPTMQEYKVD------------------------------------- 147
F+IYR+NPD D+ P MQ+Y ++
Sbjct: 5 FSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSD 63
Query: 148 ---LNNK--------IDANDKVSK---IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR 193
+N K I A ++ K I PLP + V++DLV DM FYAQY+ I+P+L
Sbjct: 64 GLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLN 123
Query: 194 DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWII 253
+ +N ++LQ + R+KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++I
Sbjct: 124 NGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLI 183
Query: 254 DSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLL 303
DSRD +T RL+ L D FSV+RCH+IMNC CPKGLNP RAI IK +L
Sbjct: 184 DSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSML 233
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 4/89 (4%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSK---IY 57
M+LDALI++K E DP+L+FRRSCREG+CGS +N+ G N LACI+ I A ++ K I
Sbjct: 34 MLLDALIQLK-EKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIR 92
Query: 58 PLPHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PLP + V++DLV DM FYAQY+ I+ +L
Sbjct: 93 PLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 26/122 (21%)
Query: 246 MQAYRWIID-SRDEKTADRLNQLK--DPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKL 302
MQ Y D RD D L QLK DP +R R+C +G+
Sbjct: 20 MQDYTLEADEGRDMMLLDALIQLKEKDPSLSFR--------RSCREGVCGS--------- 62
Query: 303 LSGLVKKDKPGLDTAALHKIDANDKVSK---IYPLPHMYVVKDLVPDMNNFYAQYKSIQP 359
GL K GL A + I A ++ K I PLP + V++DLV DM FYAQY+ I+P
Sbjct: 63 -DGLNMNGKNGL--ACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKP 119
Query: 360 WL 361
+L
Sbjct: 120 YL 121
>pdb|2WP9|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
Length = 238
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 135/230 (58%), Gaps = 52/230 (22%)
Query: 125 FAIYRWNPDKPDEKPTMQEYKVD------------------------------------- 147
F+IYR+NPD D+ P MQ+Y ++
Sbjct: 5 FSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSD 63
Query: 148 ---LNNK--------IDANDKVSK---IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR 193
+N K I A ++ K I PLP + V++DLV DM FYAQY+ I+P+L
Sbjct: 64 GLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLN 123
Query: 194 DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWII 253
+ +N ++LQ + R+KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++I
Sbjct: 124 NGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLI 183
Query: 254 DSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLL 303
DSRD +T RL+ L D FSV+RC +IMNC CPKGLNP RAI IK +L
Sbjct: 184 DSRDTETDSRLDGLSDAFSVFRCTSIMNCVSVCPKGLNPTRAIGHIKSML 233
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 4/89 (4%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSK---IY 57
M+LDALI++K E DP+L+FRRSCREG+CGS +N+ G N LACI+ I A ++ K I
Sbjct: 34 MLLDALIQLK-EKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIR 92
Query: 58 PLPHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PLP + V++DLV DM FYAQY+ I+ +L
Sbjct: 93 PLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 26/122 (21%)
Query: 246 MQAYRWIID-SRDEKTADRLNQLK--DPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKL 302
MQ Y D RD D L QLK DP +R R+C +G+
Sbjct: 20 MQDYTLEADEGRDMMLLDALIQLKEKDPSLSFR--------RSCREGVCGS--------- 62
Query: 303 LSGLVKKDKPGLDTAALHKIDANDKVSK---IYPLPHMYVVKDLVPDMNNFYAQYKSIQP 359
GL K GL A + I A ++ K I PLP + V++DLV DM FYAQY+ I+P
Sbjct: 63 -DGLNMNGKNGL--ACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKP 119
Query: 360 WL 361
+L
Sbjct: 120 YL 121
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|B Chain B, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|N Chain N, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|2B76|B Chain B, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|N Chain N, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|3CIR|B Chain B, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|N Chain N, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3P4R|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|B Chain B, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|N Chain N, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 243
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 219
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 89 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 148
Query: 220 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI 279
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+ C +
Sbjct: 149 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFV 207
Query: 280 MNCTRTCPKGLNPGRAIAEIK 300
C+ CPK ++P AI + K
Sbjct: 208 GYCSEVCPKHVDPAAAIQQGK 228
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPH 61
+LDAL IK+ + P L++R SCR ICGSC M + V LAC + + K+ L +
Sbjct: 36 LLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALAN 95
Query: 62 MYVVKDLVPDMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAK 121
+ +DLV DM +F ++I+ P+ I + TA + Q PA+ AK
Sbjct: 96 FPIERDLVVDMTHFIESLEAIK-----PYIIGNSRTADQGTNIQ--------TPAQM-AK 141
Query: 122 YKTFA 126
Y F+
Sbjct: 142 YHQFS 146
>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 241
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 153 DANDKVSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWLQRDKE-NIGNAQYLQSLDDR 210
D D V + PLP ++KDL D N F + ++ W+ KE +I + +
Sbjct: 83 DFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVA 142
Query: 211 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT-ADRLNQLKD 269
+++ L CI C CC +C + E ++G A L + R++ID DE+T D + D
Sbjct: 143 QEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGD 201
Query: 270 PFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKK 301
V+ C T++ C CPK L IA +++
Sbjct: 202 DDGVFGCMTLLACHDVCPKNLPLQSKIAYLRR 233
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 9 IKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKI-DANDKVSKIYPLPHMYVVKD 67
I+ DP L F CR GICGSC M I G +LAC + D D V + PLP ++KD
Sbjct: 43 IRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKD 102
Query: 68 LVPDMNNFY 76
L D N++
Sbjct: 103 LSVDTGNWF 111
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 305 GLVKKDKPGLDTAALHKIDANDKVSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWL 361
G++ +P L L K D D V + PLP ++KDL D N F + ++ W+
Sbjct: 66 GMMINGRPSLACRTLTK-DFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWI 122
>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
Length = 239
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 153 DANDKVSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWLQRDKE-NIGNAQYLQSLDDR 210
D D V + PLP ++KDL D N F + ++ W+ KE +I + +
Sbjct: 83 DFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVA 142
Query: 211 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT-ADRLNQLKD 269
+++ L CI C CC +C + E ++G A L + R++ID DE+T D + D
Sbjct: 143 QEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGD 201
Query: 270 PFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKK 301
V+ C T++ C CPK L IA +++
Sbjct: 202 DDGVFGCMTLLACHDVCPKNLPLQSKIAYLRR 233
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 9 IKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKI-DANDKVSKIYPLPHMYVVKD 67
I+ DP L F CR GICGSC M I G +LAC + D D V + PLP ++KD
Sbjct: 43 IRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKD 102
Query: 68 LVPDMNNFY 76
L D N++
Sbjct: 103 LSVDTGNWF 111
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 305 GLVKKDKPGLDTAALHKIDANDKVSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWL 361
G++ +P L L K D D V + PLP ++KDL D N F + ++ W+
Sbjct: 66 GMMINGRPSLACRTLTK-DFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWI 122
>pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases.
pdb|1XEX|A Chain A, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 182
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 92 ILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK 134
+LG L+AK +R+ ++S + E PAKY AIY N D+
Sbjct: 49 VLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDR 91
>pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|C Chain C, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 182
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 92 ILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK 134
+LG L+AK R+ ++S + E PAKY AIY N D+
Sbjct: 49 VLGGLSAKAXRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDR 91
>pdb|2PAM|A Chain A, Structure Of A H49n, H51n Double Mutant
Dtdp-4-Keto-6-Deoxy- D-Glucose-3,4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus Complexed With Tdp
pdb|2PAM|B Chain B, Structure Of A H49n, H51n Double Mutant
Dtdp-4-Keto-6-Deoxy- D-Glucose-3,4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus Complexed With Tdp
Length = 141
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 249 YRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSG 305
++ IIDSR A N+ PFS+ R + I + P+G N + + ++ L+G
Sbjct: 10 FKKIIDSRGSLVAIEENK-NIPFSIKRVYYIFDTKGEEPRGFNANKKLEQVLVCLNG 65
>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
pdb|4I99|B Chain B, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
Length = 354
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 92 ILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK 134
+LG L+AK R+ ++S + E PAKY AIY N D+
Sbjct: 49 VLGGLSAKAXRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDR 91
>pdb|2PAE|A Chain A, Structure Of A H49n Mutant
Dtdp-4-Keto-6-Deoxy-D-Glucose-3, 4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus In Complex With Tdp
pdb|2PAE|B Chain B, Structure Of A H49n Mutant
Dtdp-4-Keto-6-Deoxy-D-Glucose-3, 4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus In Complex With Tdp
Length = 141
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 249 YRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSG 305
++ IIDSR A N+ PFS+ R + I + P+G N + + ++ L+G
Sbjct: 10 FKKIIDSRGSLVAIEENK-NIPFSIKRVYYIFDTKGEEPRGFNAHKKLEQVLVCLNG 65
>pdb|2WQD|A Chain A, Crystal Structure Of Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System In
The Dephosphorylated State
Length = 572
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 25 EGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQR 84
+G+ A NIG N L + I+ + +Y +Y+ +D +P + YK +
Sbjct: 267 DGVHAELAANIGTPNDLPGV--IENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLE 324
Query: 85 HLGGPWKILGTL 96
+GG ++ TL
Sbjct: 325 AMGGKRVVVRTL 336
>pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|8 Chain 8, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|9 Chain 9, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|O Chain O, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 182
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 214 DGLYECILCACCSTSCPSY 232
+GL +CI C+ C+ +CP+Y
Sbjct: 48 NGLEKCIGCSLCAAACPAY 66
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 4 DALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACI---SKIDANDKVSK----- 55
D L+ + + + C +G CG+C + + G ACI S++ N V+
Sbjct: 21 DLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIG 80
Query: 56 ----IYPLPHMYV 64
++PL H ++
Sbjct: 81 APDCLHPLQHAWI 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,226,844
Number of Sequences: 62578
Number of extensions: 466443
Number of successful extensions: 1226
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 68
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)