BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5769
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21914|DHSB_DROME Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Drosophila melanogaster GN=SdhB PE=2
SV=2
Length = 297
Score = 322 bits (825), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 169/289 (58%), Positives = 189/289 (65%), Gaps = 64/289 (22%)
Query: 93 LGTLTAKNIRSFQLSAAASSAVPAEKPAK--------YKTFAIYRWNPDKPDEKPTMQEY 144
+G+L A+N Q+ A ++ E+ A+ K F IYRWNPD EKP MQ Y
Sbjct: 13 VGSLVARN----QMRAISNGTAQLEQQAQPKEAQEPQIKKFEIYRWNPDNAGEKPYMQTY 68
Query: 145 KVDLN------------------------------------------------NKIDAND 156
+VDL +KID N
Sbjct: 69 EVDLRECGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGTNTLACISKIDINT 128
Query: 157 KVS-KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE---NIGNAQYLQSLDDRKK 212
S K+YPLPHMYVV+DLVPDMNNFY QY++IQPWLQR E G AQYLQS++DR K
Sbjct: 129 SKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSK 188
Query: 213 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFS 272
LDGLYECILCACCSTSCPSYWWN EKYLGPAVLMQAYRWIIDSRDE +A+RLN+LKDPFS
Sbjct: 189 LDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFS 248
Query: 273 VYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVKKDKPGLDTAALHK 321
VYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGL K P L+TAALHK
Sbjct: 249 VYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLASKPAPKLETAALHK 297
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 79/91 (86%), Gaps = 6/91 (6%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVS-KIYPL 59
MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGG NTLACISKID N S K+YPL
Sbjct: 78 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPL 137
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
PHMYVV+DLVPDMNNFY QY++IQ PW
Sbjct: 138 PHMYVVRDLVPDMNNFYEQYRNIQ-----PW 163
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 27/137 (19%)
Query: 232 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK---DPFSVYRCHTIMNCTRTCPK 288
Y WN + G MQ Y + D L ++K DP +R R+C +
Sbjct: 52 YRWNPDN-AGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFR--------RSCRE 102
Query: 289 GLNPGRAIAEIKKLLSGLVKKDKPGLDT-AALHKIDANDKVS-KIYPLPHMYVVKDLVPD 346
G+ G + G +T A + KID N S K+YPLPHMYVV+DLVPD
Sbjct: 103 GI-------------CGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPD 149
Query: 347 MNNFYAQYKSIQPWLPR 363
MNNFY QY++IQPWL R
Sbjct: 150 MNNFYEQYRNIQPWLQR 166
>sp|P21913|DHSB_RAT Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Rattus norvegicus GN=Sdhb PE=2 SV=2
Length = 282
Score = 292 bits (747), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 147/260 (56%), Positives = 176/260 (67%), Gaps = 50/260 (19%)
Query: 95 TLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN----- 149
+ TA Q A + A + KTFAIYRW+PDK +KP MQ YKVDLN
Sbjct: 14 SATALGRVGLQFQACREAQTAAAAAPRIKTFAIYRWDPDKAGDKPRMQTYKVDLNKCGPM 73
Query: 150 ---------NKIDAN-----------------------------------DKVSKIYPLP 165
N+ID+ KVSKIYPLP
Sbjct: 74 VLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLGKVSKIYPLP 133
Query: 166 HMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYECILCAC 224
HMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++DR+KLDGLYECILCAC
Sbjct: 134 HMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGLYECILCAC 193
Query: 225 CSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTR 284
CSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRDE T +RL +L+DPFS+YRCHTIMNCT+
Sbjct: 194 CSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDEFTEERLAKLQDPFSLYRCHTIMNCTQ 253
Query: 285 TCPKGLNPGRAIAEIKKLLS 304
TCPKGLNPG+AIAEIKK+++
Sbjct: 254 TCPKGLNPGKAIAEIKKMMA 273
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 78/87 (89%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC +ID + KVSKIYPL
Sbjct: 73 MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLGKVSKIYPL 132
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYV+KDLVPD++NFYAQYKSI+ +L
Sbjct: 133 PHMYVIKDLVPDLSNFYAQYKSIEPYL 159
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 313 GLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G A +ID + KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L +
Sbjct: 110 GNTLACTRRIDTDLGKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 161
>sp|Q9YHT2|DHSB_CHICK Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1
Length = 290
Score = 291 bits (745), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 145/253 (57%), Positives = 176/253 (69%), Gaps = 58/253 (22%)
Query: 102 RSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN------------ 149
R Q +AAA+S + K F+IYRW+PDKP +KP MQ Y+VDLN
Sbjct: 37 RGAQTAAAATSRI--------KKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIK 88
Query: 150 --NKIDAN-----------------------------------DKVSKIYPLPHMYVVKD 172
N++D+ K +KIYPLPHMYVVKD
Sbjct: 89 IKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKD 148
Query: 173 LVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPS 231
LVPD++NFYAQYKSI+P+L++ D+ G QYLQS++DR+KLDGLYECILCACCSTSCPS
Sbjct: 149 LVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPS 208
Query: 232 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291
YWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL QL+DPFS+YRCHTIMNCTRTCPKGLN
Sbjct: 209 YWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLN 268
Query: 292 PGRAIAEIKKLLS 304
PG+AIAEIKK+++
Sbjct: 269 PGKAIAEIKKMMA 281
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 77/87 (88%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC KID + K +KIYPL
Sbjct: 81 MVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPL 140
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYVVKDLVPD++NFYAQYKSI+ +L
Sbjct: 141 PHMYVVKDLVPDLSNFYAQYKSIEPYL 167
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Query: 313 GLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G A KID + K +KIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L +
Sbjct: 118 GNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKK 169
>sp|P21912|DHSB_HUMAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Homo sapiens GN=SDHB PE=1 SV=3
Length = 280
Score = 290 bits (743), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/279 (53%), Positives = 185/279 (66%), Gaps = 60/279 (21%)
Query: 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPT 140
S++R L P LG + R Q +AA + + K FAIYRW+PDK +KP
Sbjct: 8 SLRRRL--PATTLGGACLQASRGAQTAAATAPRI--------KKFAIYRWDPDKAGDKPH 57
Query: 141 MQEYKVDLN------------------------------------------------NKI 152
MQ Y+VDLN +I
Sbjct: 58 MQTYEVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRI 117
Query: 153 DAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDR 210
D N +KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS+++R
Sbjct: 118 DTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEER 177
Query: 211 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDP 270
+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+DP
Sbjct: 178 EKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDP 237
Query: 271 FSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVKK 309
FS+YRCHTIMNCTRTCPKGLNPG+AIAEIKK+++ +K
Sbjct: 238 FSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKEK 276
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/87 (81%), Positives = 79/87 (90%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC +ID N +KVSKIYPL
Sbjct: 71 MVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPL 130
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYV+KDLVPD++NFYAQYKSI+ +L
Sbjct: 131 PHMYVIKDLVPDLSNFYAQYKSIEPYL 157
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Query: 313 GLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G A +ID N +KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L +
Sbjct: 108 GNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 159
>sp|Q9CQA3|DHSB_MOUSE Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Mus musculus GN=Sdhb PE=1 SV=1
Length = 282
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/268 (54%), Positives = 178/268 (66%), Gaps = 56/268 (20%)
Query: 87 GGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKV 146
G P +LG + Q A + A + K FAIYRW+PDK +KP MQ Y+V
Sbjct: 12 GFPAAVLGRV------GLQFQACRGAQTAAAAAPRIKKFAIYRWDPDKTGDKPRMQTYEV 65
Query: 147 DLN--------------NKIDAN-----------------------------------DK 157
DLN N++D+ K
Sbjct: 66 DLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLSK 125
Query: 158 VSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGL 216
VSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++DR+KLDGL
Sbjct: 126 VSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGL 185
Query: 217 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRC 276
YECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+DPFSVYRC
Sbjct: 186 YECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSVYRC 245
Query: 277 HTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
HTIMNCT+TCPKGLNPG+AIAEIKK+++
Sbjct: 246 HTIMNCTQTCPKGLNPGKAIAEIKKMMA 273
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 78/87 (89%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC +ID + KVSKIYPL
Sbjct: 73 MVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLSKVSKIYPL 132
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYV+KDLVPD++NFYAQYKSI+ +L
Sbjct: 133 PHMYVIKDLVPDLSNFYAQYKSIEPYL 159
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 313 GLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G A +ID + KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L +
Sbjct: 110 GNTLACTRRIDTDLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 161
>sp|Q007T0|DHSB_PIG Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Sus scrofa GN=SDHB PE=1 SV=1
Length = 280
Score = 288 bits (737), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/271 (54%), Positives = 180/271 (66%), Gaps = 58/271 (21%)
Query: 89 PWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDL 148
P LG + R Q +AA + + K FAIYRW+PDK +KP MQ Y++DL
Sbjct: 14 PATTLGGACLQACRGAQTAAATAPRI--------KKFAIYRWDPDKTGDKPHMQTYEIDL 65
Query: 149 NN------------------------------------------------KIDAN-DKVS 159
NN +ID N DKVS
Sbjct: 66 NNCGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVS 125
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYE 218
KIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS+++R+KLDGLYE
Sbjct: 126 KIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYE 185
Query: 219 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHT 278
CILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+DPFS+YRCHT
Sbjct: 186 CILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHT 245
Query: 279 IMNCTRTCPKGLNPGRAIAEIKKLLSGLVKK 309
IMNCT TCPKGLNPG+AIAEIKK+++ +K
Sbjct: 246 IMNCTGTCPKGLNPGKAIAEIKKMMATYKEK 276
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/87 (82%), Positives = 79/87 (90%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC +ID N DKVSKIYPL
Sbjct: 71 MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKIYPL 130
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYV+KDLVPD++NFYAQYKSI+ +L
Sbjct: 131 PHMYVIKDLVPDLSNFYAQYKSIEPYL 157
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Query: 313 GLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G A +ID N DKVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L +
Sbjct: 108 GNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 159
>sp|Q3B8J8|DHSB_XENLA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Xenopus laevis GN=sdhb PE=2 SV=1
Length = 282
Score = 288 bits (737), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 142/234 (60%), Positives = 167/234 (71%), Gaps = 50/234 (21%)
Query: 121 KYKTFAIYRWNPDKPDEKPTMQEYKVDLNN------------------------------ 150
+ K FAIYRW+PDKP +KP MQ Y+VDLN
Sbjct: 40 RIKKFAIYRWDPDKPGDKPRMQTYEVDLNTCGPMVLDALIKIKNEVDPTLTFRRSCREGI 99
Query: 151 ------------------KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 191
+ID N KVSKIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L
Sbjct: 100 CGSCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYL 159
Query: 192 QR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 250
++ DK G QYLQS++DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYR
Sbjct: 160 KKKDKSQQGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYR 219
Query: 251 WIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
W+IDSRD+ T +RL++L+DPFS+YRCHTIMNCTRTCPKGLNPG+AIAEIKK+++
Sbjct: 220 WMIDSRDDFTEERLSKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 273
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 114/175 (65%), Gaps = 25/175 (14%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNI G NTLAC +ID N KVSKIYPL
Sbjct: 73 MVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNINGGNTLACTVRIDTNLSKVSKIYPL 132
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL-------GGPWKILGTLTAKN----IRSFQLSA 108
PHMYVVKDLVPD++NFYAQYKSI+ +L G + L ++ ++ + L A
Sbjct: 133 PHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDKSQQGKEQYLQSIEDRDKLDGLYECILCA 192
Query: 109 AASSAVPAEKPAKYKTFAIYRWNPDK-PDEKPTMQEYKVDLNNKID-ANDKVSKI 161
S++ P+ Y WN DK MQ Y+ ++++ D +++SK+
Sbjct: 193 CCSTSCPS-----------YWWNADKYLGPAVLMQAYRWMIDSRDDFTEERLSKL 236
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 68/136 (50%), Gaps = 25/136 (18%)
Query: 232 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK---DPFSVYRCHTIMNCTRTCPK 288
Y W+ +K G MQ Y +++ D L ++K DP +R +C
Sbjct: 47 YRWDPDK-PGDKPRMQTYEVDLNTCGPMVLDALIKIKNEVDPTLTFRRSCREGICGSCAM 105
Query: 289 GLNPGRAIAEIKKLLSGLVKKDKPGLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDM 347
+N G +A +ID N KVSKIYPLPHMYVVKDLVPD+
Sbjct: 106 NINGGNTLA--------------------CTVRIDTNLSKVSKIYPLPHMYVVKDLVPDL 145
Query: 348 NNFYAQYKSIQPWLPR 363
+NFYAQYKSI+P+L +
Sbjct: 146 SNFYAQYKSIEPYLKK 161
>sp|A5PL98|DHSB_DANRE Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Danio rerio GN=sdhb PE=2 SV=1
Length = 280
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/240 (59%), Positives = 168/240 (70%), Gaps = 50/240 (20%)
Query: 121 KYKTFAIYRWNPDKPDEKPTMQEYKVDLN------------------------------- 149
+ K F IYRW+PD +KP MQ Y++DLN
Sbjct: 37 RIKKFQIYRWDPDTVGDKPRMQTYEIDLNTCGPMVLDALIKIKNEMDSTLTFRRSCREGI 96
Query: 150 -----------------NKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 191
NKID N KV+KIYPLPHMYVVKDLVPDM+NFYAQYKSI+P+L
Sbjct: 97 CGSCAMNINGGNTLACLNKIDTNTSKVTKIYPLPHMYVVKDLVPDMSNFYAQYKSIEPYL 156
Query: 192 QR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 250
++ D+ G QYLQS++DR+KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYR
Sbjct: 157 KKKDESQQGKQQYLQSVEDRQKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYR 216
Query: 251 WIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVKKD 310
W+IDSRD+ T DRL++L+DPFS+YRCHTIMNCTRTCPKGLNPG+AIAEIKK++ +KD
Sbjct: 217 WMIDSRDDFTEDRLSKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMVTYKQKD 276
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 114/175 (65%), Gaps = 25/175 (14%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNEMD TLTFRRSCREGICGSCAMNI G NTLAC++KID N KV+KIYPL
Sbjct: 70 MVLDALIKIKNEMDSTLTFRRSCREGICGSCAMNINGGNTLACLNKIDTNTSKVTKIYPL 129
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL-------GGPWKILGTLTAK----NIRSFQLSA 108
PHMYVVKDLVPDM+NFYAQYKSI+ +L G + L ++ + + L A
Sbjct: 130 PHMYVVKDLVPDMSNFYAQYKSIEPYLKKKDESQQGKQQYLQSVEDRQKLDGLYECILCA 189
Query: 109 AASSAVPAEKPAKYKTFAIYRWNPDK-PDEKPTMQEYKVDLNNKID-ANDKVSKI 161
S++ P+ Y WN DK MQ Y+ ++++ D D++SK+
Sbjct: 190 CCSTSCPS-----------YWWNADKYLGPAVLMQAYRWMIDSRDDFTEDRLSKL 233
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 44/52 (84%), Gaps = 1/52 (1%)
Query: 313 GLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G A L+KID N KV+KIYPLPHMYVVKDLVPDM+NFYAQYKSI+P+L +
Sbjct: 107 GNTLACLNKIDTNTSKVTKIYPLPHMYVVKDLVPDMSNFYAQYKSIEPYLKK 158
>sp|Q3T189|DHSB_BOVIN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Bos taurus GN=SDHB PE=2 SV=1
Length = 280
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/262 (54%), Positives = 177/262 (67%), Gaps = 50/262 (19%)
Query: 98 AKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN------- 150
A + +L A + A + K FAIYRW+PDK +KP MQ Y++DLNN
Sbjct: 15 AAALGGARLQACRGAQTAAAAAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLD 74
Query: 151 -----------------------------------------KIDAN-DKVSKIYPLPHMY 168
+ID N KVSKIYPLPHMY
Sbjct: 75 ALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLSKVSKIYPLPHMY 134
Query: 169 VVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCST 227
V+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++DR+KLDGLYECILCACCST
Sbjct: 135 VIKDLVPDLSNFYAQYKSIEPYLKKKDESQGGKEQYLQSIEDREKLDGLYECILCACCST 194
Query: 228 SCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCP 287
SCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+DPFS+YRCHTIMNCT+TCP
Sbjct: 195 SCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTQTCP 254
Query: 288 KGLNPGRAIAEIKKLLSGLVKK 309
KGLNPG+AIAEIKK+++ +K
Sbjct: 255 KGLNPGKAIAEIKKMMATYKEK 276
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 109/170 (64%), Gaps = 24/170 (14%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLAC +ID N KVSKIYPL
Sbjct: 71 MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLSKVSKIYPL 130
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL-------GGPWKILGTLTAK----NIRSFQLSA 108
PHMYV+KDLVPD++NFYAQYKSI+ +L GG + L ++ + + L A
Sbjct: 131 PHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQGGKEQYLQSIEDREKLDGLYECILCA 190
Query: 109 AASSAVPAEKPAKYKTFAIYRWNPDK-PDEKPTMQEYKVDLNNKIDANDK 157
S++ P+ Y WN DK MQ Y+ ++++ D ++
Sbjct: 191 CCSTSCPS-----------YWWNGDKYLGPAVLMQAYRWMIDSRDDFTEE 229
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Query: 313 GLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G A +ID N KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L +
Sbjct: 108 GNTLACTRRIDTNLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 159
>sp|B0BM36|DHSB_XENTR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Xenopus tropicalis GN=sdhb PE=2 SV=1
Length = 284
Score = 285 bits (730), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 141/234 (60%), Positives = 166/234 (70%), Gaps = 50/234 (21%)
Query: 121 KYKTFAIYRWNPDKPDEKPTMQEYKVDLNN------------------------------ 150
+ K FAIYRW+PDKP +KP MQ Y+VDLN
Sbjct: 42 RIKKFAIYRWDPDKPGDKPRMQTYEVDLNECGSMVLDALIKIKNEMDPTLTFRRSCREGI 101
Query: 151 ------------------KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 191
+ID N KVSKIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L
Sbjct: 102 CGSCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYL 161
Query: 192 QR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 250
++ D+ G QYLQS++DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYR
Sbjct: 162 KKKDESQEGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYR 221
Query: 251 WIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
W+IDSRD+ T +RL +L+DPFS+YRCHTIMNCTRTCPKGLNPG+AIAEIKK+++
Sbjct: 222 WMIDSRDDYTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 275
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/87 (85%), Positives = 79/87 (90%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI G NTLAC +ID N KVSKIYPL
Sbjct: 75 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGGNTLACTVRIDTNLSKVSKIYPL 134
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYVVKDLVPD++NFYAQYKSI+ +L
Sbjct: 135 PHMYVVKDLVPDLSNFYAQYKSIEPYL 161
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 25/136 (18%)
Query: 232 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK---DPFSVYRCHTIMNCTRTCPK 288
Y W+ +K G MQ Y ++ D L ++K DP +R R+C +
Sbjct: 49 YRWDPDK-PGDKPRMQTYEVDLNECGSMVLDALIKIKNEMDPTLTFR--------RSCRE 99
Query: 289 GLNPGRAIAEIKKLLSGLVKKDKPGLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDM 347
G+ A+ ++G G A +ID N KVSKIYPLPHMYVVKDLVPD+
Sbjct: 100 GICGSCAMN-----ING-------GNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDL 147
Query: 348 NNFYAQYKSIQPWLPR 363
+NFYAQYKSI+P+L +
Sbjct: 148 SNFYAQYKSIEPYLKK 163
>sp|Q75CI4|DHSB_ASHGO Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SDH2 PE=3 SV=1
Length = 261
Score = 278 bits (710), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 144/253 (56%), Positives = 162/253 (64%), Gaps = 55/253 (21%)
Query: 101 IRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN---------- 150
IR AA SA +YK+F IYRWNPD P EKP MQEYKVDLN
Sbjct: 13 IRGLATQAAEVSAT------RYKSFKIYRWNPDTPAEKPRMQEYKVDLNKCGPMVLDALI 66
Query: 151 --------------------------------------KID-ANDKVSKIYPLPHMYVVK 171
KID A +K KIYPLPHMYVVK
Sbjct: 67 KIKNEQDPTLTFRRSCREGICGSCAMNIGGRNTLACLCKIDQAENKDVKIYPLPHMYVVK 126
Query: 172 DLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPS 231
DLVPD+ NFY QYKSIQP+LQ+ + ++LQS+ DRKKLDGLYECILCACCST+CPS
Sbjct: 127 DLVPDLTNFYKQYKSIQPYLQKASKPADGREHLQSIADRKKLDGLYECILCACCSTACPS 186
Query: 232 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291
YWWN E+YLGPAVLMQAYRW++DSRD A R QL++ SVYRCHTIMNCTRTCPKGLN
Sbjct: 187 YWWNNEQYLGPAVLMQAYRWMVDSRDGAGAGRREQLQNAMSVYRCHTIMNCTRTCPKGLN 246
Query: 292 PGRAIAEIKKLLS 304
PG+AIAEIKK L+
Sbjct: 247 PGKAIAEIKKALA 259
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/87 (83%), Positives = 77/87 (88%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKID-ANDKVSKIYPL 59
MVLDALIKIKNE DPTLTFRRSCREGICGSCAMNIGG NTLAC+ KID A +K KIYPL
Sbjct: 60 MVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIGGRNTLACLCKIDQAENKDVKIYPL 119
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMYVVKDLVPD+ NFY QYKSIQ +L
Sbjct: 120 PHMYVVKDLVPDLTNFYKQYKSIQPYL 146
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 317 AALHKID-ANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRS 364
A L KID A +K KIYPLPHMYVVKDLVPD+ NFY QYKSIQP+L ++
Sbjct: 101 ACLCKIDQAENKDVKIYPLPHMYVVKDLVPDLTNFYKQYKSIQPYLQKA 149
>sp|Q6FWS8|DHSB_CANGA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SDH2 PE=3
SV=1
Length = 253
Score = 274 bits (700), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 138/250 (55%), Positives = 159/250 (63%), Gaps = 49/250 (19%)
Query: 104 FQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN------------- 150
F L + A + KTF IYRWNPDKP EKP +QEYKVDL +
Sbjct: 2 FMLRVSRRGLATATSVPRLKTFKIYRWNPDKPTEKPHLQEYKVDLEDCGPMVLDALLKIK 61
Query: 151 -----------------------------------KIDAND-KVSKIYPLPHMYVVKDLV 174
KID ++ K +KIYPLPHM++VKDLV
Sbjct: 62 NEQDATLTFRRSCREGICGSCAMNIGGANTLACLCKIDQDESKTTKIYPLPHMFIVKDLV 121
Query: 175 PDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWW 234
PD+ FY QYKSIQP+LQR + LQS+DDRKKLDGLYECILCACCSTSCPSYWW
Sbjct: 122 PDLTGFYQQYKSIQPYLQRTDYPADGKEVLQSIDDRKKLDGLYECILCACCSTSCPSYWW 181
Query: 235 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGR 294
N E+YLGPAVLMQAYRW+IDSRD+ T R L++ S+YRCHTIMNCTRTCPKGLNPGR
Sbjct: 182 NQEEYLGPAVLMQAYRWLIDSRDQATKARRTMLQNSMSLYRCHTIMNCTRTCPKGLNPGR 241
Query: 295 AIAEIKKLLS 304
+IAEIKK L+
Sbjct: 242 SIAEIKKQLA 251
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 76/87 (87%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAND-KVSKIYPL 59
MVLDAL+KIKNE D TLTFRRSCREGICGSCAMNIGG NTLAC+ KID ++ K +KIYPL
Sbjct: 52 MVLDALLKIKNEQDATLTFRRSCREGICGSCAMNIGGANTLACLCKIDQDESKTTKIYPL 111
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHM++VKDLVPD+ FY QYKSIQ +L
Sbjct: 112 PHMFIVKDLVPDLTGFYQQYKSIQPYL 138
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 317 AALHKIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRS 364
A L KID ++ K +KIYPLPHM++VKDLVPD+ FY QYKSIQP+L R+
Sbjct: 93 ACLCKIDQDESKTTKIYPLPHMFIVKDLVPDLTGFYQQYKSIQPYLQRT 141
>sp|P21801|DHSB_YEAST Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SDH2 PE=1 SV=1
Length = 266
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 152/233 (65%), Gaps = 49/233 (21%)
Query: 121 KYKTFAIYRWNPDKPDEKPTMQEYKVDLNN------------------------------ 150
+ KTF +YRWNPD+P KP +Q Y+VDLN+
Sbjct: 32 RLKTFKVYRWNPDEPSAKPHLQSYQVDLNDCGPMVLDALLKIKDEQDSTLTFRRSCREGI 91
Query: 151 ------------------KIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 191
KID N+ K KIYPLPHM++VKDLVPD+ NFY QYKSIQP+L
Sbjct: 92 CGSCAMNIGGRNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYL 151
Query: 192 QRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRW 251
QR + LQS++DRKKLDGLYECILCACCSTSCPSYWWN E+YLGPAVLMQAYRW
Sbjct: 152 QRSSFPKDGTEVLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRW 211
Query: 252 IIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
+IDSRD+ T R L + S+YRCHTIMNCTRTCPKGLNPG AIAEIKK L+
Sbjct: 212 LIDSRDQATKTRKAMLNNSMSLYRCHTIMNCTRTCPKGLNPGLAIAEIKKSLA 264
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 76/87 (87%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAND-KVSKIYPL 59
MVLDAL+KIK+E D TLTFRRSCREGICGSCAMNIGG NTLACI KID N+ K KIYPL
Sbjct: 65 MVLDALLKIKDEQDSTLTFRRSCREGICGSCAMNIGGRNTLACICKIDQNESKQLKIYPL 124
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHM++VKDLVPD+ NFY QYKSIQ +L
Sbjct: 125 PHMFIVKDLVPDLTNFYQQYKSIQPYL 151
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 317 AALHKIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRS 364
A + KID N+ K KIYPLPHM++VKDLVPD+ NFY QYKSIQP+L RS
Sbjct: 106 ACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQRS 154
>sp|A8WPF0|DHSB_CAEBR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Caenorhabditis briggsae GN=sdhb-1 PE=3
SV=2
Length = 282
Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 130/255 (50%), Positives = 161/255 (63%), Gaps = 52/255 (20%)
Query: 115 PAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN------------------------ 150
P + + KTF IYR+NP+ P KPT+Q++ VDL+
Sbjct: 30 PKKTGNRIKTFEIYRFNPEAPGAKPTIQKFDVDLDQCGTMILDALIKIKNEVDPTLTFRR 89
Query: 151 ------------------------KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 185
KIDA+ K +KIYPLPHM+VVKDLVPDMN FYAQY
Sbjct: 90 SCREGICGSCAMNIGGENTLACICKIDADTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYA 149
Query: 186 SIQPWLQRDKE-NIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAV 244
SIQPW+Q+ +G Q QS+ +R +LDGLYECILCACCSTSCPSYWWN +KYLGPAV
Sbjct: 150 SIQPWIQKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAV 209
Query: 245 LMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
LMQAYRW+IDSRD+ +RL+++ D FS ++CHTIMNCT+TCPK LNP +AI EIK LL+
Sbjct: 210 LMQAYRWVIDSRDDYAQERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLLT 269
Query: 305 GLVKKDKPGLDTAAL 319
G K KP + +A
Sbjct: 270 GF--KSKPAAEPSAF 282
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/91 (81%), Positives = 79/91 (86%), Gaps = 6/91 (6%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
M+LDALIKIKNE+DPTLTFRRSCREGICGSCAMNIGG NTLACI KIDA+ K +KIYPL
Sbjct: 69 MILDALIKIKNEVDPTLTFRRSCREGICGSCAMNIGGENTLACICKIDADTSKSTKIYPL 128
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
PHM+VVKDLVPDMN FYAQY SIQ PW
Sbjct: 129 PHMFVVKDLVPDMNLFYAQYASIQ-----PW 154
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 317 AALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
A + KIDA+ K +KIYPLPHM+VVKDLVPDMN FYAQY SIQPW+ +
Sbjct: 110 ACICKIDADTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQK 157
>sp|P21911|DHSB_SCHPO Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sdh2 PE=3 SV=3
Length = 275
Score = 257 bits (657), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 134/264 (50%), Positives = 162/264 (61%), Gaps = 53/264 (20%)
Query: 92 ILGTLTAKNIRSFQLSA--AASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 149
L +N R A +A+SA P + KTF IYRWNP+KP+ KP +Q+Y VDL
Sbjct: 12 FLKHFVNRNARMMATEANISATSANPQSQGENLKTFEIYRWNPEKPEVKPKLQKYTVDLT 71
Query: 150 N------------------------------------------------KIDANDKVSKI 161
I ++K +KI
Sbjct: 72 KCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGSNTLACICNIKKDNKPTKI 131
Query: 162 YPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENI-GNAQYLQSLDDRKKLDGLYECI 220
YPLPH ++VKDLVPD+ FY QYKSI+PWLQ D NI + ++ QS DR KLDGLYECI
Sbjct: 132 YPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQND--NIPKDKEFYQSRADRAKLDGLYECI 189
Query: 221 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIM 280
LCACCSTSCPSYWWN E+YLGPAVLMQAYRWIIDSRD+ TA RL+ +++ SVYRCHTIM
Sbjct: 190 LCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQATAKRLDVMQNSMSVYRCHTIM 249
Query: 281 NCTRTCPKGLNPGRAIAEIKKLLS 304
NC RTCPKGLNPG AIA++K L++
Sbjct: 250 NCARTCPKGLNPGLAIAKVKALMA 273
Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 73/90 (81%), Gaps = 5/90 (5%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNE DPTLTFRRSCREGICGSCAMNI G NTLACI I ++K +KIYPLP
Sbjct: 76 MVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGSNTLACICNIKKDNKPTKIYPLP 135
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
H ++VKDLVPD+ FY QYKSI+ PW
Sbjct: 136 HCFIVKDLVPDLTYFYKQYKSIE-----PW 160
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 317 AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
A + I ++K +KIYPLPH ++VKDLVPD+ FY QYKSI+PWL
Sbjct: 117 ACICNIKKDNKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWL 161
>sp|Q09545|DHSB_CAEEL Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Caenorhabditis elegans GN=sdhb-1 PE=2
SV=1
Length = 298
Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/239 (52%), Positives = 154/239 (64%), Gaps = 50/239 (20%)
Query: 121 KYKTFAIYRWNPDKPDEKPTMQEYKVDLNN------------------------------ 150
+ KTF IYR+NP+ P KPT+Q++ VDL+
Sbjct: 52 RIKTFEIYRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTFRRSCREGI 111
Query: 151 ------------------KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 191
KID++ K +KIYPLPHM+VVKDLVPDMN FYAQY SIQPW+
Sbjct: 112 CGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWI 171
Query: 192 QRDKE-NIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 250
Q+ +G Q QS+ +R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYR
Sbjct: 172 QKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYR 231
Query: 251 WIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVKK 309
W+IDSRD+ +RL+++ D FS ++CHTIMNCT+TCPK LNP +AI EIK LL+G K
Sbjct: 232 WVIDSRDDYATERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLLTGFTSK 290
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 79/91 (86%), Gaps = 6/91 (6%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
M+LDALIKIKNE+DPTLTFRRSCREGICGSCAMNIGG NTLACI KID++ K +KIYPL
Sbjct: 85 MILDALIKIKNEVDPTLTFRRSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPL 144
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
PHM+VVKDLVPDMN FYAQY SIQ PW
Sbjct: 145 PHMFVVKDLVPDMNLFYAQYASIQ-----PW 170
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 317 AALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
A + KID++ K +KIYPLPHM+VVKDLVPDMN FYAQY SIQPW+ +
Sbjct: 126 ACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQK 173
>sp|O42772|DHSB_MYCGR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Mycosphaerella graminicola GN=SDH2 PE=3
SV=1
Length = 297
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/234 (55%), Positives = 150/234 (64%), Gaps = 49/234 (20%)
Query: 120 AKYKTFAIYRWNPDKPDEKPTMQEYKVDLN--------------NKIDAN---------- 155
AK KTF IYRWNPD+P +KP MQ Y +DLN N++D
Sbjct: 61 AKTKTFHIYRWNPDQPTDKPRMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREG 120
Query: 156 -------------------------DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPW 190
K ++IYPLPH YVVKDLVPDM FY QYKSI+P+
Sbjct: 121 ICGSCAMNIDGVNTLACLCRIPTDTAKETRIYPLPHTYVVKDLVPDMTQFYKQYKSIKPY 180
Query: 191 LQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 250
LQRD + QS+ DRKKLDGLYECILCACCSTSCPSYWWN E+YLGPAVL+Q+YR
Sbjct: 181 LQRDTAPPDGKENRQSVADRKKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLLQSYR 240
Query: 251 WIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
WI DSRDEKTA R + L + S+YRCHTI+NC+RTCPKGLNP AIAEIKK ++
Sbjct: 241 WINDSRDEKTAQRKDALNNSMSLYRCHTILNCSRTCPKGLNPALAIAEIKKSMA 294
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 75/87 (86%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAND-KVSKIYPL 59
M+LDALI+IKNE+DPTLTFRRSCREGICGSCAMNI GVNTLAC+ +I + K ++IYPL
Sbjct: 95 MMLDALIRIKNEVDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIPTDTAKETRIYPL 154
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PH YVVKDLVPDM FY QYKSI+ +L
Sbjct: 155 PHTYVVKDLVPDMTQFYKQYKSIKPYL 181
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Query: 313 GLDT-AALHKIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
G++T A L +I + K ++IYPLPH YVVKDLVPDM FY QYKSI+P+L R
Sbjct: 131 GVNTLACLCRIPTDTAKETRIYPLPHTYVVKDLVPDMTQFYKQYKSIKPYLQR 183
>sp|P32420|DHSB_USTMA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Ustilago maydis (strain 521 / FGSC
9021) GN=SDH2 PE=3 SV=1
Length = 295
Score = 252 bits (643), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 128/259 (49%), Positives = 162/259 (62%), Gaps = 55/259 (21%)
Query: 97 TAKNIRSFQLSAAASSAVPAE-------KPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 149
++ + +F +AAA A P KP K F IYRWNPDKP EKP +Q Y +DLN
Sbjct: 20 SSSRVAAFSTTAAARLATPTSDNVGSSGKPQHLKQFKIYRWNPDKPSEKPRLQSYTLDLN 79
Query: 150 --------------NKIDAN-------------------DKV--------------SKIY 162
N+ID D V +KIY
Sbjct: 80 QTGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIDKQNDTKIY 139
Query: 163 PLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILC 222
PLPHMY+VKDLVPD+ FY QY+SI+P+L+ + ++LQS ++R++LDGLYECILC
Sbjct: 140 PLPHMYIVKDLVPDLTQFYKQYRSIEPFLKSNN-TPSEGEHLQSPEERRRLDGLYECILC 198
Query: 223 ACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNC 282
ACCSTSCPSYWWN ++YLGPAVLMQAYRW+ DSRD+ +R +L++ FS+YRCHTIMNC
Sbjct: 199 ACCSTSCPSYWWNQDEYLGPAVLMQAYRWMADSRDDFGEERRQKLENTFSLYRCHTIMNC 258
Query: 283 TRTCPKGLNPGRAIAEIKK 301
+RTCPK LNPG+AIA+IKK
Sbjct: 259 SRTCPKNLNPGKAIAQIKK 277
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 75/86 (87%), Gaps = 1/86 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNI GVNTLAC+ +ID + +KIYPLP
Sbjct: 84 MVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIDKQND-TKIYPLP 142
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHL 86
HMY+VKDLVPD+ FY QY+SI+ L
Sbjct: 143 HMYIVKDLVPDLTQFYKQYRSIEPFL 168
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 27/134 (20%)
Query: 232 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK---DPFSVYRCHTIMNCTRTCPK 288
Y WN +K +Q+Y ++ D L ++K DP +R R+C +
Sbjct: 58 YRWNPDK-PSEKPRLQSYTLDLNQTGPMVLDALIKIKNEIDPTLTFR--------RSCRE 108
Query: 289 GLNPGRAIAEIKKLLSGLVKKDKPGLDT-AALHKIDANDKVSKIYPLPHMYVVKDLVPDM 347
G+ G + G++T A L +ID + +KIYPLPHMY+VKDLVPD+
Sbjct: 109 GI-------------CGSCAMNIDGVNTLACLCRIDKQND-TKIYPLPHMYIVKDLVPDL 154
Query: 348 NNFYAQYKSIQPWL 361
FY QY+SI+P+L
Sbjct: 155 TQFYKQYRSIEPFL 168
>sp|Q1RGP3|DHSB_RICBR Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia bellii
(strain RML369-C) GN=sdhB PE=3 SV=1
Length = 261
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 157/233 (67%), Gaps = 49/233 (21%)
Query: 120 AKYKTFAIYRWNPDKPDEKPTMQEYKVDLN--------------NKIDAN---------- 155
+ + IYR++PD DE PT+ +++DL+ N+ID+
Sbjct: 25 SNLRKIKIYRYDPDL-DENPTIDSFEIDLSKTGPMVLDALIKIKNEIDSTVTFRRSCREG 83
Query: 156 ---------------------DKVS---KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 191
+++S KIYPLPHM VVKDLVPDM++FYAQY+SI+PWL
Sbjct: 84 ICGSCAMNIDGTNTLACIKPIEEISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWL 143
Query: 192 QRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRW 251
+ D NA+ LQS+ DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPA+L+QAYRW
Sbjct: 144 KTDSPAPSNAERLQSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRW 203
Query: 252 IIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
I DSRD+ T +RL L+DPF +YRCHTIMNCT+TCPKGLNP +AI+EIK L++
Sbjct: 204 IADSRDDHTGERLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAISEIKGLIA 256
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 93/158 (58%), Gaps = 26/158 (16%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNE+D T+TFRRSCREGICGSCAMNI G NTLACI I+ KIYPLP
Sbjct: 58 MVLDALIKIKNEIDSTVTFRRSCREGICGSCAMNIDGTNTLACIKPIEEISGDIKIYPLP 117
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQ--------------- 105
HM VVKDLVPDM++FYAQY+SI+ PW + N Q
Sbjct: 118 HMKVVKDLVPDMSHFYAQYESIE-----PWLKTDSPAPSNAERLQSIKDREKLDGLYECI 172
Query: 106 LSAAASSAVPAE--KPAKYKTFAI----YRWNPDKPDE 137
L A S++ P+ KY AI YRW D D+
Sbjct: 173 LCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDD 210
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 31/32 (96%)
Query: 330 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
KIYPLPHM VVKDLVPDM++FYAQY+SI+PWL
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYAQYESIEPWL 143
>sp|P80480|DHSB_RECAM Succinate dehydrogenase [ubiquinone] iron-sulfur subunit
OS=Reclinomonas americana GN=SDH2 PE=3 SV=1
Length = 239
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 155/238 (65%), Gaps = 50/238 (21%)
Query: 118 KPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN--------------------------- 150
K K F +YRWNPDK EKP + Y VDLN+
Sbjct: 4 KKEKIMLFKVYRWNPDK-KEKPHISTYSVDLNSCGPMVLDALIKIKNEQDSTLTFRRSCR 62
Query: 151 ---------------------KIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQP 189
ID N K KIYPLPHM+++KDLVPD++NFYAQYKSI+P
Sbjct: 63 EGVCGSCAMNIDGTNTLACIKSIDTNKKEMKIYPLPHMHIIKDLVPDLSNFYAQYKSIEP 122
Query: 190 WLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAY 249
W++ ++ + + ++ QS +DR+KLDGLYEC+LCACCSTSCPSYWWN +KYLGPAVL+QAY
Sbjct: 123 WMKTTEKKL-DKEFYQSRNDREKLDGLYECVLCACCSTSCPSYWWNSDKYLGPAVLLQAY 181
Query: 250 RWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLV 307
RWI+DSRD+ T +RL L+DPF +YRCHTI+NCT+TCPK LNP +AIA+IK+ ++ L
Sbjct: 182 RWIVDSRDQGTRERLQYLEDPFKLYRCHTILNCTKTCPKHLNPAQAIAKIKQNITLLT 239
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 75/90 (83%), Gaps = 5/90 (5%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNE D TLTFRRSCREG+CGSCAMNI G NTLACI ID N K KIYPLP
Sbjct: 39 MVLDALIKIKNEQDSTLTFRRSCREGVCGSCAMNIDGTNTLACIKSIDTNKKEMKIYPLP 98
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
HM+++KDLVPD++NFYAQYKSI+ PW
Sbjct: 99 HMHIIKDLVPDLSNFYAQYKSIE-----PW 123
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 38/45 (84%)
Query: 317 AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
A + ID N K KIYPLPHM+++KDLVPD++NFYAQYKSI+PW+
Sbjct: 80 ACIKSIDTNKKEMKIYPLPHMHIIKDLVPDLSNFYAQYKSIEPWM 124
>sp|Q92JJ8|DHSB_RICCN Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=sdhB PE=3 SV=1
Length = 261
Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 157/236 (66%), Gaps = 49/236 (20%)
Query: 117 EKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN--------------NKIDAN------- 155
E+ K + IYR++PD D+ PT+ +++DL+ N+ID+
Sbjct: 22 EEMLKPRKIKIYRYDPDL-DKNPTIDSFEIDLSKTGPMILDALIKIKNEIDSTLTFRRSC 80
Query: 156 ------------------------DKVS---KIYPLPHMYVVKDLVPDMNNFYAQYKSIQ 188
+ +S KIYPLPHM VVKDLVPDM++FYAQY+SI+
Sbjct: 81 REGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIE 140
Query: 189 PWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQA 248
PWL+ D N++ LQS+ DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPA+L+QA
Sbjct: 141 PWLKTDSPTPSNSERLQSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQA 200
Query: 249 YRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
YRWI DSRD+ T +RL L+DPF +YRCHTIMNCT+TCPKGLNP +AI +IK L++
Sbjct: 201 YRWIADSRDDNTGERLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAIGKIKSLIA 256
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 89/149 (59%), Gaps = 31/149 (20%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
M+LDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLACI I+ KIYPLP
Sbjct: 58 MILDALIKIKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLP 117
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQ--------------- 105
HM VVKDLVPDM++FYAQY+SI+ PW + T N Q
Sbjct: 118 HMKVVKDLVPDMSHFYAQYESIE-----PWLKTDSPTPSNSERLQSIKDREKLDGLYECI 172
Query: 106 LSAAASSAVPAEKPAKYKTFAIYRWNPDK 134
L A S++ P+ Y WN DK
Sbjct: 173 LCACCSTSCPS-----------YWWNGDK 190
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 31/32 (96%)
Query: 330 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
KIYPLPHM VVKDLVPDM++FYAQY+SI+PWL
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYAQYESIEPWL 143
>sp|Q9ZEA1|DHSB_RICPR Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia
prowazekii (strain Madrid E) GN=sdhB PE=3 SV=1
Length = 261
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/235 (52%), Positives = 155/235 (65%), Gaps = 52/235 (22%)
Query: 118 KPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN--------------NKIDAN-------- 155
KP K K +YR++PD DE PT+ +++DL+ N+ID+
Sbjct: 26 KPRKVK---VYRYDPDL-DENPTIDSFEIDLSKTGPMVLDALIKIKNEIDSTLTFRRSCR 81
Query: 156 -----------------------DKVS---KIYPLPHMYVVKDLVPDMNNFYAQYKSIQP 189
+ +S KIYPLPHM VVKDLVPDM++FYAQY+SI+P
Sbjct: 82 EGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEP 141
Query: 190 WLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAY 249
WL+ D N++ LQS+ DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPA+L+QAY
Sbjct: 142 WLKNDSPAPSNSERLQSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAY 201
Query: 250 RWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
RWI DSRD+ T RL L+DPF +YRCHTIMNCT+TCPKGLNP +AI +K L++
Sbjct: 202 RWIADSRDDNTGARLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAIGRVKNLIA 256
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 73/90 (81%), Gaps = 5/90 (5%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLACI I+ KIYPLP
Sbjct: 58 MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLP 117
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
HM VVKDLVPDM++FYAQY+SI+ PW
Sbjct: 118 HMKVVKDLVPDMSHFYAQYESIE-----PW 142
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 31/32 (96%)
Query: 330 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
KIYPLPHM VVKDLVPDM++FYAQY+SI+PWL
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYAQYESIEPWL 143
>sp|Q4UN71|DHSB_RICFE Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=sdhB PE=3 SV=1
Length = 261
Score = 242 bits (617), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 123/235 (52%), Positives = 156/235 (66%), Gaps = 52/235 (22%)
Query: 118 KPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN--------------NKIDAN-------- 155
KP K K IYR++PD DE PT+ +++DL+ N+ID+
Sbjct: 26 KPRKVK---IYRYDPDL-DENPTIDSFEIDLSKTGPMVLDALIKIKNEIDSTLTFRRSCR 81
Query: 156 -----------------------DKVS---KIYPLPHMYVVKDLVPDMNNFYAQYKSIQP 189
+++S KIYPLPHM VVKDLVPDM++FYAQY+SI+P
Sbjct: 82 EGICGSCSMNIDGTNTLACIKPIEEISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEP 141
Query: 190 WLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAY 249
WL+ D N++ LQS+ R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPA+L+QAY
Sbjct: 142 WLKTDSPTPSNSERLQSIKGREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAY 201
Query: 250 RWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304
RWI DSRD+ T +RL L+DP +YRCHTIMNCT+TCPKGLNP +AI +IK L++
Sbjct: 202 RWIADSRDDHTGERLEDLEDPSKLYRCHTIMNCTKTCPKGLNPAKAIGKIKSLIA 256
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 89/149 (59%), Gaps = 31/149 (20%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNE+D TLTFRRSCREGICGSC+MNI G NTLACI I+ KIYPLP
Sbjct: 58 MVLDALIKIKNEIDSTLTFRRSCREGICGSCSMNIDGTNTLACIKPIEEISGDIKIYPLP 117
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQ--------------- 105
HM VVKDLVPDM++FYAQY+SI+ PW + T N Q
Sbjct: 118 HMKVVKDLVPDMSHFYAQYESIE-----PWLKTDSPTPSNSERLQSIKGREKLDGLYECI 172
Query: 106 LSAAASSAVPAEKPAKYKTFAIYRWNPDK 134
L A S++ P+ Y WN DK
Sbjct: 173 LCACCSTSCPS-----------YWWNGDK 190
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 31/32 (96%)
Query: 330 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
KIYPLPHM VVKDLVPDM++FYAQY+SI+PWL
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYAQYESIEPWL 143
>sp|Q70KF8|DHSB_UROFA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Uromyces fabae GN=SDH2 PE=3 SV=1
Length = 283
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/244 (50%), Positives = 154/244 (63%), Gaps = 56/244 (22%)
Query: 111 SSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN--------------NKIDA-- 154
SSAVP K F+IYRWNPD+P +KPT+Q Y +DL N++D
Sbjct: 46 SSAVPV------KEFSIYRWNPDEPSKKPTLQTYSIDLKKCGPMVLDALIKIKNELDPTL 99
Query: 155 ------------------------------NDKVS---KIYPLPHMYVVKDLVPDMNNFY 181
N + S KIYPLPHMY++KDLVPDM +FY
Sbjct: 100 TFRRSCREGICGSCAMNIDGVNTLACLKRINKETSAPVKIYPLPHMYIIKDLVPDMTHFY 159
Query: 182 AQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLG 241
QYKSI+P+L+ D ++LQS +DRKKLDG+YECILCACCSTSCPSYWWN ++YLG
Sbjct: 160 KQYKSIEPFLKNDNPP-AQGEFLQSPEDRKKLDGMYECILCACCSTSCPSYWWNQDEYLG 218
Query: 242 PAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKK 301
PAVLMQAYRW+ DSRD DR +L++ S+YRCHTI NCT+TCPKGLNP +AI+ IK+
Sbjct: 219 PAVLMQAYRWMADSRDSYGEDRKEKLQNTLSLYRCHTIFNCTKTCPKGLNPAKAISHIKR 278
Query: 302 LLSG 305
++
Sbjct: 279 EMAS 282
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVS-KIYPL 59
MVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNI GVNTLAC+ +I+ KIYPL
Sbjct: 83 MVLDALIKIKNELDPTLTFRRSCREGICGSCAMNIDGVNTLACLKRINKETSAPVKIYPL 142
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PHMY++KDLVPDM +FY QYKSI+ L
Sbjct: 143 PHMYIIKDLVPDMTHFYKQYKSIEPFL 169
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 313 GLDT-AALHKIDANDKVS-KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
G++T A L +I+ KIYPLPHMY++KDLVPDM +FY QYKSI+P+L
Sbjct: 119 GVNTLACLKRINKETSAPVKIYPLPHMYIIKDLVPDMTHFYKQYKSIEPFL 169
>sp|Q68XS0|DHSB_RICTY Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=sdhB PE=3 SV=1
Length = 261
Score = 238 bits (607), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 103/145 (71%), Positives = 123/145 (84%)
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 219
KIYPLPHM VVKDLVPDM++FY QY+SI+PWL+ D N++ LQS+ DR+KLDGLYEC
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYTQYESIEPWLKNDNPAPSNSERLQSIQDREKLDGLYEC 171
Query: 220 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI 279
ILCACCSTSCPSYWWN +KYLGPA+L+QAYRWI DSRD+ T RL L+DPF +YRCHTI
Sbjct: 172 ILCACCSTSCPSYWWNSDKYLGPAILLQAYRWIADSRDDNTGARLEALEDPFKLYRCHTI 231
Query: 280 MNCTRTCPKGLNPGRAIAEIKKLLS 304
MNCT+TCPKGLNP +AI +K L++
Sbjct: 232 MNCTKTCPKGLNPAKAIGRVKSLIA 256
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 72/90 (80%), Gaps = 5/90 (5%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNE+D TLTFRRSCREGICGSCAMNI G NTLACI I+ KIYPLP
Sbjct: 58 MVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLP 117
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
HM VVKDLVPDM++FY QY+SI+ PW
Sbjct: 118 HMKVVKDLVPDMSHFYTQYESIE-----PW 142
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 30/32 (93%)
Query: 330 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
KIYPLPHM VVKDLVPDM++FY QY+SI+PWL
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYTQYESIEPWL 143
>sp|Q8LB02|DHSB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2,
mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1
SV=2
Length = 280
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/245 (49%), Positives = 144/245 (58%), Gaps = 50/245 (20%)
Query: 107 SAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN---------------- 150
S A S A A KTF IYRWNPD P KP +Q+YK+DL +
Sbjct: 33 SEAQSKASTGGGGASLKTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEM 91
Query: 151 --------------------------------KIDANDKVSKIYPLPHMYVVKDLVPDMN 178
KI++ K + I PLPHM+V+KDLV DM
Sbjct: 92 DPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIESGSKETTITPLPHMFVIKDLVVDMT 151
Query: 179 NFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGE 237
NFY QYKSI+PWL+R + ++ + LQS DR KLDG+YECILCACCSTSCPSYWWN E
Sbjct: 152 NFYNQYKSIEPWLKRKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPE 211
Query: 238 KYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIA 297
YLGPA L+ A RWI DSRDE T +RL + D F +YRCHTI+NC R CPKGLNPG+ I
Sbjct: 212 SYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIT 271
Query: 298 EIKKL 302
IK+L
Sbjct: 272 HIKQL 276
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 74/90 (82%), Gaps = 5/90 (5%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNEMDP+LTFRRSCREGICGSCAMNI G N LAC++KI++ K + I PLP
Sbjct: 79 MVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIESGSKETTITPLP 138
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
HM+V+KDLV DM NFY QYKSI+ PW
Sbjct: 139 HMFVIKDLVVDMTNFYNQYKSIE-----PW 163
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 317 AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
A L KI++ K + I PLPHM+V+KDLV DM NFY QYKSI+PWL R
Sbjct: 120 ACLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 166
>sp|Q8LBZ7|DHSB1_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1,
mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1
SV=2
Length = 279
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/271 (45%), Positives = 150/271 (55%), Gaps = 60/271 (22%)
Query: 91 KILGTLTAKNIRSFQLSAAASSAVPAEKPAK----------YKTFAIYRWNPDKPDEKPT 140
+++GT +K + +L A ++ AE K KTF IYRWNPD P KP
Sbjct: 8 RLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPDNPG-KPE 66
Query: 141 MQEYKVDLNN------------------------------------------------KI 152
+Q Y++DL + KI
Sbjct: 67 LQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKI 126
Query: 153 DANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDK-ENIGNAQYLQSLDDRK 211
+ I PLPHM+V+KDLV DM NFY QYKSI+PWL+R ++ + LQS DR
Sbjct: 127 QDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQSKKDRA 186
Query: 212 KLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPF 271
KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A RWI DSRDE T +RL + D F
Sbjct: 187 KLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEF 246
Query: 272 SVYRCHTIMNCTRTCPKGLNPGRAIAEIKKL 302
+YRCHTI+NC R CPKGLNPG+ I IK+L
Sbjct: 247 KLYRCHTILNCARACPKGLNPGKQITHIKQL 277
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 90/149 (60%), Gaps = 32/149 (21%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNEMDP+LTFRRSCREGICGSCAMNI G N LAC++KI + I PLP
Sbjct: 80 MVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIQDEASETTITPLP 139
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPW---KILGTLTAKNIRSFQ------------ 105
HM+V+KDLV DM NFY QYKSI+ PW K ++ AK I +
Sbjct: 140 HMFVIKDLVVDMTNFYNQYKSIE-----PWLKRKTPASVPAKEILQSKKDRAKLDGMYEC 194
Query: 106 -LSAAASSAVPAEKPAKYKTFAIYRWNPD 133
L A S++ P+ Y WNP+
Sbjct: 195 ILCACCSTSCPS-----------YWWNPE 212
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 33/47 (70%)
Query: 317 AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
A L KI + I PLPHM+V+KDLV DM NFY QYKSI+PWL R
Sbjct: 121 ACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 167
>sp|Q59662|DHSB_PARDE Succinate dehydrogenase iron-sulfur subunit OS=Paracoccus
denitrificans GN=sdhB PE=3 SV=1
Length = 259
Score = 221 bits (563), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 145/235 (61%), Gaps = 50/235 (21%)
Query: 117 EKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN--------------NKIDAN------- 155
E + F IYRW+PD E P + Y VD++ N+ID
Sbjct: 22 EGATNVRRFNIYRWDPDT-GENPRIDTYFVDMDKCGPMVLDALIKIKNEIDPTLTFRRSC 80
Query: 156 ------------------------DKVS---KIYPLPHMYVVKDLVPDMNNFYAQYKSIQ 188
D++ IYPLPHM VVKDLVPD+ +FYAQ+ S+Q
Sbjct: 81 REGICGSCAMNIDGGNHLACIYGMDEIKGDVNIYPLPHMPVVKDLVPDLTHFYAQHASVQ 140
Query: 189 PWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQA 248
P+L + + ++ QS++DRKKLDGLYEC++CA CST+CPSYWWNG++YLGPA L+ A
Sbjct: 141 PYLITETPT-PDKEWRQSIEDRKKLDGLYECVMCASCSTACPSYWWNGDRYLGPAALLHA 199
Query: 249 YRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLL 303
YRWIIDSRDE T +RL+ L+DPF +YRCHTIMNCT TCPKGLNP +AIA IK ++
Sbjct: 200 YRWIIDSRDEATGERLDSLEDPFKLYRCHTIMNCTNTCPKGLNPAKAIASIKHMM 254
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 70/86 (81%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
MVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNI G N LACI +D IYPLP
Sbjct: 58 MVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGGNHLACIYGMDEIKGDVNIYPLP 117
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHL 86
HM VVKDLVPD+ +FYAQ+ S+Q +L
Sbjct: 118 HMPVVKDLVPDLTHFYAQHASVQPYL 143
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 313 GLDTAALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
G A ++ +D IYPLPHM VVKDLVPD+ +FYAQ+ S+QP+L
Sbjct: 95 GNHLACIYGMDEIKGDVNIYPLPHMPVVKDLVPDLTHFYAQHASVQPYL 143
>sp|P48933|DHSB_CYACA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit
OS=Cyanidium caldarium GN=SDH2 PE=3 SV=1
Length = 262
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 99/156 (63%), Positives = 118/156 (75%)
Query: 151 KIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDR 210
K++ + + +YPLPH++V+KDLV D+ NFYAQY+ IQPWLQ + QS DR
Sbjct: 96 KLNIKNNIIYVYPLPHIFVLKDLVVDLTNFYAQYRLIQPWLQSSLNIKSKKEIYQSKQDR 155
Query: 211 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDP 270
LDGLYECILCACCS SCPSYWWN +KYLGPAVL+QAYRWI+DSRD+ T RL LKD
Sbjct: 156 LYLDGLYECILCACCSASCPSYWWNHDKYLGPAVLLQAYRWIVDSRDDNTLSRLLSLKDS 215
Query: 271 FSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGL 306
+ +YRCHTIMNCT+TCPK LNPG+ IA IKK L L
Sbjct: 216 YKLYRCHTIMNCTKTCPKHLNPGKVIASIKKRLLNL 251
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 72/90 (80%), Gaps = 5/90 (5%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
+VLDALIKIKNE D T++FRRSCREGICGSCA+NI G N+LAC+ K++ + + +YPLP
Sbjct: 51 IVLDALIKIKNECDSTVSFRRSCREGICGSCAININGTNSLACLQKLNIKNNIIYVYPLP 110
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
H++V+KDLV D+ NFYAQY+ IQ PW
Sbjct: 111 HIFVLKDLVVDLTNFYAQYRLIQ-----PW 135
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 317 AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRSI 365
A L K++ + + +YPLPH++V+KDLV D+ NFYAQY+ IQPWL S+
Sbjct: 92 ACLQKLNIKNNIIYVYPLPHIFVLKDLVVDLTNFYAQYRLIQPWLQSSL 140
>sp|Q9FJP9|DHSB3_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3,
mitochondrial OS=Arabidopsis thaliana GN=SDH2-3 PE=2
SV=1
Length = 309
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 150/269 (55%), Gaps = 58/269 (21%)
Query: 87 GGPWKIL-GTLTAKNIRSFQLSAAASSAVPAEKPAKYKT----FAIYRWNPDKPDEKPTM 141
GG + IL G A+++ L S + EK ++K F IYRWNPDKP+ KP +
Sbjct: 29 GGDFPILNGHKAAQDLSKDTLK---SQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFL 85
Query: 142 QEYKVDLNN----------KIDANDKVSKIY----------------------------- 162
Q + VDL++ KI A D S Y
Sbjct: 86 QSFFVDLSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPIN 145
Query: 163 ----------PLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKK 212
PLPHMYV+KDLV D+ NFY QYKS++PWL+ K ++ QS DRKK
Sbjct: 146 PNTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKK 205
Query: 213 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFS 272
LDGLYECILCACC+TSCPSYWWN E++ GPA L+QAYRWI DSRDE +RL + + +
Sbjct: 206 LDGLYECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESET 265
Query: 273 -VYRCHTIMNCTRTCPKGLNPGRAIAEIK 300
VYRC I NCT TCPKGLNP AI ++K
Sbjct: 266 KVYRCRAIKNCTATCPKGLNPASAILKMK 294
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 6/91 (6%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDAN-DKVSKIYPL 59
MVLD L KIK E D +L++RRSCREGICGSC+MNI G NT+AC+ I+ N K + I PL
Sbjct: 98 MVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKPTIITPL 157
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
PHMYV+KDLV D+ NFY QYKS++ PW
Sbjct: 158 PHMYVIKDLVVDLTNFYQQYKSME-----PW 183
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 313 GLDTAA-LHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
G +T A L I+ N K + I PLPHMYV+KDLV D+ NFY QYKS++PWL
Sbjct: 134 GTNTVACLKPINPNTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWL 184
>sp|P48932|DHSB_CHOCR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit
OS=Chondrus crispus GN=SDH2 PE=3 SV=1
Length = 250
Score = 211 bits (538), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 95/140 (67%), Positives = 114/140 (81%), Gaps = 1/140 (0%)
Query: 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECI 220
IYPLPH Y++KDLVPD++NFYAQYK I+PWL +K + LQS DR +LDGLYECI
Sbjct: 106 IYPLPHTYIIKDLVPDLSNFYAQYKLIKPWLI-NKIGFSLKENLQSKIDRLELDGLYECI 164
Query: 221 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIM 280
LCACCS SCPSYWWN +KYLGPA+L+QAYRWI+DSRD T +RLN L + ++RCHTIM
Sbjct: 165 LCACCSASCPSYWWNQDKYLGPAILLQAYRWIVDSRDNSTENRLNFLNNKMRLFRCHTIM 224
Query: 281 NCTRTCPKGLNPGRAIAEIK 300
NC++TCPK LNPG+AIA IK
Sbjct: 225 NCSKTCPKSLNPGKAIASIK 244
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 102/173 (58%), Gaps = 29/173 (16%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
M+LDALI+IKN D +LTFRRSCREGICGSC+MNI G N+LAC+ ++ IYPLP
Sbjct: 51 MILDALIQIKNIQDSSLTFRRSCREGICGSCSMNIDGTNSLACLRSLNTKSNFITIYPLP 110
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPWKI--LGTLTAKNIRS------------FQL 106
H Y++KDLVPD++NFYAQYK I+ PW I +G +N++S L
Sbjct: 111 HTYIIKDLVPDLSNFYAQYKLIK-----PWLINKIGFSLKENLQSKIDRLELDGLYECIL 165
Query: 107 SAAASSAVPAE--KPAKYKTFAI----YRWNPDKPDEKPTMQEYKVD-LNNKI 152
A S++ P+ KY AI YRW D D E +++ LNNK+
Sbjct: 166 CACCSASCPSYWWNQDKYLGPAILLQAYRWIVDSRDNS---TENRLNFLNNKM 215
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 317 AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRSI 365
A L ++ IYPLPH Y++KDLVPD++NFYAQYK I+PWL I
Sbjct: 92 ACLRSLNTKSNFITIYPLPHTYIIKDLVPDLSNFYAQYKLIKPWLINKI 140
>sp|P80477|DHSB_PORPU Succinate dehydrogenase [ubiquinone] iron-sulfur subunit
OS=Porphyra purpurea GN=SDH2 PE=3 SV=1
Length = 239
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 115/149 (77%), Gaps = 2/149 (1%)
Query: 152 IDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRK 211
I N + IYPLPHMY++KDLVPD++NF++QYK I+PWL + ++YLQS DR
Sbjct: 87 IKTNANIITIYPLPHMYIIKDLVPDLSNFFSQYKYIKPWLINNVPK--KSEYLQSEKDRS 144
Query: 212 KLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPF 271
+L+G+YECILCACCS SCPSYWWN +KYLGPA+L+QAYRW+ DSRD +RL L
Sbjct: 145 ELNGIYECILCACCSASCPSYWWNHDKYLGPAILLQAYRWLADSRDTNAKERLKLLGGKS 204
Query: 272 SVYRCHTIMNCTRTCPKGLNPGRAIAEIK 300
+++CHTIMNC+RTCPK LNPG+AIA IK
Sbjct: 205 KLFKCHTIMNCSRTCPKSLNPGKAIASIK 233
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 73/92 (79%), Gaps = 5/92 (5%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
M+LDALIKIK+E D +L FRRSCREGICGSC+MNI G+NTLAC+ I N + IYPLP
Sbjct: 41 MILDALIKIKDEQDSSLAFRRSCREGICGSCSMNIDGINTLACLKPIKTNANIITIYPLP 100
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPWKI 92
HMY++KDLVPD++NF++QYK I+ PW I
Sbjct: 101 HMYIIKDLVPDLSNFFSQYKYIK-----PWLI 127
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 303 LSGLVKKDKPGLDT-AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
+ G + G++T A L I N + IYPLPHMY++KDLVPD++NF++QYK I+PWL
Sbjct: 67 ICGSCSMNIDGINTLACLKPIKTNANIITIYPLPHMYIIKDLVPDLSNFFSQYKYIKPWL 126
>sp|Q55CC2|DHSB_DICDI Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Dictyostelium discoideum GN=sdhB PE=3
SV=1
Length = 287
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 142/245 (57%), Gaps = 57/245 (23%)
Query: 116 AEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDL--------------------------- 148
AEK + F +YR+N ++ KP +Q Y ++L
Sbjct: 42 AEKKDHFVNFQVYRYN-EETTAKPYIQTYNINLKDCGPMVLDALLLIKNNIDPTLSFRRS 100
Query: 149 ---------------NNKIDANDKVS--------KIYPLPHMYVVKDLVPDMNNFYAQYK 185
+N + K++ K+YPLPHM+VV+DL+PD+++FY Q+K
Sbjct: 101 CREGICGSCAMNLNGSNTLACTKKITDCLSGDTVKVYPLPHMHVVRDLIPDLSHFYTQHK 160
Query: 186 SIQPWLQ--RDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWN---GEKYL 240
SI+PWL+ D + LQS ++R KLDGLYECILCACCSTSCPSYWW+ YL
Sbjct: 161 SIKPWLEPAVDVPRYNGKEILQSKENRHKLDGLYECILCACCSTSCPSYWWSEGGDGGYL 220
Query: 241 GPAVLMQAYRWIIDSRDEKTADRLNQL-KDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEI 299
GPAVL+QAYRWI DSRD DRL L +D VY+CHTIMNCT CPKGLNPG++IA I
Sbjct: 221 GPAVLLQAYRWIADSRDSIQKDRLAILSEDQMKVYKCHTIMNCTAVCPKGLNPGKSIANI 280
Query: 300 KKLLS 304
K LL+
Sbjct: 281 KYLLA 285
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 74/93 (79%), Gaps = 9/93 (9%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKID---ANDKVSKIY 57
MVLDAL+ IKN +DPTL+FRRSCREGICGSCAMN+ G NTLAC KI + D V K+Y
Sbjct: 79 MVLDALLLIKNNIDPTLSFRRSCREGICGSCAMNLNGSNTLACTKKITDCLSGDTV-KVY 137
Query: 58 PLPHMYVVKDLVPDMNNFYAQYKSIQRHLGGPW 90
PLPHM+VV+DL+PD+++FY Q+KSI+ PW
Sbjct: 138 PLPHMHVVRDLIPDLSHFYTQHKSIK-----PW 165
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 33/36 (91%)
Query: 330 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRSI 365
K+YPLPHM+VV+DL+PD+++FY Q+KSI+PWL ++
Sbjct: 135 KVYPLPHMHVVRDLIPDLSHFYTQHKSIKPWLEPAV 170
>sp|P07014|DHSB_ECOLI Succinate dehydrogenase iron-sulfur subunit OS=Escherichia coli
(strain K12) GN=sdhB PE=1 SV=1
Length = 238
Score = 194 bits (493), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 136/230 (59%), Gaps = 52/230 (22%)
Query: 125 FAIYRWNPDKPDEKPTMQEYKVD------------------------------------- 147
F+IYR+NPD D+ P MQ+Y ++
Sbjct: 5 FSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSD 63
Query: 148 ---LNNK--------IDANDKVSK---IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR 193
+N K I A ++ K I PLP + V++DLV DM FYAQY+ I+P+L
Sbjct: 64 GLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLN 123
Query: 194 DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWII 253
+ +N ++LQ + R+KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++I
Sbjct: 124 NGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLI 183
Query: 254 DSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLL 303
DSRD +T RL+ L D FSV+RCH+IMNC CPKGLNP RAI IK +L
Sbjct: 184 DSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSML 233
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 4/89 (4%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSK---IY 57
M+LDALI++K E DP+L+FRRSCREG+CGS +N+ G N LACI+ I A ++ K I
Sbjct: 34 MLLDALIQLK-EKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIR 92
Query: 58 PLPHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PLP + V++DLV DM FYAQY+ I+ +L
Sbjct: 93 PLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 26/122 (21%)
Query: 246 MQAYRWIID-SRDEKTADRLNQLK--DPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKL 302
MQ Y D RD D L QLK DP +R R+C +G+
Sbjct: 20 MQDYTLEADEGRDMMLLDALIQLKEKDPSLSFR--------RSCREGVCGS--------- 62
Query: 303 LSGLVKKDKPGLDTAALHKIDANDKVSK---IYPLPHMYVVKDLVPDMNNFYAQYKSIQP 359
GL K GL A + I A ++ K I PLP + V++DLV DM FYAQY+ I+P
Sbjct: 63 -DGLNMNGKNGL--ACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKP 119
Query: 360 WL 361
+L
Sbjct: 120 YL 121
>sp|Q8ZQU2|DHSB_SALTY Succinate dehydrogenase iron-sulfur subunit OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=sdhB PE=3 SV=2
Length = 238
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 109/143 (76%)
Query: 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECI 220
I PLP + V++DLV DM FYAQY+ I+P+L + +N ++LQ + R+KLDGLYECI
Sbjct: 91 IRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECI 150
Query: 221 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIM 280
LCACCSTSCPS+WWN +K++GPA L+ AYR++IDSRD +T RL + D FSV+RCH+IM
Sbjct: 151 LCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLEGMSDAFSVFRCHSIM 210
Query: 281 NCTRTCPKGLNPGRAIAEIKKLL 303
NC CPKGLNP RAI IK +L
Sbjct: 211 NCVSVCPKGLNPTRAIGHIKSML 233
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSK---IY 57
M+LDALI++K E DP+L+FRRSCREG+CGS +N+ G N LACI+ I A + K I
Sbjct: 34 MLLDALIQLK-EKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALTQPGKKIVIR 92
Query: 58 PLPHMYVVKDLVPDMNNFYAQYKSIQRHL 86
PLP + V++DLV DM FYAQY+ I+ +L
Sbjct: 93 PLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 25/113 (22%)
Query: 254 DSRDEKTADRLNQLK--DPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVKKDK 311
+ RD D L QLK DP +R R+C +G+ GL K
Sbjct: 29 EGRDMMLLDALIQLKEKDPSLSFR--------RSCREGVCGS----------DGLNMNGK 70
Query: 312 PGLDTAALHKIDANDKVSK---IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
GL A + I A + K I PLP + V++DLV DM FYAQY+ I+P+L
Sbjct: 71 NGL--ACITPISALTQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
>sp|P51053|DHSB_COXBU Succinate dehydrogenase iron-sulfur subunit OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=sdhB PE=3 SV=1
Length = 235
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 136/226 (60%), Gaps = 52/226 (23%)
Query: 124 TFAIYRWNPDKPDEKPTMQEYKVDLN--------NKIDA--------------------- 154
TF+I R+NP+ D+KP MQ++++D++ N ++A
Sbjct: 2 TFSIMRFNPET-DKKPYMQDFELDVSAIQGKMLLNALEALREKHPDIGLRRSCAEGVCGS 60
Query: 155 --------------------NDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRD 194
D+V + PLP +++DL+ DM FYAQYK ++P+L D
Sbjct: 61 DGMNINGKNALACVTQLKDLPDRVV-VRPLPGFPIIRDLIVDMEQFYAQYKKVKPYLLND 119
Query: 195 KENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIID 254
+E + LQS ++R KLDGLYECILCACCS+SCPSYWWN +K++GPA L+ +YR+I D
Sbjct: 120 QE-APQKERLQSPEERAKLDGLYECILCACCSSSCPSYWWNPDKFIGPAGLLWSYRFIAD 178
Query: 255 SRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIK 300
SRD K +RL+ +KDP+SV+RC TIM+C CPK LNP +AI +I+
Sbjct: 179 SRDSKEKERLDAMKDPYSVFRCRTIMDCATVCPKNLNPAKAIRKIR 224
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKI-DANDKVSKIYPL 59
M+L+AL ++ E P + RRSC EG+CGS MNI G N LAC++++ D D+V + PL
Sbjct: 32 MLLNALEALR-EKHPDIGLRRSCAEGVCGSDGMNINGKNALACVTQLKDLPDRVV-VRPL 89
Query: 60 PHMYVVKDLVPDMNNFYAQYKSIQRHL 86
P +++DL+ DM FYAQYK ++ +L
Sbjct: 90 PGFPIIRDLIVDMEQFYAQYKKVKPYL 116
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 323 DANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 361
D D+V + PLP +++DL+ DM FYAQYK ++P+L
Sbjct: 79 DLPDRVV-VRPLPGFPIIRDLIVDMEQFYAQYKKVKPYL 116
>sp|Q10761|FRDB_MYCTU Fumarate reductase iron-sulfur subunit OS=Mycobacterium
tuberculosis GN=frdB PE=3 SV=1
Length = 247
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYE 218
++ P+ + V++DLV D+++F A+ S++PWL R D+ + + +Y Q+ +
Sbjct: 89 RVEPMRNFPVIRDLVVDISDFMAKLPSVKPWLVRHDEPPVEDGEYRQTPAELDAFKQFSM 148
Query: 219 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHT 278
CI C C ++CP Y + + +LGPA + R+ +DSRD+ ADR + L + C
Sbjct: 149 CINCMLCYSACPVYALDPD-FLGPAAIALGQRYNLDSRDQGAADRRDVLAAADGAWACTL 207
Query: 279 IMNCTRTCPKGLNPGRAIAEIK 300
+ C+ CPKG++P AI K
Sbjct: 208 VGECSTACPKGVDPAGAIQRYK 229
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKI-DANDKVSKIYPLP 60
VLD L IK+ +D TL+FR SCR GICGS M I G LAC + + D ++ P+
Sbjct: 35 VLDGLTYIKDHLDGTLSFRWSCRMGICGSSGMTINGDPKLACATFLADYLPGPVRVEPMR 94
Query: 61 HMYVVKDLVPDMNNFYAQYKSIQRHLGGPWKI 92
+ V++DLV D+++F A+ S++ PW +
Sbjct: 95 NFPVIRDLVVDISDFMAKLPSVK-----PWLV 121
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 330 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363
++ P+ + V++DLV D+++F A+ S++PWL R
Sbjct: 89 RVEPMRNFPVIRDLVVDISDFMAKLPSVKPWLVR 122
>sp|P0AC50|FRDB_SHIFL Fumarate reductase iron-sulfur subunit OS=Shigella flexneri GN=frdB
PE=3 SV=2
Length = 244
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 219
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 149
Query: 220 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI 279
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+ C +
Sbjct: 150 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFV 208
Query: 280 MNCTRTCPKGLNPGRAIAEIK 300
C+ CPK ++P AI + K
Sbjct: 209 GYCSEVCPKHVDPAAAIQQGK 229
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPH 61
+LDAL IK+ + P L++R SCR ICGSC M + V LAC + + K+ L +
Sbjct: 37 LLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALAN 96
Query: 62 MYVVKDLVPDMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAK 121
+ +DLV DM +F ++I+ P+ I + TA + Q PA+ AK
Sbjct: 97 FPIERDLVVDMTHFIESLEAIK-----PYIIGNSRTADQGTNIQ--------TPAQM-AK 142
Query: 122 YKTFA 126
Y F+
Sbjct: 143 YHQFS 147
>sp|P0AC47|FRDB_ECOLI Fumarate reductase iron-sulfur subunit OS=Escherichia coli (strain
K12) GN=frdB PE=1 SV=2
Length = 244
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 219
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 149
Query: 220 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI 279
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+ C +
Sbjct: 150 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFV 208
Query: 280 MNCTRTCPKGLNPGRAIAEIK 300
C+ CPK ++P AI + K
Sbjct: 209 GYCSEVCPKHVDPAAAIQQGK 229
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPH 61
+LDAL IK+ + P L++R SCR ICGSC M + V LAC + + K+ L +
Sbjct: 37 LLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALAN 96
Query: 62 MYVVKDLVPDMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAK 121
+ +DLV DM +F ++I+ P+ I + TA + Q PA+ AK
Sbjct: 97 FPIERDLVVDMTHFIESLEAIK-----PYIIGNSRTADQGTNIQ--------TPAQM-AK 142
Query: 122 YKTFA 126
Y F+
Sbjct: 143 YHQFS 147
>sp|P0AC48|FRDB_ECOL6 Fumarate reductase iron-sulfur subunit OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=frdB PE=3 SV=2
Length = 244
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 219
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 149
Query: 220 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI 279
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+ C +
Sbjct: 150 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFV 208
Query: 280 MNCTRTCPKGLNPGRAIAEIK 300
C+ CPK ++P AI + K
Sbjct: 209 GYCSEVCPKHVDPAAAIQQGK 229
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPH 61
+LDAL IK+ + P L++R SCR ICGSC M + V LAC + + K+ L +
Sbjct: 37 LLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALAN 96
Query: 62 MYVVKDLVPDMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAK 121
+ +DLV DM +F ++I+ P+ I + TA + Q PA+ AK
Sbjct: 97 FPIERDLVVDMTHFIESLEAIK-----PYIIGNSRTADQGTNIQ--------TPAQM-AK 142
Query: 122 YKTFA 126
Y F+
Sbjct: 143 YHQFS 147
>sp|P0AC49|FRDB_ECO57 Fumarate reductase iron-sulfur subunit OS=Escherichia coli O157:H7
GN=frdB PE=3 SV=2
Length = 244
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 219
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 149
Query: 220 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI 279
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+ C +
Sbjct: 150 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFV 208
Query: 280 MNCTRTCPKGLNPGRAIAEIK 300
C+ CPK ++P AI + K
Sbjct: 209 GYCSEVCPKHVDPAAAIQQGK 229
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPH 61
+LDAL IK+ + P L++R SCR ICGSC M + V LAC + + K+ L +
Sbjct: 37 LLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALAN 96
Query: 62 MYVVKDLVPDMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAK 121
+ +DLV DM +F ++I+ P+ I + TA + Q PA+ AK
Sbjct: 97 FPIERDLVVDMTHFIESLEAIK-----PYIIGNSRTADQGTNIQ--------TPAQM-AK 142
Query: 122 YKTFA 126
Y F+
Sbjct: 143 YHQFS 147
>sp|P20921|FRDB_PROVU Fumarate reductase iron-sulfur subunit OS=Proteus vulgaris GN=frdB
PE=3 SV=2
Length = 245
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 219
+I L + V +DLV DM +F ++I+P++ + Q+ K C
Sbjct: 91 RIEALGNFPVERDLVVDMTHFIESLEAIKPYILGNDRKPSEGPNKQTPAQMAKYHQFSGC 150
Query: 220 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI 279
I C C +CP + N E ++GPA + A R+ DSRD +R+ QL V+ C +
Sbjct: 151 INCGLCYAACPQFGLNPE-FIGPAAITLAQRYNTDSRDHGAKERMPQLNGENGVWSCTFV 209
Query: 280 MNCTRTCPKGLNPGRAIAEIK 300
C+ CPK ++P AI + K
Sbjct: 210 GYCSEVCPKHVDPAAAIQQGK 230
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPH 61
+LDAL IK+ + P L++R SCR ICGSC M + V LAC + + +I L +
Sbjct: 38 LLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNRVPKLACKTFMRDYPNGVRIEALGN 97
Query: 62 MYVVKDLVPDMNNFYAQYKSIQRHLGG 88
V +DLV DM +F ++I+ ++ G
Sbjct: 98 FPVERDLVVDMTHFIESLEAIKPYILG 124
>sp|P44893|FRDB_HAEIN Fumarate reductase iron-sulfur subunit OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=frdB PE=3
SV=1
Length = 256
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDK-----------ENIGNAQYLQSLD 208
+I PL + + +DLV D+++F ++I+P++ ++ + + ++ Q+
Sbjct: 90 RIEPLANFPIERDLVVDLSHFIESLEAIKPYIIGNEAPALDGKPHPSKELQVSRTKQTPA 149
Query: 209 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 268
+K CI C C +CP + N E +LGPA + A+R+ +D+RD A R++ L
Sbjct: 150 QLEKYRQFSMCINCGLCYAACPQFGLNPE-FLGPAAITMAHRYNLDNRDHGKAKRMSLLN 208
Query: 269 DPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIK 300
V+ C + C+ CPK ++P AI + K
Sbjct: 209 GKNGVWSCTFVGYCSEVCPKHVDPASAINQGK 240
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPH 61
+LDAL IK++++P+L++R SCR ICGSC M + LAC + + +I PL +
Sbjct: 37 LLDALGYIKDKLEPSLSYRWSCRMAICGSCGMMVNNKPKLACKTFLRDYSGHMRIEPLAN 96
Query: 62 MYVVKDLVPDMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAK 121
+ +DLV D+++F ++I+ ++ G L K S +L + + PA+ K
Sbjct: 97 FPIERDLVVDLSHFIESLEAIKPYIIG--NEAPALDGKPHPSKELQVSRTKQTPAQL-EK 153
Query: 122 YKTFAI 127
Y+ F++
Sbjct: 154 YRQFSM 159
>sp|P17596|FRDB_WOLSU Fumarate reductase iron-sulfur subunit OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=frdB PE=1 SV=1
Length = 239
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Query: 153 DANDKVSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWLQRDKE-NIGNAQYLQSLDDR 210
D D V + PLP ++KDL D N F + ++ W+ KE +I + +
Sbjct: 83 DFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVA 142
Query: 211 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT-ADRLNQLKD 269
+++ L CI C CC +C + E ++G A L + R++ID DE+T D + D
Sbjct: 143 QEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGD 201
Query: 270 PFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKK 301
V+ C T++ C CPK L IA +++
Sbjct: 202 DDGVFGCMTLLACHDVCPKNLPLQSKIAYLRR 233
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 9 IKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKI-DANDKVSKIYPLPHMYVVKD 67
I+ DP L F CR GICGSC M I G +LAC + D D V + PLP ++KD
Sbjct: 43 IRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKD 102
Query: 68 LVPDMNNFY 76
L D N++
Sbjct: 103 LSVDTGNWF 111
>sp|Q9ZMP1|FRDB_HELPJ Fumarate reductase iron-sulfur subunit OS=Helicobacter pylori
(strain J99) GN=frdB PE=3 SV=1
Length = 245
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
Query: 158 VSKIYPLPHMYVVKDLVPDMNNFYAQY-KSIQPWLQRDKE-NIGNAQYLQSLDDRKKLDG 215
V + P+P ++KDL + ++++ K ++ W +E +I + D+ +++
Sbjct: 91 VITLMPMPSFTLIKDLSVNTGDWFSDMTKRVESWAHSKEEVDITKPEKRVEPDEAQEVFE 150
Query: 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL-KDPFSVY 274
L CI C CC SC + ++G A + +A R++IDS DE++ D +L D V+
Sbjct: 151 LDRCIECGCCIASCGTKLMR-PNFIGAAGMNRAMRFMIDSHDERSDDDFYELVGDDDGVF 209
Query: 275 RCHTIMNCTRTCPKGLNPGRAIAEIK 300
C +++ C TCPK L +IA ++
Sbjct: 210 GCMSLIACHDTCPKELPLQSSIATLR 235
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 5 ALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDA-NDKVSKIYPLPHMY 63
AL I+ DP L+F CR GICGSCAM + G LAC + + + V + P+P
Sbjct: 42 ALNLIREHQDPDLSFDFVCRAGICGSCAMMVNGRPRLACKTLTSSFENGVITLMPMPSFT 101
Query: 64 VVKDLVPDMNNFYA 77
++KDL + ++++
Sbjct: 102 LIKDLSVNTGDWFS 115
>sp|O06914|FRDB_HELPY Fumarate reductase iron-sulfur subunit OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=frdB PE=3 SV=2
Length = 245
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 158 VSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWLQRDKE-NIGNAQYLQSLDDRKKLDG 215
V + P+P ++KDL + + F K ++ W +E +I + D+ +++
Sbjct: 91 VITLMPMPSFTLIKDLSVNTGDWFLDMTKRVESWAHSKEEVDITRPEKRVEPDEAQEVFE 150
Query: 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL-KDPFSVY 274
L CI C CC SC + ++G A + +A R++IDS DE+ D +L D V+
Sbjct: 151 LDRCIECGCCIASCGTKLMR-PNFIGAAGMNRAMRFMIDSHDERNDDDFYELVGDDDGVF 209
Query: 275 RCHTIMNCTRTCPKGLNPGRAIAEIK 300
C +++ C TCPK L +IA ++
Sbjct: 210 GCMSLIACHDTCPKELPLQSSIATLR 235
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 5 ALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDK-VSKIYPLPHMY 63
AL I+ DP L+F CR GICGSCAM + G LAC + + + V + P+P
Sbjct: 42 ALNLIREHQDPDLSFDFVCRAGICGSCAMMVNGRPRLACKTLTSSFESGVITLMPMPSFT 101
Query: 64 VVKDLVPDMNNFY 76
++KDL + +++
Sbjct: 102 LIKDLSVNTGDWF 114
>sp|Q6LYC4|Y1067_METMP Uncharacterized iron-sulfur protein MMP1067 OS=Methanococcus
maripaludis (strain S2 / LL) GN=MMP1067 PE=3 SV=1
Length = 494
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQ------YLQSLDDRKKLD 214
I PL V+ DLV D +Y + +++ ++Q+ E I + Y L D KK+
Sbjct: 76 IEPLEGFDVISDLVVDREPYYKKIGTLRNYIQKKNEKISEKELDGLKLYPDDLKDVKKIR 135
Query: 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 274
G +C+ C CP+ ++ Y GP ++ Q R+ D +DE DR + D ++Y
Sbjct: 136 GCIDCLSCI---AMCPARKYSN--YPGPTLMRQLARFAFDPKDE--IDREKEAFDE-NIY 187
Query: 275 RCHTIMNCTRTCPKGLN 291
C T C CPK ++
Sbjct: 188 NCTTCGRCVEVCPKEID 204
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPH 61
+LDAL I + FR SC+ G CGSCA+ I + LAC +K++ N I PL
Sbjct: 25 ILDALEYINKTYGENIQFRSSCKAGQCGSCAVMINKKSKLACKTKVEDN---MIIEPLEG 81
Query: 62 MYVVKDLVPDMNNFYAQYKSIQRHL 86
V+ DLV D +Y + +++ ++
Sbjct: 82 FDVISDLVVDREPYYKKIGTLRNYI 106
>sp|Q57557|Y092_METJA Uncharacterized iron-sulfur protein MJ0092 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0092 PE=3 SV=1
Length = 489
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 16/147 (10%)
Query: 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR----DKENIGNAQYLQSLDDRKKLDGL 216
I PL V++DL+ D +Y + I+ +L R ++ I +Y++ + K+L G
Sbjct: 78 IEPLRGFKVIRDLIVDREPYYKKLLGIKNYLIRKNYPEELEILIPKYVE---ENKELRG- 133
Query: 217 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRC 276
CI C C + CP+ + Y GP + Q R+ D RDE + ++ +Y C
Sbjct: 134 --CIDCLSCLSVCPAREVSD--YPGPTFMRQLARFAFDKRDEDGREITAYFEN---IYNC 186
Query: 277 HTIMNCTRTCPKGLN-PGRAIAEIKKL 302
T C CPK ++ RAI +++ L
Sbjct: 187 TTCAKCVEVCPKEIDIVHRAIEKLRAL 213
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPH 61
VL+AL I + + FR SCR CGSCA+ I G LAC +K++ I PL
Sbjct: 27 VLEALEYINKHYEANILFRASCRNAQCGSCAVTINGEPRLACETKVEDG---MIIEPLRG 83
Query: 62 MYVVKDLVPDMNNFYAQYKSIQRHL 86
V++DL+ D +Y + I+ +L
Sbjct: 84 FKVIRDLIVDREPYYKKLLGIKNYL 108
>sp|P08066|DHSB_BACSU Succinate dehydrogenase iron-sulfur subunit OS=Bacillus subtilis
(strain 168) GN=sdhB PE=3 SV=3
Length = 253
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Query: 152 IDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE-NIGNAQYLQSLDDR 210
ID ++ ++ P+ VV+DL D + + K ++ W+ D ++G + R
Sbjct: 88 IDQLEQPIRLKPMKTFPVVRDLQVDRSRMFDSLKKVKAWIPIDGTYDLGPGPRMPE-KRR 146
Query: 211 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE-KTADRLNQLKD 269
+ L +C+ C C +CP+ + K++GPA + Q + ++RL L D
Sbjct: 147 QWAYELSKCMTCGVCLEACPNVN-SKSKFMGPAPMSQVRLFNAHPTGAMNKSERLEALMD 205
Query: 270 PFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKK 301
+ C NC ++CPKG+ +IA + +
Sbjct: 206 EGGLADCGNSQNCVQSCPKGIPLTTSIAALNR 237
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 7 IKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVK 66
+ +K E +T+ +C E +CG+C+M I G +C + ID ++ ++ P+ VV+
Sbjct: 48 VNVKGEKTTPVTWDMNCLEEVCGACSMVINGKPRQSCTALIDQLEQPIRLKPMKTFPVVR 107
Query: 67 DLVPDMNNFYAQYKSIQ 83
DL D + + K ++
Sbjct: 108 DLQVDRSRMFDSLKKVK 124
>sp|P52074|GLCF_ECOLI Glycolate oxidase iron-sulfur subunit OS=Escherichia coli (strain
K12) GN=glcF PE=4 SV=1
Length = 407
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYR 275
L C+ C C+ +CP+Y G++ GP + + +++ +E T LK + R
Sbjct: 22 LRACVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEG-NEVT------LKTQEHLDR 74
Query: 276 CHTIMNCTRTCPKG------LNPGRAIAEIK 300
C T NC TCP G L+ GR I E K
Sbjct: 75 CLTCRNCETTCPSGVRYHNLLDIGRDIVEQK 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,805,397
Number of Sequences: 539616
Number of extensions: 5739529
Number of successful extensions: 14963
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 14687
Number of HSP's gapped (non-prelim): 197
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)