Query psy5769
Match_columns 365
No_of_seqs 364 out of 2494
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:31:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0479 FrdB Succinate dehydro 100.0 6.8E-61 1.5E-65 446.8 15.8 200 1-306 31-230 (234)
2 PRK13552 frdB fumarate reducta 100.0 2.2E-58 4.7E-63 434.9 17.0 200 1-305 35-237 (239)
3 PLN00129 succinate dehydrogena 100.0 2.6E-58 5.5E-63 440.6 16.5 199 1-303 74-273 (276)
4 PRK12575 succinate dehydrogena 100.0 7.5E-58 1.6E-62 429.8 16.5 198 1-305 35-232 (235)
5 PRK08640 sdhB succinate dehydr 100.0 1.6E-56 3.5E-61 424.3 16.9 200 1-306 34-241 (249)
6 PRK12386 fumarate reductase ir 100.0 6E-54 1.3E-58 406.5 16.5 199 1-306 31-233 (251)
7 PRK12577 succinate dehydrogena 100.0 1.8E-52 3.9E-57 411.5 16.4 231 1-328 30-266 (329)
8 PRK12385 fumarate reductase ir 100.0 2E-52 4.4E-57 395.5 15.7 199 1-305 36-234 (244)
9 PRK05950 sdhB succinate dehydr 100.0 1.9E-50 4.2E-55 379.3 16.6 200 1-305 30-229 (232)
10 PRK12576 succinate dehydrogena 100.0 4.9E-50 1.1E-54 385.9 16.9 224 1-328 36-265 (279)
11 KOG3049|consensus 100.0 3.3E-50 7.1E-55 364.3 10.3 205 1-309 78-284 (288)
12 TIGR00384 dhsB succinate dehyd 100.0 1.6E-49 3.6E-54 370.2 15.1 194 1-300 26-220 (220)
13 PRK07570 succinate dehydrogena 100.0 8.9E-49 1.9E-53 371.3 14.8 193 1-305 32-242 (250)
14 PRK06259 succinate dehydrogena 100.0 1.4E-36 3E-41 312.7 15.7 208 1-330 32-240 (486)
15 PF13085 Fer2_3: 2Fe-2S iron-s 100.0 1.7E-32 3.8E-37 229.4 5.8 77 1-77 30-110 (110)
16 KOG3049|consensus 99.7 1E-17 2.2E-22 152.9 5.1 57 306-364 110-167 (288)
17 COG1150 HdrC Heterodisulfide r 99.5 5.7E-15 1.2E-19 133.9 5.2 99 215-326 37-136 (195)
18 TIGR03290 CoB_CoM_SS_C CoB--Co 99.5 5.8E-14 1.3E-18 122.9 5.5 96 217-327 2-97 (144)
19 PRK08493 NADH dehydrogenase su 99.4 2.3E-13 4.9E-18 147.8 7.6 51 1-52 18-69 (819)
20 PRK11274 glcF glycolate oxidas 99.4 2.2E-13 4.7E-18 137.5 7.0 96 203-305 9-104 (407)
21 COG0479 FrdB Succinate dehydro 99.4 2.4E-13 5.1E-18 127.7 4.7 68 272-363 49-119 (234)
22 TIGR00273 iron-sulfur cluster- 99.3 1.3E-12 2.9E-17 133.2 4.6 82 213-306 289-375 (432)
23 PF13085 Fer2_3: 2Fe-2S iron-s 99.3 7.7E-13 1.7E-17 111.0 1.8 59 124-182 1-110 (110)
24 COG1139 Uncharacterized conser 99.3 1E-12 2.2E-17 131.4 2.4 82 213-306 304-390 (459)
25 COG3383 Uncharacterized anaero 99.3 2E-13 4.4E-18 143.2 -3.1 51 1-52 22-73 (978)
26 PRK07569 bidirectional hydroge 99.3 4.3E-12 9.2E-17 119.7 4.7 50 1-51 20-72 (234)
27 PLN00129 succinate dehydrogena 99.2 2.7E-11 5.8E-16 116.8 7.3 56 306-363 106-162 (276)
28 TIGR01973 NuoG NADH-quinone ox 99.1 2.5E-11 5.4E-16 128.7 2.2 51 1-52 15-69 (603)
29 PTZ00305 NADH:ubiquinone oxido 99.1 2.5E-11 5.3E-16 116.9 1.8 51 1-52 86-139 (297)
30 PRK11168 glpC sn-glycerol-3-ph 99.1 1E-10 2.2E-15 117.5 6.0 80 215-305 5-85 (396)
31 PRK09129 NADH dehydrogenase su 99.0 2.9E-11 6.4E-16 131.6 -0.7 51 1-52 18-71 (776)
32 PRK13552 frdB fumarate reducta 99.0 2E-10 4.4E-15 108.8 4.5 56 306-363 67-124 (239)
33 COG0247 GlpC Fe-S oxidoreducta 99.0 2.2E-10 4.8E-15 114.1 4.9 85 214-306 6-90 (388)
34 COG1034 NuoG NADH dehydrogenas 99.0 8.5E-11 1.8E-15 125.3 1.8 50 1-51 18-70 (693)
35 PRK07860 NADH dehydrogenase su 99.0 5.4E-11 1.2E-15 130.0 -0.9 50 1-51 21-73 (797)
36 PRK09130 NADH dehydrogenase su 99.0 5.1E-11 1.1E-15 128.2 -1.4 51 1-52 18-72 (687)
37 TIGR03379 glycerol3P_GlpC glyc 98.9 6.4E-10 1.4E-14 112.0 5.1 80 215-305 3-83 (397)
38 PRK12385 fumarate reductase ir 98.9 2.2E-09 4.7E-14 102.1 6.7 34 54-87 89-122 (244)
39 PRK08166 NADH dehydrogenase su 98.9 2E-09 4.3E-14 118.5 6.1 51 1-52 18-76 (847)
40 PRK08640 sdhB succinate dehydr 98.9 1.5E-09 3.3E-14 103.5 4.4 56 306-364 73-129 (249)
41 PRK12575 succinate dehydrogena 98.9 2.1E-09 4.5E-14 101.7 4.6 56 306-364 66-122 (235)
42 PF13534 Fer4_17: 4Fe-4S diclu 98.8 3.8E-10 8.2E-15 84.2 -0.6 61 218-291 1-61 (61)
43 PF13183 Fer4_8: 4Fe-4S diclus 98.8 1E-09 2.2E-14 80.5 1.6 56 216-290 2-57 (57)
44 PRK12577 succinate dehydrogena 98.7 1.5E-08 3.2E-13 100.3 5.7 56 30-87 71-127 (329)
45 PRK15055 anaerobic sulfite red 98.7 5.5E-09 1.2E-13 103.7 2.5 91 215-306 224-339 (344)
46 PRK07570 succinate dehydrogena 98.7 2.4E-08 5.2E-13 95.3 5.9 56 306-363 68-132 (250)
47 PRK05950 sdhB succinate dehydr 98.7 3.1E-08 6.7E-13 93.4 6.3 47 30-87 71-117 (232)
48 TIGR00384 dhsB succinate dehyd 98.6 1.8E-08 4E-13 94.2 3.9 33 55-87 81-113 (220)
49 TIGR01945 rnfC electron transp 98.6 2.8E-08 6.1E-13 101.8 4.6 74 214-305 360-433 (435)
50 PF13510 Fer2_4: 2Fe-2S iron-s 98.5 5.4E-08 1.2E-12 77.5 3.1 51 1-52 20-76 (82)
51 TIGR02910 sulfite_red_A sulfit 98.5 1.1E-07 2.5E-12 94.0 5.7 88 216-304 219-331 (334)
52 PRK05352 Na(+)-translocating N 98.5 8.9E-08 1.9E-12 98.4 4.7 73 215-305 372-446 (448)
53 PRK05035 electron transport co 98.4 1.5E-07 3.1E-12 101.5 3.9 73 215-305 368-440 (695)
54 TIGR01936 nqrA NADH:ubiquinone 98.4 3.2E-07 6.9E-12 94.3 4.8 72 215-304 371-444 (447)
55 PRK00941 acetyl-CoA decarbonyl 98.3 3.6E-07 7.9E-12 98.5 4.4 77 211-306 398-474 (781)
56 PRK12386 fumarate reductase ir 98.3 3.2E-07 6.9E-12 87.7 3.3 56 307-363 64-120 (251)
57 cd01916 ACS_1 Acetyl-CoA synth 98.3 5.3E-07 1.1E-11 97.1 3.9 78 211-307 359-436 (731)
58 TIGR00314 cdhA CO dehydrogenas 98.2 7.8E-07 1.7E-11 95.9 3.8 75 211-304 393-467 (784)
59 COG4656 RnfC Predicted NADH:ub 98.2 7.9E-07 1.7E-11 91.5 3.4 71 218-306 366-436 (529)
60 TIGR03193 4hydroxCoAred 4-hydr 98.2 1.5E-06 3.2E-11 76.7 4.2 56 1-60 20-77 (148)
61 PRK12814 putative NADPH-depend 98.1 4.2E-06 9.2E-11 89.9 7.3 50 1-51 20-72 (652)
62 PRK12576 succinate dehydrogena 98.1 2.1E-06 4.5E-11 83.3 3.7 56 309-364 71-128 (279)
63 PF13187 Fer4_9: 4Fe-4S diclus 98.0 3.7E-07 8E-12 66.4 -2.6 53 218-289 1-53 (55)
64 TIGR02484 CitB CitB domain pro 98.0 5.9E-06 1.3E-10 82.6 4.7 70 214-306 11-86 (372)
65 PF13746 Fer4_18: 4Fe-4S diclu 98.0 8.7E-07 1.9E-11 68.4 -1.5 26 267-292 43-68 (69)
66 cd00207 fer2 2Fe-2S iron-sulfu 97.9 1.3E-05 2.8E-10 62.7 3.5 45 1-51 19-81 (84)
67 PF12838 Fer4_7: 4Fe-4S diclus 97.8 1.5E-06 3.2E-11 62.9 -2.5 52 218-290 1-52 (52)
68 PF13237 Fer4_10: 4Fe-4S diclu 97.8 1.8E-06 3.9E-11 62.3 -2.1 49 214-287 4-52 (52)
69 PRK15033 tricarballylate utili 97.8 1.9E-05 4.1E-10 79.4 3.9 72 212-306 28-105 (389)
70 PRK11433 aldehyde oxidoreducta 97.7 3.8E-05 8.2E-10 71.7 4.3 56 1-60 70-127 (217)
71 PRK13984 putative oxidoreducta 97.6 5.5E-05 1.2E-09 80.4 5.2 32 272-303 183-214 (604)
72 COG1152 CdhA CO dehydrogenase/ 97.6 4.1E-05 8.9E-10 79.6 3.3 73 213-304 396-468 (772)
73 COG1143 NuoI Formate hydrogenl 97.5 1.8E-05 3.9E-10 71.6 -0.2 57 216-289 54-110 (172)
74 PF14697 Fer4_21: 4Fe-4S diclu 97.4 6.3E-05 1.4E-09 56.3 1.5 49 216-288 5-53 (59)
75 PRK09908 xanthine dehydrogenas 97.4 0.00015 3.3E-09 64.8 3.8 55 1-60 27-83 (159)
76 PF00111 Fer2: 2Fe-2S iron-sul 97.4 0.00016 3.5E-09 56.0 3.6 30 2-36 19-48 (78)
77 TIGR00403 ndhI NADH-plastoquin 97.3 6.8E-05 1.5E-09 68.5 1.0 59 214-289 59-117 (183)
78 PRK05888 NADH dehydrogenase su 97.3 4.5E-05 9.7E-10 68.2 -1.0 58 215-290 56-113 (164)
79 TIGR03198 pucE xanthine dehydr 97.3 0.00021 4.5E-09 63.5 3.1 43 18-60 35-79 (151)
80 PRK14028 pyruvate ferredoxin o 97.2 7.3E-05 1.6E-09 73.4 0.2 62 213-289 243-304 (312)
81 TIGR02176 pyruv_ox_red pyruvat 97.2 7.7E-05 1.7E-09 85.0 -0.8 73 214-289 680-754 (1165)
82 PRK02651 photosystem I subunit 97.1 0.00016 3.4E-09 56.8 1.0 56 215-290 7-62 (81)
83 CHL00014 ndhI NADH dehydrogena 97.1 9.9E-05 2.2E-09 66.3 -0.2 58 215-289 57-114 (167)
84 TIGR01971 NuoI NADH-quinone ox 97.1 5.8E-05 1.2E-09 63.9 -1.9 57 216-290 42-98 (122)
85 PF13484 Fer4_16: 4Fe-4S doubl 97.1 6.2E-05 1.3E-09 56.9 -1.6 65 218-289 1-67 (67)
86 CHL00065 psaC photosystem I su 97.1 0.00015 3.2E-09 57.2 0.3 56 215-290 7-62 (81)
87 TIGR02008 fdx_plant ferredoxin 97.1 0.00048 1E-08 56.4 3.2 43 1-49 24-84 (97)
88 COG2080 CoxS Aerobic-type carb 97.1 0.00042 9E-09 61.6 3.0 55 2-60 23-79 (156)
89 PRK08348 NADH-plastoquinone ox 97.0 0.00013 2.8E-09 61.9 -0.4 51 214-290 39-89 (120)
90 COG1453 Predicted oxidoreducta 97.0 0.0013 2.8E-08 65.8 6.5 79 218-305 294-382 (391)
91 CHL00134 petF ferredoxin; Vali 97.0 0.00059 1.3E-08 56.2 3.4 44 1-50 26-87 (99)
92 PRK08318 dihydropyrimidine deh 97.0 0.00015 3.2E-09 74.0 -0.3 101 165-288 288-391 (420)
93 TIGR03048 PS_I_psaC photosyste 97.0 0.00022 4.9E-09 56.0 0.4 56 215-290 6-61 (80)
94 PRK08222 hydrogenase 4 subunit 97.0 0.00015 3.2E-09 66.2 -0.8 51 215-289 36-88 (181)
95 PRK12778 putative bifunctional 96.9 0.00039 8.4E-09 76.0 1.8 53 16-79 210-263 (752)
96 PLN00071 photosystem I subunit 96.9 0.00028 6.1E-09 55.5 0.5 55 216-290 8-62 (81)
97 PRK06273 ferredoxin; Provision 96.9 0.0002 4.4E-09 64.4 -0.6 60 215-289 47-106 (165)
98 PRK10713 2Fe-2S ferredoxin Yfa 96.9 0.00076 1.7E-08 53.8 2.7 32 1-38 21-53 (84)
99 KOG3256|consensus 96.8 0.00014 2.9E-09 65.0 -2.2 59 214-290 108-166 (212)
100 COG1145 NapF Ferredoxin [Energ 96.7 0.00047 1E-08 55.1 0.4 53 215-290 27-79 (99)
101 PRK09477 napH quinol dehydroge 96.7 0.00061 1.3E-08 65.8 1.2 53 214-289 205-257 (271)
102 COG0633 Fdx Ferredoxin [Energy 96.7 0.0015 3.3E-08 54.1 3.4 45 1-51 24-91 (102)
103 PRK09626 oorD 2-oxoglutarate-a 96.7 0.00028 6E-09 58.3 -1.1 56 214-289 13-68 (103)
104 TIGR02936 fdxN_nitrog ferredox 96.7 0.00038 8.1E-09 55.7 -0.4 20 214-233 18-37 (91)
105 PRK12775 putative trifunctiona 96.6 0.0021 4.6E-08 72.6 5.1 54 16-80 210-264 (1006)
106 PRK12387 formate hydrogenlyase 96.6 0.00033 7.2E-09 63.6 -1.1 53 215-289 36-88 (180)
107 PRK09625 porD pyruvate flavodo 96.6 0.00033 7.1E-09 60.8 -1.6 50 214-290 56-105 (133)
108 PRK09326 F420H2 dehydrogenase 96.5 0.0006 1.3E-08 67.9 -0.1 60 213-288 8-67 (341)
109 TIGR02163 napH_ ferredoxin-typ 96.5 0.00073 1.6E-08 64.7 0.1 51 216-290 200-250 (255)
110 PRK06991 ferredoxin; Provision 96.5 0.00057 1.2E-08 66.1 -0.6 48 215-289 83-130 (270)
111 TIGR02494 PFLE_PFLC glycyl-rad 96.5 0.00066 1.4E-08 65.7 -0.3 65 214-301 45-117 (295)
112 PLN02593 adrenodoxin-like ferr 96.4 0.003 6.6E-08 53.6 3.4 45 1-51 22-93 (117)
113 PRK05113 electron transport co 96.4 0.00072 1.6E-08 62.2 -0.6 49 215-290 112-160 (191)
114 COG1149 MinD superfamily P-loo 96.3 0.0018 4E-08 62.4 2.0 47 216-289 68-114 (284)
115 TIGR02007 fdx_isc ferredoxin, 96.3 0.0029 6.3E-08 53.0 2.9 29 1-35 25-54 (110)
116 TIGR01660 narH nitrate reducta 96.3 0.00043 9.2E-09 71.0 -2.5 21 214-234 178-200 (492)
117 PRK09624 porD pyuvate ferredox 96.3 0.00077 1.7E-08 56.1 -0.8 48 215-289 49-96 (105)
118 PRK09800 putative hypoxanthine 96.2 0.0032 7E-08 70.7 3.3 56 1-61 21-79 (956)
119 PRK10194 ferredoxin-type prote 96.2 0.00083 1.8E-08 59.9 -1.1 51 215-290 32-82 (163)
120 TIGR00402 napF ferredoxin-type 96.2 0.0015 3.2E-08 53.9 0.3 51 215-290 32-82 (101)
121 TIGR02512 Fe_only_hydrog hydro 96.2 0.001 2.3E-08 67.0 -0.7 63 215-291 5-67 (374)
122 PTZ00038 ferredoxin; Provision 96.2 0.0044 9.6E-08 57.0 3.4 44 1-50 116-177 (191)
123 PLN03136 Ferredoxin; Provision 96.2 0.0047 1E-07 54.7 3.5 43 1-49 75-135 (148)
124 TIGR03313 Se_sel_red_Mo probab 96.1 0.004 8.7E-08 69.9 3.4 56 1-61 17-75 (951)
125 PRK08764 ferredoxin; Provision 96.1 0.0017 3.6E-08 56.4 0.3 47 217-290 85-131 (135)
126 TIGR02179 PorD_KorD 2-oxoacid: 96.1 0.0013 2.9E-08 51.1 -0.4 50 214-290 22-71 (78)
127 COG1146 Ferredoxin [Energy pro 96.1 0.0022 4.8E-08 48.9 0.8 50 216-289 7-56 (68)
128 TIGR01944 rnfB electron transp 96.1 0.0011 2.4E-08 59.5 -1.1 50 214-290 110-159 (165)
129 COG2768 Uncharacterized Fe-S c 96.0 0.0051 1.1E-07 60.1 3.3 80 216-324 192-278 (354)
130 PF12797 Fer4_2: 4Fe-4S bindin 96.0 0.0019 4.1E-08 38.9 0.1 19 213-231 4-22 (22)
131 PRK09623 vorD 2-ketoisovalerat 95.8 0.0018 3.9E-08 53.8 -0.6 49 214-289 48-96 (105)
132 TIGR02912 sulfite_red_C sulfit 95.7 0.0019 4.2E-08 63.5 -1.2 51 215-290 167-217 (314)
133 PRK09898 hypothetical protein; 95.7 0.0041 9E-08 57.7 1.0 18 273-290 180-197 (208)
134 TIGR03311 Se_dep_Molyb_1 selen 95.6 0.0099 2.1E-07 66.1 4.0 57 1-61 17-75 (848)
135 PRK05713 hypothetical protein; 95.6 0.0099 2.2E-07 58.2 3.4 44 1-50 18-79 (312)
136 PF12798 Fer4_3: 4Fe-4S bindin 95.6 0.0034 7.3E-08 34.4 -0.0 15 276-290 1-15 (15)
137 TIGR00276 iron-sulfur cluster 95.6 0.0082 1.8E-07 58.5 2.6 68 216-291 158-226 (282)
138 TIGR02745 ccoG_rdxA_fixG cytoc 95.5 0.0039 8.4E-08 64.2 0.3 40 216-288 230-269 (434)
139 PRK07609 CDP-6-deoxy-delta-3,4 95.5 0.01 2.2E-07 58.5 3.2 44 1-50 21-84 (339)
140 TIGR03224 benzo_boxA benzoyl-C 95.4 0.0045 9.7E-08 63.3 0.2 48 214-289 7-54 (411)
141 PRK11872 antC anthranilate dio 95.3 0.012 2.6E-07 58.4 3.1 44 1-50 24-87 (340)
142 PF12800 Fer4_4: 4Fe-4S bindin 95.3 0.0078 1.7E-07 34.0 0.9 15 217-231 2-16 (17)
143 PRK06259 succinate dehydrogena 95.3 0.024 5.2E-07 59.0 5.2 28 58-86 86-113 (486)
144 TIGR00397 mauM_napG MauM/NapG 95.1 0.0039 8.6E-08 58.3 -1.0 19 216-234 52-70 (213)
145 TIGR02700 flavo_MJ0208 archaeo 95.1 0.0042 9.1E-08 58.7 -1.0 47 215-289 146-192 (234)
146 COG1144 Pyruvate:ferredoxin ox 95.1 0.0072 1.6E-07 48.9 0.4 49 214-288 32-80 (91)
147 COG0437 HybA Fe-S-cluster-cont 95.1 0.0093 2E-07 55.4 1.2 57 215-301 98-163 (203)
148 PRK10684 HCP oxidoreductase, N 95.1 0.016 3.6E-07 57.1 3.0 34 1-40 267-301 (332)
149 TIGR03478 DMSO_red_II_bet DMSO 95.0 0.0064 1.4E-07 60.0 0.1 22 213-234 125-148 (321)
150 PF12837 Fer4_6: 4Fe-4S bindin 95.0 0.0056 1.2E-07 37.7 -0.4 18 215-232 5-22 (24)
151 TIGR02963 xanthine_xdhA xanthi 94.9 0.023 4.9E-07 59.2 3.7 57 1-61 20-87 (467)
152 TIGR03149 cyt_nit_nrfC cytochr 94.8 0.013 2.8E-07 55.2 1.5 18 273-290 151-178 (225)
153 PRK13795 hypothetical protein; 94.6 0.0055 1.2E-07 66.1 -1.8 50 214-289 578-627 (636)
154 PF12800 Fer4_4: 4Fe-4S bindin 94.6 0.016 3.5E-07 32.7 1.0 16 274-289 2-17 (17)
155 PRK10882 hydrogenase 2 protein 94.6 0.019 4.2E-07 57.1 2.1 35 272-306 170-221 (328)
156 TIGR02060 aprB adenosine phosp 94.6 0.007 1.5E-07 52.6 -0.9 51 215-290 6-61 (132)
157 COG1148 HdrA Heterodisulfide r 94.5 0.014 3.1E-07 60.5 1.1 46 215-291 559-604 (622)
158 PRK10194 ferredoxin-type prote 94.5 0.011 2.3E-07 52.7 0.2 18 216-233 65-82 (163)
159 TIGR02486 RDH reductive dehalo 94.5 0.014 3E-07 57.8 0.9 27 278-304 268-294 (314)
160 PRK10882 hydrogenase 2 protein 94.5 0.011 2.4E-07 58.8 0.1 51 215-291 108-160 (328)
161 TIGR03478 DMSO_red_II_bet DMSO 94.5 0.011 2.3E-07 58.4 0.1 47 214-290 159-214 (321)
162 PF12837 Fer4_6: 4Fe-4S bindin 94.4 0.0088 1.9E-07 36.8 -0.4 18 273-290 6-23 (24)
163 TIGR03336 IOR_alpha indolepyru 94.4 0.016 3.4E-07 62.0 1.1 45 214-289 547-593 (595)
164 PF00037 Fer4: 4Fe-4S binding 94.3 0.011 2.5E-07 36.1 -0.1 19 215-233 4-22 (24)
165 TIGR03149 cyt_nit_nrfC cytochr 94.3 0.01 2.2E-07 55.9 -0.5 51 215-291 90-142 (225)
166 TIGR02160 PA_CoA_Oxy5 phenylac 94.3 0.034 7.3E-07 55.2 3.1 34 1-40 284-318 (352)
167 PF12798 Fer4_3: 4Fe-4S bindin 94.2 0.011 2.4E-07 32.3 -0.3 14 219-232 1-14 (15)
168 TIGR01582 FDH-beta formate deh 94.2 0.03 6.6E-07 54.6 2.5 33 273-305 150-195 (283)
169 PRK05464 Na(+)-translocating N 94.1 0.039 8.4E-07 56.2 3.1 45 1-51 55-120 (409)
170 PRK14993 tetrathionate reducta 94.1 0.015 3.3E-07 55.4 0.2 20 272-291 155-183 (244)
171 TIGR03287 methan_mark_16 putat 94.0 0.018 3.9E-07 58.5 0.5 45 214-289 299-345 (391)
172 TIGR01941 nqrF NADH:ubiquinone 94.0 0.041 8.9E-07 56.0 3.0 45 1-51 51-116 (405)
173 PF00037 Fer4: 4Fe-4S binding 93.8 0.017 3.8E-07 35.3 0.0 18 273-290 5-22 (24)
174 TIGR01582 FDH-beta formate deh 93.7 0.014 3.1E-07 56.8 -0.8 51 215-292 89-142 (283)
175 PTZ00490 Ferredoxin superfamil 93.6 0.069 1.5E-06 47.1 3.3 47 1-52 57-129 (143)
176 TIGR00397 mauM_napG MauM/NapG 93.5 0.025 5.4E-07 52.9 0.5 17 273-289 174-190 (213)
177 PRK09476 napG quinol dehydroge 93.4 0.019 4.1E-07 55.2 -0.6 18 216-233 58-75 (254)
178 COG4231 Indolepyruvate ferredo 93.3 0.024 5.1E-07 60.3 0.0 49 214-290 574-624 (640)
179 TIGR01660 narH nitrate reducta 93.2 0.026 5.7E-07 58.2 0.2 48 214-291 211-267 (492)
180 PRK09853 putative selenate red 93.2 0.029 6.2E-07 63.4 0.4 58 215-293 884-945 (1019)
181 PF13247 Fer4_11: 4Fe-4S diclu 93.1 0.014 2.9E-07 48.2 -1.7 47 214-290 37-92 (98)
182 PRK07118 ferredoxin; Validated 93.0 0.015 3.2E-07 56.7 -1.9 47 217-291 139-185 (280)
183 PRK09898 hypothetical protein; 92.9 0.028 6.1E-07 52.1 -0.1 51 215-291 119-171 (208)
184 TIGR02951 DMSO_dmsB DMSO reduc 92.9 0.037 7.9E-07 49.1 0.7 17 216-232 94-110 (161)
185 PRK12809 putative oxidoreducta 92.7 0.093 2E-06 56.6 3.4 30 272-301 206-238 (639)
186 PRK07118 ferredoxin; Validated 92.5 0.024 5.2E-07 55.2 -1.3 47 216-290 212-258 (280)
187 cd07030 RNAP_D D subunit of Ar 92.3 0.026 5.7E-07 54.0 -1.2 45 217-288 169-213 (259)
188 TIGR03315 Se_ygfK putative sel 92.3 0.054 1.2E-06 61.3 1.1 17 275-291 922-938 (1012)
189 TIGR03294 FrhG coenzyme F420 h 92.2 0.018 3.8E-07 54.4 -2.5 51 214-292 171-221 (228)
190 PRK09476 napG quinol dehydroge 92.1 0.033 7.1E-07 53.5 -0.8 16 274-289 184-199 (254)
191 PRK12771 putative glutamate sy 91.9 0.03 6.5E-07 59.3 -1.4 17 273-289 540-556 (564)
192 TIGR02969 mam_aldehyde_ox alde 91.9 0.12 2.7E-06 60.2 3.4 57 1-61 22-90 (1330)
193 PF12797 Fer4_2: 4Fe-4S bindin 91.9 0.049 1.1E-06 32.9 0.1 17 272-288 6-22 (22)
194 PRK12769 putative oxidoreducta 91.8 0.021 4.5E-07 61.6 -2.8 20 214-233 7-26 (654)
195 PRK10330 formate dehydrogenase 91.8 0.021 4.4E-07 51.7 -2.5 20 214-233 7-26 (181)
196 PRK10330 formate dehydrogenase 91.7 0.043 9.2E-07 49.7 -0.6 20 215-234 85-104 (181)
197 TIGR02951 DMSO_dmsB DMSO reduc 91.6 0.04 8.7E-07 48.9 -0.8 50 215-290 60-111 (161)
198 COG1142 HycB Fe-S-cluster-cont 91.5 0.056 1.2E-06 48.7 0.1 21 215-235 80-100 (165)
199 PRK12769 putative oxidoreducta 91.5 0.24 5.1E-06 53.5 4.8 30 272-301 223-255 (654)
200 COG2878 Predicted NADH:ubiquin 91.4 0.075 1.6E-06 48.5 0.7 52 213-291 111-162 (198)
201 PF13746 Fer4_18: 4Fe-4S diclu 90.5 0.1 2.2E-06 40.2 0.6 19 215-233 48-66 (69)
202 PRK00783 DNA-directed RNA poly 90.5 0.045 9.8E-07 52.6 -1.6 47 216-289 168-214 (263)
203 PLN02906 xanthine dehydrogenas 90.5 0.2 4.3E-06 58.5 3.3 56 1-61 3-70 (1319)
204 COG1148 HdrA Heterodisulfide r 90.4 0.061 1.3E-06 56.0 -0.9 63 212-288 220-285 (622)
205 PLN00192 aldehyde oxidase 90.1 0.24 5.3E-06 57.9 3.5 57 1-61 25-93 (1344)
206 PRK13984 putative oxidoreducta 90.0 0.19 4.2E-06 53.5 2.5 20 214-233 182-201 (604)
207 PRK12387 formate hydrogenlyase 89.9 0.29 6.3E-06 44.3 3.2 20 215-234 71-90 (180)
208 PRK14993 tetrathionate reducta 89.7 0.072 1.6E-06 50.9 -1.0 49 216-291 97-147 (244)
209 PF13237 Fer4_10: 4Fe-4S diclu 89.5 0.093 2E-06 37.4 -0.3 16 215-230 37-52 (52)
210 PF13187 Fer4_9: 4Fe-4S diclus 89.5 0.12 2.6E-06 37.1 0.3 19 215-233 36-54 (55)
211 COG2221 DsrA Dissimilatory sul 89.3 0.081 1.8E-06 52.2 -1.0 48 215-290 170-217 (317)
212 PF10418 DHODB_Fe-S_bind: Iron 89.3 0.3 6.5E-06 33.7 2.1 25 20-44 3-29 (40)
213 PRK12809 putative oxidoreducta 89.1 0.16 3.5E-06 54.7 1.0 19 215-233 83-101 (639)
214 PF13247 Fer4_11: 4Fe-4S diclu 89.0 0.033 7.1E-07 45.9 -3.3 50 216-291 6-57 (98)
215 COG1150 HdrC Heterodisulfide r 88.4 0.33 7.2E-06 44.8 2.4 32 273-304 38-73 (195)
216 PRK05352 Na(+)-translocating N 88.3 0.3 6.5E-06 50.7 2.4 31 272-302 372-402 (448)
217 COG1941 FrhG Coenzyme F420-red 88.3 0.12 2.5E-06 49.1 -0.6 57 212-299 185-241 (247)
218 TIGR02745 ccoG_rdxA_fixG cytoc 88.2 0.047 1E-06 56.4 -3.6 20 273-292 230-249 (434)
219 TIGR02066 dsrB sulfite reducta 87.7 0.16 3.5E-06 50.8 -0.1 49 217-289 181-229 (341)
220 COG1142 HycB Fe-S-cluster-cont 87.6 0.13 2.9E-06 46.3 -0.6 19 273-291 81-99 (165)
221 TIGR01936 nqrA NADH:ubiquinone 87.5 0.31 6.7E-06 50.6 1.9 31 271-301 370-400 (447)
222 COG1600 Uncharacterized Fe-S p 87.4 0.27 5.9E-06 49.2 1.4 65 217-289 185-249 (337)
223 COG0437 HybA Fe-S-cluster-cont 87.3 0.24 5.1E-06 46.2 0.8 54 214-293 64-119 (203)
224 PF14697 Fer4_21: 4Fe-4S diclu 86.9 0.29 6.3E-06 36.4 1.0 16 216-231 38-53 (59)
225 TIGR02163 napH_ ferredoxin-typ 86.1 0.15 3.3E-06 48.8 -1.2 51 218-290 167-217 (255)
226 PRK08345 cytochrome-c3 hydroge 86.0 0.3 6.4E-06 47.4 0.8 32 12-43 240-271 (289)
227 COG1143 NuoI Formate hydrogenl 86.0 0.27 5.8E-06 44.7 0.4 20 215-234 93-112 (172)
228 PF12838 Fer4_7: 4Fe-4S diclus 85.2 0.28 6E-06 35.0 0.1 18 215-232 34-51 (52)
229 KOG3256|consensus 84.6 0.32 6.9E-06 43.8 0.2 21 214-234 147-167 (212)
230 PRK08222 hydrogenase 4 subunit 84.4 0.45 9.9E-06 43.3 1.1 19 216-234 72-90 (181)
231 TIGR03290 CoB_CoM_SS_C CoB--Co 84.3 0.88 1.9E-05 39.6 2.9 30 215-251 44-73 (144)
232 COG3383 Uncharacterized anaero 83.6 0.46 1E-05 51.9 1.0 27 215-241 190-216 (978)
233 PF13534 Fer4_17: 4Fe-4S diclu 83.6 0.31 6.7E-06 35.7 -0.2 19 214-232 41-59 (61)
234 PLN00071 photosystem I subunit 83.0 0.37 8.1E-06 37.6 -0.0 27 216-242 45-71 (81)
235 PRK06222 ferredoxin-NADP(+) re 82.7 0.76 1.7E-05 44.3 2.0 35 16-50 210-245 (281)
236 PF13183 Fer4_8: 4Fe-4S diclus 82.5 0.35 7.7E-06 34.8 -0.3 16 217-232 41-56 (57)
237 PF13484 Fer4_16: 4Fe-4S doubl 82.2 0.31 6.6E-06 36.5 -0.7 16 275-290 1-16 (67)
238 COG4656 RnfC Predicted NADH:ub 82.2 1 2.2E-05 47.3 2.8 22 212-233 399-420 (529)
239 PRK09477 napH quinol dehydroge 82.2 0.58 1.3E-05 45.2 1.0 20 272-291 206-225 (271)
240 COG3894 Uncharacterized metal- 81.0 1.2 2.7E-05 46.6 2.9 52 1-59 19-89 (614)
241 PRK15055 anaerobic sulfite red 80.9 1.4 3E-05 44.3 3.1 30 215-251 305-334 (344)
242 PRK02651 photosystem I subunit 80.6 0.42 9.1E-06 37.2 -0.5 27 217-243 46-72 (81)
243 PRK13030 2-oxoacid ferredoxin 79.6 0.65 1.4E-05 53.4 0.4 54 214-293 626-682 (1159)
244 TIGR02910 sulfite_red_A sulfit 78.3 1.7 3.8E-05 43.4 2.9 19 215-233 299-317 (334)
245 COG1146 Ferredoxin [Energy pro 78.0 0.79 1.7E-05 34.7 0.3 20 214-233 38-57 (68)
246 CHL00065 psaC photosystem I su 77.8 0.58 1.3E-05 36.6 -0.5 26 217-242 46-71 (81)
247 COG1035 FrhB Coenzyme F420-red 77.4 0.86 1.9E-05 45.5 0.5 46 216-289 4-49 (332)
248 TIGR01318 gltD_gamma_fam gluta 77.2 1.6 3.4E-05 45.3 2.4 23 211-233 34-58 (467)
249 PRK09193 indolepyruvate ferred 77.0 0.83 1.8E-05 52.5 0.3 54 214-293 640-696 (1165)
250 COG1152 CdhA CO dehydrogenase/ 76.3 1.4 2.9E-05 47.0 1.6 29 272-300 398-426 (772)
251 PRK13029 2-oxoacid ferredoxin 76.3 0.9 2E-05 52.3 0.3 53 214-292 654-709 (1186)
252 PRK05035 electron transport co 75.8 1.2 2.7E-05 48.6 1.2 29 272-300 368-396 (695)
253 TIGR03048 PS_I_psaC photosyste 75.7 0.76 1.6E-05 35.8 -0.4 26 217-242 45-70 (80)
254 PRK12810 gltD glutamate syntha 75.4 1.5 3.3E-05 45.4 1.6 23 211-233 38-62 (471)
255 TIGR02936 fdxN_nitrog ferredox 74.5 0.92 2E-05 35.9 -0.2 19 215-233 68-86 (91)
256 TIGR00403 ndhI NADH-plastoquin 74.3 1.2 2.6E-05 40.7 0.5 20 215-234 100-119 (183)
257 COG1145 NapF Ferredoxin [Energ 74.2 1 2.3E-05 35.5 0.1 17 273-289 28-44 (99)
258 PRK15449 ferredoxin-like prote 73.3 1.5 3.2E-05 36.1 0.7 20 214-233 58-77 (95)
259 PRK09626 oorD 2-oxoglutarate-a 72.9 1.2 2.6E-05 36.6 0.1 18 273-290 15-32 (103)
260 PF14691 Fer4_20: Dihydroprymi 72.6 1.8 4E-05 36.4 1.2 80 213-305 18-104 (111)
261 PRK08348 NADH-plastoquinone ox 72.2 1.3 2.8E-05 37.3 0.2 18 273-290 41-58 (120)
262 TIGR01945 rnfC electron transp 71.9 2.2 4.7E-05 44.1 1.8 26 271-296 360-385 (435)
263 PF14691 Fer4_20: Dihydroprymi 71.8 2 4.3E-05 36.2 1.2 30 272-301 20-51 (111)
264 PF13370 Fer4_13: 4Fe-4S singl 70.7 1.2 2.5E-05 33.0 -0.4 18 216-233 3-20 (58)
265 CHL00014 ndhI NADH dehydrogena 70.0 1.7 3.6E-05 39.0 0.4 20 215-234 97-116 (167)
266 PRK05888 NADH dehydrogenase su 69.8 1.9 4.1E-05 38.4 0.7 18 272-289 56-73 (164)
267 COG1453 Predicted oxidoreducta 69.7 2.8 6.2E-05 42.4 2.0 26 275-301 294-319 (391)
268 PRK11274 glcF glycolate oxidas 69.2 3.7 8.1E-05 41.5 2.8 18 215-232 71-88 (407)
269 COG1141 Fer Ferredoxin [Energy 68.5 2 4.2E-05 33.2 0.4 18 216-233 7-24 (68)
270 PF13459 Fer4_15: 4Fe-4S singl 68.4 1.8 3.9E-05 32.4 0.2 18 216-233 5-22 (65)
271 TIGR01971 NuoI NADH-quinone ox 68.3 2.2 4.8E-05 35.7 0.8 20 215-234 80-99 (122)
272 PRK12831 putative oxidoreducta 68.3 2.5 5.5E-05 43.8 1.4 24 210-233 33-58 (464)
273 cd01916 ACS_1 Acetyl-CoA synth 68.3 3.1 6.8E-05 45.7 2.1 28 272-299 363-390 (731)
274 PRK06273 ferredoxin; Provision 68.0 2 4.4E-05 38.6 0.5 20 215-234 89-108 (165)
275 KOG2282|consensus 67.7 3.4 7.4E-05 43.5 2.1 50 1-51 49-101 (708)
276 PRK11168 glpC sn-glycerol-3-ph 67.1 2.5 5.5E-05 42.5 1.1 20 271-290 4-23 (396)
277 PRK09625 porD pyruvate flavodo 67.1 1.7 3.8E-05 37.5 -0.1 18 216-233 88-105 (133)
278 COG1139 Uncharacterized conser 66.6 2.5 5.5E-05 43.5 1.0 22 212-233 353-374 (459)
279 TIGR00314 cdhA CO dehydrogenas 66.6 3.3 7.1E-05 45.8 1.9 27 272-298 397-423 (784)
280 COG1144 Pyruvate:ferredoxin ox 64.4 2.3 5.1E-05 34.6 0.2 18 215-232 64-81 (91)
281 PRK09624 porD pyuvate ferredox 63.8 2.8 6E-05 34.8 0.5 19 215-233 79-97 (105)
282 TIGR00273 iron-sulfur cluster- 63.8 4.4 9.5E-05 42.0 2.1 29 216-251 342-370 (432)
283 TIGR01318 gltD_gamma_fam gluta 63.4 4.3 9.3E-05 42.1 1.9 30 272-301 38-69 (467)
284 TIGR02066 dsrB sulfite reducta 62.7 2.8 6E-05 42.1 0.4 22 213-234 210-231 (341)
285 PRK09326 F420H2 dehydrogenase 62.7 3.5 7.7E-05 41.1 1.1 18 216-233 52-69 (341)
286 TIGR01317 GOGAT_sm_gam glutama 62.6 2.2 4.8E-05 44.5 -0.4 23 211-233 36-62 (485)
287 TIGR01372 soxA sarcosine oxida 62.5 4.8 0.0001 45.8 2.3 52 1-52 29-90 (985)
288 TIGR02494 PFLE_PFLC glycyl-rad 60.9 3.2 6.8E-05 40.1 0.4 19 273-291 47-65 (295)
289 TIGR02179 PorD_KorD 2-oxoacid: 60.5 2.8 6.1E-05 32.1 -0.0 18 273-290 24-41 (78)
290 PRK00941 acetyl-CoA decarbonyl 60.3 5.3 0.00011 44.3 2.0 28 272-299 402-429 (781)
291 COG0348 NapH Polyferredoxin [E 58.9 4 8.7E-05 41.5 0.8 17 275-291 246-262 (386)
292 PRK11749 dihydropyrimidine deh 58.8 2.5 5.5E-05 43.4 -0.7 25 209-233 32-58 (457)
293 COG4231 Indolepyruvate ferredo 58.2 2.8 6.1E-05 45.0 -0.5 25 210-234 601-625 (640)
294 TIGR03379 glycerol3P_GlpC glyc 57.5 4.7 0.0001 40.7 1.0 18 272-289 3-20 (397)
295 TIGR02912 sulfite_red_C sulfit 57.3 3.6 7.9E-05 40.4 0.1 20 214-233 198-217 (314)
296 TIGR00402 napF ferredoxin-type 56.6 4.4 9.5E-05 33.2 0.5 19 216-234 65-83 (101)
297 COG0247 GlpC Fe-S oxidoreducta 56.2 4.3 9.4E-05 40.3 0.5 33 272-304 7-44 (388)
298 TIGR01316 gltA glutamate synth 55.7 13 0.00029 38.2 4.0 80 212-304 21-114 (449)
299 COG2440 FixX Ferredoxin-like p 55.4 2.3 5E-05 35.1 -1.3 46 216-288 32-79 (99)
300 PRK09623 vorD 2-ketoisovalerat 55.0 4.7 0.0001 33.3 0.4 19 215-233 79-97 (105)
301 PRK06991 ferredoxin; Provision 54.8 4.1 9E-05 39.6 0.1 18 216-233 114-131 (270)
302 PRK12814 putative NADPH-depend 54.0 3.6 7.8E-05 44.6 -0.6 20 214-233 613-632 (652)
303 COG0493 GltD NADPH-dependent g 53.4 14 0.0003 38.6 3.6 83 211-303 17-103 (457)
304 PRK12810 gltD glutamate syntha 52.7 8.6 0.00019 39.8 2.0 30 272-301 42-73 (471)
305 PRK08493 NADH dehydrogenase su 52.7 5.9 0.00013 44.3 0.8 20 216-235 203-222 (819)
306 COG1141 Fer Ferredoxin [Energy 52.5 5 0.00011 31.0 0.2 19 273-291 7-25 (68)
307 PRK15033 tricarballylate utili 52.1 6 0.00013 40.4 0.7 16 216-231 66-81 (389)
308 PRK14028 pyruvate ferredoxin o 50.8 5.9 0.00013 38.9 0.4 19 215-233 287-305 (312)
309 PF08882 Acetone_carb_G: Aceto 50.5 11 0.00023 31.9 1.9 34 41-80 78-111 (112)
310 PRK12831 putative oxidoreducta 50.1 9.3 0.0002 39.6 1.8 30 272-301 38-69 (464)
311 PRK09853 putative selenate red 49.9 6 0.00013 45.2 0.4 18 216-233 925-942 (1019)
312 PRK05113 electron transport co 49.8 4.6 0.0001 37.1 -0.5 19 216-234 143-161 (191)
313 TIGR01944 rnfB electron transp 48.9 5.3 0.00011 35.7 -0.2 18 216-233 142-159 (165)
314 PF13459 Fer4_15: 4Fe-4S singl 48.7 6 0.00013 29.5 0.1 16 273-288 5-20 (65)
315 TIGR02486 RDH reductive dehalo 48.3 5.9 0.00013 39.3 -0.0 17 274-290 205-221 (314)
316 COG2440 FixX Ferredoxin-like p 48.2 6.7 0.00015 32.4 0.3 19 215-233 63-81 (99)
317 PRK08764 ferredoxin; Provision 48.2 7.2 0.00016 33.7 0.5 18 216-233 114-131 (135)
318 PRK08318 dihydropyrimidine deh 47.7 6.9 0.00015 40.0 0.4 17 215-231 375-391 (420)
319 PRK07569 bidirectional hydroge 47.6 6.4 0.00014 37.1 0.1 20 216-235 189-208 (234)
320 TIGR01316 gltA glutamate synth 47.5 11 0.00024 38.8 1.9 29 273-301 25-57 (449)
321 COG2221 DsrA Dissimilatory sul 47.3 6.7 0.00014 38.9 0.2 19 214-232 198-216 (317)
322 TIGR03287 methan_mark_16 putat 46.7 6.3 0.00014 40.3 -0.1 19 215-233 328-346 (391)
323 TIGR02176 pyruv_ox_red pyruvat 46.4 7.8 0.00017 45.1 0.6 18 215-232 737-754 (1165)
324 TIGR00276 iron-sulfur cluster 45.6 6.3 0.00014 38.5 -0.3 18 273-290 158-175 (282)
325 PRK11749 dihydropyrimidine deh 45.2 12 0.00027 38.3 1.8 29 273-301 39-69 (457)
326 TIGR02512 Fe_only_hydrog hydro 44.6 8.2 0.00018 39.0 0.3 19 216-234 49-67 (374)
327 TIGR02700 flavo_MJ0208 archaeo 44.5 7.5 0.00016 36.7 0.1 17 274-290 148-164 (234)
328 PRK15449 ferredoxin-like prote 44.0 8.9 0.00019 31.5 0.4 19 272-290 59-77 (95)
329 PRK13669 hypothetical protein; 42.9 11 0.00024 29.9 0.8 30 12-42 24-58 (78)
330 PRK12779 putative bifunctional 41.9 29 0.00063 39.6 4.2 21 213-233 184-218 (944)
331 TIGR02060 aprB adenosine phosp 41.8 9.8 0.00021 33.0 0.4 19 273-291 7-30 (132)
332 TIGR01973 NuoG NADH-quinone ox 41.6 14 0.00031 39.6 1.6 18 214-231 139-156 (603)
333 PRK13409 putative ATPase RIL; 41.0 8.4 0.00018 41.4 -0.2 21 214-234 46-66 (590)
334 PRK12779 putative bifunctional 40.9 13 0.00029 42.2 1.4 29 16-44 876-908 (944)
335 COG1245 Predicted ATPase, RNas 40.7 10 0.00023 39.8 0.4 18 217-234 50-67 (591)
336 PRK12778 putative bifunctional 40.0 16 0.00036 40.2 1.8 30 272-301 327-358 (752)
337 COG2768 Uncharacterized Fe-S c 39.0 22 0.00047 35.4 2.3 31 214-244 218-249 (354)
338 PRK13795 hypothetical protein; 38.8 12 0.00025 40.8 0.4 20 215-234 610-629 (636)
339 PRK12775 putative trifunctiona 38.6 20 0.00042 41.2 2.2 29 273-301 330-360 (1006)
340 COG0348 NapH Polyferredoxin [E 36.9 11 0.00023 38.4 -0.2 16 218-233 246-261 (386)
341 TIGR03315 Se_ygfK putative sel 35.0 14 0.0003 42.4 0.3 16 218-233 922-937 (1012)
342 COG1245 Predicted ATPase, RNas 34.9 15 0.00032 38.7 0.5 17 273-289 49-65 (591)
343 cd07030 RNAP_D D subunit of Ar 32.9 14 0.0003 35.4 -0.1 18 274-291 169-186 (259)
344 PRK12771 putative glutamate sy 32.7 14 0.00031 39.1 -0.0 17 216-232 540-556 (564)
345 COG1149 MinD superfamily P-loo 32.5 16 0.00035 35.7 0.3 17 274-290 69-85 (284)
346 TIGR03224 benzo_boxA benzoyl-C 32.1 17 0.00037 37.2 0.4 18 273-290 9-26 (411)
347 TIGR02484 CitB CitB domain pro 32.0 19 0.00042 36.6 0.7 18 216-233 47-64 (372)
348 TIGR03336 IOR_alpha indolepyru 32.0 13 0.00028 39.9 -0.5 15 218-232 579-593 (595)
349 PRK00783 DNA-directed RNA poly 31.9 14 0.00031 35.3 -0.2 17 274-290 169-185 (263)
350 COG1035 FrhB Coenzyme F420-red 31.8 15 0.00033 36.8 -0.0 18 273-290 4-21 (332)
351 TIGR03294 FrhG coenzyme F420 h 31.2 14 0.0003 34.9 -0.4 19 215-233 201-219 (228)
352 TIGR01317 GOGAT_sm_gam glutama 30.0 33 0.00072 35.7 2.1 30 272-301 40-73 (485)
353 TIGR02064 dsrA sulfite reducta 29.9 22 0.00049 36.5 0.8 19 214-232 269-287 (402)
354 PRK13409 putative ATPase RIL; 27.9 25 0.00054 37.8 0.7 17 273-289 48-64 (590)
355 COG0493 GltD NADPH-dependent g 26.8 26 0.00056 36.6 0.6 30 272-301 21-51 (457)
356 KOG0430|consensus 26.8 37 0.00079 39.3 1.8 41 21-61 38-89 (1257)
357 TIGR02064 dsrA sulfite reducta 25.6 29 0.00063 35.7 0.7 21 273-293 271-291 (402)
358 COG1600 Uncharacterized Fe-S p 24.9 23 0.00049 35.6 -0.2 21 273-293 184-204 (337)
359 PF12461 DUF3688: Protein of u 24.8 43 0.00094 27.2 1.4 15 125-142 61-75 (91)
360 PF07293 DUF1450: Protein of u 23.8 57 0.0012 25.9 1.9 29 13-42 25-58 (78)
361 PRK06567 putative bifunctional 22.9 34 0.00073 39.3 0.6 48 2-49 946-1003(1028)
362 PF08882 Acetone_carb_G: Aceto 20.9 71 0.0015 27.1 2.0 24 333-356 89-112 (112)
363 COG2871 NqrF Na+-transporting 20.5 92 0.002 31.0 3.0 33 19-51 68-121 (410)
364 PRK07860 NADH dehydrogenase su 20.0 48 0.001 37.0 1.1 19 217-235 190-208 (797)
No 1
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=6.8e-61 Score=446.81 Aligned_cols=200 Identities=56% Similarity=1.015 Sum_probs=184.9
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||||||++||+++||+|+||+|||+||||||+|+|||+|+|||+|.+.++.
T Consensus 31 ~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~~~~----------------------------- 81 (234)
T COG0479 31 TVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMKDLE----------------------------- 81 (234)
T ss_pred cHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccccchhchhhhcc-----------------------------
Confidence 799999999999999999999999999999999999999999999998753
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
.+.|+
T Consensus 82 ---------------------------------------------------------------------------~~~i~ 86 (234)
T COG0479 82 ---------------------------------------------------------------------------EGVIT 86 (234)
T ss_pred ---------------------------------------------------------------------------CCceE
Confidence 23789
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcCCCCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCcccC
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYL 240 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~l 240 (365)
||||+|||||||||||+++||+++++++||++.+.+..... ++|+|+++++++++..||.||.|+++||++..++ +|+
T Consensus 87 iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~~~~-~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~~~~~~-~f~ 164 (234)
T COG0479 87 IEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGE-RLQSPEEREKLDELSECILCGCCTAACPSIWWNP-DFL 164 (234)
T ss_pred EEECCCCCceeeeeeccHHHHHhhhccccceecCCcCCCcc-ccCCHHHHHHHHhhhhccccchhhhhCCcccccc-CCc
Confidence 99999999999999999999999999999999963332222 8999999999999999999999999999998765 899
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHHHHHhcc
Q psy5769 241 GPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGL 306 (365)
Q Consensus 241 gP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~ 306 (365)
||+++.+++|+++|+||....+|+..+...+++|+|++|++|++|||++|+++.+|..+|+++...
T Consensus 165 GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~i~p~~aI~~lk~~~~~~ 230 (234)
T COG0479 165 GPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKR 230 (234)
T ss_pred CHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999989999988777899999999999999999999999999999987753
No 2
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.2e-58 Score=434.86 Aligned_cols=200 Identities=30% Similarity=0.625 Sum_probs=178.8
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||||||++||+++||||+||+|||+||||||||+|||+|+|||+|+|.+..
T Consensus 35 tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC~t~v~~~~----------------------------- 85 (239)
T PRK13552 35 TLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRTLTSDYP----------------------------- 85 (239)
T ss_pred CHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhhhccHhhcC-----------------------------
Confidence 799999999999999999999999999999999999999999999997531
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
++.|+
T Consensus 86 ---------------------------------------------------------------------------~~~i~ 90 (239)
T PRK13552 86 ---------------------------------------------------------------------------DGVIT 90 (239)
T ss_pred ---------------------------------------------------------------------------CCcEE
Confidence 35799
Q ss_pred EeecCCCCccccccccchHHHHHH-HhhCCccccCcCCC-CcccccCCHHHHHhcccchhcccCCcccccCCCceeCCcc
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQY-KSIQPWLQRDKENI-GNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEK 238 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~kl-k~vkp~l~~~~~~~-~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~ 238 (365)
||||+|||||||||||++.||+++ ++++||++++.... +..+.+|+++++++++.+..||+||.|+++||++..+ ..
T Consensus 91 iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~~~~-~~ 169 (239)
T PRK13552 91 LMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAACGTKQMR-ED 169 (239)
T ss_pred EEECCCCCcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHhhCCCCccC-CC
Confidence 999999999999999999999999 89999998754322 2235789999999999999999999999999998764 47
Q ss_pred cCCHHHHHHHHHHHhccCChhHHHHH-hhhcCCCccccccccccccccCcCCCChHHHHHHHHHHHhc
Q psy5769 239 YLGPAVLMQAYRWIIDSRDEKTADRL-NQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSG 305 (365)
Q Consensus 239 ~lgP~~l~~~~r~~~d~rd~~~~erl-~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~ 305 (365)
|+||+++++++|+..|+||....+++ +.+.+.+++|.|++||+|+++||++|++.++|.++|+.++.
T Consensus 170 f~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~gi~~C~~C~~C~~vCPk~I~~~~~I~~lr~~~~~ 237 (239)
T PRK13552 170 FVGAVGLNRIARFELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKDLPLQQQIAYLRRKMAA 237 (239)
T ss_pred ccChHHHHHHHHHhhCCCcchhHHHHHHHhccCCCcCCCcCcCccchhCCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999987666666 44556679999999999999999999999999999987763
No 3
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=100.00 E-value=2.6e-58 Score=440.56 Aligned_cols=199 Identities=70% Similarity=1.273 Sum_probs=181.1
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||||||++|++++||||+||+|||+||||||+|+|||+|+|||+|+|.++.
T Consensus 74 tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~p~LAC~t~v~~~~----------------------------- 124 (276)
T PLN00129 74 MVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLACLTKIDRDE----------------------------- 124 (276)
T ss_pred hHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCcccccccccHhhcC-----------------------------
Confidence 699999999999999999999999999999999999999999999997542
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
++.|+
T Consensus 125 ---------------------------------------------------------------------------~~~i~ 129 (276)
T PLN00129 125 ---------------------------------------------------------------------------SGPTT 129 (276)
T ss_pred ---------------------------------------------------------------------------CCcEE
Confidence 25689
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcCCCC-cccccCCHHHHHhcccchhcccCCcccccCCCceeCCccc
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIG-NAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKY 239 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~-~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~ 239 (365)
||||+|||||||||||+++||+++++++||++++..... ..+++|+++++++++.+..||+||.|+++||++..++++|
T Consensus 130 iePl~~fpVirDLvVD~~~f~~klk~v~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~~~~f 209 (276)
T PLN00129 130 ITPLPHMFVIKDLVVDMTNFYQQYKSIEPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKF 209 (276)
T ss_pred EEECCCCCeeeecccccHHHHHHHHhccccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCcccCccc
Confidence 999999999999999999999999999999987654322 2468999999999999999999999999999997777779
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHHHHH
Q psy5769 240 LGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLL 303 (365)
Q Consensus 240 lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l 303 (365)
+||+++++++|++.|+||....++++.+.+..++|.|++|++|+++||+||++.++|..+|+.+
T Consensus 210 lGP~~l~~a~R~~~D~RD~~~~erl~~l~~~~gl~~C~~C~~C~~vCPkgI~p~~~I~~lR~~~ 273 (276)
T PLN00129 210 LGPAALLHAYRWISDSRDEYTKERLEALDDEFKLYRCHTIRNCSNACPKGLNPAKAIAKIKQLL 273 (276)
T ss_pred ccHHHHHHHHHhcCCccccchHHHHHHHHhcCCCCcCcChhhccccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987777888776666799999999999999999999999999999753
No 4
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=7.5e-58 Score=429.84 Aligned_cols=198 Identities=56% Similarity=1.081 Sum_probs=180.1
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||||+|++|+ ++||||+||+|||+||||||||+|||+|+|||+|+|.+.
T Consensus 35 tvld~L~~ik-~~d~~l~fr~sCr~giCGsCa~~iNG~~~LaC~t~~~~~------------------------------ 83 (235)
T PRK12575 35 MLLDVLGRVK-AQDETLSYRRSCREGICGSDAMNINGRNGLACLTNMQAL------------------------------ 83 (235)
T ss_pred cHHHHHHHHH-hcCCCeeeeccCCCCCCCCCeeEECCeEcchhhCcHhHc------------------------------
Confidence 7999999999 789999999999999999999999999999999999753
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
.+.|+
T Consensus 84 ---------------------------------------------------------------------------~~~i~ 88 (235)
T PRK12575 84 ---------------------------------------------------------------------------PREIV 88 (235)
T ss_pred ---------------------------------------------------------------------------CCCEE
Confidence 13589
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcCCCCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCcccC
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYL 240 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~l 240 (365)
||||+|||||||||||+++||+++++++||++++...+ ..+.+|+|++++.++.+..||+||.|+++||++..++++|+
T Consensus 89 iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~-~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~~~~~~~~f~ 167 (235)
T PRK12575 89 LRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPP-ERERLQTPQEREQLDGLYECILCACCSTACPSYWWNPDKFV 167 (235)
T ss_pred EeECCCCCccccceecCHHHHHHHHhccCccccCCCCc-cccccCCHHHHHHHHhhhhCcccccccccccCccccCCCcC
Confidence 99999999999999999999999999999998775432 23678999999999999999999999999999987667799
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHHHHHhc
Q psy5769 241 GPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSG 305 (365)
Q Consensus 241 gP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~ 305 (365)
||++++++++++.|+||....++++.+.+++++|.|++||+|+++||+||++.++|..+|+.+.+
T Consensus 168 GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPkgI~~~~~I~~lR~~~~~ 232 (235)
T PRK12575 168 GPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLAR 232 (235)
T ss_pred CHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999998777777876666679999999999999999999999999999988764
No 5
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=1.6e-56 Score=424.33 Aligned_cols=200 Identities=25% Similarity=0.514 Sum_probs=178.9
Q ss_pred CHHHHHHHhhhc-------cCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchh
Q psy5769 1 MVLDALIKIKNE-------MDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMN 73 (365)
Q Consensus 1 ~vl~al~~i~~~-------~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~ 73 (365)
||||||++|+++ +|++|+||+|||+||||||||+|||+|+|||+|+|.+.
T Consensus 34 tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~LAC~t~v~~~----------------------- 90 (249)
T PRK08640 34 NVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPRQACTALIDQL----------------------- 90 (249)
T ss_pred cHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccchhhhChHHHc-----------------------
Confidence 799999999975 68889999999999999999999999999999999643
Q ss_pred hHHHHhhhhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhcccccc
Q psy5769 74 NFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKID 153 (365)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (365)
T Consensus 91 -------------------------------------------------------------------------------- 90 (249)
T PRK08640 91 -------------------------------------------------------------------------------- 90 (249)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEEeecCCCCccccccccchHHHHHHHhhCCccccCcCCCCcccccCCHHHHHhcccchhcccCCcccccCCCce
Q psy5769 154 ANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 154 ~~~~~~~IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~ 233 (365)
++.|+||||+|||||||||||+++||+++++++||++++.......+..|++++++.++.+..||+||.|+++||++.
T Consensus 91 --~~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 91 --EQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYDLGPGPRMPEEKRQWAYELSKCMTCGCCLEACPNVN 168 (249)
T ss_pred --CCcEEEEECCCCCccccCcEEChHHHHHHHhhCCccccCCCCCCCcccCCCHHHHHHHhhhhhccCcCcccccCCCCc
Confidence 246899999999999999999999999999999999987653333457899999999999999999999999999998
Q ss_pred eCCcccCCHHHHHHHHHHHhcc-CChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHHHHHhcc
Q psy5769 234 WNGEKYLGPAVLMQAYRWIIDS-RDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGL 306 (365)
Q Consensus 234 ~~~~~~lgP~~l~~~~r~~~d~-rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~ 306 (365)
.+ .+|+||+++.+++++..|+ ++....++++.+.+.+++|.|++||+|+++||+||++.+.|..+|+.+++.
T Consensus 169 ~~-~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkgI~~~~~I~~lr~~~~~~ 241 (249)
T PRK08640 169 EK-SDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKGIPLTTSIAAMNRETTKQ 241 (249)
T ss_pred cC-CCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCCCCHHHHHHHHHHHHHHH
Confidence 65 4799999999999999998 554566777766667899999999999999999999999999999988754
No 6
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=6e-54 Score=406.47 Aligned_cols=199 Identities=24% Similarity=0.499 Sum_probs=177.6
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||||+|++|++++||||+||+||++|+||||+|+|||+|+|||+|++.+..
T Consensus 31 tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~laC~t~~~~~~----------------------------- 81 (251)
T PRK12386 31 VVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRMSTFD----------------------------- 81 (251)
T ss_pred CHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEeccHHhHHHHhC-----------------------------
Confidence 799999999999999999999999999999999999999999999996431
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
+++++|
T Consensus 82 --------------------------------------------------------------------------~~~~it 87 (251)
T PRK12386 82 --------------------------------------------------------------------------EDETVT 87 (251)
T ss_pred --------------------------------------------------------------------------CCCeEE
Confidence 135789
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcCCCCcccccCCHHHHHhcccchhcccCCcccccCCCceeC---Cc
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWN---GE 237 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~---~~ 237 (365)
||||+|||||||||||+++||+++++++||++++...+ .+.+|+++++++++.+..||+||.|+++||++..+ +.
T Consensus 88 iepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~CI~CG~C~s~CPv~~~~~~~~~ 165 (251)
T PRK12386 88 VTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQP--GEYRMQQVDVERSQEFRKCIECFLCQNVCHVVRDHEENKP 165 (251)
T ss_pred EccCCCCCccccceEEcHHHHHHHHhcCCcccCCCCCc--cccCCCHHHHHHHhchhhcccCCcccCcCCcccccCCCcc
Confidence 99999999999999999999999999999998654432 45789999999999999999999999999999764 35
Q ss_pred ccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHH-HHHHHHHHHhcc
Q psy5769 238 KYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGR-AIAEIKKLLSGL 306 (365)
Q Consensus 238 ~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~-~I~~lR~~l~~~ 306 (365)
+|+||+++++++++++|+||. .+++..+...+++|.|++|++|.++||+||++.+ .|..+|+.+.+.
T Consensus 166 ~f~GP~~~~~a~r~~~D~Rd~--~~rl~~~~~~~gl~~C~~C~~C~~vCPkgI~~~~~~I~~lr~~~~~~ 233 (251)
T PRK12386 166 AFAGPRFLMRIAELEMHPLDT--ADRRAEAQEEHGLGYCNITKCCTEVCPEHIKITDNALIPMKERVVDR 233 (251)
T ss_pred cccCHHHHHHHHHhhcCccch--HHHHHHhhcccCcccCcCCCCcCCcCCCCcChhHHHHHHHHHHHHHh
Confidence 799999999999999999996 3566655556799999999999999999999984 899998877653
No 7
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.8e-52 Score=411.46 Aligned_cols=231 Identities=32% Similarity=0.595 Sum_probs=193.2
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||||||++|+.++||||+||.+|++|+||+|+|+|||+++|||+|+|.++.+
T Consensus 30 tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~~~~~---------------------------- 81 (329)
T PRK12577 30 TILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGSELA---------------------------- 81 (329)
T ss_pred hHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchhhhhc----------------------------
Confidence 7999999999999999999999999999999999999999999999986420
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
||... ...+++.|+
T Consensus 82 ------------------------------------------------~~~~~------------------~~~~~~~i~ 95 (329)
T PRK12577 82 ------------------------------------------------RLSDS------------------NSGAIPEIT 95 (329)
T ss_pred ------------------------------------------------ccccc------------------ccCCCCeEE
Confidence 01000 000246899
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcCCCCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCcccC
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYL 240 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~l 240 (365)
||||+|||||||||||+++||+++++++||+.++....+..+++|+|++++.++.+..||+||.|+++||++..+ .+|+
T Consensus 96 iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~~~~~~~~~~e~~~~p~~~~~~~~~~~Ci~CG~C~s~CP~~~~~-~~f~ 174 (329)
T PRK12577 96 IAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQVPEREFLQTPEERSKLDQTGNCILCGACYSECNAREVN-PEFV 174 (329)
T ss_pred EEECCCCCccccceeccHHHHHHHHhccCccccCCCCCCcccccCCHHHHHHHHHhhhCcccCcccccCCCCCcC-cCcC
Confidence 999999999999999999999999999999998765444557899999999999999999999999999999865 4799
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHhhhc-CCCccccccccccccccCcCCCChHHHHHHHHHHHhcccccCCCCc----c
Q psy5769 241 GPAVLMQAYRWIIDSRDEKTADRLNQLK-DPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVKKDKPGL----D 315 (365)
Q Consensus 241 gP~~l~~~~r~~~d~rd~~~~erl~~~~-~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~~~~P~~----~ 315 (365)
||+++++++|++.|+|+....++++.+. ...++|.|++|++|+.+||++|++.+.|..+|+.+... +..+.. +
T Consensus 175 GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I~~~~~I~~lr~~~~~~--~~~~~~~~~~h 252 (329)
T PRK12577 175 GPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQEILAR--KDAQDSRAIRH 252 (329)
T ss_pred CHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCCchHHHHHHHHHHHHHh--cCCCCcchhhH
Confidence 9999999999999999877777777543 45689999999999999999999999999999988754 222222 2
Q ss_pred -hhhhcccccCCcc
Q psy5769 316 -TAALHKIDANDKV 328 (365)
Q Consensus 316 -~~~L~nIer~Gn~ 328 (365)
..+...+..+|.+
T Consensus 253 ~~~~~~~v~~~Gr~ 266 (329)
T PRK12577 253 RKVLVDLVKEGGWI 266 (329)
T ss_pred HHHHHHHHHhcCEE
Confidence 2445566666654
No 8
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2e-52 Score=395.47 Aligned_cols=199 Identities=32% Similarity=0.602 Sum_probs=180.2
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
|||+||++|++++|++|+||++||+|+||||+|+|||+++|||.|++.++
T Consensus 36 tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC~t~~~~~------------------------------ 85 (244)
T PRK12385 36 SLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDY------------------------------ 85 (244)
T ss_pred cHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhHhhHHHHc------------------------------
Confidence 79999999999999999999999999999999999999999999999753
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
++.++
T Consensus 86 ---------------------------------------------------------------------------~~~~~ 90 (244)
T PRK12385 86 ---------------------------------------------------------------------------TGGMK 90 (244)
T ss_pred ---------------------------------------------------------------------------CCCeE
Confidence 24589
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcCCCCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCcccC
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYL 240 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~l 240 (365)
||||++||||||||||+++||+++++++||+.++....+..+.+|++++.+.+..+..||+||.|+++||++..+ .+|+
T Consensus 91 iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~~~~-~~y~ 169 (244)
T PRK12385 91 VEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTPDDGPNKQTPAQMAKYHQFSGCINCGLCYAACPQFGLN-PEFI 169 (244)
T ss_pred EeeCCCCCeeeeCeeecHHHHHHHHHhcCeeeCCCCCCCcccccCCHHHHHHHHHHHhcCcCccccCcCcCcccC-CCCC
Confidence 999999999999999999999999999999987654434445789999999999999999999999999999764 5799
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHHHHHhc
Q psy5769 241 GPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSG 305 (365)
Q Consensus 241 gP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~ 305 (365)
||+++.+++|+..|+||....+++..+...+++|.|++||+|+++||++|++.++|..+|+.+.+
T Consensus 170 GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~~C~~C~~vCP~~I~~~~~I~~~r~~~~~ 234 (244)
T PRK12385 170 GPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESAK 234 (244)
T ss_pred CHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCcCcccccccCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999877777776655679999999999999999999999999999987764
No 9
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=1.9e-50 Score=379.33 Aligned_cols=200 Identities=67% Similarity=1.166 Sum_probs=179.9
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||||||++|++++||+|+||.+|++|+||+|+|+|||+++|||+|++.+..
T Consensus 30 tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~~~----------------------------- 80 (232)
T PRK05950 30 MVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISDLK----------------------------- 80 (232)
T ss_pred HHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhHcC-----------------------------
Confidence 799999999999999999999999999999999999999999999997531
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
++++|
T Consensus 81 ---------------------------------------------------------------------------~~~~t 85 (232)
T PRK05950 81 ---------------------------------------------------------------------------KGKIV 85 (232)
T ss_pred ---------------------------------------------------------------------------CCeEE
Confidence 36789
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcCCCCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCcccC
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYL 240 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~l 240 (365)
||||+|||||||||||++.||+++++++||+.++... +..+..+++++.+.+..+..||+||.|+++||++..++++|+
T Consensus 86 iepl~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~ 164 (232)
T PRK05950 86 IRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPP-PARERLQSPEDREKLDGLYECILCACCSTSCPSFWWNPDKFL 164 (232)
T ss_pred EEECCCCCeeeeceeehHHHHHHHHhccCeecCCCCC-CchhccCCHHHHHHHHhHHhccccccccccCCccccCCCCCC
Confidence 9999999999999999999999999999999876543 334567999999999999999999999999999976666699
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHHHHHhc
Q psy5769 241 GPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSG 305 (365)
Q Consensus 241 gP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~ 305 (365)
||++++++++++.++++....++++.+.+..++|.|++||+|..+||++|++.++|..+|+.+++
T Consensus 165 gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~~Cg~C~~~CP~gi~~~~~I~~lR~~~~~ 229 (232)
T PRK05950 165 GPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLE 229 (232)
T ss_pred CHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCcCcCCcCccccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988766666665555668999999999999999999999999999998875
No 10
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=4.9e-50 Score=385.88 Aligned_cols=224 Identities=33% Similarity=0.588 Sum_probs=188.5
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||||||++|++++||+|+||++|++|+||+|+|+|||+++|||.|++.+..
T Consensus 36 tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~t~v~~~~----------------------------- 86 (279)
T PRK12576 36 QVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACKTLVLDVA----------------------------- 86 (279)
T ss_pred HHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEeccccCcHHHhh-----------------------------
Confidence 799999999999999999999999999999999999999999999997642
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
+..++.+|
T Consensus 87 ------------------------------------------------------------------------~~~~~~~t 94 (279)
T PRK12576 87 ------------------------------------------------------------------------KKYNSVIT 94 (279)
T ss_pred ------------------------------------------------------------------------cCCCCcEE
Confidence 00146789
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcCC-CCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCccc
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKEN-IGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKY 239 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~-~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~ 239 (365)
||||+|||||||||||+++||+++++++||+.++.+. .+..+..+++++++++.++..||+||+|+++||++..+ .+|
T Consensus 95 iePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~~~CP~~~~~-~~f 173 (279)
T PRK12576 95 IEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCVSACPVVAID-PEF 173 (279)
T ss_pred EEECCCCceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCcccccCCCcccc-CCc
Confidence 9999999999999999999999999999999977542 22346789999999999999999999999999999764 479
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHHHHHhcccc-cC----CCCc
Q psy5769 240 LGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVK-KD----KPGL 314 (365)
Q Consensus 240 lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~-~~----~P~~ 314 (365)
+||.++++++|+..|+++....+++..+ ..++|.|++||+|+++||++|++.++|..+|+.+..+.. +. ...+
T Consensus 174 lgP~~l~~a~r~~~d~rd~~~~~rl~~~--~~~i~~C~~Cg~C~~~CP~~I~~~~~I~~lR~~~~~~~~~~~~~~~~~~~ 251 (279)
T PRK12576 174 LGPAAHAKGYRFLADPRDTITEERMKIL--IDSSWRCTYCYSCSNVCPRDIEPVTAIKKTRSFTRVYKPKSEVAERGEKH 251 (279)
T ss_pred CCHHHHHHHHHHhcCccccchHHHHHHH--cCcCCcccCcccchhhCCCCCcHHHHHHHHHHHHHhcCCCccccccccch
Confidence 9999999999999999987666676543 357899999999999999999999999999998654322 11 1223
Q ss_pred chhhhcccccCCcc
Q psy5769 315 DTAALHKIDANDKV 328 (365)
Q Consensus 315 ~~~~L~nIer~Gn~ 328 (365)
...+...+.++|.+
T Consensus 252 ~~~~~~~~~~~g~~ 265 (279)
T PRK12576 252 VEAIRESIFKTGKL 265 (279)
T ss_pred HHHHHHHhhhcCEE
Confidence 34555667667743
No 11
>KOG3049|consensus
Probab=100.00 E-value=3.3e-50 Score=364.28 Aligned_cols=205 Identities=83% Similarity=1.451 Sum_probs=189.0
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
+|||||.+||.++||||+||.|||+||||||||.|||.+.|||.++|+.+.
T Consensus 78 MvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~G~NtLACi~kId~n~----------------------------- 128 (288)
T KOG3049|consen 78 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGTNTLACICKIDQNE----------------------------- 128 (288)
T ss_pred HHHHHHHHhhcccCCceehhhhhhccccccceeccCCCceeEEEEeeccCC-----------------------------
Confidence 599999999999999999999999999999999999999999999997542
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
++..+
T Consensus 129 ---------------------------------------------------------------------------sK~~k 133 (288)
T KOG3049|consen 129 ---------------------------------------------------------------------------SKSTK 133 (288)
T ss_pred ---------------------------------------------------------------------------cccce
Confidence 35567
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcC--CCCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCcc
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE--NIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEK 238 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~--~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~ 238 (365)
|-||+|+=||||||+|++.||+.+++++|||..+.. ..|..+++|+.+++.+++.++.||+|..|..+||.|.++.++
T Consensus 134 IyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR~kLDGlYECILCACCsTSCPSYWWN~ek 213 (288)
T KOG3049|consen 134 IYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDRAKLDGLYECILCACCSTSCPSYWWNSEK 213 (288)
T ss_pred eecCcceeeehhhcccHHHHHHHHhcccHHhhcCCcccCccHHHHHHhHHHHHhhccHHHHHHHHHhcCCCcccccCccc
Confidence 889999999999999999999999999999987765 346788999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHHHHHhccccc
Q psy5769 239 YLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVKK 309 (365)
Q Consensus 239 ~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~~ 309 (365)
|+||+.++++||++.|+||....+|+..+.++..+|+|++-++|+..||+|+++..+|.+++..+.+...+
T Consensus 214 YLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~slyrCHtImNCtrtCPKgLNPg~aI~eiK~ll~~~~~k 284 (288)
T KOG3049|consen 214 YLGPAVLMQAYRWIIDSRDEATKERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKLLAGAKSK 284 (288)
T ss_pred ccCHHHHHHHHhhhhcchhHHHHHHHHHhcCchhheehhhhhhhhhcCCCCCCHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999998888999999999999999999999999999999999865433
No 12
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=100.00 E-value=1.6e-49 Score=370.22 Aligned_cols=194 Identities=55% Similarity=1.050 Sum_probs=173.4
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccc-cccccccccCCccccccccccchhhHHHHh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDA-NDKVSKIYPLPHMYVVKDLVPDMNNFYAQY 79 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~-~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~ 79 (365)
||||||.+|++++||+|+||.+|++|+||+|+|+|||+++|||+|++.+ +|
T Consensus 26 tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~---------------------------- 77 (220)
T TIGR00384 26 TVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQ---------------------------- 77 (220)
T ss_pred cHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCC----------------------------
Confidence 7999999999999999999999999999999999999999999999987 43
Q ss_pred hhhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcE
Q psy5769 80 KSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVS 159 (365)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (365)
+.+
T Consensus 78 -----------------------------------------------------------------------------~~~ 80 (220)
T TIGR00384 78 -----------------------------------------------------------------------------PVM 80 (220)
T ss_pred -----------------------------------------------------------------------------CcE
Confidence 357
Q ss_pred EEeecCCCCccccccccchHHHHHHHhhCCccccCcCCCCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCccc
Q psy5769 160 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKY 239 (365)
Q Consensus 160 ~IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~ 239 (365)
+||||++||||||||||++.||+++++++||+.++.......+.++++++.+.+..+..||+||.|+++||++..++ +|
T Consensus 81 ~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~~-~~ 159 (220)
T TIGR00384 81 KIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPEPEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWNP-EF 159 (220)
T ss_pred EEeeCCCCceeeeeeechHHHHHHHHhcCCeecCCCCCCccccccCCHHHHHHHhhhhhccccccccccCCCCccCC-CC
Confidence 99999999999999999999999999999999876543333456899999999999999999999999999997543 69
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHH
Q psy5769 240 LGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIK 300 (365)
Q Consensus 240 lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR 300 (365)
+||++++++++++.++++....++++...+..++|.|++||+|+++||++|++.++|..+|
T Consensus 160 ~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~I~~~~~I~~lR 220 (220)
T TIGR00384 160 LGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKGVNPARAIEKLK 220 (220)
T ss_pred cCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCCCCHHHHHHHhC
Confidence 9999999999999999886566666655445689999999999999999999999999875
No 13
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=100.00 E-value=8.9e-49 Score=371.31 Aligned_cols=193 Identities=22% Similarity=0.406 Sum_probs=153.8
Q ss_pred CHHHHHHHhhhcc----CCCcccccCCCCCCcCccEEEeCCcc------cccccccccccccccccccCCcccccccccc
Q psy5769 1 MVLDALIKIKNEM----DPTLTFRRSCREGICGSCAMNIGGVN------TLACISKIDANDKVSKIYPLPHMYVVKDLVP 70 (365)
Q Consensus 1 ~vl~al~~i~~~~----d~~l~~~~~C~~~~CgsC~v~inG~~------~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~ 70 (365)
||||||++|++++ |++|+||+|||+||||||||+|||+| +|||+|+|.+..
T Consensus 32 tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~~~~LAC~t~~~~~~------------------- 92 (250)
T PRK07570 32 SFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPDRGTTTCQLHMRSFK------------------- 92 (250)
T ss_pred cHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCCcccchhhhhhhhcC-------------------
Confidence 7999999999765 45699999999999999999999999 999999986431
Q ss_pred chhhHHHHhhhhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccc
Q psy5769 71 DMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 150 (365)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (365)
T Consensus 93 -------------------------------------------------------------------------------- 92 (250)
T PRK07570 93 -------------------------------------------------------------------------------- 92 (250)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcEEEeecC--CCCccccccccchHHHHHHHhhCCccccCcC-CCCcccccCCHHHHHhcccchhcccCCcccc
Q psy5769 151 KIDANDKVSKIYPLP--HMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE-NIGNAQYLQSLDDRKKLDGLYECILCACCST 227 (365)
Q Consensus 151 ~~~~~~~~~~IePL~--~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~-~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s 227 (365)
.++.|+||||+ |||||||||||++.| +++++++||++++.. .....+.+|++++++++..+..||+||.|++
T Consensus 93 ----~~~~i~iePl~~~~fpvikDLvVD~~~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~C~s 167 (250)
T PRK07570 93 ----DGDTITIEPWRAAAFPVIKDLVVDRSAL-DRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAAACIGCGACVA 167 (250)
T ss_pred ----CCCeEEEEECCCCCCCeeeeceeecHHH-HHHHhcCCeEecCCCCCCCccccCCCHHHHHhhhCccccCCCccccc
Confidence 13579999998 999999999999995 999999999997642 2222357899999999999999999999999
Q ss_pred cCCCceeCCcccCCHHHHHHHHHHHhccCChh-H----HHHHhhhcCCCccccccccccccccCcCCCChHHHHHHHHHH
Q psy5769 228 SCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEK-T----ADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKL 302 (365)
Q Consensus 228 ~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~-~----~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~ 302 (365)
+||++.. +.|+||+. .++ ++ .+++.. . ..++..+ +..++|.|++||+|+++||++|++. .|..+++.
T Consensus 168 aCP~~~~--~~f~Gp~~-~~~-~l--~p~~~~~r~~~~~~~~~~~-~~~gv~~C~~Cg~Cs~VCPk~I~~~-~I~~l~r~ 239 (250)
T PRK07570 168 ACPNGSA--MLFTGAKV-SHL-AL--LPQGQPERARRVRAMVAQM-DEEGFGNCTNTGECEAVCPKGISLE-NIARMNRE 239 (250)
T ss_pred ccCCccc--ccccchhh-hhh-hh--CcccchhHHHHHHHHHHHH-hccCcccCcccCccccccCCCCCHH-HHHHHHHH
Confidence 9999963 46999865 333 22 332111 1 1122222 3368999999999999999999985 77777665
Q ss_pred Hhc
Q psy5769 303 LSG 305 (365)
Q Consensus 303 l~~ 305 (365)
+..
T Consensus 240 ~~~ 242 (250)
T PRK07570 240 YLR 242 (250)
T ss_pred HHH
Confidence 553
No 14
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=312.68 Aligned_cols=208 Identities=33% Similarity=0.590 Sum_probs=176.0
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||||||++|+.+++|+|+|+++|+.|+||+|+|+|||+++|||.|++.++
T Consensus 32 tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~~~------------------------------ 81 (486)
T PRK06259 32 TVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACKTEVEDG------------------------------ 81 (486)
T ss_pred hHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccccCCCCC------------------------------
Confidence 79999999998889999999999999999999999999999999999754
Q ss_pred hhhhccCCCcccccccccchhhhhhhhhhhccCCCCCcccccchhhccccCCCCCCCCcchhhhhhhccccccCCCCcEE
Q psy5769 81 SIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKIDANDKVSK 160 (365)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (365)
++
T Consensus 82 ------------------------------------------------------------------------------~~ 83 (486)
T PRK06259 82 ------------------------------------------------------------------------------MI 83 (486)
T ss_pred ------------------------------------------------------------------------------CE
Confidence 37
Q ss_pred EeecCCCCccccccccchHHHHHHHhhCCccccCcCCCCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCcccC
Q psy5769 161 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYL 240 (365)
Q Consensus 161 IePL~~fpVIkDLvVD~~~ff~klk~vkp~l~~~~~~~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~l 240 (365)
|+|++ ||++||||||+++|+++++++++|+.++.. .++++++.++++.+..||+||.|.++||++.. ++|+
T Consensus 84 i~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~--~~~~ 154 (486)
T PRK06259 84 IEPLD-FPVIKDLIVDREPYYKKLKSLRNYLQRKNE------KITYPEDIEDIKKLRGCIECLSCVSTCPARKV--SDYP 154 (486)
T ss_pred EEecC-CcchhccccccHHHHHHHHhhcCCCCCCcc------CCCCHHHHHHHhCchhcccCccccccCCCCcc--ccCc
Confidence 89999 999999999999999999999999987642 35899999999999999999999999999985 4799
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCCh-HHHHHHHHHHHhcccccCCCCcchhhh
Q psy5769 241 GPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNP-GRAIAEIKKLLSGLVKKDKPGLDTAAL 319 (365)
Q Consensus 241 gP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~-~~~I~~lR~~l~~~~~~~~P~~~~~~L 319 (365)
||+.+..++++..++++.. +++.... ..++|.|++||+|+.+||+||++ .++|..+|+.+.+. +..+.....+.
T Consensus 155 gp~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~C~~C~~C~~~CP~gi~~~~~~i~~~R~~~~~~--g~~~~~~~~~~ 229 (486)
T PRK06259 155 GPTFMRQLARFAFDPRDEG--DREKEAF-DEGLYNCTTCGKCVEVCPKEIDIPGKAIEKLRALAFKK--GLGLPAHLEVR 229 (486)
T ss_pred CHHHHHHHHHHhhCCcchh--hHHHHHh-cCCCcCCCCcCcccCcCCCCCCchHHHHHHHHHHHHHc--cCCHHHHHHHH
Confidence 9999999999988887653 2333222 25899999999999999999998 89999999988754 22233334445
Q ss_pred cccccCCccce
Q psy5769 320 HKIDANDKVSK 330 (365)
Q Consensus 320 ~nIer~Gn~i~ 330 (365)
.++.+.|+.+.
T Consensus 230 ~~~~~~g~~~~ 240 (486)
T PRK06259 230 ENVLKTGRSVP 240 (486)
T ss_pred HHHHHhCCCCC
Confidence 56666665543
No 15
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.97 E-value=1.7e-32 Score=229.35 Aligned_cols=77 Identities=55% Similarity=0.913 Sum_probs=69.0
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCccccccccccccccc----ccccccCCccccccccccchhhHH
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDK----VSKIYPLPHMYVVKDLVPDMNNFY 76 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~~~~----~~~~~p~~~~~~~~dl~~~~~~~~ 76 (365)
||||||++|++++||||+||+|||+|+||||||+|||+|+|||+|++.++.. .|+||||++|||||||+||++.||
T Consensus 30 tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~~~~~~~~i~IePL~~fpVirDLvVD~~~f~ 109 (110)
T PF13085_consen 30 TVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDLIEKFGNVITIEPLPNFPVIRDLVVDMSPFF 109 (110)
T ss_dssp BHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGCTTSETBEEEEEESTTSBEEETTEEETHHHH
T ss_pred cHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhccCCCcceEEEEECCCCCcceeCceeChHHc
Confidence 7999999999999999999999999999999999999999999999999865 389999999999999999999998
Q ss_pred H
Q psy5769 77 A 77 (365)
Q Consensus 77 ~ 77 (365)
+
T Consensus 110 e 110 (110)
T PF13085_consen 110 E 110 (110)
T ss_dssp H
T ss_pred C
Confidence 5
No 16
>KOG3049|consensus
Probab=99.70 E-value=1e-17 Score=152.92 Aligned_cols=57 Identities=63% Similarity=1.079 Sum_probs=46.4
Q ss_pred ccccCCCCcchhhhcccccC-CccceeccCCCCccccccCcChHHHHHHHHhcCCcccCC
Q psy5769 306 LVKKDKPGLDTAALHKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRS 364 (365)
Q Consensus 306 ~~~~~~P~~~~~~L~nIer~-Gn~i~i~PL~~~~viRDL~vd~~~f~~~~~~~~p~~~~~ 364 (365)
|++++...++ ++.+|..+ .+..+|+||++++++|||++||..|+++|+.|+|||+++
T Consensus 110 MNI~G~NtLA--Ci~kId~n~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk 167 (288)
T KOG3049|consen 110 MNINGTNTLA--CICKIDQNESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRK 167 (288)
T ss_pred eccCCCceeE--EEEeeccCCcccceeecCcceeeehhhcccHHHHHHHHhcccHHhhcC
Confidence 4445544444 67788764 467899999999999999999999999999999999754
No 17
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=99.53 E-value=5.7e-15 Score=133.89 Aligned_cols=99 Identities=20% Similarity=0.405 Sum_probs=76.0
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHH
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGR 294 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~ 294 (365)
.+..|++||.|+++||+.+.++ ++|+.+++.++.... + .+..++.+|+|++|+.|.+.||.++++.+
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~t~---y~pR~ii~~~~~g~~-------d---~il~~~~lW~C~tCytC~eRCPr~v~i~~ 103 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRFTD---YSPRKIIRKARLGLV-------D---LILSSESLWACVTCYTCTERCPRGVKIVE 103 (195)
T ss_pred hHhHhhccCcccCCCCCcccCC---CCHHHHHHHHHcccH-------H---HHhcCCcceeeeechhhhhhCCCCCCHHH
Confidence 4567999999999999998743 799999998876321 1 23345789999999999999999999999
Q ss_pred HHHHHHHHHhcccccC-CCCcchhhhcccccCC
Q psy5769 295 AIAEIKKLLSGLVKKD-KPGLDTAALHKIDAND 326 (365)
Q Consensus 295 ~I~~lR~~l~~~~~~~-~P~~~~~~L~nIer~G 326 (365)
++..+|+.+++.+.-. .+..+..++..+-++|
T Consensus 104 vv~~lR~~a~k~G~~~~~~~~~~~vl~~V~~tG 136 (195)
T COG1150 104 VVKALRNIAVKEGLIEPMLKAHREVLETVITTG 136 (195)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHhC
Confidence 9999999998753211 2333345566665666
No 18
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=99.46 E-value=5.8e-14 Score=122.92 Aligned_cols=96 Identities=15% Similarity=0.289 Sum_probs=67.6
Q ss_pred hhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHH
Q psy5769 217 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAI 296 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I 296 (365)
..||+||.|+++||++... ...|+.+++..+ ++. +.. +.....+|.|++||.|..+||++|++.++|
T Consensus 2 ~~Ci~CG~C~~~CP~~~~~---~~~~~~~~~~~~---~g~------~~~-~~~~~~~~~C~~Cg~C~~~CP~~i~~~~~i 68 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRT---SYRTRLIIRKAL---LGL------KDE-VISDDDLWMCTTCYTCQERCPRDVKITDII 68 (144)
T ss_pred ccccCCCCCcCcCCCcccc---CCCHHHHHHHHH---ccc------hhh-hccCCCCCcCcCcCchhhhcCCCCCHHHHH
Confidence 5799999999999998642 245655544432 221 011 122358899999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCcchhhhcccccCCc
Q psy5769 297 AEIKKLLSGLVKKDKPGLDTAALHKIDANDK 327 (365)
Q Consensus 297 ~~lR~~l~~~~~~~~P~~~~~~L~nIer~Gn 327 (365)
..+|+.+... +..|.....++..+.+.|+
T Consensus 69 ~~~R~~~~~~--g~~~~~~~~~~~~~~~~g~ 97 (144)
T TIGR03290 69 KALRNLAAKK--GFMAKAHRKTASFVLKTGH 97 (144)
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence 9999988753 5566665555555555453
No 19
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.42 E-value=2.3e-13 Score=147.82 Aligned_cols=51 Identities=16% Similarity=0.378 Sum_probs=47.3
Q ss_pred CHHHHHHHhhhccCCCcccccCCC-CCCcCccEEEeCCccccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCR-EGICGSCAMNIGGVNTLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~-~~~CgsC~v~inG~~~laC~t~v~~~~~ 52 (365)
|||+|+...+ ...|+|+|+..|. .|.|+.|.|+|||++++||.|++.++|.
T Consensus 18 til~aa~~~g-i~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~ 69 (819)
T PRK08493 18 YILNVARRNG-IFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMN 69 (819)
T ss_pred HHHHHHHHcC-CccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCE
Confidence 6999999988 5689999999995 6999999999999999999999999984
No 20
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=99.42 E-value=2.2e-13 Score=137.48 Aligned_cols=96 Identities=24% Similarity=0.550 Sum_probs=78.7
Q ss_pred ccCCHHHHHhcccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccc
Q psy5769 203 YLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNC 282 (365)
Q Consensus 203 ~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C 282 (365)
..+++++.+..+.+..|++||.|.++||+|..+++++.||++.+..++.+.+++... + .....+|.|++|++|
T Consensus 9 ~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~--~-----~~~~~~~~C~~C~~C 81 (407)
T PRK11274 9 IRDTPEGEEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVT--E-----KTQLHLDRCLTCRNC 81 (407)
T ss_pred ccCChhhhHhHHHHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccc--h-----hhccccccCccccch
Confidence 457777767677788999999999999999888888899999998888877654211 1 112468999999999
Q ss_pred cccCcCCCChHHHHHHHHHHHhc
Q psy5769 283 TRTCPKGLNPGRAIAEIKKLLSG 305 (365)
Q Consensus 283 ~~vCP~gI~~~~~I~~lR~~l~~ 305 (365)
..+||++|++.++|..+|+.+.+
T Consensus 82 ~~~CP~~v~~~~li~~~r~~~~~ 104 (407)
T PRK11274 82 ETTCPSGVQYGRLLDIGRKVVEE 104 (407)
T ss_pred hhhCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998887764
No 21
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=99.39 E-value=2.4e-13 Score=127.69 Aligned_cols=68 Identities=32% Similarity=0.635 Sum_probs=57.3
Q ss_pred ccccccc--cccccccCcCCCChHHHHHHHHHHHhcccccCCCCcch-hhhcccccCCccceeccCCCCccccccCcChH
Q psy5769 272 SVYRCHT--IMNCTRTCPKGLNPGRAIAEIKKLLSGLVKKDKPGLDT-AALHKIDANDKVSKIYPLPHMYVVKDLVPDMN 348 (365)
Q Consensus 272 ~l~~Ct~--Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~~~~P~~~~-~~L~nIer~Gn~i~i~PL~~~~viRDL~vd~~ 348 (365)
.-|+|-. ||.|. ++.++.|.+++ +.+..+.. + .++++||++++++|||+||++
T Consensus 49 fr~sCR~gICGSCa----------------------m~ING~prLAC~t~~~~~~~-~-~i~iePL~~fpVIkDLVVD~~ 104 (234)
T COG0479 49 FRRSCREGICGSCA----------------------MNINGKPRLACKTLMKDLEE-G-VITIEPLPNFPVIRDLVVDME 104 (234)
T ss_pred hhhhccCCcCCcce----------------------eEECCccccchhchhhhccC-C-ceEEEECCCCCceeeeeeccH
Confidence 3467888 88886 45689999885 44666653 2 799999999999999999999
Q ss_pred HHHHHHHhcCCcccC
Q psy5769 349 NFYAQYKSIQPWLPR 363 (365)
Q Consensus 349 ~f~~~~~~~~p~~~~ 363 (365)
.||++|++|+|||++
T Consensus 105 ~f~~~~~~ikp~~~~ 119 (234)
T COG0479 105 EFYEKLRKIKPYLIR 119 (234)
T ss_pred HHHHhhhccccceec
Confidence 999999999999986
No 22
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=99.30 E-value=1.3e-12 Score=133.17 Aligned_cols=82 Identities=21% Similarity=0.418 Sum_probs=63.4
Q ss_pred cccchhcccCCcccccCCCceeCC-----cccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCc
Q psy5769 213 LDGLYECILCACCSTSCPSYWWNG-----EKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCP 287 (365)
Q Consensus 213 l~~~~~CI~CG~C~s~CP~~~~~~-----~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP 287 (365)
+.++..||+||.|..+||+|...+ ..|.||++.+... ..++ +... .+..|.|+.||+|..+||
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~--~~~g--------~~~~--~~~~~~C~~Cg~C~~vCP 356 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSP--LLGG--------YTDY--KHLPYLSSLCGACREVCP 356 (432)
T ss_pred hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHH--Hhcc--------cccc--cccCccchhhhhhhccCC
Confidence 667899999999999999997543 3578998765432 1221 1111 235799999999999999
Q ss_pred CCCChHHHHHHHHHHHhcc
Q psy5769 288 KGLNPGRAIAEIKKLLSGL 306 (365)
Q Consensus 288 ~gI~~~~~I~~lR~~l~~~ 306 (365)
++|++.++|..+|+.+.+.
T Consensus 357 ~gI~~~~li~~~R~~~~~~ 375 (432)
T TIGR00273 357 VKIPLPELIREHRSDKVEK 375 (432)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 23
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.29 E-value=7.7e-13 Score=111.02 Aligned_cols=59 Identities=37% Similarity=0.733 Sum_probs=46.0
Q ss_pred hhhccccCCCCCCCCcchhhhhhhccccc-------------c-----------------------------------CC
Q psy5769 124 TFAIYRWNPDKPDEKPTMQEYKVDLNNKI-------------D-----------------------------------AN 155 (365)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-----------------------------------~~ 155 (365)
+|+|+||+|+...++|.+|+|+|+..... | ..
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~~ 80 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDLI 80 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGCT
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhcc
Confidence 47899999987667999999999998611 0 01
Q ss_pred C---CcEEEeecCCCCccccccccchHHHH
Q psy5769 156 D---KVSKIYPLPHMYVVKDLVPDMNNFYA 182 (365)
Q Consensus 156 ~---~~~~IePL~~fpVIkDLvVD~~~ff~ 182 (365)
+ +.|+||||+|||||||||||+++||+
T Consensus 81 ~~~~~~i~IePL~~fpVirDLvVD~~~f~e 110 (110)
T PF13085_consen 81 EKFGNVITIEPLPNFPVIRDLVVDMSPFFE 110 (110)
T ss_dssp TSETBEEEEEESTTSBEEETTEEETHHHHH
T ss_pred CCCcceEEEEECCCCCcceeCceeChHHcC
Confidence 1 36999999999999999999999996
No 24
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=99.28 E-value=1e-12 Score=131.36 Aligned_cols=82 Identities=22% Similarity=0.473 Sum_probs=64.1
Q ss_pred cccchhcccCCcccccCCCceeC-----CcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCc
Q psy5769 213 LDGLYECILCACCSTSCPSYWWN-----GEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCP 287 (365)
Q Consensus 213 l~~~~~CI~CG~C~s~CP~~~~~-----~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP 287 (365)
+.+...||+||+|..+||+|..- +..|.||.+.+..... ++ ++. ..+..+.|+.||+|.+|||
T Consensus 304 ~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~--~g--------~~~--~~~~~~~c~lcg~C~evCP 371 (459)
T COG1139 304 FREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPIL--GG--------YDA--AGDLPYACSLCGACTEVCP 371 (459)
T ss_pred HHHHHHhhcchHhhhcChhhhhccCeecccccCCcccceecchh--cc--------hhh--ccccchhhccccCCCCcCC
Confidence 44568899999999999999743 3468899886655432 11 111 2357899999999999999
Q ss_pred CCCChHHHHHHHHHHHhcc
Q psy5769 288 KGLNPGRAIAEIKKLLSGL 306 (365)
Q Consensus 288 ~gI~~~~~I~~lR~~l~~~ 306 (365)
++|++.++|.++|+...+.
T Consensus 372 v~Ipl~eli~~lR~~~~~~ 390 (459)
T COG1139 372 VKIPLPELIRKLRRVAAES 390 (459)
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 9999999999999988765
No 25
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.28 E-value=2e-13 Score=143.22 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=47.3
Q ss_pred CHHHHHHHhhhccCCCcccccCC-CCCCcCccEEEeCCccccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSC-REGICGSCAMNIGGVNTLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C-~~~~CgsC~v~inG~~~laC~t~v~~~~~ 52 (365)
|||+|+++.+ ...|+|||..+- +.+.|.+|.|+|||+.+.||+|.+.++|.
T Consensus 22 tiL~a~~~~g-I~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~ 73 (978)
T COG3383 22 TILRAANRNG-IEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMV 73 (978)
T ss_pred HHHHHHHhcC-CcccceeccCCCCcccccceEEEEecCceeccccccccCCcE
Confidence 6899999988 679999999996 77999999999999999999999999983
No 26
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.25 E-value=4.3e-12 Score=119.69 Aligned_cols=50 Identities=26% Similarity=0.404 Sum_probs=43.3
Q ss_pred CHHHHHHHhhhccCCCcccccC-CCCCCcCccEEEeCCcc--cccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRS-CREGICGSCAMNIGGVN--TLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~-C~~~~CgsC~v~inG~~--~laC~t~v~~~~ 51 (365)
|||+|+.+.+ ...|++++..+ |..|.||.|.|+|||.. ++||.|+|.++|
T Consensus 20 til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm 72 (234)
T PRK07569 20 TLLEAAREAG-IPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGM 72 (234)
T ss_pred HHHHHHHHcC-CCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCC
Confidence 6999999987 45788887655 67999999999999975 569999999998
No 27
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=99.20 E-value=2.7e-11 Score=116.76 Aligned_cols=56 Identities=46% Similarity=0.826 Sum_probs=46.7
Q ss_pred ccccCCCCcch-hhhcccccCCccceeccCCCCccccccCcChHHHHHHHHhcCCcccC
Q psy5769 306 LVKKDKPGLDT-AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363 (365)
Q Consensus 306 ~~~~~~P~~~~-~~L~nIer~Gn~i~i~PL~~~~viRDL~vd~~~f~~~~~~~~p~~~~ 363 (365)
+.+++.|.+++ +.+.++. ++.++++||++|+|+|||+||++.|+++|++++|||++
T Consensus 106 m~ING~p~LAC~t~v~~~~--~~~i~iePl~~fpVirDLvVD~~~f~~klk~v~p~l~~ 162 (276)
T PLN00129 106 MNIDGKNTLACLTKIDRDE--SGPTTITPLPHMFVIKDLVVDMTNFYQQYKSIEPWLKT 162 (276)
T ss_pred eEECCcccccccccHhhcC--CCcEEEEECCCCCeeeecccccHHHHHHHHhccccccC
Confidence 44678898884 4455553 24688999999999999999999999999999999985
No 28
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=99.10 E-value=2.5e-11 Score=128.70 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=44.8
Q ss_pred CHHHHHHHhhhccCCCcccccCC-CCCCcCccEEEeCCc---cccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSC-REGICGSCAMNIGGV---NTLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C-~~~~CgsC~v~inG~---~~laC~t~v~~~~~ 52 (365)
|||+|+...+ ...|+|+|.... ..|.|+.|.|+|+|. .+.||.|++.++|.
T Consensus 15 ~il~a~~~~g-i~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~ 69 (603)
T TIGR01973 15 TVLQACLSAG-IEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMK 69 (603)
T ss_pred HHHHHHHHcC-CCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCE
Confidence 6899999988 468999998876 579999999999996 57899999999994
No 29
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.10 E-value=2.5e-11 Score=116.92 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=46.2
Q ss_pred CHHHHHHHhhhccCCCcccccCC-CCCCcCccEEEeCCc--cccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSC-REGICGSCAMNIGGV--NTLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C-~~~~CgsC~v~inG~--~~laC~t~v~~~~~ 52 (365)
|||||....+ ...|+|+|.... ..|.|+.|.|+|+|+ .+.||+|++.++|.
T Consensus 86 TILeAAr~~G-I~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~ 139 (297)
T PTZ00305 86 NLLEVLEREG-IRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMS 139 (297)
T ss_pred hHHHHHHHcC-CCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCE
Confidence 7999999998 679999999988 579999999999997 56799999999993
No 30
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=99.09 E-value=1e-10 Score=117.49 Aligned_cols=80 Identities=25% Similarity=0.476 Sum_probs=60.6
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHH-HHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChH
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVL-MQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPG 293 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l-~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~ 293 (365)
.+..||+||.|.++||++..++ .|.||..+ .+..++..+. + .....+++.|+.|++|..+||++|++.
T Consensus 5 ~~~~Ci~Cg~C~~~CP~~~~~~-~~~g~~~~~~~~~~~~~~~------~----~~~~~~~~~C~~C~~C~~~CP~~i~~~ 73 (396)
T PRK11168 5 SFDSCIKCTVCTTACPVARVNP-LYPGPKQAGPDGERLRLKD------G----ALYDESLKYCSNCKRCEVACPSGVKIG 73 (396)
T ss_pred chhhcCCCCCCCccCCCcccCC-CCCChhhhccHHHHHhccc------h----hhcCCCCCcCcCcCccCcccCCCCCHH
Confidence 4678999999999999998653 46777665 2333332210 0 112358999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy5769 294 RAIAEIKKLLSG 305 (365)
Q Consensus 294 ~~I~~lR~~l~~ 305 (365)
++|..+|+...+
T Consensus 74 ~~i~~~r~~~~~ 85 (396)
T PRK11168 74 DIIQRARAKYVT 85 (396)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 31
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=99.03 E-value=2.9e-11 Score=131.60 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=44.7
Q ss_pred CHHHHHHHhhhccCCCcccccCC-CCCCcCccEEEeCCcc--ccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSC-REGICGSCAMNIGGVN--TLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C-~~~~CgsC~v~inG~~--~laC~t~v~~~~~ 52 (365)
|||+|+...+ ...|+|+|.... +.|.|..|.|+|||.+ +.||.|++.++|.
T Consensus 18 ~il~a~~~~g-~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~ 71 (776)
T PRK09129 18 MVIEAADKAG-IYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMK 71 (776)
T ss_pred HHHHHHHHcC-CCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCE
Confidence 6999999998 468999998776 5789999999999975 6799999999994
No 32
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=99.02 E-value=2e-10 Score=108.85 Aligned_cols=56 Identities=20% Similarity=0.495 Sum_probs=46.6
Q ss_pred ccccCCCCcch-hhhcccccCCccceeccCCCCccccccCcChHHHHHHH-HhcCCcccC
Q psy5769 306 LVKKDKPGLDT-AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQY-KSIQPWLPR 363 (365)
Q Consensus 306 ~~~~~~P~~~~-~~L~nIer~Gn~i~i~PL~~~~viRDL~vd~~~f~~~~-~~~~p~~~~ 363 (365)
+..++.|.++. +.+.++. ++.+.++||++++|+|||+||++.|++++ ++++|||++
T Consensus 67 m~ING~~~LAC~t~v~~~~--~~~i~iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~ 124 (239)
T PRK13552 67 MVINGRPTLACRTLTSDYP--DGVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIHT 124 (239)
T ss_pred eEECCeEhhhhhccHhhcC--CCcEEEEECCCCCcceeCccccHHHHHHHHHhhcCcccc
Confidence 44678888884 4466653 23689999999999999999999999999 899999975
No 33
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=99.02 E-value=2.2e-10 Score=114.13 Aligned_cols=85 Identities=24% Similarity=0.511 Sum_probs=68.7
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChH
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPG 293 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~ 293 (365)
..+..|++||.|.++||++..+ +..+|++.+...+.....+... .+. ....+|.|++|++|.+.||.+|++.
T Consensus 6 ~~~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr~~~~r~~~~~~~~~-~~~-----~~~~~~~C~~C~~C~~~CP~~i~~~ 77 (388)
T COG0247 6 ESLDKCVHCGFCTNVCPSYRAT--EALSPRGRIVLVREVLRGKAPG-DEE-----VYEALDTCLACGACATACPSGIDIG 77 (388)
T ss_pred HHHHhcCCCCcccCcCCCcccc--CCCCCchHHHHHHHHHhCCCcc-hhh-----hHHHHHhCcCccchHhhCCCCCcHH
Confidence 3467899999999999999865 6789999998888766544320 011 1236899999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy5769 294 RAIAEIKKLLSGL 306 (365)
Q Consensus 294 ~~I~~lR~~l~~~ 306 (365)
+++..+|+...+.
T Consensus 78 ~~~~~~r~~~~~~ 90 (388)
T COG0247 78 DLIREARRKLAKG 90 (388)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 34
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.01 E-value=8.5e-11 Score=125.33 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=46.7
Q ss_pred CHHHHHHHhhhccCCCcccccCC-CCCCcCccEEEeCC--cccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSC-REGICGSCAMNIGG--VNTLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C-~~~~CgsC~v~inG--~~~laC~t~v~~~~ 51 (365)
|||+|....+ ...|+|||...| ..|.|+.|.|+|+| +++.||.|++.++|
T Consensus 18 tvLqAa~~aG-i~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM 70 (693)
T COG1034 18 TVLQAAREAG-IDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGM 70 (693)
T ss_pred HHHHHHHHcC-CCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCe
Confidence 6899999999 579999999999 55999999999999 89999999999998
No 35
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.99 E-value=5.4e-11 Score=129.97 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=44.4
Q ss_pred CHHHHHHHhhhccCCCcccccC-CCCCCcCccEEEeCCcc--cccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRS-CREGICGSCAMNIGGVN--TLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~-C~~~~CgsC~v~inG~~--~laC~t~v~~~~ 51 (365)
|||+|+...+ ...|+|+|... +..|.|+.|.|+|||.+ +.||.|++.++|
T Consensus 21 til~aa~~~g-i~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm 73 (797)
T PRK07860 21 LVIRAAELLG-IQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGM 73 (797)
T ss_pred hHHHHHHHcC-CCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCc
Confidence 7999999987 46899999987 47899999999999975 559999999998
No 36
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.98 E-value=5.1e-11 Score=128.18 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=45.5
Q ss_pred CHHHHHHHhhhccCCCcccccCC-CCCCcCccEEEeCCc---cccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSC-REGICGSCAMNIGGV---NTLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C-~~~~CgsC~v~inG~---~~laC~t~v~~~~~ 52 (365)
|||+|....+ ...|+|||...- ..|.|+.|.|+|+|. ++.||.|++.++|.
T Consensus 18 til~a~~~~g-i~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~ 72 (687)
T PRK09130 18 TLLQACEAAG-AEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMV 72 (687)
T ss_pred HHHHHHHHcC-CCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCE
Confidence 7999999998 568999999887 579999999999986 67899999999983
No 37
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=98.95 E-value=6.4e-10 Score=112.03 Aligned_cols=80 Identities=25% Similarity=0.465 Sum_probs=56.8
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHH-HHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChH
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLM-QAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPG 293 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~-~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~ 293 (365)
.+..||+||.|+++||++..++ .|.||.... +..+..+.. . + . -.+.++.|++|++|..+||++|++.
T Consensus 3 ~~~~Ci~Cg~C~~~Cp~~~~~~-~~~g~~~~~~~~~~~~l~~------~--~-~-~~~~~~~C~~C~~C~~~CP~~i~~~ 71 (397)
T TIGR03379 3 SFESCIKCTVCTVYCPVAKANP-LYPGPKQAGPDGERLRLKS------A--E-L-YDEALKYCTNCKRCEVACPSDVKIG 71 (397)
T ss_pred chhhCCCCCCCcccCcCccccC-CccCcccCCcHHHHHhccc------c--h-h-cccccccCcCcCccchhcCCCCCHH
Confidence 3578999999999999998653 355654310 000110000 0 0 0 1247899999999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy5769 294 RAIAEIKKLLSG 305 (365)
Q Consensus 294 ~~I~~lR~~l~~ 305 (365)
++|.++|+.+.+
T Consensus 72 ~~i~~~R~~~~~ 83 (397)
T TIGR03379 72 DIIARARNKYQK 83 (397)
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
No 38
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.90 E-value=2.2e-09 Score=102.10 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=31.2
Q ss_pred cccccCCccccccccccchhhHHHHhhhhhhccC
Q psy5769 54 SKIYPLPHMYVVKDLVPDMNNFYAQYKSIQRHLG 87 (365)
Q Consensus 54 ~~~~p~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ 87 (365)
++||||++|||||||+||++.||++++++++.+.
T Consensus 89 ~~iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~ 122 (244)
T PRK12385 89 MKVEALANFPIERDLVVDMTHFIESLEAIKPYII 122 (244)
T ss_pred eEEeeCCCCCeeeeCeeecHHHHHHHHHhcCeee
Confidence 3799999999999999999999999999987664
No 39
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.87 E-value=2e-09 Score=118.47 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=41.1
Q ss_pred CHHHHHHHhhhccCCCcccccCC-CCCCcCccEEEe-----CC--ccccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSC-REGICGSCAMNI-----GG--VNTLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C-~~~~CgsC~v~i-----nG--~~~laC~t~v~~~~~ 52 (365)
|||+|+...+ ...|++|+.... ..|.|+.|.|+| +| +.++||.|++.++|.
T Consensus 18 til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~gm~ 76 (847)
T PRK08166 18 NLLEACLSLG-IDIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDGTF 76 (847)
T ss_pred HHHHHHHHcC-CCCCccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCCCCCE
Confidence 6999999988 457877766554 479999999999 23 478899999999983
No 40
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.87 E-value=1.5e-09 Score=103.45 Aligned_cols=56 Identities=23% Similarity=0.538 Sum_probs=47.7
Q ss_pred ccccCCCCcch-hhhcccccCCccceeccCCCCccccccCcChHHHHHHHHhcCCcccCC
Q psy5769 306 LVKKDKPGLDT-AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRS 364 (365)
Q Consensus 306 ~~~~~~P~~~~-~~L~nIer~Gn~i~i~PL~~~~viRDL~vd~~~f~~~~~~~~p~~~~~ 364 (365)
+.+++.|.++. +.+..+ +..++++||++++|+|||+||++.|++++++++|||+++
T Consensus 73 m~ING~p~LAC~t~v~~~---~~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~ 129 (249)
T PRK08640 73 MVINGKPRQACTALIDQL---EQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPID 129 (249)
T ss_pred eEECCccchhhhChHHHc---CCcEEEEECCCCCccccCcEEChHHHHHHHhhCCccccC
Confidence 45688898884 446555 456899999999999999999999999999999999854
No 41
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.85 E-value=2.1e-09 Score=101.69 Aligned_cols=56 Identities=32% Similarity=0.646 Sum_probs=46.3
Q ss_pred ccccCCCCcch-hhhcccccCCccceeccCCCCccccccCcChHHHHHHHHhcCCcccCC
Q psy5769 306 LVKKDKPGLDT-AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRS 364 (365)
Q Consensus 306 ~~~~~~P~~~~-~~L~nIer~Gn~i~i~PL~~~~viRDL~vd~~~f~~~~~~~~p~~~~~ 364 (365)
+..++.|.++. +.+.++. ..+.++||++++++|||+||++.|+++|++++|||+++
T Consensus 66 ~~iNG~~~LaC~t~~~~~~---~~i~iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~ 122 (235)
T PRK12575 66 MNINGRNGLACLTNMQALP---REIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLIND 122 (235)
T ss_pred eEECCeEcchhhCcHhHcC---CCEEEeECCCCCccccceecCHHHHHHHHhccCccccC
Confidence 44577888884 4466552 35899999999999999999999999999999999753
No 42
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=98.84 E-value=3.8e-10 Score=84.18 Aligned_cols=61 Identities=26% Similarity=0.599 Sum_probs=33.9
Q ss_pred hcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 218 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
.|++||.|+.+||++..++ ..|..+++.+... . .+.+.....+|.|+.||.|..+||.+||
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~---~~~~~~~~~~~~~--~--------~~~~~~~~~~~~C~~Cg~C~~~CP~~l~ 61 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATP---DEPRSPMRAIYLG--K--------IDEISESHAASLCIGCGLCESVCPQGLD 61 (61)
T ss_dssp T----STTGGGSHHHHHCT---TTHHHHHHHHHHC--H--------CHTTHHHTTTTT--S--HHHHH-TT---
T ss_pred CCCCCCcCcccCCCccccC---ccHHHHHHHHHHh--c--------chhhhhCcccccCcCcCcCcccccCCCc
Confidence 4999999999999998654 2477777666551 1 1111112579999999999999999986
No 43
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=98.84 E-value=1e-09 Score=80.54 Aligned_cols=56 Identities=34% Similarity=0.818 Sum_probs=25.8
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+..||+||.|+++||++... ..+....++.... .+.. ..|.|++||+|+++||++|
T Consensus 2 ~~~Ci~Cg~C~~~CP~~~~~-------------~~~~~~~~~~~~~-~~~~-----~~~~C~~C~~C~~~CP~~I 57 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVYRNT-------------GRFSHPPRDRRSA-VLRE-----EAWSCTTCGACSEVCPVGI 57 (57)
T ss_dssp HHC--S-SHHHHCSHHHHHH-------------HHHHTSTTS--HH-HHHH-----HHGG-----HHHHH-TT--
T ss_pred HHHccCccChHHHChhhhcc-------------cccccCcchhHHH-hhcc-----cccCCcCcCCccCcCcccc
Confidence 57899999999999976421 1222222322111 1111 2399999999999999987
No 44
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.71 E-value=1.5e-08 Score=100.34 Aligned_cols=56 Identities=29% Similarity=0.495 Sum_probs=41.3
Q ss_pred ccEEEeCC-cccccccccccccccccccccCCccccccccccchhhHHHHhhhhhhccC
Q psy5769 30 SCAMNIGG-VNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQRHLG 87 (365)
Q Consensus 30 sC~v~inG-~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ 87 (365)
+|...|.. ..++. +.-.+...+++||||++|||||||+||++.||++++++++.+.
T Consensus 71 aC~t~v~~~~~~~~--~~~~~~~~~i~iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~ 127 (329)
T PRK12577 71 ACKENVGSELARLS--DSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVS 127 (329)
T ss_pred Ccccchhhhhcccc--ccccCCCCeEEEEECCCCCccccceeccHHHHHHHHhccCccc
Confidence 68888863 22221 1111112478999999999999999999999999999987664
No 45
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=98.71 E-value=5.5e-09 Score=103.71 Aligned_cols=91 Identities=19% Similarity=0.334 Sum_probs=57.6
Q ss_pred cchhcccCCcccccCCCceeCC--cc------cCCHHHHHHHHHH------Hh---ccCChhHHHHHhh--------hcC
Q psy5769 215 GLYECILCACCSTSCPSYWWNG--EK------YLGPAVLMQAYRW------II---DSRDEKTADRLNQ--------LKD 269 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~--~~------~lgP~~l~~~~r~------~~---d~rd~~~~erl~~--------~~~ 269 (365)
...+||.||.|+.+||+..... +. +.|.+......-+ .. +.|.. ..+|+.. +.+
T Consensus 224 ~~~rCi~Cg~C~~~CPtC~C~~~~d~~~~~~~~~ger~r~Wdsc~~~~ft~~agGhn~R~t-~~~R~R~r~~hK~~~~~~ 302 (344)
T PRK15055 224 YDSRCIACGRCNFVCPTCTCFTMQDIFYKENPKRGERRRVWASCMVDGFTDMAGGHGFRKK-KGERMRFKVLHKVYDYKK 302 (344)
T ss_pred HHhhCccCccccccCCceEeeccccccccCCCCcceeeeEeeeeeccCcccccCCCCCCcc-HHHHHHHHhhhhhccccc
Confidence 3569999999999999953211 11 1222222111110 11 22221 1233321 223
Q ss_pred CCccccccccccccccCcCCCChHHHHHHHHHHHhcc
Q psy5769 270 PFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGL 306 (365)
Q Consensus 270 ~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~ 306 (365)
..+.+.|++||+|..+||++|++.++|..+|+.+.+.
T Consensus 303 ~~g~~~CvgCGrC~~~CP~~I~i~~~i~~lr~~~~~~ 339 (344)
T PRK15055 303 RFGYHMCVGCGRCDDRCPEYISFSNCINKLTDAVEEV 339 (344)
T ss_pred ccchhhCcCcCccccccCCCCCHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999999999988654
No 46
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.68 E-value=2.4e-08 Score=95.32 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=44.6
Q ss_pred ccccCCC------Ccch-hhhcccccCCccceeccCC--CCccccccCcChHHHHHHHHhcCCcccC
Q psy5769 306 LVKKDKP------GLDT-AALHKIDANDKVSKIYPLP--HMYVVKDLVPDMNNFYAQYKSIQPWLPR 363 (365)
Q Consensus 306 ~~~~~~P------~~~~-~~L~nIer~Gn~i~i~PL~--~~~viRDL~vd~~~f~~~~~~~~p~~~~ 363 (365)
+.+++.| .++. +.+..+. .|+.++++||+ +++|+|||+||++.| +++++++|||++
T Consensus 68 m~ING~p~~~~~~~LAC~t~~~~~~-~~~~i~iePl~~~~fpvikDLvVD~~~~-~~~~~~~p~l~~ 132 (250)
T PRK07570 68 LVINGRPHGPDRGTTTCQLHMRSFK-DGDTITIEPWRAAAFPVIKDLVVDRSAL-DRIIQAGGYVSV 132 (250)
T ss_pred eEECCccCCCCcccchhhhhhhhcC-CCCeEEEEECCCCCCCeeeeceeecHHH-HHHHhcCCeEec
Confidence 4457888 5663 3344443 34679999998 999999999999997 999999999985
No 47
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.67 E-value=3.1e-08 Score=93.38 Aligned_cols=47 Identities=45% Similarity=0.687 Sum_probs=37.8
Q ss_pred ccEEEeCCcccccccccccccccccccccCCccccccccccchhhHHHHhhhhhhccC
Q psy5769 30 SCAMNIGGVNTLACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQRHLG 87 (365)
Q Consensus 30 sC~v~inG~~~laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ 87 (365)
+|...|.-- .+ +. ++||||++|||||||+||++.||++++.++..+-
T Consensus 71 aC~t~~~~~-----~~---~~---~tiepl~~~~vikDLvvD~~~~~~~~~~~~~~~~ 117 (232)
T PRK05950 71 ACITPISDL-----KK---GK---IVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLI 117 (232)
T ss_pred chhChHhHc-----CC---Ce---EEEEECCCCCeeeeceeehHHHHHHHHhccCeec
Confidence 687777653 11 22 4799999999999999999999999999986653
No 48
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.64 E-value=1.8e-08 Score=94.16 Aligned_cols=33 Identities=52% Similarity=0.767 Sum_probs=30.5
Q ss_pred ccccCCccccccccccchhhHHHHhhhhhhccC
Q psy5769 55 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQRHLG 87 (365)
Q Consensus 55 ~~~p~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ 87 (365)
+||||++|||||||+||++.||++++++++.+.
T Consensus 81 ~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~ 113 (220)
T TIGR00384 81 KIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLI 113 (220)
T ss_pred EEeeCCCCceeeeeeechHHHHHHHHhcCCeec
Confidence 489999999999999999999999999997763
No 49
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=98.62 E-value=2.8e-08 Score=101.82 Aligned_cols=74 Identities=22% Similarity=0.387 Sum_probs=54.9
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChH
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPG 293 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~ 293 (365)
.....||.||.|..+||+. +.|..+.++... . +++.. ...+.+.|+.||.|+.+||.+|++.
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~-------l~p~~l~~~~~~---~-------~~~~~-~~~~~~~C~~Cg~C~~vCP~~i~l~ 421 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMN-------LLPQQLNWLALA---D-------EFDEA-EEHNLMDCIECGCCSYVCPSNIPLV 421 (435)
T ss_pred ccCCcCcCccchhhhCccc-------hhhHHHHHHhhh---c-------ccchh-hcCCCCcCCcCCCcccccCCCCCHH
Confidence 4568999999999999986 346555443221 0 11111 1246799999999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy5769 294 RAIAEIKKLLSG 305 (365)
Q Consensus 294 ~~I~~lR~~l~~ 305 (365)
+.|...|+.+.+
T Consensus 422 ~~ir~~k~~l~~ 433 (435)
T TIGR01945 422 QYIRQAKAKLRA 433 (435)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 50
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.53 E-value=5.4e-08 Score=77.54 Aligned_cols=51 Identities=24% Similarity=0.478 Sum_probs=39.0
Q ss_pred CHHHHHHHhhhccCCCcccc----c-CCCCCCcCccEEEeCCcc-ccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFR----R-SCREGICGSCAMNIGGVN-TLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~----~-~C~~~~CgsC~v~inG~~-~laC~t~v~~~~~ 52 (365)
|||+||.+.+ ...|++++. . .|..|.|+.|.|+|||++ ++||.|++.++|.
T Consensus 20 til~al~~~g-i~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~ 76 (82)
T PF13510_consen 20 TILEALLAAG-IDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMV 76 (82)
T ss_dssp BHHHHHHHTT---B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEE
T ss_pred HHHHHHHHCC-CeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcE
Confidence 7999999998 457899996 3 489999999999999998 9999999999983
No 51
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=98.52 E-value=1.1e-07 Score=94.00 Aligned_cols=88 Identities=17% Similarity=0.375 Sum_probs=56.5
Q ss_pred chhcccCCcccccCCCceeCC--ccc---CCH---HH------HHHHHHHH---hccCChhHHHHHhh--------hcCC
Q psy5769 216 LYECILCACCSTSCPSYWWNG--EKY---LGP---AV------LMQAYRWI---IDSRDEKTADRLNQ--------LKDP 270 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~--~~~---lgP---~~------l~~~~r~~---~d~rd~~~~erl~~--------~~~~ 270 (365)
..+||.||.|+.+||+....+ +.+ -|. +. +...+... ++.|.. ..+|+.. +.+.
T Consensus 219 ~~rCi~C~~C~~~CPtC~Cf~i~D~~~~~~g~~geR~R~WDSC~~~~Ft~~agGhn~R~~-~~~R~R~r~~HKl~~~~~~ 297 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTCTCFSMQDVFYKDNPKAGERRRVWASCMVDGFTNMAGGHGFREK-KGQRMRFKVMHKVNDYKKR 297 (334)
T ss_pred HhhCCcCccccccCCceEeeEEEEecccCCCCceEEEEEecccCCcchhhhcCCCCCCCC-HHHHHHHHHhhhccccccc
Confidence 579999999999999986421 111 111 11 01111111 122322 1233321 2345
Q ss_pred CccccccccccccccCcCCCChHHHHHHHHHHHh
Q psy5769 271 FSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLS 304 (365)
Q Consensus 271 ~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l~ 304 (365)
.+...|++||+|.++||++|++.++|..+|+.+.
T Consensus 298 fG~~~CvgCGrC~~~CP~~idi~~~i~~i~~~~~ 331 (334)
T TIGR02910 298 NGYHMCVGCGRCDDICPEYISFSNCINKLTAAVR 331 (334)
T ss_pred cCccccCCcCchhhhCCCCCCHHHHHHHHHHHHh
Confidence 6889999999999999999999999999998765
No 52
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=98.51 E-value=8.9e-08 Score=98.41 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=58.2
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccc--cccccccCcCCCCh
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHT--IMNCTRTCPKGLNP 292 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~--Cg~C~~vCP~gI~~ 292 (365)
....||+||.|..+||+. +-|..+++++... +. +..+ ..++..|.- ||.|+.|||+.|++
T Consensus 372 ~~~~CI~Cg~C~~vCP~~-------L~P~~l~ra~~~~----d~---~~~e----~~~~~~C~EedCG~CsyVCPskipL 433 (448)
T PRK05352 372 SERAMVPIGNYERVMPLD-------ILPTQLLRALIVG----DT---DEAQ----ALGALELDEEDLALCTFVCPGKYEY 433 (448)
T ss_pred CCcceeecCcHhhcCCCC-------CCHHHHHHHHHcC----CH---HHHH----HcCchhcCccccCCCccCCCCCchH
Confidence 346899999999999994 7898888877541 11 1111 258999999 99999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy5769 293 GRAIAEIKKLLSG 305 (365)
Q Consensus 293 ~~~I~~lR~~l~~ 305 (365)
.+.|+..+..+.+
T Consensus 434 ~q~iR~~k~~~~~ 446 (448)
T PRK05352 434 GPILRDGLDRIEK 446 (448)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988877653
No 53
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=98.42 E-value=1.5e-07 Score=101.45 Aligned_cols=73 Identities=21% Similarity=0.491 Sum_probs=52.4
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHH
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGR 294 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~ 294 (365)
....||.||.|..+||+. +.|..+.+..+. .+. +.+. ..+++.|+.||.|..+||.+|++..
T Consensus 368 ~e~~CI~CG~Cv~aCP~~-------llP~~l~~~~~~----~d~---~~~~----~~~~~~CieCG~C~~vCPs~Iplv~ 429 (695)
T PRK05035 368 PEQPCIRCGACADACPAS-------LLPQQLYWFAKA----EEH---DKAQ----EYNLFDCIECGACAYVCPSNIPLVQ 429 (695)
T ss_pred chhhcCCcccHHHHCCcc-------chhhhHHHhhhc----ccc---chhh----hcChhhccccCcccccCCCCCcHHH
Confidence 457899999999999987 345444332221 110 1111 2367899999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy5769 295 AIAEIKKLLSG 305 (365)
Q Consensus 295 ~I~~lR~~l~~ 305 (365)
.|...+..+..
T Consensus 430 ~~r~aK~~i~~ 440 (695)
T PRK05035 430 YYRQAKAEIRA 440 (695)
T ss_pred HHHHHHHHHHH
Confidence 99988776543
No 54
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=98.37 E-value=3.2e-07 Score=94.26 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=55.7
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccc--cccccccCcCCCCh
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHT--IMNCTRTCPKGLNP 292 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~--Cg~C~~vCP~gI~~ 292 (365)
....||.||.|..+||+. +-|..+.++.+. +| ++.+ ...++..|.. ||.|+.|||.+|++
T Consensus 371 ~~~aCI~CG~C~~vCPm~-------L~P~~L~~a~~~----~d------~d~a-~~lg~~ecieedCG~CsyVCPSki~l 432 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLD-------IPPTLLLKALIA----GD------FDKA-QRLGALEVDEEDFALCTFVDPSKYEY 432 (447)
T ss_pred CccceeECChHhhcCCCC-------CCHHHHHHHHHc----CC------HHHH-HHCCCcccCccccccCceECCCCchH
Confidence 346799999999999987 678888877754 11 2211 2358999998 99999999999999
Q ss_pred HHHHHHHHHHHh
Q psy5769 293 GRAIAEIKKLLS 304 (365)
Q Consensus 293 ~~~I~~lR~~l~ 304 (365)
.+.|+..-..+.
T Consensus 433 ~q~iR~~l~~~~ 444 (447)
T TIGR01936 433 GSIVRESLDRIE 444 (447)
T ss_pred HHHHHHHHHHHH
Confidence 999887655544
No 55
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=98.33 E-value=3.6e-07 Score=98.50 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=53.7
Q ss_pred HhcccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 211 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 211 ~~l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+......+|+.||.|..+||.... +....+...++. +..+ ....+.|+.||.|.++||.+|
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~l~----------i~~~I~~a~~G~-------~~~l--~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNELP----------IPEAMEAAAKGD-------LSKL--EDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCCcc----------hhHHHHHHhcCC-------hhhh--hhhhhhccchhHHhhhCCCCC
Confidence 334567899999999999998531 111122211111 1111 123689999999999999999
Q ss_pred ChHHHHHHHHHHHhcc
Q psy5769 291 NPGRAIAEIKKLLSGL 306 (365)
Q Consensus 291 ~~~~~I~~lR~~l~~~ 306 (365)
++.+++..+|+.+++.
T Consensus 459 pi~emi~~Ar~~~Vk~ 474 (781)
T PRK00941 459 PIVSMIEKAAQHRIKN 474 (781)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 9999999999988854
No 56
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.32 E-value=3.2e-07 Score=87.67 Aligned_cols=56 Identities=23% Similarity=0.445 Sum_probs=45.8
Q ss_pred cccCCCCcch-hhhcccccCCccceeccCCCCccccccCcChHHHHHHHHhcCCcccC
Q psy5769 307 VKKDKPGLDT-AALHKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPR 363 (365)
Q Consensus 307 ~~~~~P~~~~-~~L~nIer~Gn~i~i~PL~~~~viRDL~vd~~~f~~~~~~~~p~~~~ 363 (365)
..++.|.++. +.+..+.. +..++++||++++|+|||+||++.|+++|++++|||.+
T Consensus 64 ~InG~p~laC~t~~~~~~~-~~~itiepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~ 120 (251)
T PRK12386 64 EINGRPRLMCMTRMSTFDE-DETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPP 120 (251)
T ss_pred EECccEeccHHhHHHHhCC-CCeEEEccCCCCCccccceEEcHHHHHHHHhcCCcccC
Confidence 3577787774 33455532 35789999999999999999999999999999999974
No 57
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=98.27 E-value=5.3e-07 Score=97.09 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=53.8
Q ss_pred HhcccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 211 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 211 ~~l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+......+|+.||.|..+||+... .. .......++.. ..+. ...+.|+.||+|.++||.++
T Consensus 359 el~~~~~kCI~CG~Cv~aCP~~l~-------i~---e~i~~~~~G~~----~~l~-----~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 359 EFQELAAKCTDCGWCTRACPNSLR-------IK---EAMEAAKEGDF----SGLA-----DLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HHHHhhhcCCCCCcccccCCCCCc-------HH---HHHHHHhcCCh----hhhh-----hhHhhhhhhhHHhhhCCCCC
Confidence 334567899999999999998631 11 11122122110 1111 23589999999999999999
Q ss_pred ChHHHHHHHHHHHhccc
Q psy5769 291 NPGRAIAEIKKLLSGLV 307 (365)
Q Consensus 291 ~~~~~I~~lR~~l~~~~ 307 (365)
++.++|..+|+...+.+
T Consensus 420 pi~~mi~~a~~~~vk~~ 436 (731)
T cd01916 420 PIINMIEKAARERIKEE 436 (731)
T ss_pred ChHHHHHHHHHHHHhcc
Confidence 99999999999887543
No 58
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=98.22 E-value=7.8e-07 Score=95.92 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=51.4
Q ss_pred HhcccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 211 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 211 ~~l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+.+.....|+.||.|..+||.... .. .......++. +..+ ....+.|+.||+|.++||.+|
T Consensus 393 eLl~~~~kCI~CG~Cv~aCP~~l~-----i~-----e~i~~a~~G~-------l~~l--~~~~d~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 393 ELMELANKCTQCGNCVRTCPNSLR-----VD-----EAMAHAQKGD-------LSKL--EQLEEQCYACGRCEQACPKNI 453 (784)
T ss_pred HHhhhcccCCCcccchhhCCCCcc-----hH-----HHHHHHhcCC-------cccc--ccCHhhhhhhhHHhccCCCCC
Confidence 344567899999999999998631 11 1111111111 1111 113468999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q psy5769 291 NPGRAIAEIKKLLS 304 (365)
Q Consensus 291 ~~~~~I~~lR~~l~ 304 (365)
++.++|..+|+...
T Consensus 454 pIvemI~~Ar~~~v 467 (784)
T TIGR00314 454 PIISMITKAGEDRL 467 (784)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988654
No 59
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.21 E-value=7.9e-07 Score=91.47 Aligned_cols=71 Identities=20% Similarity=0.455 Sum_probs=52.4
Q ss_pred hcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCChHHHHH
Q psy5769 218 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIA 297 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~~~~I~ 297 (365)
.||+||.|.++||++ +-|..+....+. +...+. ..+.+..|..||.|..+||++|++...+.
T Consensus 366 sCi~C~~C~d~CP~~-------Llp~ql~~~a~~-----~~~~e~------~~~~l~dCIECg~Ca~vCPs~iplvq~~r 427 (529)
T COG4656 366 SCIRCSLCADACPVN-------LLPQQLYWFAKG-----EQHDEE------EEHNLLDCIECGACAYVCPSNIPLVQYFR 427 (529)
T ss_pred ccccHHHHHHhCccc-------cCHHHhhHHhhh-----hhhhHH------HHHHhhhhhhhCcchhcCCCCCCHHHHHH
Confidence 899999999999998 456554443332 110111 12468899999999999999999999999
Q ss_pred HHHHHHhcc
Q psy5769 298 EIKKLLSGL 306 (365)
Q Consensus 298 ~lR~~l~~~ 306 (365)
..++.+...
T Consensus 428 ~~Ka~i~~~ 436 (529)
T COG4656 428 QEKAEILAQ 436 (529)
T ss_pred HHHHHHHHh
Confidence 888766543
No 60
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=98.19 E-value=1.5e-06 Score=76.68 Aligned_cols=56 Identities=27% Similarity=0.522 Sum_probs=45.4
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCccccccccccc--ccccccccccCC
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKID--ANDKVSKIYPLP 60 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~--~~~~~~~~~p~~ 60 (365)
++||+|+.- . .-...+.+|.+|.||+|.|.|||+++.||.+++. ++.+.+|||.|.
T Consensus 20 ~Ll~~LR~~---l-gltg~K~gC~~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl~ 77 (148)
T TIGR03193 20 LLVDYLRDT---V-GLTGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLA 77 (148)
T ss_pred cHHHHHHHh---c-CCCCCCCCCCCCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCCC
Confidence 467777652 2 2467899999999999999999999999999994 455678899876
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.14 E-value=4.2e-06 Score=89.92 Aligned_cols=50 Identities=28% Similarity=0.446 Sum_probs=44.9
Q ss_pred CHHHHHHHhhhccCCCcccccC-CCCCCcCccEEEeCCcc--cccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRS-CREGICGSCAMNIGGVN--TLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~-C~~~~CgsC~v~inG~~--~laC~t~v~~~~ 51 (365)
|||+||...+ ...|++++... |.+|.|+.|.|+|||.+ ++||.|++.++|
T Consensus 20 ti~~a~~~~g-~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~Gm 72 (652)
T PRK12814 20 SILEAAASAG-ITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEGM 72 (652)
T ss_pred cHHHHHHHcC-CccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCCC
Confidence 7999999997 56899999765 78999999999999975 779999999998
No 62
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.10 E-value=2.1e-06 Score=83.33 Aligned_cols=56 Identities=29% Similarity=0.504 Sum_probs=44.4
Q ss_pred cCCCCcch-hhhcccc-cCCccceeccCCCCccccccCcChHHHHHHHHhcCCcccCC
Q psy5769 309 KDKPGLDT-AALHKID-ANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLPRS 364 (365)
Q Consensus 309 ~~~P~~~~-~~L~nIe-r~Gn~i~i~PL~~~~viRDL~vd~~~f~~~~~~~~p~~~~~ 364 (365)
++.|..++ +.+..+. ..|..++++||.+++++|||+||++.|+++|++++|||+++
T Consensus 71 NG~~~laC~t~v~~~~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~ 128 (279)
T PRK12576 71 NGEPRLACKTLVLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRA 128 (279)
T ss_pred CCcEeccccCcHHHhhcCCCCcEEEEECCCCceeecceechHHHHHHHHhccceeccC
Confidence 45565553 3344443 24567999999999999999999999999999999999753
No 63
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.01 E-value=3.7e-07 Score=66.45 Aligned_cols=53 Identities=23% Similarity=0.542 Sum_probs=29.1
Q ss_pred hcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 218 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
+||.||.|.++||+.....+...+. ............+.|+.||.|+.+||++
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 53 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGK-------------------KVVDKDNERRNAEKCIGCGACVKACPTG 53 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTC-------------------EECSECCESTTGGG--TTCHHHHHSTTT
T ss_pred CCCCcchHHHHCCccCeEccCcccc-------------------ccccccccCCCCCccccHhHHHHHcchh
Confidence 5999999999999986431111000 0000000112567899999999999987
No 64
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=98.00 E-value=5.9e-06 Score=82.63 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=52.0
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC-----
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK----- 288 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~----- 288 (365)
..+..|..|+.|...||++.... ++. + . .+..+. ..+|.|++||.|...||.
T Consensus 11 R~l~iC~~C~~C~~~CpvfPa~~-----~~~-----~--~------~~~d~~-----~la~lChnC~~C~~~CPy~pPHe 67 (372)
T TIGR02484 11 RVLNLCNSCGYCTGLCAVFPAAQ-----GRP-----D--L------TRGDLR-----HLAHLCHDCQSCWHDCQYAPPHA 67 (372)
T ss_pred HHhHhCcCcCCccccCCCccccc-----ccc-----c--c------CHHHHH-----HHHHHCcCcccccccCcCCCCcc
Confidence 34678999999999999996421 100 0 0 012222 248999999999999999
Q ss_pred -CCChHHHHHHHHHHHhcc
Q psy5769 289 -GLNPGRAIAEIKKLLSGL 306 (365)
Q Consensus 289 -gI~~~~~I~~lR~~l~~~ 306 (365)
+|++++++.++|....+.
T Consensus 68 f~v~~p~lma~~R~~~~~~ 86 (372)
T TIGR02484 68 FAINLPATLADVRRASYAE 86 (372)
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 889999999999987654
No 65
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=97.96 E-value=8.7e-07 Score=68.40 Aligned_cols=26 Identities=31% Similarity=0.741 Sum_probs=22.7
Q ss_pred hcCCCccccccccccccccCcCCCCh
Q psy5769 267 LKDPFSVYRCHTIMNCTRTCPKGLNP 292 (365)
Q Consensus 267 ~~~~~~l~~Ct~Cg~C~~vCP~gI~~ 292 (365)
+.+..+...|+.||+|+.+||.+|++
T Consensus 43 ~~~~~~~~~CVgCgrCv~~CP~~Idi 68 (69)
T PF13746_consen 43 LRDRYGEGDCVGCGRCVRVCPAGIDI 68 (69)
T ss_pred hhhhcCCccCCCcChHhhhcCCCCCc
Confidence 33556899999999999999999986
No 66
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=97.86 E-value=1.3e-05 Score=62.75 Aligned_cols=45 Identities=31% Similarity=0.649 Sum_probs=36.8
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeC------------------Ccccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIG------------------GVNTLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~in------------------G~~~laC~t~v~~~~ 51 (365)
|||+||...+ +.++++|+.|.||+|.|+|. +..+|||.+.+.+.+
T Consensus 19 ~ll~al~~~g------~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i 81 (84)
T cd00207 19 TLLDAAREAG------IDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGL 81 (84)
T ss_pred cHHHHHHHcC------CCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCc
Confidence 5788888754 33788999999999999997 567899999996543
No 67
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=97.81 E-value=1.5e-06 Score=62.86 Aligned_cols=52 Identities=21% Similarity=0.530 Sum_probs=25.2
Q ss_pred hcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 218 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+||.||.|..+||.....-.....+. . ...+ ....+.|++||+|..+||.++
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~-------------~------~~~~--~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEE-------------G------KPKM--VIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-S-------------S------STTS--EETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCcccccccC-------------C------ceEE--EEechhCcCcChhhhhCcCcC
Confidence 59999999999997753211110000 0 0111 124788999999999999874
No 68
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=97.80 E-value=1.8e-06 Score=62.26 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=20.4
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCc
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCP 287 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP 287 (365)
.+...|+.||.|+.+||+..... . .. .... .....+.|+.||+|.++||
T Consensus 4 id~~~C~~C~~C~~~CP~~~~~~--~-------------~~---------~~~~-~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 4 IDEDKCIGCGRCVKVCPADNAIA--I-------------DD---------GEKK-VEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp --TT------TTGGG-TT-------E-------------EE----------SSS-EEE-TTT--TTSHHHHH-T
T ss_pred cCcccCcCCcChHHHccchhHHH--h-------------hc---------cCCC-eEeCcccccccChhhhhCc
Confidence 34578999999999999821100 0 00 0000 1125788999999999999
No 69
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=97.77 E-value=1.9e-05 Score=79.38 Aligned_cols=72 Identities=17% Similarity=0.341 Sum_probs=51.6
Q ss_pred hcccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC---
Q psy5769 212 KLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK--- 288 (365)
Q Consensus 212 ~l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~--- 288 (365)
....+..|..|..|...||++... -. |...+. ..+. +....|+.||.|...||.
T Consensus 28 ~~r~~~iC~~Cr~C~~~CpvfP~l----------~~--r~~~~~------~d~~-----~~a~~C~~Cg~C~~~CP~apP 84 (389)
T PRK15033 28 VARQMQICNACRYCEGFCAVFPAM----------TR--RLEFGK------ADIH-----YLANLCHNCGACLHACQYAPP 84 (389)
T ss_pred HHHHhHhCCCCCCccccCCCchhh----------hh--hhcCCh------hhhH-----HHHHhCcCcccccccCcCCCC
Confidence 334578999999999999998421 00 100100 1111 234589999999999999
Q ss_pred ---CCChHHHHHHHHHHHhcc
Q psy5769 289 ---GLNPGRAIAEIKKLLSGL 306 (365)
Q Consensus 289 ---gI~~~~~I~~lR~~l~~~ 306 (365)
+|++++.+.++|....+.
T Consensus 85 hef~i~ip~~l~~~r~~sy~~ 105 (389)
T PRK15033 85 HEFAVNVPKAMAQVRLETYQE 105 (389)
T ss_pred cccCCCHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 70
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.69 E-value=3.8e-05 Score=71.73 Aligned_cols=56 Identities=25% Similarity=0.507 Sum_probs=44.7
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccc--cccccccccccCC
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKI--DANDKVSKIYPLP 60 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v--~~~~~~~~~~p~~ 60 (365)
|+||+|+.-. . -..-+.+|.+|.||+|.|.|||+++.||.+.+ .++++..|||=|.
T Consensus 70 tLLd~LR~~l---~-ltGtK~GC~~G~CGACTVlVdG~~v~SCl~la~~~~G~~ItTiEGL~ 127 (217)
T PRK11433 70 TLLDALREHL---H-LTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLG 127 (217)
T ss_pred cHHHHHHHhc---C-CCCCCCCCCCCCcCceEEEECCEEeeeeeeehhhcCCCEEEEeCCcC
Confidence 5788888632 1 12345789999999999999999999999998 6777777788776
No 71
>PRK13984 putative oxidoreductase; Provisional
Probab=97.64 E-value=5.5e-05 Score=80.41 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=28.8
Q ss_pred ccccccccccccccCcCCCChHHHHHHHHHHH
Q psy5769 272 SVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLL 303 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~l 303 (365)
..++|+.||.|..+||.++++.+.+..+|+..
T Consensus 183 ~~~~C~~Cg~C~~~CP~~~~i~~~~~~i~~~~ 214 (604)
T PRK13984 183 EAARCVECGICTDTCPAHMDIPQYIKAIYKDD 214 (604)
T ss_pred hhhhhcCCCcccccCCCCCCHHHHHHHHHcCC
Confidence 46899999999999999999999999988743
No 72
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=97.59 E-value=4.1e-05 Score=79.64 Aligned_cols=73 Identities=21% Similarity=0.383 Sum_probs=50.1
Q ss_pred cccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCCh
Q psy5769 213 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNP 292 (365)
Q Consensus 213 l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~ 292 (365)
.....+|..||-|+.+||... --|.++..+. ++ | ...|+. ....|..||+|.++||++|++
T Consensus 396 ~e~a~kc~~cG~C~~~CP~~l------~i~eam~~A~----~G-d---~~~l~~-----l~d~C~~C~rCEq~Cpk~ipi 456 (772)
T COG1152 396 MEYARKCTYCGNCMRACPNEL------DIPEAMEYAA----KG-D---FSKLED-----LHDVCIGCGRCEQVCPKNIPI 456 (772)
T ss_pred HHHHHhcccccchhccCCccc------chHHHHHHhh----cC-C---hHHHHH-----HHHHhhhhhhhhhhCcccCch
Confidence 345689999999999999753 2233333332 21 1 122332 345799999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy5769 293 GRAIAEIKKLLS 304 (365)
Q Consensus 293 ~~~I~~lR~~l~ 304 (365)
..+|.+.-+...
T Consensus 457 ~nm~~~a~~~~~ 468 (772)
T COG1152 457 LNMIEKAAQKRI 468 (772)
T ss_pred hhHHHHHHHHhh
Confidence 999987655443
No 73
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.53 E-value=1.8e-05 Score=71.64 Aligned_cols=57 Identities=26% Similarity=0.540 Sum_probs=34.7
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
...||.|+.|..+||+....=. ..+.. .+++ .+.. .. .-...+|+.||.|.++||++
T Consensus 54 ~~~CIgC~lCa~iCP~~aI~m~--~~~~~--------~~g~-----~~~~-~~-~In~grCIfCg~C~e~CPt~ 110 (172)
T COG1143 54 RDKCIGCGLCANICPANAITME--TAERK--------VDGR-----KKPK-RP-DINLGRCIFCGLCVEVCPTG 110 (172)
T ss_pred ccCCcchhHHHhhCCcCceEEE--EcccC--------CCCc-----cccc-cc-eeccccccccCchhhhCchh
Confidence 3459999999999999864200 00000 0110 0101 11 12578999999999999976
No 74
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.41 E-value=6.3e-05 Score=56.27 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=23.7
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK 288 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~ 288 (365)
...||.||.|+.+||.....- .... .. ..+ . .....|+.||.|..+||+
T Consensus 5 ~~~Ci~Cg~C~~~Cp~~~~~~-i~~~-------------~~-----~~~-~----v~~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 5 EDKCIGCGKCVRACPDGAIDA-IEVD-------------EG-----KKV-P----VNPDKCIGCGLCVKVCPV 53 (59)
T ss_dssp TTT----SCCCHHCCCCS-S--ECCT-------------TT-----TSS-E----CE-TT--S-SCCCCCSSS
T ss_pred cccccChhhHHhHcCccceee-EEec-------------CC-----eeE-E----eccccCcCcCcccccCCC
Confidence 478999999999999743210 0000 00 000 0 124689999999999995
No 75
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.38 E-value=0.00015 Score=64.76 Aligned_cols=55 Identities=16% Similarity=0.375 Sum_probs=41.5
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCcccccccccccc--cccccccccCC
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDA--NDKVSKIYPLP 60 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~~--~~~~~~~~p~~ 60 (365)
++||+|+.. . =..-+.+|..|.||+|.|.|||+++.||.+.+.. +.+.+|||=|.
T Consensus 27 ~Ll~~LR~~--g---ltgtK~GC~~G~CGACtVlvdg~~v~SCl~~a~~~~G~~V~TiEGl~ 83 (159)
T PRK09908 27 PLSELLREQ--G---LLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEA 83 (159)
T ss_pred cHHHHHHHc--C---CCCCCCCcCCCCCCCcEEEECCcEeehhHhhHHHhCCCEEEeecCCC
Confidence 467777742 1 2356789999999999999999999999999844 44445566654
No 76
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=97.38 E-value=0.00016 Score=56.03 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=24.8
Q ss_pred HHHHHHHhhhccCCCcccccCCCCCCcCccEEEeC
Q psy5769 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIG 36 (365)
Q Consensus 2 vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~in 36 (365)
||+||.+.+ -+...++|+.|.||+|.|+|.
T Consensus 19 ll~~~~~~~-----gi~i~~~C~~g~Cg~C~v~v~ 48 (78)
T PF00111_consen 19 LLDALERAG-----GIGIPYSCGGGGCGTCRVRVL 48 (78)
T ss_dssp HHHHHHHTT-----TTTSTTSSSSSSSSTTEEEEE
T ss_pred HHHHHHHcC-----CCCcccCCCCCccCCcEEEEe
Confidence 889988752 255779999999999999986
No 77
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=97.33 E-value=6.8e-05 Score=68.47 Aligned_cols=59 Identities=24% Similarity=0.451 Sum_probs=35.0
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.+...||.||.|..+||.....-.....+. ... ..+..+ ......|+.||.|+++||.+
T Consensus 59 ~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~---------~~~------~~~~~~--~id~~~Ci~Cg~Cv~aCP~~ 117 (183)
T TIGR00403 59 FEFDKCIACEVCVRVCPINLPVVDWEFNKA---------IKK------KQLKNY--SIDFGVCIFCGNCVEYCPTN 117 (183)
T ss_pred eCcccCcCcCChhhhCCCCccccccccccc---------ccc------ccccee--ecCcccccCcCchhhhcCCC
Confidence 456789999999999998642100000000 000 001111 12356799999999999986
No 78
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=97.26 E-value=4.5e-05 Score=68.20 Aligned_cols=58 Identities=28% Similarity=0.496 Sum_probs=34.4
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+...|+.||.|..+||.....-..... .+++ ...... ......|+.||.|..+||.+.
T Consensus 56 ~~~~Ci~C~~C~~~CP~~ai~~~~~~~-----------~~g~-----~~~~~~--~i~~~~C~~Cg~Cv~~CP~~A 113 (164)
T PRK05888 56 GEERCIACKLCAAICPADAITIEAAER-----------EDGR-----RRTTRY--DINFGRCIFCGFCEEACPTDA 113 (164)
T ss_pred CCccCCcccChHHHcCccccccccccC-----------CCCc-----ccceee--ecCCCcCcccCcchhhcCcCc
Confidence 346899999999999975421100000 0000 000000 124578999999999999764
No 79
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.25 E-value=0.00021 Score=63.45 Aligned_cols=43 Identities=26% Similarity=0.528 Sum_probs=34.9
Q ss_pred ccccCCCCCCcCccEEEeCCccccccccccc--ccccccccccCC
Q psy5769 18 TFRRSCREGICGSCAMNIGGVNTLACISKID--ANDKVSKIYPLP 60 (365)
Q Consensus 18 ~~~~~C~~~~CgsC~v~inG~~~laC~t~v~--~~~~~~~~~p~~ 60 (365)
.-+.+|.+|.||+|.|.|||+++.||.+++. ++.+.+|||=|.
T Consensus 35 gtK~gC~~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEgl~ 79 (151)
T TIGR03198 35 GTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIA 79 (151)
T ss_pred CCCCCCCCCcCCccEEEECCcEEechHHHHHHhcCCEEEecCCcC
Confidence 3566899999999999999999999999994 455556666654
No 80
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=97.25 E-value=7.3e-05 Score=73.39 Aligned_cols=62 Identities=27% Similarity=0.524 Sum_probs=35.7
Q ss_pred cccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 213 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 213 l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
..+..+|+.||.|..+||...... .++...++++.. .+...+ ......|+.|+.|..+||.+
T Consensus 243 ~id~~~Ci~C~~C~~~CP~~ai~~-----------~~~~~~~~~~~~--~~~~~~--~~d~~~C~gCg~C~~~CP~~ 304 (312)
T PRK14028 243 VIDHSKCIMCRKCWLYCPDDAIIE-----------AWREAEGPRGRK--FRMKMI--DFDYQYCKGCGVCAEVCPTG 304 (312)
T ss_pred EECcccCcCcccccccCChhhhhc-----------ccccccCccccc--ccceee--cCCcccCcCcCchhhhCCHh
Confidence 346689999999999999764210 111111111000 011101 12346899999999999964
No 81
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.16 E-value=7.7e-05 Score=84.98 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=39.7
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhH--HHHHhhhcCCCccccccccccccccCcCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT--ADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~--~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.+...|+.||.|..+||+..... .+.++.....+-+. ++.++... ..... ..-....+.|+.||.|.++||.+
T Consensus 680 ~~~~~Ci~Cg~C~~vCP~~ai~~-~~~~~~~~~~ap~~-~~~~~~~~~~~~~~~-~~i~i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 680 WVPDNCIQCNQCAFVCPHAAIRP-KLADEEELENAPAG-FKSLDAKGKELEGMK-FRIQISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred eccccCCCccchHHhcChhhccc-cccchhhhhcCccc-chhhhhhcccccccc-eeEEeccccCcCccchhhhcCCC
Confidence 45678999999999999886432 22333322211000 00000000 00000 00013568999999999999987
No 82
>PRK02651 photosystem I subunit VII; Provisional
Probab=97.14 E-value=0.00016 Score=56.83 Aligned_cols=56 Identities=20% Similarity=0.429 Sum_probs=34.3
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
....|+.||.|..+||.......+..+. .. ..+ ........|..|+.|..+||.+.
T Consensus 7 ~~~~Ci~C~~C~~~CP~~~i~~~~~~~~--------------~~---~~~---~~~~~~~~C~~Cg~C~~~CP~~a 62 (81)
T PRK02651 7 IYDTCIGCTQCVRACPLDVLEMVPWDGC--------------KA---GQI---ASSPRTEDCVGCKRCETACPTDF 62 (81)
T ss_pred ccccCCCcchHHHHCCccceeccccccc--------------cc---Ccc---cccCCCCcCCChhhhhhhcCCCc
Confidence 3478999999999999754321110000 00 000 01123468999999999999763
No 83
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.13 E-value=9.9e-05 Score=66.33 Aligned_cols=58 Identities=26% Similarity=0.503 Sum_probs=33.6
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
+...|+.||.|..+||...... .+++..+.+. ..+..+ ......|+.||+|.++||.+
T Consensus 57 ~~~~Ci~Cg~C~~aCP~~~~~~-----------~~~~~~~~~~----~~~~~~--~id~~~C~~Cg~C~~~CP~~ 114 (167)
T CHL00014 57 EFDKCIACEVCVRVCPIDLPVV-----------DWKLETDIRK----KRLLNY--SIDFGVCIFCGNCVEYCPTN 114 (167)
T ss_pred ccccCCCcCcHHHhCCCCCccc-----------cccccccccc----cccccc--cCCCCcCcCccchHhhcCcC
Confidence 4578999999999999763110 0000000000 001111 11335699999999999986
No 84
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=97.10 E-value=5.8e-05 Score=63.85 Aligned_cols=57 Identities=26% Similarity=0.493 Sum_probs=33.8
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
...|+.||.|..+||.....-....++ +.+ .....+ ......|..||.|..+||.+.
T Consensus 42 ~~~Ci~C~~C~~~CP~~ai~~~~~~~~-----------~~~-----~~~~~~--~~~~~~C~~Cg~Cv~~CP~~a 98 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADAIRVVPAEGE-----------DGK-----RRLKFY--QINFGRCIFCGLCEEACPTDA 98 (122)
T ss_pred cCcCcCcchhhhhcCHhHeeeeeeccC-----------CCc-----eecccc--eECcccCCCCCchhhhCCCcc
Confidence 478999999999999653211000000 000 000000 113467999999999999873
No 85
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.10 E-value=6.2e-05 Score=56.92 Aligned_cols=65 Identities=23% Similarity=0.506 Sum_probs=34.1
Q ss_pred hcccCCcccccCCCceeCCc-cc-CCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 218 ECILCACCSTSCPSYWWNGE-KY-LGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~~~~~~-~~-lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.|+.||+|..+||+.....+ +. ..+.. .+.....+.... +.. ...-...+.++.||.|..|||..
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~~~~~~~~~---~~~~~~~~~~~~---~~~-~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGEDEPTWEPKG---CWSYNNPGVKKW---RID-WEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred CCcchhHHHHhCcHhhccCCCcCeeecCc---chhccCccccCc---cch-HHhhhcCCCccccchhhccCCCC
Confidence 49999999999999876432 10 11100 000000000000 000 01112456778999999999963
No 86
>CHL00065 psaC photosystem I subunit VII
Probab=97.07 E-value=0.00015 Score=57.20 Aligned_cols=56 Identities=20% Similarity=0.459 Sum_probs=33.4
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
....|+.||.|..+||.....-.+..+. +. .... .......|+.|+.|..+||.+.
T Consensus 7 ~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~-------------~~----~~~~---~~~~~~~C~~C~~C~~~CP~~A 62 (81)
T CHL00065 7 IYDTCIGCTQCVRACPTDVLEMIPWDGC-------------KA----KQIA---SAPRTEDCVGCKRCESACPTDF 62 (81)
T ss_pred ccccCCChhHHHHHCCccchhheecccc-------------cc----cccc---ccCCCCcCCChhhhhhhcCccc
Confidence 3568999999999999653210000000 00 0000 0112467999999999999773
No 87
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=97.06 E-value=0.00048 Score=56.39 Aligned_cols=43 Identities=30% Similarity=0.630 Sum_probs=33.4
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CC-----------------cccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GG-----------------VNTLACISKIDA 49 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG-----------------~~~laC~t~v~~ 49 (365)
||||||.+.+ +.+.++|+.|.||+|.++| +| -.+|||.+.+..
T Consensus 24 tLLda~~~~G------i~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~~~~ 84 (97)
T TIGR02008 24 YILDAAEEAG------IDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAYPTS 84 (97)
T ss_pred cHHHHHHHcC------CCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCEECC
Confidence 6889987765 4568899999999999998 22 135999887754
No 88
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.05 E-value=0.00042 Score=61.57 Aligned_cols=55 Identities=22% Similarity=0.480 Sum_probs=39.1
Q ss_pred HHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCccccccccccc--ccccccccccCC
Q psy5769 2 VLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKID--ANDKVSKIYPLP 60 (365)
Q Consensus 2 vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~--~~~~~~~~~p~~ 60 (365)
+|++|+.-. . --.-..+|..|.||+|.|.|||+++.||.+.+. ++.+..|||=|.
T Consensus 23 Ll~~LRd~l---~-ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~ 79 (156)
T COG2080 23 LLDVLRDEL---G-LTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLA 79 (156)
T ss_pred HHHHHHHhc---C-CCCcCCCCCCccCCceEEEECCeEehHHHHHHHHhCCCeEEEeeccc
Confidence 566666322 1 122456899999999999999999999999984 444455566544
No 89
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.03 E-value=0.00013 Score=61.86 Aligned_cols=51 Identities=25% Similarity=0.558 Sum_probs=33.8
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
.+...|+.||.|..+||...... .+ + . ..+. .....|+.||.|..+||.+.
T Consensus 39 i~~~~Ci~C~~C~~~CP~~ai~~----~~-----------~--~----~~~~-----i~~~~C~~Cg~Cv~~CP~~A 89 (120)
T PRK08348 39 YDVDKCVGCRMCVTVCPAGVFVY----LP-----------E--I----RKVA-----LWTGRCVFCGQCVDVCPTGA 89 (120)
T ss_pred ECcccCcCcccHHHHCCccceEc----cc-----------c--c----cceE-----ecCCcCcChhhhHHhCCcCc
Confidence 45578999999999999754210 00 0 0 0000 12457999999999999763
No 90
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=97.03 E-value=0.0013 Score=65.77 Aligned_cols=79 Identities=27% Similarity=0.500 Sum_probs=51.2
Q ss_pred hcccCCcccccCCCceeCCcccCCHHHHHHHHHHHh--ccCChhHHHHHhhhcC--------CCccccccccccccccCc
Q psy5769 218 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWII--DSRDEKTADRLNQLKD--------PFSVYRCHTIMNCTRTCP 287 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~--d~rd~~~~erl~~~~~--------~~~l~~Ct~Cg~C~~vCP 287 (365)
.|+.|+.|+. ||... --|. ..+.+.... +.-+.. .-+...+.. ......|+.||.|.+.||
T Consensus 294 ~Ct~C~yC~P-CP~gI------nIP~-~f~lyN~~~~~~~~~~~-~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~CP 364 (391)
T COG1453 294 PCTGCRYCLP-CPSGI------NIPE-IFRLYNLAVAFDDVDYA-KFRYNMLENGGHWFPGPKGKASDCIECGQCLEKCP 364 (391)
T ss_pred CCccccccCc-CCCCC------ChHH-HHHHHHHHHhhccchhh-HHHHHHHhccCccCCCCcccccccchhhhhhhcCC
Confidence 4999999999 99874 1243 223332211 111111 112222211 234778999999999999
Q ss_pred CCCChHHHHHHHHHHHhc
Q psy5769 288 KGLNPGRAIAEIKKLLSG 305 (365)
Q Consensus 288 ~gI~~~~~I~~lR~~l~~ 305 (365)
.+|++++++.+.++.+.+
T Consensus 365 q~l~Ip~~Lk~v~~~leg 382 (391)
T COG1453 365 QHLDIPELLKEVHEELEG 382 (391)
T ss_pred CcCcHHHHHHHHHHHhcc
Confidence 999999999999988764
No 91
>CHL00134 petF ferredoxin; Validated
Probab=97.02 E-value=0.00059 Score=56.18 Aligned_cols=44 Identities=30% Similarity=0.636 Sum_probs=34.4
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CCc-----------------cccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GGV-----------------NTLACISKIDAN 50 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG~-----------------~~laC~t~v~~~ 50 (365)
||||||.+.+ +.+.++|+.|.||+|.++| .|. .+|+|.+.+...
T Consensus 26 tLL~a~~~~G------i~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~~d 87 (99)
T CHL00134 26 YILDAAEEQG------IDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCVAYPTSD 87 (99)
T ss_pred cHHHHHHHcC------CCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEeeCEECCC
Confidence 6889988776 5678899999999999998 221 348998877643
No 92
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.00 E-value=0.00015 Score=74.04 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=53.5
Q ss_pred CCCCccccccccchHHHHHHH--hhCCccccCcCC-CCcccccCCHHHHHhcccchhcccCCcccccCCCceeCCcccCC
Q psy5769 165 PHMYVVKDLVPDMNNFYAQYK--SIQPWLQRDKEN-IGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLG 241 (365)
Q Consensus 165 ~~fpVIkDLvVD~~~ff~klk--~vkp~l~~~~~~-~~~~~~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~~~~~~lg 241 (365)
....++++++.+++.|+++.. ++.-+....... .+.....+. .......+...|+.||.|..+||.....
T Consensus 288 ~gp~ii~~I~~~L~~~l~~~g~~si~e~iG~~~~~~~~~~~l~~~-~~~~~~~~~~~C~~C~~C~~~Cp~~~~~------ 360 (420)
T PRK08318 288 YGFRIVEDMISGLSHYMDEKGFASLEDMVGLAVPNVTDWEDLDLN-YIVYARIDQDKCIGCGRCYIACEDTSHQ------ 360 (420)
T ss_pred CCchhHHHHHHHHHHHHHHcCcchHHHHhcccccCcCChhhcccc-cceEEEECHHHCCCCCcccccCCCcchh------
Confidence 467799999999988888763 333222111100 000000000 0111224557999999999999953100
Q ss_pred HHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC
Q psy5769 242 PAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK 288 (365)
Q Consensus 242 P~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~ 288 (365)
++ ....++. ... . .....|+.||.|..+||.
T Consensus 361 --ai----~~~~~~~-----~~~--~---i~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 361 --AI----EWDEDGT-----RTP--E---VIEEECVGCNLCAHVCPV 391 (420)
T ss_pred --he----eeccCCC-----ceE--E---echhhCcccchHHhhCCC
Confidence 00 0000000 000 0 123569999999999997
No 93
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.96 E-value=0.00022 Score=56.03 Aligned_cols=56 Identities=21% Similarity=0.472 Sum_probs=34.1
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
....|+.||.|..+||+.... +.+.. ... ...+. .......|+.||.|.++||.+.
T Consensus 6 ~~~~Ci~C~~Cv~~CP~~~i~----~~~~~----------~~~---~~~~~---~~~~~~~C~~Cg~C~~~CP~~a 61 (80)
T TIGR03048 6 IYDTCIGCTQCVRACPTDVLE----MVPWD----------GCK---AGQIA---SAPRTEDCVGCKRCESACPTDF 61 (80)
T ss_pred cCCcCcCcchHHHHCCcccee----eeccc----------ccc---ccccc---CcCCCCcCcChhHHHHhcCccc
Confidence 457899999999999965321 11100 000 00010 0113468999999999999764
No 94
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=96.96 E-value=0.00015 Score=66.15 Aligned_cols=51 Identities=22% Similarity=0.516 Sum_probs=33.9
Q ss_pred cchhcccCCcccccCCCceeCCc--ccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGE--KYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~--~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
+...|+.||.|..+||.....-. ...|. ..+ ......|+.||.|.++||.+
T Consensus 36 d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~-------------------~~~-----~~~~~~C~~Cg~C~~~CPt~ 88 (181)
T PRK08222 36 MPSQCIACGACTCACPANALTIQTDDQQNS-------------------RTW-----QLYLGRCIYCGRCEEVCPTR 88 (181)
T ss_pred ChhhCcchhHHHHhCCccceEcccccccCc-------------------cce-----eeccCcCcCCCCcccccCcC
Confidence 45789999999999998653210 00000 001 01346899999999999986
No 95
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.91 E-value=0.00039 Score=76.02 Aligned_cols=53 Identities=23% Similarity=0.383 Sum_probs=35.3
Q ss_pred CcccccCCCCCCcCccEEEeCCccccccccc-ccccccccccccCCccccccccccchhhHHHHh
Q psy5769 16 TLTFRRSCREGICGSCAMNIGGVNTLACISK-IDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQY 79 (365)
Q Consensus 16 ~l~~~~~C~~~~CgsC~v~inG~~~laC~t~-v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~ 79 (365)
||.-+..|..|+||+|+|.+.|..+++|.-= |-+. -.|..|.+..+...|+.-
T Consensus 210 Sle~~M~CG~G~C~~C~v~~~~~~~~~C~dGPvF~~-----------~~v~~~~~~~r~~~~~~~ 263 (752)
T PRK12778 210 SLNTIMVDGTGMCGACRVTVGGKTKFACVDGPEFDG-----------HLVDFDEMLKRMGAYKTI 263 (752)
T ss_pred eCcccccCcccccCcceeEeCCCeEEEECCCCeecc-----------cEEeHHHHHHHHHHhHHH
Confidence 4666788999999999999988667889532 3222 123456666565555443
No 96
>PLN00071 photosystem I subunit VII; Provisional
Probab=96.90 E-value=0.00028 Score=55.49 Aligned_cols=55 Identities=20% Similarity=0.495 Sum_probs=33.1
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
..+|+.||.|..+||.....-....+. .. ..+. .......|+.||.|..+||.+.
T Consensus 8 ~~~C~~C~~C~~~CP~~~i~~~~~~~~-------------~~----~~~~---~~~~~~~C~~Cg~C~~~CP~~A 62 (81)
T PLN00071 8 YDTCIGCTQCVRACPTDVLEMIPWDGC-------------KA----KQIA---SAPRTEDCVGCKRCESACPTDF 62 (81)
T ss_pred CCcCcChhHHHHHCCccceeeeccccc-------------cc----cccc---CcCCCCcCcChhhHHhhcCCcc
Confidence 468999999999999653211000000 00 0000 0112457999999999999874
No 97
>PRK06273 ferredoxin; Provisional
Probab=96.87 E-value=0.0002 Score=64.40 Aligned_cols=60 Identities=20% Similarity=0.389 Sum_probs=35.1
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
....|+.||.|..+||....... ..+|......+ .....-......|+.||.|..+||.+
T Consensus 47 d~~~CigCg~C~~aCP~~AI~~~-~~ep~~~~~~~--------------~~~~~~~Id~~kCi~Cg~C~~aCP~~ 106 (165)
T PRK06273 47 FEELCIGCGGCANVCPTKAIEMI-PVEPVKITEGY--------------VKTKIPKIDYEKCVYCLYCHDFCPVF 106 (165)
T ss_pred CchhCcChhHHHHhcCccceeee-cccccchhccc--------------ccccceecccccCcCCCCcchhCCHh
Confidence 44689999999999997653211 11221110000 00000011357899999999999987
No 98
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=96.86 E-value=0.00076 Score=53.77 Aligned_cols=32 Identities=38% Similarity=0.758 Sum_probs=26.8
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CCc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GGV 38 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG~ 38 (365)
||||||.+.+ +...++||.|+||+|.+++ .|.
T Consensus 21 tlL~a~~~~g------i~~p~~Cr~G~Cg~C~~~~~sG~ 53 (84)
T PRK10713 21 SLLAALESHN------VAVEYQCREGYCGSCRTRLVAGQ 53 (84)
T ss_pred cHHHHHHHcC------CCCCCCCCCeECCCCEeEEEeCe
Confidence 6899988776 6688999999999999985 553
No 99
>KOG3256|consensus
Probab=96.80 E-value=0.00014 Score=64.99 Aligned_cols=59 Identities=24% Similarity=0.544 Sum_probs=37.3
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
....+||-|..|.++||+-...-+ ++.|... ..|.-.. +-..-.|..||.|.++||++.
T Consensus 108 ~geerCIACklCeavCPaqaitie---------------ae~r~dg-srRttrY--dIDmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 108 SGEERCIACKLCEAVCPAQAITIE---------------AEERTDG-SRRTTRY--DIDMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred CcchhhhhHHHHHHhCCcccceee---------------ceecCCc-cccceee--cccceeeeeecchhhhCCccc
Confidence 466899999999999998753211 0111000 0121111 125678999999999999763
No 100
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=96.70 E-value=0.00047 Score=55.13 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=34.7
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
....||.||.|..+||+..... ...+ . . .... ......|+.||.|..+||.+.
T Consensus 27 ~~~~Ci~Cg~C~~~CP~~ai~~-~~~~---------------~----~-~~~~--~~~~~~C~~C~~C~~~Cp~~a 79 (99)
T COG1145 27 DAEKCIGCGLCVKVCPTGAIEL-IEEG---------------L----L-LPEV--VIDPDLCVLCGACLKVCPVDA 79 (99)
T ss_pred CccccCCCCCchhhCCHHHhhc-cccc---------------C----c-cceE--EEccccCccccchHhhCCcCC
Confidence 3466999999999999874311 0000 0 0 0001 123578999999999999887
No 101
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=96.70 E-value=0.00061 Score=65.79 Aligned_cols=53 Identities=21% Similarity=0.444 Sum_probs=33.4
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.+..+|+.||.|..+||+.... .|.. .+.+ ... . .....|+.||+|.++||.+
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~-----~~~~---------~~~~----~~~-~----i~~~~C~~Cg~Cv~~CP~~ 257 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVL-----RPPL---------KGKQ----SPS-Q----VTSGDCITCGRCIDVCSED 257 (271)
T ss_pred CCcccCcccCCcCCcCCCccee-----cccc---------cCCC----ccc-e----eCcccCcChhHHHhhcCcc
Confidence 3557899999999999975321 1100 0000 000 0 1235699999999999975
No 102
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=96.69 E-value=0.0015 Score=54.07 Aligned_cols=45 Identities=24% Similarity=0.641 Sum_probs=34.8
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeC-C----------------------cccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIG-G----------------------VNTLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~in-G----------------------~~~laC~t~v~~~~ 51 (365)
||||++.+.+ +-..++||.|.||+|.|+|- | ..+|+|.+.+....
T Consensus 24 tiLe~a~~~g------i~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~~d~ 91 (102)
T COG0633 24 TLLEAAERNG------IPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDL 91 (102)
T ss_pred HHHHHHHHCC------CcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEECCCc
Confidence 5888888876 23789999999999999864 4 25688888776543
No 103
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.68 E-value=0.00028 Score=58.32 Aligned_cols=56 Identities=18% Similarity=0.449 Sum_probs=33.4
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.+...|+.||.|..+||+....-. ..+... . + .... . .....|+.|+.|..+||.+
T Consensus 13 id~~~Ci~C~~Cv~aCP~~ai~~~--~~~~~~-------~---~----~~~~-~---i~~~~C~~C~~C~~~CP~~ 68 (103)
T PRK09626 13 VDESRCKACDICVSVCPAGVLAMR--IDPHAV-------L---G----KMIK-V---VHPESCIGCRECELHCPDF 68 (103)
T ss_pred ECcccccCCcchhhhcChhhhccc--cccccc-------c---C----ceee-E---eCCccCCCcCcchhhCChh
Confidence 356789999999999997642100 000000 0 0 0000 0 1235799999999999954
No 104
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=96.67 E-value=0.00038 Score=55.74 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.8
Q ss_pred ccchhcccCCcccccCCCce
Q psy5769 214 DGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~ 233 (365)
.+...|+.||.|..+||...
T Consensus 18 i~~~~Ci~C~~Cv~~CP~~~ 37 (91)
T TIGR02936 18 IDQEKCIGCGRCYKVCGRDV 37 (91)
T ss_pred ECHhHCCCcchHHHHcChhh
Confidence 45678999999999999654
No 105
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.63 E-value=0.0021 Score=72.59 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=39.7
Q ss_pred CcccccCCCCCCcCccEEEeCCcccccccc-cccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 16 TLTFRRSCREGICGSCAMNIGGVNTLACIS-KIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 16 ~l~~~~~C~~~~CgsC~v~inG~~~laC~t-~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
||.=+..|..|+||+|.|.+.|..+++|.- ++-++ -.|..|.+..|.++|+.-.
T Consensus 210 Sle~~M~cG~G~Cg~C~v~~~~~~~~~C~DGPvF~~-----------~~v~~~~~~~r~~~~~~~e 264 (1006)
T PRK12775 210 SLNAIMVDGTGMCGSCRVTVGGEVKFACVDGPDFDG-----------HKVDFKELHARQKRFKSQE 264 (1006)
T ss_pred CChhheeCccceeCCCEeeeCCceEEEeCCCCeEEc-----------cEeeHHHHHhHHHHHHHHH
Confidence 677778999999999999999988899953 23222 2356677777777776543
No 106
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.63 E-value=0.00033 Score=63.58 Aligned_cols=53 Identities=32% Similarity=0.606 Sum_probs=33.7
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
+...|+.||.|..+||..........+ .+. ..+ ......|+.||.|.++||.+
T Consensus 36 d~~~C~~C~~Cv~~CP~~ai~~~~~~~--------------~~~---~~~-----~i~~~~C~~Cg~C~~vCP~~ 88 (180)
T PRK12387 36 NPQQCIGCAACVNACPSNALTVETDLA--------------TGE---LAW-----EFNLGRCIFCGRCEEVCPTA 88 (180)
T ss_pred ChhhCcChhHHHHhcCccCeEeecccc--------------CCc---ccc-----eeccccCcCccchhhhcCcC
Confidence 457899999999999976431100000 000 000 11346899999999999976
No 107
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=96.56 E-value=0.00033 Score=60.80 Aligned_cols=50 Identities=26% Similarity=0.519 Sum_probs=33.4
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
.+...|+.||.|..+||...... ++ .....+ ....|+.||.|..+||.+.
T Consensus 56 ~d~~~Ci~C~~C~~~CP~~ai~~-------------------~~----~~~~~i----~~~~C~~Cg~Cv~vCP~~a 105 (133)
T PRK09625 56 HNNEICINCFNCWVYCPDAAILS-------------------RD----KKLKGV----DYSHCKGCGVCVEVCPTNP 105 (133)
T ss_pred EehhHCcChhhHHHhCCHhheEe-------------------cC----CceEEe----CcCcCcChhHHHHHCCcCc
Confidence 35588999999999999653210 00 000001 2356999999999999875
No 108
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=96.53 E-value=0.0006 Score=67.93 Aligned_cols=60 Identities=25% Similarity=0.514 Sum_probs=34.9
Q ss_pred cccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC
Q psy5769 213 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK 288 (365)
Q Consensus 213 l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~ 288 (365)
+.+...|+.||.|.++||.....-.. ++. ..++.+ +.........+.|..||.|..+||.
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~--~~~--------~~~~~~------~~~~~~~~d~~~C~~Cg~C~~vCP~ 67 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDK--KAE--------IRDPND------LELYEKGAAPNVCEGCLTCSRICPV 67 (341)
T ss_pred EECcccCcChHHHHHhCCHhhheccc--Ccc--------cccccc------hhhhccCCCcCcCcCcCchhhhCCC
Confidence 34567899999999999975322100 000 000000 0000111246789999999999997
No 109
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.48 E-value=0.00073 Score=64.73 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=32.6
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
.++|+.||.|..+||+.... .+. .++. +.. . .....|+.||+|.++||.+.
T Consensus 200 ~~~C~~C~~C~~vCP~~~vl-----~~~-----------~~~~---~~~-~----i~~~~C~~Cg~Cv~~CP~~A 250 (255)
T TIGR02163 200 REKCTNCMDCFNVCPEPQVL-----RMP-----------LKKG---GST-L----VLSGDCTLCGRCIDVCHEDV 250 (255)
T ss_pred cccCeEcCCccCcCCCCcee-----ecc-----------ccCC---Cce-E----eccccccchhHHHHhCCccc
Confidence 57899999999999975321 000 0000 000 0 12356999999999999863
No 110
>PRK06991 ferredoxin; Provisional
Probab=96.47 E-value=0.00057 Score=66.13 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=32.8
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
+...||.||.|..+||+.... ..+. .+.. .....|+.||.|..+||.+
T Consensus 83 d~~~CigCg~Cv~aCP~~AI~----~~~~-------------------~~~~----v~~~~CigCg~Cv~vCP~~ 130 (270)
T PRK06991 83 DEQLCIGCTLCMQACPVDAIV----GAPK-------------------QMHT----VLADLCTGCDLCVPPCPVD 130 (270)
T ss_pred ccccCCCCcHHHHhCCHhhee----cccc-------------------ccee----eCHhhCCCchHHHhhCCcC
Confidence 347899999999999965431 1110 0000 1235799999999999987
No 111
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=96.46 E-value=0.00066 Score=65.71 Aligned_cols=65 Identities=23% Similarity=0.528 Sum_probs=40.5
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC----
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG---- 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g---- 289 (365)
.+...|+.||.|..+||..... +.. ..+.. .. . ......|..||.|..+||.+
T Consensus 45 ~~~~~C~~C~~C~~~Cp~~a~~----~~~---------~~~~~-----~~---~--~~~~~~C~~Cg~C~~~CP~~Ai~~ 101 (295)
T TIGR02494 45 FKENRCLGCGKCVEVCPAGTAR----LSE---------LADGR-----NR---I--IIRREKCTHCGKCTEACPSGALSI 101 (295)
T ss_pred EccccCCCCchhhhhCcccccc----ccc---------ccCCC-----cc---e--eechhhcCchhHhhccCcHhHHhh
Confidence 3557899999999999976421 000 00000 00 0 12356899999999999964
Q ss_pred ----CChHHHHHHHHH
Q psy5769 290 ----LNPGRAIAEIKK 301 (365)
Q Consensus 290 ----I~~~~~I~~lR~ 301 (365)
+...+++..+.+
T Consensus 102 ~g~~~t~eel~~~i~~ 117 (295)
T TIGR02494 102 VGEEMTVEEVMRVVLR 117 (295)
T ss_pred hccCCcHHHHHHHHHH
Confidence 345556665554
No 112
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=96.39 E-value=0.003 Score=53.63 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=33.6
Q ss_pred CHHHHHHHhhhccCCCcccccCCCC-CCcCccEEEe-CC-------------------------cccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCRE-GICGSCAMNI-GG-------------------------VNTLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~-~~CgsC~v~i-nG-------------------------~~~laC~t~v~~~~ 51 (365)
|||+|+...+- .+..+|+. |.||+|.|.| +| ..||||++.+.+.+
T Consensus 22 tLl~a~~~~gi------~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~sRLaCQ~~v~~~~ 93 (117)
T PLN02593 22 SLLEAAHENDI------ELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTETSRLGCQVIAKPEL 93 (117)
T ss_pred cHHHHHHHcCC------CCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCCeEecceeEeecCC
Confidence 68888888762 24568985 9999999999 21 13599999997543
No 113
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=96.36 E-value=0.00072 Score=62.19 Aligned_cols=49 Identities=22% Similarity=0.506 Sum_probs=32.2
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+...|+.||.|..+||...... +.+. +..+ ....|+.||.|..+||.+.
T Consensus 112 d~~~Ci~Cg~Cv~aCp~~ai~~-----------------~~~~------~~~v----~~~~C~~Cg~Cv~vCP~~A 160 (191)
T PRK05113 112 DEDNCIGCTKCIQACPVDAIVG-----------------ATKA------MHTV----ISDLCTGCDLCVAPCPTDC 160 (191)
T ss_pred eCCcCCCCChhhhhCCHhhhec-----------------ccCC------ceee----cCCcCCchHHHHHHcCcCc
Confidence 3478999999999999542110 0000 0001 2357999999999999753
No 114
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=96.34 E-value=0.0018 Score=62.42 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=32.7
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
...|+.||.|.++|+..... .-| ++. . ...-..|..||+|..+||.+
T Consensus 68 ~e~C~~CG~C~~vC~f~Ai~----~~~------------~~~---------~--~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 68 PEKCIRCGKCAEVCRFGAIV----VLP------------GGK---------P--VLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred hhhccccCcHHHhCCCCeEE----EcC------------CCc---------e--ecCcccccCcccceeeCCCc
Confidence 45699999999999987531 000 000 0 01357899999999999976
No 115
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=96.33 E-value=0.0029 Score=53.01 Aligned_cols=29 Identities=17% Similarity=0.536 Sum_probs=23.2
Q ss_pred CHHHHHHHhhhccCCCcccccCCC-CCCcCccEEEe
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCR-EGICGSCAMNI 35 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~-~~~CgsC~v~i 35 (365)
||||||.+.+ +.+.++|+ .|.||+|.|.|
T Consensus 25 tLL~a~~~~g------i~i~~~CgG~G~CgtC~v~V 54 (110)
T TIGR02007 25 TILDVALDNG------IEIEHACEKSCACTTCHCIV 54 (110)
T ss_pred hHHHHHHHcC------CCccccCCCCceeCCCEEEE
Confidence 5788887765 33667998 69999999988
No 116
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=96.33 E-value=0.00043 Score=70.99 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.9
Q ss_pred ccchhcccCC--cccccCCCcee
Q psy5769 214 DGLYECILCA--CCSTSCPSYWW 234 (365)
Q Consensus 214 ~~~~~CI~CG--~C~s~CP~~~~ 234 (365)
.....|++|+ .|..+||+...
T Consensus 178 y~p~~C~HC~nP~CV~ACPtGAI 200 (492)
T TIGR01660 178 YLPRLCEHCLNPACVASCPSGAI 200 (492)
T ss_pred ECCCcCcCCCcccchhhCccCCe
Confidence 3456899998 99999998754
No 117
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.28 E-value=0.00077 Score=56.14 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=32.0
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
+...|+.||.|..+||......++ + ... .. ....|+.|+.|..+||.+
T Consensus 49 d~~~Ci~C~~C~~~CP~~ai~~~~---------------~--------~~~-~i---d~~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09624 49 NRDKCVRCYLCYIYCPEPAIYLDE---------------E--------GYP-VF---DYDYCKGCGICANECPTK 96 (105)
T ss_pred ChhHCcChhhHHhhCCHhhEEecC---------------C--------CcE-EE---CchhCCCcCchhhhcCcC
Confidence 456899999999999965321000 0 000 01 234799999999999975
No 118
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.21 E-value=0.0032 Score=70.70 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=43.8
Q ss_pred CHHHHHHHhhhccCCCcccccC-CCCCCcCccEEEeCCccccccccccc--ccccccccccCCc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRS-CREGICGSCAMNIGGVNTLACISKID--ANDKVSKIYPLPH 61 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~-C~~~~CgsC~v~inG~~~laC~t~v~--~~~~~~~~~p~~~ 61 (365)
++||+|+..+ -..-+.+ |..|.||+|.|.|||+++.||.+.+. ++.+..|||=|..
T Consensus 21 ~l~~~LR~~~-----~~~~k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tvegl~~ 79 (956)
T PRK09800 21 NVQKLLFNMG-----MHSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESLGK 79 (956)
T ss_pred CHHHHHHHCC-----CCccccCCCCcccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecCCcCC
Confidence 5788888732 1234565 89999999999999999999999984 4556678888874
No 119
>PRK10194 ferredoxin-type protein; Provisional
Probab=96.20 E-value=0.00083 Score=59.93 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=32.1
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
....|+.||.|..+||......+ ..| ...+. .....|+.|+.|..+||.+.
T Consensus 32 ~~~~C~~Cg~C~~aCp~~~i~~~-~~~----------------------~~~~~--~~~~~C~~C~~C~~~CP~~a 82 (163)
T PRK10194 32 FLTHCTRCDACINACENNILQRG-AGG----------------------YPSVN--FKNNECSFCYACAQACPESL 82 (163)
T ss_pred HhhhCcChhHHHHHcChhhcccC-CCC----------------------ceeee--ecCCCCCCchhhHhhCcchh
Confidence 35689999999999997542100 000 00000 12346999999999999874
No 120
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=96.18 E-value=0.0015 Score=53.90 Aligned_cols=51 Identities=20% Similarity=0.455 Sum_probs=33.0
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
....|+.||.|..+||......+ ..|. .. + ......|+.||.|..+||.+.
T Consensus 32 ~~~~C~~C~~C~~~CP~~~i~~~-~~g~-------------------~~---~--~i~~~~C~~Cg~C~~~CP~~A 82 (101)
T TIGR00402 32 FSAVCTRCGECASACENNILQLG-QQGQ-------------------PT---V--EFDNAECDFCGKCAEACPTNA 82 (101)
T ss_pred CcCcCcChhHHHHHcCcccceec-cCCc-------------------ee---e--EecCccCcCccChhhHCCccc
Confidence 34689999999999997542210 0000 00 0 012347999999999999865
No 121
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=96.17 E-value=0.001 Score=67.00 Aligned_cols=63 Identities=21% Similarity=0.427 Sum_probs=35.2
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
+...|+.||.|..+||....... ..+. .+.... ..............|+.||.|..+||.+.-
T Consensus 5 d~~kCi~Cg~Cv~~CP~~ai~~~--~~~~---------~~~~~~---~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai 67 (374)
T TIGR02512 5 DMSKCIGCGRCVRACTNVQIVGA--LGFL---------NRGGKT---EVAPKFGRLLDESNCIGCGQCSLVCPVGAI 67 (374)
T ss_pred chhhCCcChHhhhhCCHhhcccc--cccc---------ccCCcc---ccccccccccCcccCcCccCHHHhCCCChh
Confidence 45789999999999997653210 0000 000000 000000001134679999999999997654
No 122
>PTZ00038 ferredoxin; Provisional
Probab=96.16 E-value=0.0044 Score=57.03 Aligned_cols=44 Identities=30% Similarity=0.594 Sum_probs=34.4
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CCc-----------------cccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GGV-----------------NTLACISKIDAN 50 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG~-----------------~~laC~t~v~~~ 50 (365)
|||||+.+.+ +...++|+.|.||+|.++| .|. .+|+|.+.+...
T Consensus 116 TILdAae~aG------I~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa~p~sD 177 (191)
T PTZ00038 116 YILDAAERQG------VELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYPKSD 177 (191)
T ss_pred cHHHHHHHcC------CCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeCEECCC
Confidence 6899988876 5577899999999999997 221 359999888643
No 123
>PLN03136 Ferredoxin; Provisional
Probab=96.16 E-value=0.0047 Score=54.71 Aligned_cols=43 Identities=35% Similarity=0.657 Sum_probs=33.7
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CCc-----------------ccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GGV-----------------NTLACISKIDA 49 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG~-----------------~~laC~t~v~~ 49 (365)
+||||+.+.+ +...++|+.|.||+|.+.| .|. .+|+|.+....
T Consensus 75 tILdAa~~~G------i~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~a~p~s 135 (148)
T PLN03136 75 YVLDAAEEAG------IDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTS 135 (148)
T ss_pred cHHHHHHHcC------CCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeEeEECC
Confidence 6889988776 5577889999999999998 332 35888887764
No 124
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=96.10 E-value=0.004 Score=69.93 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=43.7
Q ss_pred CHHHHHHHhhhccCCCccccc-CCCCCCcCccEEEeCCccccccccccc--ccccccccccCCc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRR-SCREGICGSCAMNIGGVNTLACISKID--ANDKVSKIYPLPH 61 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~-~C~~~~CgsC~v~inG~~~laC~t~v~--~~~~~~~~~p~~~ 61 (365)
++|++|+.. . -..-+. +|..|.||+|.|.|||+++.||.+++. ++.+..|||=|..
T Consensus 17 ~l~~~LR~~--~---l~~~k~~~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl~~ 75 (951)
T TIGR03313 17 NVQTLLFNM--G---MHSVRNSDDGFGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLGQ 75 (951)
T ss_pred CHHHHHHHC--C---CCCCcCCCCCcccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcCCC
Confidence 467777762 1 123566 699999999999999999999999983 4666778888874
No 125
>PRK08764 ferredoxin; Provisional
Probab=96.10 E-value=0.0017 Score=56.45 Aligned_cols=47 Identities=23% Similarity=0.558 Sum_probs=31.9
Q ss_pred hhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 217 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
..||.||.|..+||...... +.+. ... .....|+.||.|..+||.+.
T Consensus 85 ~~Ci~C~~Cv~aCp~~ai~~-----------------~~~~------~~~----v~~~~C~~Cg~Cv~~CP~~A 131 (135)
T PRK08764 85 ADCIGCTKCIQACPVDAIVG-----------------GAKH------MHT----VIAPLCTGCELCVPACPVDC 131 (135)
T ss_pred ccCcCcchHHHhCChhhcCc-----------------cCCC------cee----ecCCcCcCccchhhhcCccc
Confidence 68999999999999653210 0000 000 12357999999999999864
No 126
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=96.08 E-value=0.0013 Score=51.08 Aligned_cols=50 Identities=22% Similarity=0.398 Sum_probs=33.0
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
.....|+.||.|..+||........ .+ . ..+ ....|+.|+.|..+||.+.
T Consensus 22 i~~~~C~~C~~C~~~Cp~~ai~~~~-~~---------------------~-~~i----~~~~C~~C~~C~~~CP~~A 71 (78)
T TIGR02179 22 VDKEKCIKCKNCWLYCPEGAIQEDE-GG---------------------F-VGI----DYDYCKGCGICANVCPVKA 71 (78)
T ss_pred EcCCcCcChhHHHhhcCccceEecC-CC---------------------c-EEe----cCccCcCccchhhhCCccc
Confidence 3457899999999999966421100 00 0 001 1346999999999999763
No 127
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.07 E-value=0.0022 Score=48.88 Aligned_cols=50 Identities=26% Similarity=0.578 Sum_probs=33.8
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
...|+.||.|..+||..... .+... + ... + ......|+.||.|..+||.+
T Consensus 7 ~~~C~~c~~C~~~CP~~~~~----~~~~~---------~-------~~~--~--~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 7 YDKCIGCGICVEVCPAGVFD----LGEDE---------G-------GKP--V--VARPEECIDCGLCELACPVG 56 (68)
T ss_pred chhcCCCChheeccChhhEE----ecccc---------C-------cce--e--EeccccCccchhhhhhCCcc
Confidence 45699999999999987542 11100 0 000 0 12456799999999999987
No 128
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=96.06 E-value=0.0011 Score=59.47 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=32.9
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
.+...|+.||.|..+||...... +.+. ...+ ....|+.||.|..+||.+.
T Consensus 110 id~~~Ci~Cg~C~~aCp~~ai~~-----------------~~~~------~~~i----~~~~C~~Cg~Cv~~CP~~A 159 (165)
T TIGR01944 110 IDEDNCIGCTKCIQACPVDAIVG-----------------AAKA------MHTV----IADECTGCDLCVEPCPTDC 159 (165)
T ss_pred EECCcCCChhHHHHhCCccceEe-----------------cCCC------ceEe----ecccccChhHHHHhcCcCc
Confidence 34578999999999999643210 0000 0001 2356999999999999764
No 129
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=96.02 E-value=0.0051 Score=60.11 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=48.8
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC----
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN---- 291 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~---- 291 (365)
-..|+.||.|.+.||+...+. + + . ..-+...|..|+.|.++||.|.-
T Consensus 192 e~kc~~c~~cv~~cp~~Ai~~--~--------------~------------~-~~I~~~~ci~c~~c~~ac~~gav~~~W 242 (354)
T COG2768 192 EEKCYDCGLCVKICPVGAITL--T--------------K------------V-VKIDYEKCIGCGQCMEACPYGAVDQNW 242 (354)
T ss_pred eecccccchhhhhCCCcceec--c--------------c------------c-eeechhhccchhhhhhhccCcccccch
Confidence 368999999999999987532 0 0 0 01246789999999999998763
Q ss_pred ---hHHHHHHHHHHHhcccccCCCCcchhhhccccc
Q psy5769 292 ---PGRAIAEIKKLLSGLVKKDKPGLDTAALHKIDA 324 (365)
Q Consensus 292 ---~~~~I~~lR~~l~~~~~~~~P~~~~~~L~nIer 324 (365)
..+.+..|-+...+...+...-....||.+|..
T Consensus 243 ~~~~~~f~e~m~E~~~g~~k~k~~v~yinfL~~itp 278 (354)
T COG2768 243 EEDSPEFLERMAEYAKGVMKGKENVVYINFLMNITP 278 (354)
T ss_pred hhccHHHHHHHHHHhHHHhcccccEEEEEeeecCCC
Confidence 224444444433322111122233567777744
No 130
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.99 E-value=0.0019 Score=38.94 Aligned_cols=19 Identities=37% Similarity=0.952 Sum_probs=16.3
Q ss_pred cccchhcccCCcccccCCC
Q psy5769 213 LDGLYECILCACCSTSCPS 231 (365)
Q Consensus 213 l~~~~~CI~CG~C~s~CP~ 231 (365)
+.+.++||.||+|..+||+
T Consensus 4 ~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 4 VIDLERCIGCGACEVACPV 22 (22)
T ss_pred EEccccccCchhHHHhhCc
Confidence 3467899999999999985
No 131
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=95.84 E-value=0.0018 Score=53.82 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=32.4
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.+...|+.||.|..+||..... . +. + ... . ...-.|+.||.|..+||.+
T Consensus 48 i~~~~Ci~C~~C~~~CP~~ai~----~-------------~~-~----~~~--~---id~~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09623 48 VDESKCVKCYICWKFCPEPAIY----I-------------KE-D----GYV--A---IDYDYCKGCGICANECPTK 96 (105)
T ss_pred ECcccCccccchhhhCCHhheE----e-------------cC-C----CcE--E---eCchhCcCcchhhhhcCcC
Confidence 4567899999999999964211 0 00 0 000 0 1235699999999999975
No 132
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=95.69 E-value=0.0019 Score=63.52 Aligned_cols=51 Identities=22% Similarity=0.503 Sum_probs=32.9
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+...|+.||.|.++||...... +.. + + ..+ . .....|+.||+|..+||.+.
T Consensus 167 d~~~C~~Cg~C~~~Cp~~a~~a---i~~-----------~--~----~~~--~---id~~~C~~Cg~Cv~~CP~~A 217 (314)
T TIGR02912 167 DADRCIGCGACVKVCKKKAVGA---LSF-----------E--N----YKV--V---RDHSKCIGCGECVLKCPTGA 217 (314)
T ss_pred eCccCCcchHHHHhcChhhcCc---eec-----------c--C----CeE--E---eCCCcCcCcchhhhhCCHhh
Confidence 4578999999999999642100 000 0 0 000 0 13458999999999999763
No 133
>PRK09898 hypothetical protein; Provisional
Probab=95.67 E-value=0.0041 Score=57.69 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=15.4
Q ss_pred cccccccccccccCcCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI 290 (365)
...|+.||.|.++||.+.
T Consensus 180 ~~kC~~Cg~Cv~~CP~~A 197 (208)
T PRK09898 180 SSKCVLCGECANACPTGA 197 (208)
T ss_pred CCcCcChHHHHHhCCccc
Confidence 457999999999999763
No 134
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=95.65 E-value=0.0099 Score=66.12 Aligned_cols=57 Identities=23% Similarity=0.483 Sum_probs=44.4
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeCCccccccccccc--ccccccccccCCc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKID--ANDKVSKIYPLPH 61 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC~t~v~--~~~~~~~~~p~~~ 61 (365)
++|++|+.- .. =..-+.+|..|.||+|.|.|||+++.||.+.+. ++.+..|||=|..
T Consensus 17 ~l~~~lr~~---~~-~~~~k~gc~~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~ 75 (848)
T TIGR03311 17 KLLEFLRED---LR-LTGVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTE 75 (848)
T ss_pred cHHHHHHHh---cC-CCcCCCCCCCCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCC
Confidence 466666642 22 125688999999999999999999999999984 4566778888874
No 135
>PRK05713 hypothetical protein; Provisional
Probab=95.60 E-value=0.0099 Score=58.19 Aligned_cols=44 Identities=32% Similarity=0.580 Sum_probs=35.1
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CCc-----------------cccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GGV-----------------NTLACISKIDAN 50 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG~-----------------~~laC~t~v~~~ 50 (365)
|||||+.+.+ +...++|+.|.||+|.+.| .|. .+|||.+.+...
T Consensus 18 tlL~a~~~~g------i~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d 79 (312)
T PRK05713 18 NLLDALNAAG------VAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGD 79 (312)
T ss_pred cHHHHHHHcC------CCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCc
Confidence 6899988876 4456889999999999998 332 369999999754
No 136
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.56 E-value=0.0034 Score=34.41 Aligned_cols=15 Identities=33% Similarity=0.926 Sum_probs=13.5
Q ss_pred ccccccccccCcCCC
Q psy5769 276 CHTIMNCTRTCPKGL 290 (365)
Q Consensus 276 Ct~Cg~C~~vCP~gI 290 (365)
|+.|+.|.++||.+.
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 889999999999873
No 137
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=95.55 E-value=0.0082 Score=58.49 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=36.4
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCcccccc-ccccccccCcCCCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCH-TIMNCTRTCPKGLN 291 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct-~Cg~C~~vCP~gI~ 291 (365)
...|..|+.|..+||+........+.+..=+ .|... +.+.... +.+.. ....|. .|+.|..|||.+-.
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~-sy~ti-~~~~~~~-~~~~~-----~~~~~~~gCd~Cq~vCP~n~~ 226 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVEPEFVDAPRCI-SYLTI-EKDAALP-KEFAS-----NCGGRSYGCDICQEVCPWNKK 226 (282)
T ss_pred CCCCccHHHHHHhcCcccccCCCccCHHHHH-HHhcc-cCCCcCC-HHHHH-----HhcCcccCCCCccccCCCCCC
Confidence 3579999999999999875322223332211 11111 1111000 11111 233454 69999999998753
No 138
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=95.52 E-value=0.0039 Score=64.22 Aligned_cols=40 Identities=30% Similarity=0.596 Sum_probs=29.8
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK 288 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~ 288 (365)
...|+.||.|..+||.... . ++ .....|+.|+.|.++||.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~-----~---------------~~-------------~~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGID-----I---------------RD-------------GLQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCChhhhHHhCCCCCE-----e---------------CC-------------CCchhChhhhHHHHhCCC
Confidence 4689999999999996521 0 00 012469999999999995
No 139
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=95.50 E-value=0.01 Score=58.55 Aligned_cols=44 Identities=30% Similarity=0.685 Sum_probs=34.3
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CCc-------------------cccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GGV-------------------NTLACISKIDAN 50 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG~-------------------~~laC~t~v~~~ 50 (365)
||||||.+-+ +.+.++|+.|+||+|.++| .|. .+|||.+.+...
T Consensus 21 tlL~a~~~~g------i~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d 84 (339)
T PRK07609 21 TILDAALRQG------IHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPLSD 84 (339)
T ss_pred cHHHHHHHcC------CCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEECCC
Confidence 6888888765 5578899999999999985 332 259999888654
No 140
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=95.39 E-value=0.0045 Score=63.28 Aligned_cols=48 Identities=27% Similarity=0.616 Sum_probs=33.0
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.+...|+.||.|..+||...... . ... . .. ....|+.|+.|..+||.+
T Consensus 7 id~~~Ci~C~~C~~~CP~~ai~~----~-------------~~~------~--~i---~~~~C~~C~~C~~~CP~~ 54 (411)
T TIGR03224 7 IDPEICIRCNTCEETCPIDAITH----D-------------DRN------Y--VV---KADVCNGCMACVSPCPTG 54 (411)
T ss_pred eCcccCcCccchhhhCCcccEec----c-------------CCc------e--Ee---CcccCcCHHHHHhhcCcc
Confidence 45578999999999999754311 0 000 0 01 234699999999999976
No 141
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=95.34 E-value=0.012 Score=58.38 Aligned_cols=44 Identities=32% Similarity=0.850 Sum_probs=34.5
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CCc-------------------cccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GGV-------------------NTLACISKIDAN 50 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG~-------------------~~laC~t~v~~~ 50 (365)
|||||+.+.+ +...++|+.|.||+|.++| .|. .+|||.+.+...
T Consensus 24 tlL~a~~~~g------~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d 87 (340)
T PRK11872 24 LLLDAALRNG------INLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVKSD 87 (340)
T ss_pred cHHHHHHHcC------CCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEECCc
Confidence 6899988775 5678899999999999997 232 249999888654
No 142
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.31 E-value=0.0078 Score=33.98 Aligned_cols=15 Identities=40% Similarity=1.132 Sum_probs=13.8
Q ss_pred hhcccCCcccccCCC
Q psy5769 217 YECILCACCSTSCPS 231 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~ 231 (365)
..|+.||.|..+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 479999999999996
No 143
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=95.29 E-value=0.024 Score=58.96 Aligned_cols=28 Identities=39% Similarity=0.689 Sum_probs=23.6
Q ss_pred cCCccccccccccchhhHHHHhhhhhhcc
Q psy5769 58 PLPHMYVVKDLVPDMNNFYAQYKSIQRHL 86 (365)
Q Consensus 58 p~~~~~~~~dl~~~~~~~~~~~~~~~~~~ 86 (365)
|++ +|+++||++|++.+++.++++...+
T Consensus 86 ~~~-~~~~~~~v~d~~~~~~~~~~~~~~~ 113 (486)
T PRK06259 86 PLD-FPVIKDLIVDREPYYKKLKSLRNYL 113 (486)
T ss_pred ecC-CcchhccccccHHHHHHHHhhcCCC
Confidence 445 8999999999999999998887544
No 144
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=95.14 E-value=0.0039 Score=58.26 Aligned_cols=19 Identities=32% Similarity=0.843 Sum_probs=16.5
Q ss_pred chhcccCCcccccCCCcee
Q psy5769 216 LYECILCACCSTSCPSYWW 234 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~ 234 (365)
+..|+.||.|+.+||....
T Consensus 52 ~~~Ci~Cg~Cv~aCP~~ai 70 (213)
T TIGR00397 52 LAACVRCGLCVEACPYDIL 70 (213)
T ss_pred cccccchhHHHHhCCcccc
Confidence 4799999999999998653
No 145
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=95.11 E-value=0.0042 Score=58.73 Aligned_cols=47 Identities=21% Similarity=0.519 Sum_probs=32.3
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
+...|+.||.|..+||...... . + + .. ......|..||.|..+||.+
T Consensus 146 d~~~C~~C~~C~~~CP~~ai~~----~------------~--~-----~~-----~i~~~~C~~Cg~C~~~CP~~ 192 (234)
T TIGR02700 146 DRKRCKGCGICVDACPRSAIDM----V------------D--G-----KA-----FIRLLKCVGCGKCKEACPYN 192 (234)
T ss_pred ChhHCcCcchHHHhCCcccEEe----c------------C--C-----ce-----EEchhhCCccchHHhhCCCC
Confidence 4478999999999999753210 0 0 0 00 01245799999999999976
No 146
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=95.06 E-value=0.0072 Score=48.94 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=33.4
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK 288 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~ 288 (365)
.+...||.|+.|.--||-......+.... ..-....|-+||-|+.+||.
T Consensus 32 ~d~~kCi~C~~C~~yCPe~~i~~~~~~~~--------------------------~~idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 32 VDEDKCINCKLCWLYCPEPAILEEEGGYK--------------------------VRIDYDYCKGCGICANVCPV 80 (91)
T ss_pred EcccccccCceeEEECCchheeeccCCcc--------------------------ceeEcccccCceechhhCCh
Confidence 35578999999999999775321100000 00134579999999999997
No 147
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=95.05 E-value=0.0093 Score=55.43 Aligned_cols=57 Identities=28% Similarity=0.449 Sum_probs=41.5
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCcccccccc------c---ccccc
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI------M---NCTRT 285 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~C------g---~C~~v 285 (365)
+...||.||.|..+||...- ++.+ +....+.|+.| | +|+++
T Consensus 98 d~d~CIGC~yCi~ACPyga~----~~~~--------------------------~~~~~~KCt~C~~ri~~g~~PaCV~~ 147 (203)
T COG0437 98 DKDLCIGCGYCIAACPYGAP----QFNP--------------------------DKGVVDKCTFCVDRVAVGKLPACVEA 147 (203)
T ss_pred cCCcccCchHHHhhCCCCCc----eeCc--------------------------ccCcccccCcchhhHhcCCCCccccc
Confidence 45789999999999997641 2222 01137889999 8 99999
Q ss_pred CcCCCChHHHHHHHHH
Q psy5769 286 CPKGLNPGRAIAEIKK 301 (365)
Q Consensus 286 CP~gI~~~~~I~~lR~ 301 (365)
||.+.-.-.-+.+++.
T Consensus 148 CP~~A~~fG~~~d~~~ 163 (203)
T COG0437 148 CPTGALIFGDIDDPKS 163 (203)
T ss_pred CCcccccccchhhcch
Confidence 9988776555666655
No 148
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=95.05 E-value=0.016 Score=57.10 Aligned_cols=34 Identities=35% Similarity=0.758 Sum_probs=27.2
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CCccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GGVNT 40 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG~~~ 40 (365)
|||+||...+ +...++||.|+||+|.++| .|...
T Consensus 267 ~lL~~~~~~g------i~~~~~C~~G~Cg~C~~~~~~G~v~ 301 (332)
T PRK10684 267 TLLEALESNK------VPVVAACRAGVCGCCKTKVVSGEYT 301 (332)
T ss_pred hHHHHHHHcC------CCccCCCCCcCCCCCEEEEecCccc
Confidence 6888887765 5577899999999999985 56544
No 149
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=95.05 E-value=0.0064 Score=59.98 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=15.9
Q ss_pred cccchhcccCC--cccccCCCcee
Q psy5769 213 LDGLYECILCA--CCSTSCPSYWW 234 (365)
Q Consensus 213 l~~~~~CI~CG--~C~s~CP~~~~ 234 (365)
+.....|+.|+ .|.++||+...
T Consensus 125 ~y~p~~C~hC~nP~Cv~aCPtgAI 148 (321)
T TIGR03478 125 FYLPRICNHCTNPACLAACPTGAI 148 (321)
T ss_pred EEecccCCCCCCccchhhCCcCcE
Confidence 34557888888 78888887643
No 150
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.96 E-value=0.0056 Score=37.66 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=15.6
Q ss_pred cchhcccCCcccccCCCc
Q psy5769 215 GLYECILCACCSTSCPSY 232 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~ 232 (365)
+...|+.||.|..+||..
T Consensus 5 d~~~C~~Cg~C~~~Cp~~ 22 (24)
T PF12837_consen 5 DPDKCIGCGDCVRVCPEG 22 (24)
T ss_pred ChhhCcChhHHHHhcchh
Confidence 457899999999999974
No 151
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=94.92 E-value=0.023 Score=59.20 Aligned_cols=57 Identities=26% Similarity=0.476 Sum_probs=43.7
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe----CC-----ccccccccccc--ccccccccccCCc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI----GG-----VNTLACISKID--ANDKVSKIYPLPH 61 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i----nG-----~~~laC~t~v~--~~~~~~~~~p~~~ 61 (365)
|+||.|+.-. . =-.-+.+|..|.||+|.|.| || +++.||.+++. ++.+.+|||=|..
T Consensus 20 ~ll~~lR~~~---~-l~g~k~gC~~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEgl~~ 87 (467)
T TIGR02963 20 TLLDYLREDA---G-LTGTKEGCAEGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSLDGKAVVTVEDLRQ 87 (467)
T ss_pred CHHHHHHHhc---C-CCCCCcccCCCCCCceEEEEEecCCCCcccceEEehhhhhHHhcCCCEEEecCCCCC
Confidence 4566666422 1 13457899999999999999 99 99999999983 4666788888863
No 152
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=94.82 E-value=0.013 Score=55.22 Aligned_cols=18 Identities=22% Similarity=0.698 Sum_probs=15.6
Q ss_pred cccccccc----------cccccCcCCC
Q psy5769 273 VYRCHTIM----------NCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg----------~C~~vCP~gI 290 (365)
...|+.|+ +|+++||.+.
T Consensus 151 ~~kC~~C~~~~~~~g~~P~Cv~~Cp~~A 178 (225)
T TIGR03149 151 ADKCNFCRDTNLAEGKLPACVESCPTKA 178 (225)
T ss_pred cccCCCCCcchhhCCCCCcccccCccCC
Confidence 56899998 8999999764
No 153
>PRK13795 hypothetical protein; Provisional
Probab=94.61 E-value=0.0055 Score=66.07 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=32.9
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.....|+.||.|..+||........ -.+ .+. ...-.|+.||.|..+||.+
T Consensus 578 ~~~~~C~~Cg~C~~~CP~~ai~~~~-~~~-----------------------~~~--id~~~C~~Cg~C~~aCP~~ 627 (636)
T PRK13795 578 RRAAECVGCGVCVGACPTGAIRIEE-GKR-----------------------KIS--VDEEKCIHCGKCTEVCPVV 627 (636)
T ss_pred EccccCCCHhHHHHhCCcccEEeec-CCc-----------------------eEE--echhhcCChhHHHhhcCCC
Confidence 4567899999999999975421100 000 000 1234799999999999964
No 154
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=94.60 E-value=0.016 Score=32.70 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=13.7
Q ss_pred ccccccccccccCcCC
Q psy5769 274 YRCHTIMNCTRTCPKG 289 (365)
Q Consensus 274 ~~Ct~Cg~C~~vCP~g 289 (365)
..|+.|+.|..+||.+
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 4799999999999964
No 155
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=94.58 E-value=0.019 Score=57.09 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=26.3
Q ss_pred cccccccccc-------------ccccCcCCCC----hHHHHHHHHHHHhcc
Q psy5769 272 SVYRCHTIMN-------------CTRTCPKGLN----PGRAIAEIKKLLSGL 306 (365)
Q Consensus 272 ~l~~Ct~Cg~-------------C~~vCP~gI~----~~~~I~~lR~~l~~~ 306 (365)
.+..|+.|+. |+.+||.+.- ..+++...++++.+.
T Consensus 170 ~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el~~~a~~ri~~~ 221 (328)
T PRK10882 170 AIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREELLAEAKRRLALK 221 (328)
T ss_pred ceeecccccccchhhhhcCCCChhhhhccccceEeccHHHHHHHHHHHHHhc
Confidence 4578999999 9999997543 466777777776643
No 156
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=94.56 E-value=0.007 Score=52.56 Aligned_cols=51 Identities=22% Similarity=0.528 Sum_probs=32.9
Q ss_pred cchhcccCC-----cccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 215 GLYECILCA-----CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 215 ~~~~CI~CG-----~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
+...|+.|| .|..+||..... +.. .. .... ......|..||.|..+||.+
T Consensus 6 ~~~~C~gC~~~~~~~Cv~~CP~~ai~----~~~-------------~~------~~~~--~id~~~C~~Cg~Cv~~CP~~ 60 (132)
T TIGR02060 6 YPTKCDGCKAGEKTACVYICPNDLMH----LDT-------------EI------MKAY--NIEPDMCWECYSCVKACPQG 60 (132)
T ss_pred ccccccCccCCchhcCHhhcCccceE----ecC-------------CC------ceee--ecCchhCccHHHHHHhCCcC
Confidence 346899999 999999975421 000 00 0000 01245799999999999975
Q ss_pred C
Q psy5769 290 L 290 (365)
Q Consensus 290 I 290 (365)
.
T Consensus 61 A 61 (132)
T TIGR02060 61 A 61 (132)
T ss_pred c
Confidence 3
No 157
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=94.53 E-value=0.014 Score=60.49 Aligned_cols=46 Identities=24% Similarity=0.531 Sum_probs=34.3
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
+...|+.||.|.. ||.....-+ . ..-..-+|..||-|..+||.|.-
T Consensus 559 de~~C~gC~~C~~-Cpf~ais~~---k---------------------------a~v~~~~C~gCG~C~~aCp~gai 604 (622)
T COG1148 559 DEDKCTGCGICAE-CPFGAISVD---K---------------------------AEVNPLRCKGCGICSAACPSGAI 604 (622)
T ss_pred chhhhcCCcceee-CCCCceecc---c---------------------------cccChhhhCcccchhhhCCcccc
Confidence 4567999999999 998764210 0 01145789999999999998863
No 158
>PRK10194 ferredoxin-type protein; Provisional
Probab=94.52 E-value=0.011 Score=52.75 Aligned_cols=18 Identities=33% Similarity=0.946 Sum_probs=15.8
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|+.||.|..+||+..
T Consensus 65 ~~~C~~C~~C~~~CP~~a 82 (163)
T PRK10194 65 NNECSFCYACAQACPESL 82 (163)
T ss_pred CCCCCCchhhHhhCcchh
Confidence 367999999999999964
No 159
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=94.51 E-value=0.014 Score=57.77 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=20.7
Q ss_pred ccccccccCcCCCChHHHHHHHHHHHh
Q psy5769 278 TIMNCTRTCPKGLNPGRAIAEIKKLLS 304 (365)
Q Consensus 278 ~Cg~C~~vCP~gI~~~~~I~~lR~~l~ 304 (365)
.|+.|..+||.+.+....|..+=+..+
T Consensus 268 ~C~~C~~~CPf~~~~~s~iH~vvk~tv 294 (314)
T TIGR02486 268 GCGVCQAVCPFNKKPNSWIHDVVRSTV 294 (314)
T ss_pred CCCCCeeECCCCCCCcchHHHHHHHHh
Confidence 599999999999877777766544444
No 160
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=94.48 E-value=0.011 Score=58.84 Aligned_cols=51 Identities=20% Similarity=0.468 Sum_probs=35.1
Q ss_pred cchhcccCC--cccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 215 GLYECILCA--CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 215 ~~~~CI~CG--~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
....|+.|+ .|..+||+.....+...|. + . .....|+.|+.|..+||.++.
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~---------------------V--~---id~dkCigCg~Cv~aCP~gai 160 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSALTKDPKTGI---------------------V--H---YDKDVCTGCRYCMVACPFNVP 160 (328)
T ss_pred ccccCCCcCchhhHhhCCCCCEEecccCCc---------------------c--c---CCHHHcCcccHHHHhCCccce
Confidence 346899999 9999999875421100010 0 0 124579999999999998876
No 161
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=94.47 E-value=0.011 Score=58.40 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=34.3
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCcccccccc---------ccccc
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI---------MNCTR 284 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~C---------g~C~~ 284 (365)
.+...|+.||.|..+||..... +.+ .......|+.| .+|++
T Consensus 159 ID~ekCiGCg~Cv~ACPygAi~----~n~--------------------------~~~~~eKC~~C~~Rie~G~~PaCv~ 208 (321)
T TIGR03478 159 VDQERCKGYRYCVEACPYKKVY----FNP--------------------------QSQKSEKCIGCYPRIEKGIAPACVK 208 (321)
T ss_pred ECHHHCcchHHHHHhCCCCCcE----ecC--------------------------CCCchhhCCCchhhhccCCCCHHHh
Confidence 4567899999999999975421 110 01235689999 89999
Q ss_pred cCcCCC
Q psy5769 285 TCPKGL 290 (365)
Q Consensus 285 vCP~gI 290 (365)
+||.++
T Consensus 209 aCP~~A 214 (321)
T TIGR03478 209 QCPGRI 214 (321)
T ss_pred hcCccc
Confidence 999765
No 162
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.42 E-value=0.0088 Score=36.79 Aligned_cols=18 Identities=33% Similarity=0.848 Sum_probs=15.4
Q ss_pred cccccccccccccCcCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI 290 (365)
...|+.||.|..+||.+.
T Consensus 6 ~~~C~~Cg~C~~~Cp~~a 23 (24)
T PF12837_consen 6 PDKCIGCGDCVRVCPEGA 23 (24)
T ss_pred hhhCcChhHHHHhcchhc
Confidence 467999999999999753
No 163
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=94.40 E-value=0.016 Score=62.00 Aligned_cols=45 Identities=27% Similarity=0.548 Sum_probs=31.4
Q ss_pred ccchhcccCCcccc--cCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 214 DGLYECILCACCST--SCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~s--~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.+...|+.||.|.. +||+.... + ... ..+ . .|+.||.|.++||.+
T Consensus 547 id~~~C~~C~~C~~~~~CP~~~~~------------------~-------~~~--~i~--~--~C~~Cg~C~~~CP~~ 593 (595)
T TIGR03336 547 VDQDKCIGCKKCIKELGCPAIEPE------------------D-------KEA--VID--P--LCTGCGVCAQICPFD 593 (595)
T ss_pred EcCCcCCCccccccccCCCCcccc------------------C-------Ccc--eeC--C--CCcCHHHHHhhCccc
Confidence 45579999999999 99964210 0 000 011 2 599999999999976
No 164
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=94.28 E-value=0.011 Score=36.12 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=15.2
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
+...|+.||.|..+||...
T Consensus 4 d~~~C~~Cg~C~~~CP~~a 22 (24)
T PF00037_consen 4 DPDKCIGCGRCVEACPFDA 22 (24)
T ss_dssp ETTTSSS-THHHHHSTTSS
T ss_pred chHHCCCcchhhhhccccc
Confidence 3478999999999999864
No 165
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=94.28 E-value=0.01 Score=55.85 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=34.5
Q ss_pred cchhcccCCc--ccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 215 GLYECILCAC--CSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 215 ~~~~CI~CG~--C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
....|++|+. |..+||+.....+...| . +. .....|+.|+.|..+||.++.
T Consensus 90 ~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g---------------------~---v~--id~~~C~~C~~C~~aCP~~A~ 142 (225)
T TIGR03149 90 FRKSCQHCDNAPCVAVCPTGASFKDEETG---------------------I---VD--VHKDLCVGCQYCIAACPYRVR 142 (225)
T ss_pred CchhccCCcCcChHhhCCCCcEEEeCCCC---------------------e---EE--echhhCCcchHHHHhCCCCCc
Confidence 3578999996 99999987532110001 0 00 123579999999999999984
No 166
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=94.27 E-value=0.034 Score=55.18 Aligned_cols=34 Identities=29% Similarity=0.732 Sum_probs=27.0
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe-CCccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI-GGVNT 40 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i-nG~~~ 40 (365)
|||||+.+.+ +...++|++|+||+|.+++ .|...
T Consensus 284 slL~~~~~~g------i~~~~~C~~G~Cg~C~~~~~~G~v~ 318 (352)
T TIGR02160 284 SVLDAALRAR------PDLPFACKGGVCGTCRAKVLEGKVD 318 (352)
T ss_pred cHHHHHHHcC------CCCcCCCCCccCCCCEEEEeccccc
Confidence 6888887765 5577899999999999984 66544
No 167
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.21 E-value=0.011 Score=32.35 Aligned_cols=14 Identities=36% Similarity=1.070 Sum_probs=12.8
Q ss_pred cccCCcccccCCCc
Q psy5769 219 CILCACCSTSCPSY 232 (365)
Q Consensus 219 CI~CG~C~s~CP~~ 232 (365)
|+.||.|..+||+.
T Consensus 1 C~~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 1 CTGCGACVEVCPTG 14 (15)
T ss_pred CCCchHHHHHhcCC
Confidence 88999999999974
No 168
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=94.17 E-value=0.03 Score=54.62 Aligned_cols=33 Identities=21% Similarity=0.529 Sum_probs=22.5
Q ss_pred cccccccc---------cccccCcCCCC----hHHHHHHHHHHHhc
Q psy5769 273 VYRCHTIM---------NCTRTCPKGLN----PGRAIAEIKKLLSG 305 (365)
Q Consensus 273 l~~Ct~Cg---------~C~~vCP~gI~----~~~~I~~lR~~l~~ 305 (365)
...|+.|. +|+.+||.+.- ..+++...++++.+
T Consensus 150 ~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~~a~~r~~~ 195 (283)
T TIGR01582 150 PYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERAEKRVAD 195 (283)
T ss_pred hhhhcccccccccCCCChHhCcccHhhEEECCHHHHHHHHHHHHHh
Confidence 46788885 99999998743 34555555555554
No 169
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=94.05 E-value=0.039 Score=56.23 Aligned_cols=45 Identities=27% Similarity=0.571 Sum_probs=34.3
Q ss_pred CHHHHHHHhhhccCCCcccccCCCC-CCcCccEEEe-CCc-------------------ccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCRE-GICGSCAMNI-GGV-------------------NTLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~-~~CgsC~v~i-nG~-------------------~~laC~t~v~~~~ 51 (365)
|+|||+.+.+ +...++|+. |.||+|.|.| .|. .+|||.+.+...+
T Consensus 55 tLL~a~~~~g------i~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~d~ 120 (409)
T PRK05464 55 KLLGALASNG------IFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQDM 120 (409)
T ss_pred hHHHHHHHcC------CCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECCCE
Confidence 6888888776 335578995 9999999997 452 2689999886654
No 170
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=94.05 E-value=0.015 Score=55.42 Aligned_cols=20 Identities=20% Similarity=0.640 Sum_probs=16.3
Q ss_pred ccccccccc---------cccccCcCCCC
Q psy5769 272 SVYRCHTIM---------NCTRTCPKGLN 291 (365)
Q Consensus 272 ~l~~Ct~Cg---------~C~~vCP~gI~ 291 (365)
....|+.|+ +|+++||.+.-
T Consensus 155 ~~~KC~~C~~r~~~G~~PaCv~~CP~~Al 183 (244)
T PRK14993 155 TADKCTFCVHRLEAGLLPACVESCVGGAR 183 (244)
T ss_pred CcccCcCCcchhhCCCCcccchhcccCCE
Confidence 356899998 89999997653
No 171
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=94.01 E-value=0.018 Score=58.45 Aligned_cols=45 Identities=27% Similarity=0.549 Sum_probs=31.8
Q ss_pred ccchhcccCCccc--ccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 214 DGLYECILCACCS--TSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 214 ~~~~~CI~CG~C~--s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
.....|+.|+.|. .+||+..... + . .+ ....|..|+.|..+||.+
T Consensus 299 id~dkCi~Cg~C~~~~aCPt~AI~~--------------------~----~---~I----d~~~Ci~CGaCV~aCP~~ 345 (391)
T TIGR03287 299 YNPERCENCDPCLVEEACPVPAIKK--------------------D----G---TL----NTEDCFGCGYCAEICPGG 345 (391)
T ss_pred EchhhCcCCCCCcCCcCCCHhhEec--------------------c----c---ee----ChHhCcChHHHHhhCCcc
Confidence 4557899999995 8999764210 0 0 01 234699999999999975
No 172
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=93.95 E-value=0.041 Score=55.97 Aligned_cols=45 Identities=24% Similarity=0.553 Sum_probs=33.9
Q ss_pred CHHHHHHHhhhccCCCcccccCCCC-CCcCccEEEeC-Cc-------------------ccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCRE-GICGSCAMNIG-GV-------------------NTLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~-~~CgsC~v~in-G~-------------------~~laC~t~v~~~~ 51 (365)
|||+|+.+-+ +...++|+. |.||+|.|.|- |. .+|||.+.+...+
T Consensus 51 tlL~a~~~~g------i~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rLaCq~~~~~d~ 116 (405)
T TIGR01941 51 KLLNTLASNG------IFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRLSCQVKVKQDM 116 (405)
T ss_pred hHHHHHHHcC------CCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEEEeeCEECCCE
Confidence 5888888775 335668996 89999999973 42 2699999887654
No 173
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=93.83 E-value=0.017 Score=35.30 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=14.6
Q ss_pred cccccccccccccCcCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI 290 (365)
...|+.||.|..+||.+.
T Consensus 5 ~~~C~~Cg~C~~~CP~~a 22 (24)
T PF00037_consen 5 PDKCIGCGRCVEACPFDA 22 (24)
T ss_dssp TTTSSS-THHHHHSTTSS
T ss_pred hHHCCCcchhhhhccccc
Confidence 357999999999999874
No 174
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=93.66 E-value=0.014 Score=56.84 Aligned_cols=51 Identities=22% Similarity=0.415 Sum_probs=34.0
Q ss_pred cchhcccCCc--ccccCCC-ceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 215 GLYECILCAC--CSTSCPS-YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 215 ~~~~CI~CG~--C~s~CP~-~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
....|++|+. |..+||+ ...... ..|. +. .....|+.|+.|..+||.++.
T Consensus 89 ~~~~C~hC~~p~Cv~aCP~~gA~~~~-~~G~------------------------V~--id~dkCigC~~Cv~aCP~~a~ 141 (283)
T TIGR01582 89 RKDGCMHCREPGCLKACPAPGAIIQY-QNGI------------------------VD--FDHSKCIGCGYCIVGCPFNIP 141 (283)
T ss_pred CCccCCCCCCccccCCCCcCCeEEEc-CCCc------------------------EE--EeHHHCCcchHHHhhCCCCCc
Confidence 3467999998 9999997 322110 0110 00 123569999999999999876
Q ss_pred h
Q psy5769 292 P 292 (365)
Q Consensus 292 ~ 292 (365)
.
T Consensus 142 ~ 142 (283)
T TIGR01582 142 R 142 (283)
T ss_pred E
Confidence 3
No 175
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=93.55 E-value=0.069 Score=47.07 Aligned_cols=47 Identities=19% Similarity=0.463 Sum_probs=33.1
Q ss_pred CHHHHHHHhhhccCCCcccccCCC-CCCcCccEEEeCC-------------------------ccccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCR-EGICGSCAMNIGG-------------------------VNTLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~-~~~CgsC~v~inG-------------------------~~~laC~t~v~~~~~ 52 (365)
|+|++|.... -+.+...|. .|.||+|-|.|.. ..||||+..+.+.++
T Consensus 57 sLLeal~~~~-----~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~gsRLaCQi~v~~~ld 129 (143)
T PTZ00490 57 SLMHALRDVA-----KLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKETSRLACQVDLTPEMD 129 (143)
T ss_pred cHHHHHHHcC-----CCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCCCcEEeeeEEEecCCC
Confidence 5677776632 133556795 7999999999943 135999999987553
No 176
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=93.50 E-value=0.025 Score=52.88 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=15.0
Q ss_pred cccccccccccccCcCC
Q psy5769 273 VYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~g 289 (365)
...|+.||.|..+||.+
T Consensus 174 ~~~C~gCG~C~~~CP~~ 190 (213)
T TIGR00397 174 SAKCTGCGTCEKHCVLS 190 (213)
T ss_pred cccCCCcchhhHhCCCC
Confidence 45799999999999976
No 177
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=93.37 E-value=0.019 Score=55.16 Aligned_cols=18 Identities=39% Similarity=0.896 Sum_probs=15.9
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|+.||.|..+||+..
T Consensus 58 ~~~Ci~Cg~Cv~aCP~~a 75 (254)
T PRK09476 58 LSACIRCGLCVQACPYDT 75 (254)
T ss_pred hhhCcCchHHHHhCCccc
Confidence 378999999999999764
No 178
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=93.33 E-value=0.024 Score=60.31 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=33.8
Q ss_pred ccchhcccCCccc--ccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 214 DGLYECILCACCS--TSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 214 ~~~~~CI~CG~C~--s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
-+...|..||.|. +.||....... + .+ .++ .-..|..||.|.++||...
T Consensus 574 Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~-~k-------------------~~i-------d~~~C~GCg~C~~iCP~~a 624 (640)
T COG4231 574 VDEEKCTGCGDCIVLSGCPSIEPDPT-F-KK-------------------ARI-------DPSSCNGCGSCVEVCPSFA 624 (640)
T ss_pred echhhcCCcHHHHhhcCCceEeecCC-C-Cc-------------------eee-------cccccccchhhhhcCchhh
Confidence 4568999999998 89999863210 0 11 011 2345999999999999653
No 179
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=93.21 E-value=0.026 Score=58.19 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=34.7
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccc---------cccc
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIM---------NCTR 284 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg---------~C~~ 284 (365)
.+...|+.|+.|..+||.... ++.+ ....+..|+.|. +|++
T Consensus 211 ID~dkCiGCg~CV~ACPygAI----~~n~--------------------------~~g~~~KCd~C~~Rie~G~pPaCVe 260 (492)
T TIGR01660 211 IDQDKCRGWRMCISGCPYKKI----YFNW--------------------------KTGKSEKCIFCYPRIEAGQPTVCSE 260 (492)
T ss_pred EehhhccChHHHHHhCCCCCc----EecC--------------------------CCCccccCCCChhHHhCCCCCcchh
Confidence 455899999999999997642 1111 012356899995 7999
Q ss_pred cCcCCCC
Q psy5769 285 TCPKGLN 291 (365)
Q Consensus 285 vCP~gI~ 291 (365)
+||.++-
T Consensus 261 aCP~~Ar 267 (492)
T TIGR01660 261 TCVGRIR 267 (492)
T ss_pred hcChhhh
Confidence 9999883
No 180
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.20 E-value=0.029 Score=63.36 Aligned_cols=58 Identities=24% Similarity=0.427 Sum_probs=36.7
Q ss_pred cchhcccC----CcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILC----ACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~C----G~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+..+|..| |.|..+||......-+-.| +... ..+.. ....|+.||+|..+||.+-
T Consensus 884 ~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g-----------~~~~--------~~~~~--~~~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 884 EAARCLECNYVCEKCVDVCPNRANVSIAVPG-----------FQNR--------FQIVH--LDAMCNECGNCAQFCPWNG 942 (1019)
T ss_pred cccccCCcccccchhhhhCCcccccccccCC-----------cccC--------CceEE--cCccCccccchhhhCCCCC
Confidence 56799999 9999999987511000001 0000 00111 1377999999999999887
Q ss_pred ChH
Q psy5769 291 NPG 293 (365)
Q Consensus 291 ~~~ 293 (365)
.|.
T Consensus 943 ~py 945 (1019)
T PRK09853 943 KPY 945 (1019)
T ss_pred Ccc
Confidence 764
No 181
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=93.12 E-value=0.014 Score=48.22 Aligned_cols=47 Identities=28% Similarity=0.627 Sum_probs=27.8
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCcccccccc---------ccccc
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTI---------MNCTR 284 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~C---------g~C~~ 284 (365)
.+...||.||.|..+||..... +.+ .......|..| -+|++
T Consensus 37 id~~~CigC~~C~~aCP~~ai~----~~~--------------------------~~~~~~KCdlC~~r~~~G~~PaCv~ 86 (98)
T PF13247_consen 37 IDEDKCIGCGYCVEACPYGAIR----FDP--------------------------DTGKARKCDLCIDRIEEGEEPACVE 86 (98)
T ss_dssp E-TTTCCTHHHHHHH-TTS-EE----EET--------------------------TTTCEEE--TTHHHHTTT-S-HHHH
T ss_pred echhhccCchhhhhhhccCcce----eec--------------------------ccccCCcCceehhhhhcCCCChhHH
Confidence 3457899999999999987531 110 11246678888 78999
Q ss_pred cCcCCC
Q psy5769 285 TCPKGL 290 (365)
Q Consensus 285 vCP~gI 290 (365)
+||.+.
T Consensus 87 ~Cp~~A 92 (98)
T PF13247_consen 87 ACPTGA 92 (98)
T ss_dssp H-TTS-
T ss_pred hccccc
Confidence 999763
No 182
>PRK07118 ferredoxin; Validated
Probab=93.04 E-value=0.015 Score=56.69 Aligned_cols=47 Identities=21% Similarity=0.530 Sum_probs=32.4
Q ss_pred hhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 217 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
..|+.||.|..+||+..... .. + .. .. ....|+.|+.|..+||.++-
T Consensus 139 ~~CigCg~C~~aCp~~AI~~----~~------------g--------~~-~i---d~~~C~~Cg~Cv~aCP~~ai 185 (280)
T PRK07118 139 YGCLGLGSCVAACPFDAIHI----EN------------G--------LP-VV---DEDKCTGCGACVKACPRNVI 185 (280)
T ss_pred CCCcChhHHHHhCCccCeEc----cC------------C--------eE-EE---ChhhCcChhHHHHhcCccce
Confidence 47999999999999764311 00 0 00 01 23579999999999997543
No 183
>PRK09898 hypothetical protein; Provisional
Probab=92.94 E-value=0.028 Score=52.15 Aligned_cols=51 Identities=22% Similarity=0.409 Sum_probs=34.0
Q ss_pred cchhcccCC--cccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 215 GLYECILCA--CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 215 ~~~~CI~CG--~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
....|+.|+ .|..+||+..... .+ .+ ..+ .. ....|..|+.|..+||.+..
T Consensus 119 ~~~~C~~C~~~~C~~~CP~gAi~~----~~-------------~~----g~v--~v---d~~~CigC~~C~~aCP~~ai 171 (208)
T PRK09898 119 TADTCRQCKEPQCMNVCPIGAITW----QQ-------------KE----GCI--TV---DHKRCIGCSACTTACPWMMA 171 (208)
T ss_pred eCccCCCccCcchhhhCCcceEEe----ec-------------cC----CeE--Ee---ccccCCCcCcccccCCCCCC
Confidence 346899998 9999999765321 10 00 000 11 23579999999999998753
No 184
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=92.93 E-value=0.037 Score=49.14 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=11.7
Q ss_pred chhcccCCcccccCCCc
Q psy5769 216 LYECILCACCSTSCPSY 232 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~ 232 (365)
...|+.||.|..+||..
T Consensus 94 ~~~C~~C~~C~~aCP~~ 110 (161)
T TIGR02951 94 QDKCIGCRYCVWACPYG 110 (161)
T ss_pred HHhCCCchHHHhhCCCC
Confidence 35677777777777754
No 185
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.66 E-value=0.093 Score=56.57 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=26.6
Q ss_pred ccccccccc---cccccCcCCCChHHHHHHHHH
Q psy5769 272 SVYRCHTIM---NCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 272 ~l~~Ct~Cg---~C~~vCP~gI~~~~~I~~lR~ 301 (365)
...+|..|| -|...||.++++.+.|..+++
T Consensus 206 ea~rC~~C~~~~~C~~~CP~~~~i~~~~~~~~~ 238 (639)
T PRK12809 206 ESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQE 238 (639)
T ss_pred HHHHHhCCCCCCcccccCCCCCcHHHHHHHHHC
Confidence 467899998 799999999999999988764
No 186
>PRK07118 ferredoxin; Validated
Probab=92.46 E-value=0.024 Score=55.21 Aligned_cols=47 Identities=26% Similarity=0.567 Sum_probs=33.0
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
...|+.||.|..+||.....-+. .+.. .....|+.||.|..+||.+.
T Consensus 212 ~~~Ci~Cg~Cv~~CP~~AI~~~~------------------------~~~v----Id~~~C~~Cg~C~~~CP~~A 258 (280)
T PRK07118 212 EVGCIGCGKCVKACPAGAITMEN------------------------NLAV----IDQEKCTSCGKCVEKCPTKA 258 (280)
T ss_pred ccccccchHHHhhCCcCcEEEeC------------------------CcEE----EcCCcCCCHHHHHHhCCccc
Confidence 46799999999999976432100 0000 13468999999999999764
No 187
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=92.28 E-value=0.026 Score=54.04 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=31.0
Q ss_pred hhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC
Q psy5769 217 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK 288 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~ 288 (365)
..|+.||.|..+||.....- +. .... . .....|+.|+.|..+||.
T Consensus 169 ~~C~~C~~C~~~CP~~vi~~-----------------d~------~~~~-v---~~~~~C~~C~~C~~~Cp~ 213 (259)
T cd07030 169 EDCDGCGKCVEECPRGVLEL-----------------EE------GKVV-V---EDLEDCSLCKLCERACDA 213 (259)
T ss_pred hhCCChHHHHHhCCccceEc-----------------cC------CeeE-E---eChhhCcCchHHHHhCCC
Confidence 67999999999999865310 00 0000 0 123479999999999995
No 188
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.28 E-value=0.054 Score=61.26 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=15.0
Q ss_pred cccccccccccCcCCCC
Q psy5769 275 RCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 275 ~Ct~Cg~C~~vCP~gI~ 291 (365)
.|+.||.|..+||.+--
T Consensus 922 ~C~~CG~C~~vCP~~a~ 938 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGA 938 (1012)
T ss_pred cccccchHHHhCCCCcc
Confidence 59999999999998654
No 189
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=92.18 E-value=0.018 Score=54.44 Aligned_cols=51 Identities=27% Similarity=0.587 Sum_probs=34.4
Q ss_pred ccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCCh
Q psy5769 214 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNP 292 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~~ 292 (365)
.+...|+.||.|..+||....... + + .. .+ ....|..|+.|..+||.+.-+
T Consensus 171 id~~~C~~C~~C~~aCP~~ai~~~----------------~--~-----~~-~i----~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 171 VNQGLCMGCGTCAAACPTRAIEME----------------D--G-----RP-NV----NRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred EChhhCcChhHHHHhCCHhhEEEe----------------C--C-----cE-EE----ChhhccCHHHHHHHcCCCCcc
Confidence 445789999999999996532100 0 0 00 01 235699999999999986654
No 190
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=92.08 E-value=0.033 Score=53.51 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=14.7
Q ss_pred ccccccccccccCcCC
Q psy5769 274 YRCHTIMNCTRTCPKG 289 (365)
Q Consensus 274 ~~Ct~Cg~C~~vCP~g 289 (365)
..|+.||.|..+||.+
T Consensus 184 d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 184 DACTGCGKCEKACVLE 199 (254)
T ss_pred HHCcCcChhhHhcCCC
Confidence 5799999999999986
No 191
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.94 E-value=0.03 Score=59.25 Aligned_cols=17 Identities=29% Similarity=0.753 Sum_probs=15.0
Q ss_pred cccccccccccccCcCC
Q psy5769 273 VYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~g 289 (365)
...|+.||.|..+||.+
T Consensus 540 ~~~C~~Cg~C~~~CP~~ 556 (564)
T PRK12771 540 YDKCTGCHICADVCPCG 556 (564)
T ss_pred cccCcChhHHHhhcCcC
Confidence 46799999999999965
No 192
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=91.92 E-value=0.12 Score=60.18 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=43.3
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeC----------Cccccccccccc--ccccccccccCCc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIG----------GVNTLACISKID--ANDKVSKIYPLPH 61 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~in----------G~~~laC~t~v~--~~~~~~~~~p~~~ 61 (365)
|+||.|+.-. . =-.-+.+|.+|-||+|.|.|| |+++.||.+.+. ++.+.+|||=|..
T Consensus 22 ~ll~~LR~~~---~-l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~v~TvEgl~~ 90 (1330)
T TIGR02969 22 MLLPYLRKKL---R-LTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAAVTTVEGIGS 90 (1330)
T ss_pred cHHHHHHhhc---C-CCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCEEEecCCcCC
Confidence 4666666522 1 123567999999999999998 689999999984 4667788888863
No 193
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=91.90 E-value=0.049 Score=32.89 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=14.9
Q ss_pred ccccccccccccccCcC
Q psy5769 272 SVYRCHTIMNCTRTCPK 288 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~ 288 (365)
...+|+.|++|+.+||.
T Consensus 6 D~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 6 DLERCIGCGACEVACPV 22 (22)
T ss_pred ccccccCchhHHHhhCc
Confidence 36789999999999984
No 194
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.80 E-value=0.021 Score=61.64 Aligned_cols=20 Identities=20% Similarity=0.610 Sum_probs=17.1
Q ss_pred ccchhcccCCcccccCCCce
Q psy5769 214 DGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~ 233 (365)
.+..+|+.|+.|..+|+...
T Consensus 7 ~d~~~C~gC~~C~~aC~~~~ 26 (654)
T PRK12769 7 ANSQQCLGCHACEIACVMAH 26 (654)
T ss_pred EChHhCcChhHHHHHhhhhh
Confidence 35689999999999999854
No 195
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=91.77 E-value=0.021 Score=51.74 Aligned_cols=20 Identities=25% Similarity=0.637 Sum_probs=16.8
Q ss_pred ccchhcccCCcccccCCCce
Q psy5769 214 DGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~ 233 (365)
.+...|+.|+.|..+||...
T Consensus 7 ~d~~~C~gC~~C~~aC~~~~ 26 (181)
T PRK10330 7 ADASKCIGCRTCEVACVVSH 26 (181)
T ss_pred eCcccCcCccHHHHHHHHHH
Confidence 35678999999999999754
No 196
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=91.65 E-value=0.043 Score=49.67 Aligned_cols=20 Identities=30% Similarity=0.575 Sum_probs=16.5
Q ss_pred cchhcccCCcccccCCCcee
Q psy5769 215 GLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~ 234 (365)
+...|+.||.|..+||....
T Consensus 85 ~~~~C~~C~~C~~~CP~~ai 104 (181)
T PRK10330 85 MQERCIGCKTCVVACPYGAM 104 (181)
T ss_pred ChhhCCCcchhhhhCCccCe
Confidence 44689999999999997643
No 197
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=91.57 E-value=0.04 Score=48.88 Aligned_cols=50 Identities=24% Similarity=0.467 Sum_probs=31.9
Q ss_pred cchhcccCC--cccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCA--CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG--~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
....|+.|+ .|..+||+.........|. +. .....|..|+.|..+||.+.
T Consensus 60 ~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~------------------------~~--i~~~~C~~C~~C~~aCP~~a 111 (161)
T TIGR02951 60 ISISCNHCADPACVKNCPTGAMYKREEDGL------------------------VL--VDQDKCIGCRYCVWACPYGA 111 (161)
T ss_pred cCccCCCcCCcchHHhCCCCCEEeecCCCc------------------------EE--ECHHhCCCchHHHhhCCCCC
Confidence 346899999 9999999864321000000 00 12356888999999999764
No 198
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=91.54 E-value=0.056 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=17.7
Q ss_pred cchhcccCCcccccCCCceeC
Q psy5769 215 GLYECILCACCSTSCPSYWWN 235 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~ 235 (365)
+..+||.||+|+-+||.....
T Consensus 80 ~~ekCiGC~~C~~aCPfGai~ 100 (165)
T COG1142 80 DEEKCIGCKLCVVACPFGAIT 100 (165)
T ss_pred chhhccCcchhhhcCCcceEE
Confidence 457899999999999987653
No 199
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.48 E-value=0.24 Score=53.55 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=26.3
Q ss_pred ccccccccc---cccccCcCCCChHHHHHHHHH
Q psy5769 272 SVYRCHTIM---NCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 272 ~l~~Ct~Cg---~C~~vCP~gI~~~~~I~~lR~ 301 (365)
...+|..|+ -|...||.++++.+.|..+++
T Consensus 223 ~~~rc~~C~~~~~C~~~CP~~~~i~~~~~~~~~ 255 (654)
T PRK12769 223 EASRCLKCGEHSICEWTCPLHNHIPQWIELVKA 255 (654)
T ss_pred HHHhhhcCCCCCCccccCCCCCcHHHHHHHHHC
Confidence 468999998 499999999999999988764
No 200
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=91.36 E-value=0.075 Score=48.51 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=36.2
Q ss_pred cccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 213 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 213 l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
+.+...||.|-.|..+||+-... .++.++ ..+ ....||.|+.|...||.+.-
T Consensus 111 ~i~e~~ciGCtkCiqaCpvdAiv----g~~~~m-------------------htv----~~dlCTGC~lCva~CPtdci 162 (198)
T COG2878 111 LIDEANCIGCTKCIQACPVDAIV----GATKAM-------------------HTV----IADLCTGCDLCVAPCPTDCI 162 (198)
T ss_pred EecchhccccHHHHHhCChhhhh----ccchhH-------------------HHH----HHHHhcCCCcccCCCCCCce
Confidence 34568899999999999997642 122221 111 12359999999999998753
No 201
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=90.52 E-value=0.1 Score=40.15 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=16.7
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
....|+.||+|..+||+..
T Consensus 48 ~~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred CCccCCCcChHhhhcCCCC
Confidence 4578999999999999874
No 202
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=90.50 E-value=0.045 Score=52.57 Aligned_cols=47 Identities=26% Similarity=0.625 Sum_probs=31.3
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
...|+.||.|..+||..... . +. + .. .+. ..-.|+.|+.|..+||.+
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~----~-------------~~-~-----~~-~v~---~~~~C~~C~~Ci~~CP~~ 214 (263)
T PRK00783 168 SEDCDECEKCVEACPRGVLE----L-------------KE-G-----KL-VVT---DLLNCSLCKLCERACPGK 214 (263)
T ss_pred cccCCchHHHHHhCCccccE----e-------------cC-C-----eE-EEe---ChhhCCCchHHHHhCCCC
Confidence 47899999999999975321 0 00 0 00 011 234699999999999954
No 203
>PLN02906 xanthine dehydrogenase
Probab=90.47 E-value=0.2 Score=58.46 Aligned_cols=56 Identities=21% Similarity=0.445 Sum_probs=43.3
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEeC------C----cccccccccc--cccccccccccCCc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIG------G----VNTLACISKI--DANDKVSKIYPLPH 61 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~in------G----~~~laC~t~v--~~~~~~~~~~p~~~ 61 (365)
|+||.|+. . .+ -.-+.+|..|-||+|.|.|| | +++.||.+.+ -++.+.+|||=|..
T Consensus 3 ~ll~~LR~-~-~l---~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~ 70 (1319)
T PLN02906 3 TLLEYLRD-L-GL---TGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGN 70 (1319)
T ss_pred cHHHHHHh-C-CC---CCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCC
Confidence 57787775 2 11 33578999999999999999 5 6999999998 34566778888863
No 204
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=90.37 E-value=0.061 Score=56.01 Aligned_cols=63 Identities=21% Similarity=0.433 Sum_probs=36.0
Q ss_pred hcccchhcccCCcccccCCCceeCCccc---CCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC
Q psy5769 212 KLDGLYECILCACCSTSCPSYWWNGEKY---LGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK 288 (365)
Q Consensus 212 ~l~~~~~CI~CG~C~s~CP~~~~~~~~~---lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~ 288 (365)
++-+ ..|+.||+|.++||+-.- ++| +|-+ ++. ..+- -+.... ........|+.||.|..+||.
T Consensus 220 ryVd-d~CtgCg~C~~vCPve~~--nefn~Gl~~~---kAi---y~p~----~qaVp~-~~~Id~~~c~~c~~C~~ac~~ 285 (622)
T COG1148 220 RYVD-DKCTGCGACSEVCPVEVP--NEFNEGLGKR---KAI---YIPF----PQAVPL-NYNIDPKHCIECGLCEKACPN 285 (622)
T ss_pred cccc-ccccccccccccCCcccC--cccccccccc---eee---eccc----hhhccc-ccccChhhhccchhhhhcCCc
Confidence 3434 899999999999999642 122 2211 010 0000 000110 111356789999999999994
No 205
>PLN00192 aldehyde oxidase
Probab=90.05 E-value=0.24 Score=57.86 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=42.9
Q ss_pred CHHHHHHHhhhccCCCcccccCCCCCCcCccEEEe----------CCcccccccccc--cccccccccccCCc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI----------GGVNTLACISKI--DANDKVSKIYPLPH 61 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C~~~~CgsC~v~i----------nG~~~laC~t~v--~~~~~~~~~~p~~~ 61 (365)
|+|+.|+.-. . =-.-..+|..|-||+|.|.| +|+++-||.+.+ -++.+.+|||=|.+
T Consensus 25 ~Ll~~LR~~~---~-ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEgl~~ 93 (1344)
T PLN00192 25 TLLEFLRTQT---P-FKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNGCSITTSEGLGN 93 (1344)
T ss_pred cHHHHHHHhh---C-CCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCCCEEEeecCcCC
Confidence 4566665422 1 12346799999999999999 699999999998 44666788888863
No 206
>PRK13984 putative oxidoreductase; Provisional
Probab=89.96 E-value=0.19 Score=53.53 Aligned_cols=20 Identities=25% Similarity=0.855 Sum_probs=17.3
Q ss_pred ccchhcccCCcccccCCCce
Q psy5769 214 DGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~ 233 (365)
.+..+|+.||.|..+||...
T Consensus 182 ~~~~~C~~Cg~C~~~CP~~~ 201 (604)
T PRK13984 182 QEAARCVECGICTDTCPAHM 201 (604)
T ss_pred HhhhhhcCCCcccccCCCCC
Confidence 45688999999999999864
No 207
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=89.87 E-value=0.29 Score=44.33 Aligned_cols=20 Identities=35% Similarity=0.861 Sum_probs=16.6
Q ss_pred cchhcccCCcccccCCCcee
Q psy5769 215 GLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~ 234 (365)
+...|+.||.|..+||....
T Consensus 71 ~~~~C~~Cg~C~~vCP~~AI 90 (180)
T PRK12387 71 NLGRCIFCGRCEEVCPTAAI 90 (180)
T ss_pred ccccCcCccchhhhcCcCce
Confidence 34689999999999998643
No 208
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=89.68 E-value=0.072 Score=50.86 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=33.4
Q ss_pred chhcccCCc--ccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 216 LYECILCAC--CSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 216 ~~~CI~CG~--C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
...|++|+. |..+||+.....+ ..| +. . .....|..|+.|..+||.+.-
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~~-~~G----------------------~v-~---id~~~CigC~~Cv~aCP~~Ai 147 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQR-EDG----------------------IV-V---VDNKRCVGCAYCVQACPYDAR 147 (244)
T ss_pred chhcCCcCCccCccccCCCCEEEC-CCC----------------------CE-E---EcHHHCCCHHHHHHhcCCCCC
Confidence 468999996 9999997643110 001 00 0 123579999999999998864
No 209
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=89.54 E-value=0.093 Score=37.41 Aligned_cols=16 Identities=38% Similarity=0.991 Sum_probs=11.1
Q ss_pred cchhcccCCcccccCC
Q psy5769 215 GLYECILCACCSTSCP 230 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP 230 (365)
+..+|+.||.|..+||
T Consensus 37 ~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 37 DPERCIGCGACVEVCP 52 (52)
T ss_dssp -TTT--TTSHHHHH-T
T ss_pred CcccccccChhhhhCc
Confidence 4678999999999998
No 210
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=89.51 E-value=0.12 Score=37.06 Aligned_cols=19 Identities=32% Similarity=0.807 Sum_probs=14.0
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
....|+.||.|..+||+..
T Consensus 36 ~~~~C~~Cg~C~~~CP~~A 54 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGA 54 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-
T ss_pred CCCccccHhHHHHHcchhh
Confidence 4578999999999999853
No 211
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=89.29 E-value=0.081 Score=52.15 Aligned_cols=48 Identities=29% Similarity=0.531 Sum_probs=33.9
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
+...|..||.|..+||+....- .| ..+. -....|..||.|..+||..+
T Consensus 170 ~~E~c~gc~~cv~~C~~gAI~~---~~-----------------------~~l~--id~~~Ci~Cg~Ci~~Cp~~~ 217 (317)
T COG2221 170 DEELCRGCGKCVKVCPTGAITW---DG-----------------------KKLK--IDGSKCIGCGKCIRACPKAA 217 (317)
T ss_pred CHHHhchhHhHHHhCCCCceee---cc-----------------------ceEE--EehhhccCccHHhhhCChhh
Confidence 4478999999999999986421 11 0011 13567999999999999433
No 212
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=89.26 E-value=0.3 Score=33.74 Aligned_cols=25 Identities=28% Similarity=0.721 Sum_probs=19.0
Q ss_pred ccCCCCCCcCccEEEeCCc--cccccc
Q psy5769 20 RRSCREGICGSCAMNIGGV--NTLACI 44 (365)
Q Consensus 20 ~~~C~~~~CgsC~v~inG~--~~laC~ 44 (365)
|..|..|+|++|.+.+.+. ..+.|.
T Consensus 3 ~M~CG~G~C~~C~v~~~~~~~~~~vC~ 29 (40)
T PF10418_consen 3 RMACGVGACGGCVVPVKDGDGYKRVCK 29 (40)
T ss_dssp --SSSSSSS-TTEEECSSTTSEEETTT
T ss_pred cccCCCcEeCCcEeeeecCCcCEEEeC
Confidence 4679999999999999876 677774
No 213
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.06 E-value=0.16 Score=54.73 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=15.3
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
+...|+.||.|..+||...
T Consensus 83 d~~~C~gC~~C~~~CP~~a 101 (639)
T PRK12809 83 DEQKCIGCKRCAIACPFGV 101 (639)
T ss_pred ChhhCcchhhHhhhcCCCC
Confidence 3467999999999999653
No 214
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=89.03 E-value=0.033 Score=45.94 Aligned_cols=50 Identities=22% Similarity=0.475 Sum_probs=29.8
Q ss_pred chhcccCC--cccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 216 LYECILCA--CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 216 ~~~CI~CG--~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
...|.+|. .|.++||+.....++-.| .+ . .....|+.|+.|..+||.++.
T Consensus 6 ~~~C~hC~~ppC~~~CP~~Ai~~~~~~G---------------------~V--~---id~~~CigC~~C~~aCP~~ai 57 (98)
T PF13247_consen 6 PVQCRHCEDPPCVEACPTGAIYKDPEDG---------------------IV--V---IDEDKCIGCGYCVEACPYGAI 57 (98)
T ss_dssp EEC---BSS-HHHHHCTTTSEEEETTTS----------------------E--E---E-TTTCCTHHHHHHH-TTS-E
T ss_pred CCcCcCcCCCchhhhCCccceEEEcCCC---------------------eE--E---echhhccCchhhhhhhccCcc
Confidence 45799997 999999998653211111 00 0 134679999999999998854
No 215
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=88.39 E-value=0.33 Score=44.77 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=26.4
Q ss_pred cccccccccccccCcCCCC----hHHHHHHHHHHHh
Q psy5769 273 VYRCHTIMNCTRTCPKGLN----PGRAIAEIKKLLS 304 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI~----~~~~I~~lR~~l~ 304 (365)
+..|.+||.|+..||++.- +..+|..+|..++
T Consensus 38 l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~ 73 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLV 73 (195)
T ss_pred HhHhhccCcccCCCCCcccCCCCHHHHHHHHHcccH
Confidence 6679999999999998764 6788888877555
No 216
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=88.30 E-value=0.3 Score=50.70 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=27.3
Q ss_pred ccccccccccccccCcCCCChHHHHHHHHHH
Q psy5769 272 SVYRCHTIMNCTRTCPKGLNPGRAIAEIKKL 302 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~~ 302 (365)
....|..||.|+++||.+|.|..++..++..
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~~ 402 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDILPTQLLRALIVG 402 (448)
T ss_pred CCcceeecCcHhhcCCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999999877653
No 217
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=88.28 E-value=0.12 Score=49.13 Aligned_cols=57 Identities=30% Similarity=0.599 Sum_probs=42.3
Q ss_pred hcccchhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 212 KLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 212 ~l~~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
.+..-.-|+.||.|.+.||+.... -.||.+ ...+|.-||+|...||+.+-
T Consensus 185 ll~qg~~C~G~~TC~A~CP~~ai~---c~Gc~g---------------------------~~~~~~~~Ga~~v~~~rs~~ 234 (247)
T COG1941 185 LLEQGLPCMGCGTCAASCPSRAIP---CRGCRG---------------------------NIPRCIKCGACFVSCPRSKG 234 (247)
T ss_pred eecCCCcccCchhhhccCCccCCc---ccCCcC---------------------------CcccchhhhHHHHHHhHHhh
Confidence 344556899999999999998642 234421 35679999999999998877
Q ss_pred hHHHHHHH
Q psy5769 292 PGRAIAEI 299 (365)
Q Consensus 292 ~~~~I~~l 299 (365)
+ +++.+|
T Consensus 235 ~-ei~~~l 241 (247)
T COG1941 235 P-EIIEEL 241 (247)
T ss_pred H-HHHHHh
Confidence 7 555544
No 218
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=88.23 E-value=0.047 Score=56.39 Aligned_cols=20 Identities=25% Similarity=0.695 Sum_probs=17.6
Q ss_pred cccccccccccccCcCCCCh
Q psy5769 273 VYRCHTIMNCTRTCPKGLNP 292 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI~~ 292 (365)
...|+.|+.|..+||.+|+.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~ 249 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDI 249 (434)
T ss_pred CCCCCChhhhHHhCCCCCEe
Confidence 56899999999999999753
No 219
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=87.65 E-value=0.16 Score=50.81 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=31.4
Q ss_pred hhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 217 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
..|..||.|.++||+...... .+..+ ..+ ......|..||.|..+||.+
T Consensus 181 ~~~c~~~~Cv~~CP~~Ai~~~---------------~~~~~----~~~-----~id~~~Ci~Cg~Ci~~CP~~ 229 (341)
T TIGR02066 181 RNVCEIPSVVAACPTGALKPR---------------RDGKN----KSL-----EVDVEKCIYCGNCYTMCPAM 229 (341)
T ss_pred HhhcCCCceEeeCchhhceec---------------ccCCC----Cce-----eeccccCCcCCchHHhCchh
Confidence 347788999999998753210 00000 011 11357899999999999964
No 220
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=87.64 E-value=0.13 Score=46.33 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=16.7
Q ss_pred cccccccccccccCcCCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI~ 291 (365)
...|..||.|..+||.|+-
T Consensus 81 ~ekCiGC~~C~~aCPfGai 99 (165)
T COG1142 81 EEKCIGCKLCVVACPFGAI 99 (165)
T ss_pred hhhccCcchhhhcCCcceE
Confidence 4689999999999998864
No 221
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=87.54 E-value=0.31 Score=50.57 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=27.1
Q ss_pred CccccccccccccccCcCCCChHHHHHHHHH
Q psy5769 271 FSVYRCHTIMNCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 271 ~~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR~ 301 (365)
.....|..||.|.++||+++.+..++..++.
T Consensus 370 ~~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~ 400 (447)
T TIGR01936 370 GGERAMIPIGIYERVMPLDIPPTLLLKALIA 400 (447)
T ss_pred CCccceeECChHhhcCCCCCCHHHHHHHHHc
Confidence 3456799999999999999999999987765
No 222
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=87.45 E-value=0.27 Score=49.15 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=35.2
Q ss_pred hhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 217 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
..|-.|..|..+||+..........++.-+ .|........ ..+ +.... .+.++ .|+-|..+||.+
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~~~~ci-s~lt~~~~~~--p~e-~r~~~-~n~iy---gCd~C~~vCPwn 249 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVDARRCI-SYLTIEKGGA--PEE-FRPLI-GNRIY---GCDICQKVCPWN 249 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccchhHHh-hhhhhhccCC--cHH-HHHhc-cCcee---cCchHHHhCCcc
Confidence 789999999999999876543333332222 1111111111 111 11111 12333 678888999976
No 223
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=87.28 E-value=0.24 Score=46.16 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=36.9
Q ss_pred ccchhcccC--CcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCCC
Q psy5769 214 DGLYECILC--ACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 214 ~~~~~CI~C--G~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
.....|.+| --|+.+||+......+--| + + ...-..|+.|+.|..+||.|++
T Consensus 64 ~~~~~C~HC~~ppCv~vCPtgA~~k~~~dG----------------------i--V--~vd~d~CIGC~yCi~ACPyga~ 117 (203)
T COG0437 64 YLSISCMHCEDPPCVKVCPTGALFKREEDG----------------------I--V--LVDKDLCIGCGYCIAACPYGAP 117 (203)
T ss_pred EecccccCCCCCcccccCCCcceEEecCCC----------------------E--E--EecCCcccCchHHHhhCCCCCc
Confidence 445789999 5799999998642110011 1 1 0135679999999999999986
Q ss_pred hH
Q psy5769 292 PG 293 (365)
Q Consensus 292 ~~ 293 (365)
.-
T Consensus 118 ~~ 119 (203)
T COG0437 118 QF 119 (203)
T ss_pred ee
Confidence 43
No 224
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=86.94 E-value=0.29 Score=36.44 Aligned_cols=16 Identities=38% Similarity=0.945 Sum_probs=11.3
Q ss_pred chhcccCCcccccCCC
Q psy5769 216 LYECILCACCSTSCPS 231 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~ 231 (365)
...|+.||.|..+||+
T Consensus 38 ~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 38 PDKCIGCGLCVKVCPV 53 (59)
T ss_dssp -TT--S-SCCCCCSSS
T ss_pred cccCcCcCcccccCCC
Confidence 3789999999999997
No 225
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=86.07 E-value=0.15 Score=48.80 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=31.5
Q ss_pred hcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCCC
Q psy5769 218 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~gI 290 (365)
--+.++-|...||.... ++..+. . ..++ +. .+....|+.|+.|.++||.+.
T Consensus 167 ~~~~r~~C~~~CP~Ga~-----~~~~~~-----~----------~~~~-i~-~~~~~~C~~C~~C~~vCP~~~ 217 (255)
T TIGR02163 167 LFSERGWCGHLCPLGAF-----YGLIGR-----K----------SLIK-IA-ASDREKCTNCMDCFNVCPEPQ 217 (255)
T ss_pred HhcCCchhhCcCCCcch-----hhhhhc-----c----------CceE-EE-eeccccCeEcCCccCcCCCCc
Confidence 35678999999998753 221110 0 0000 10 012467999999999999874
No 226
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=86.02 E-value=0.3 Score=47.39 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=27.3
Q ss_pred ccCCCcccccCCCCCCcCccEEEeCCcccccc
Q psy5769 12 EMDPTLTFRRSCREGICGSCAMNIGGVNTLAC 43 (365)
Q Consensus 12 ~~d~~l~~~~~C~~~~CgsC~v~inG~~~laC 43 (365)
..-.+|-+|..|..|.||+|.|..+|-..++|
T Consensus 240 ~i~~~l~~~m~cg~g~c~~c~~~~~~~~~~~c 271 (289)
T PRK08345 240 RIYVTLERRMRCGIGKCGHCIVGTSTSIKYVC 271 (289)
T ss_pred HEEEEehhcccccCcccCCCccCCCCcceEEe
Confidence 34567889999999999999999988556888
No 227
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=86.00 E-value=0.27 Score=44.68 Aligned_cols=20 Identities=35% Similarity=0.841 Sum_probs=17.9
Q ss_pred cchhcccCCcccccCCCcee
Q psy5769 215 GLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~ 234 (365)
++.+||-||.|.++||+...
T Consensus 93 n~grCIfCg~C~e~CPt~Al 112 (172)
T COG1143 93 NLGRCIFCGLCVEVCPTGAL 112 (172)
T ss_pred ccccccccCchhhhCchhhh
Confidence 56899999999999999864
No 228
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=85.17 E-value=0.28 Score=35.00 Aligned_cols=18 Identities=28% Similarity=0.763 Sum_probs=11.8
Q ss_pred cchhcccCCcccccCCCc
Q psy5769 215 GLYECILCACCSTSCPSY 232 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~ 232 (365)
+...|+.||.|..+||+.
T Consensus 34 ~~~~C~~C~~C~~~CP~~ 51 (52)
T PF12838_consen 34 DPDKCTGCGACVEVCPTG 51 (52)
T ss_dssp TGGG----SHHHHHTTTS
T ss_pred echhCcCcChhhhhCcCc
Confidence 467899999999999974
No 229
>KOG3256|consensus
Probab=84.62 E-value=0.32 Score=43.85 Aligned_cols=21 Identities=29% Similarity=0.757 Sum_probs=18.2
Q ss_pred ccchhcccCCcccccCCCcee
Q psy5769 214 DGLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~ 234 (365)
.++..||-||.|..+||+...
T Consensus 147 IDmtkCIyCG~CqEaCPvdai 167 (212)
T KOG3256|consen 147 IDMTKCIYCGFCQEACPVDAI 167 (212)
T ss_pred ccceeeeeecchhhhCCccce
Confidence 367899999999999999764
No 230
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=84.36 E-value=0.45 Score=43.31 Aligned_cols=19 Identities=37% Similarity=0.871 Sum_probs=16.5
Q ss_pred chhcccCCcccccCCCcee
Q psy5769 216 LYECILCACCSTSCPSYWW 234 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~ 234 (365)
...|+.||.|..+||....
T Consensus 72 ~~~C~~Cg~C~~~CPt~AI 90 (181)
T PRK08222 72 LGRCIYCGRCEEVCPTRAI 90 (181)
T ss_pred cCcCcCCCCcccccCcCeE
Confidence 4689999999999998754
No 231
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=84.28 E-value=0.88 Score=39.64 Aligned_cols=30 Identities=27% Similarity=0.647 Sum_probs=22.6
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHH
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRW 251 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~ 251 (365)
.+..|..||.|..+||.. +.+..++..+|.
T Consensus 44 ~~~~C~~Cg~C~~~CP~~-------i~~~~~i~~~R~ 73 (144)
T TIGR03290 44 DLWMCTTCYTCQERCPRD-------VKITDIIKALRN 73 (144)
T ss_pred CCCcCcCcCchhhhcCCC-------CCHHHHHHHHHH
Confidence 356899999999999986 345556666664
No 232
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=83.64 E-value=0.46 Score=51.86 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=20.6
Q ss_pred cchhcccCCcccccCCCceeCCcccCC
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLG 241 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lg 241 (365)
..++|..||.|+.+||+........+|
T Consensus 190 ~~SSCVsCG~CvtVCP~nALmek~m~g 216 (978)
T COG3383 190 NESSCVSCGACVTVCPVNALMEKSMLG 216 (978)
T ss_pred ccccccccCccceecchhhhhhhhhhc
Confidence 357899999999999998765433443
No 233
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=83.60 E-value=0.31 Score=35.74 Aligned_cols=19 Identities=32% Similarity=0.773 Sum_probs=11.2
Q ss_pred ccchhcccCCcccccCCCc
Q psy5769 214 DGLYECILCACCSTSCPSY 232 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~ 232 (365)
..+..|+.||.|..+||..
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp TTTTT--S--HHHHH-TT-
T ss_pred cccccCcCcCcCcccccCC
Confidence 4578999999999999975
No 234
>PLN00071 photosystem I subunit VII; Provisional
Probab=83.00 E-value=0.37 Score=37.59 Aligned_cols=27 Identities=30% Similarity=0.819 Sum_probs=20.4
Q ss_pred chhcccCCcccccCCCceeCCcccCCH
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGP 242 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP 242 (365)
...|+.||.|..+||+....-..|.||
T Consensus 45 ~~~C~~Cg~C~~~CP~~Ai~~~~~~~~ 71 (81)
T PLN00071 45 TEDCVGCKRCESACPTDFLSVRVYLGH 71 (81)
T ss_pred CCcCcChhhHHhhcCCccceEeeeecc
Confidence 357999999999999876543445555
No 235
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=82.70 E-value=0.76 Score=44.33 Aligned_cols=35 Identities=26% Similarity=0.580 Sum_probs=28.5
Q ss_pred CcccccCCCCCCcCccEEEeCCccccccc-cccccc
Q psy5769 16 TLTFRRSCREGICGSCAMNIGGVNTLACI-SKIDAN 50 (365)
Q Consensus 16 ~l~~~~~C~~~~CgsC~v~inG~~~laC~-t~v~~~ 50 (365)
||.-|..|..|+||+|++...|...++|. -+|-+.
T Consensus 210 sle~~M~CG~G~C~~C~v~~~~~~~~~C~dGPvF~~ 245 (281)
T PRK06222 210 SLNPIMVDGTGMCGACRVTVGGETKFACVDGPEFDG 245 (281)
T ss_pred ECcccccCcccccceeEEEECCCEEEEeCCCCeeeC
Confidence 67788899999999999999886578997 455443
No 236
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=82.47 E-value=0.35 Score=34.80 Aligned_cols=16 Identities=38% Similarity=1.105 Sum_probs=8.5
Q ss_pred hhcccCCcccccCCCc
Q psy5769 217 YECILCACCSTSCPSY 232 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~ 232 (365)
..|+.||.|..+||+.
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 8999999999999974
No 237
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=82.23 E-value=0.31 Score=36.48 Aligned_cols=16 Identities=38% Similarity=0.885 Sum_probs=13.9
Q ss_pred cccccccccccCcCCC
Q psy5769 275 RCHTIMNCTRTCPKGL 290 (365)
Q Consensus 275 ~Ct~Cg~C~~vCP~gI 290 (365)
.|.+|+.|+++||.+.
T Consensus 1 ~C~~C~~C~~~CP~~A 16 (67)
T PF13484_consen 1 FCITCGKCAEACPTGA 16 (67)
T ss_pred CCcchhHHHHhCcHhh
Confidence 4999999999999653
No 238
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=82.23 E-value=1 Score=47.32 Aligned_cols=22 Identities=36% Similarity=0.892 Sum_probs=18.6
Q ss_pred hcccchhcccCCcccccCCCce
Q psy5769 212 KLDGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 212 ~l~~~~~CI~CG~C~s~CP~~~ 233 (365)
....+..||+||.|..+||+..
T Consensus 399 ~~~~l~dCIECg~Ca~vCPs~i 420 (529)
T COG4656 399 EEHNLLDCIECGACAYVCPSNI 420 (529)
T ss_pred HHHHhhhhhhhCcchhcCCCCC
Confidence 3457789999999999999973
No 239
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=82.21 E-value=0.58 Score=45.17 Aligned_cols=20 Identities=25% Similarity=0.678 Sum_probs=16.9
Q ss_pred ccccccccccccccCcCCCC
Q psy5769 272 SVYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~gI~ 291 (365)
....|+.|+.|..+||.++.
T Consensus 206 d~~~C~~C~~C~~~CP~~~i 225 (271)
T PRK09477 206 DRQKCTRCMDCFHVCPEPQV 225 (271)
T ss_pred CcccCcccCCcCCcCCCcce
Confidence 45679999999999998753
No 240
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=80.95 E-value=1.2 Score=46.57 Aligned_cols=52 Identities=33% Similarity=0.584 Sum_probs=37.9
Q ss_pred CHHHHHHHhhhccCCCcccccCC-CCCCcCccEEEeC-Cc-----------------ccccccccccccccccccccC
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSC-REGICGSCAMNIG-GV-----------------NTLACISKIDANDKVSKIYPL 59 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C-~~~~CgsC~v~in-G~-----------------~~laC~t~v~~~~~~~~~~p~ 59 (365)
|||||.++++. -.|+-| .-|.||-|-|.|- |. .+|||+++|. +..+|.|-|-
T Consensus 19 ~il~aar~~gv------~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~-gd~~i~ip~e 89 (614)
T COG3894 19 TILDAARRLGV------YIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL-GDLVIFIPPE 89 (614)
T ss_pred hHHHHHHhhCc------eEeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhhc-CceEEEcCch
Confidence 68999999984 357779 5599999999863 21 4699999997 3335555553
No 241
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=80.87 E-value=1.4 Score=44.33 Aligned_cols=30 Identities=23% Similarity=0.617 Sum_probs=22.5
Q ss_pred cchhcccCCcccccCCCceeCCcccCCHHHHHHHHHH
Q psy5769 215 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRW 251 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~ 251 (365)
....|+.||+|..+||+. +.+..++..++.
T Consensus 305 g~~~CvgCGrC~~~CP~~-------I~i~~~i~~lr~ 334 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEY-------ISFSNCINKLTD 334 (344)
T ss_pred chhhCcCcCccccccCCC-------CCHHHHHHHHHH
Confidence 456899999999999986 455556655543
No 242
>PRK02651 photosystem I subunit VII; Provisional
Probab=80.56 E-value=0.42 Score=37.18 Aligned_cols=27 Identities=33% Similarity=0.850 Sum_probs=20.9
Q ss_pred hhcccCCcccccCCCceeCCcccCCHH
Q psy5769 217 YECILCACCSTSCPSYWWNGEKYLGPA 243 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~~~~~lgP~ 243 (365)
..|+.||.|..+||.....-..|+||+
T Consensus 46 ~~C~~Cg~C~~~CP~~ai~~~~~~~~~ 72 (81)
T PRK02651 46 EDCVGCKRCETACPTDFLSIRVYLGAE 72 (81)
T ss_pred CcCCChhhhhhhcCCCceEEEEEeccc
Confidence 579999999999998754334567774
No 243
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=79.59 E-value=0.65 Score=53.40 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=36.8
Q ss_pred ccchhcccCCcccc--cCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccc-cCcCCC
Q psy5769 214 DGLYECILCACCST--SCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTR-TCPKGL 290 (365)
Q Consensus 214 ~~~~~CI~CG~C~s--~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~-vCP~gI 290 (365)
.+...|..||.|.. .||.......+ +|- . ..+ .-..|..|+.|.+ +||+-+
T Consensus 626 In~~vCegCg~C~~~s~C~ai~~~~t~-~gr-------------------K--~~I----d~s~Cn~~~~C~~G~CPsfv 679 (1159)
T PRK13030 626 INEAVCEGCGDCGVQSNCLSVEPVETP-FGR-------------------K--RRI----DQSSCNKDFSCVNGFCPSFV 679 (1159)
T ss_pred EcccccCCchhhhhccCCcceeecccc-CCc-------------------c--EEE----CHHHCCCccccccCCCCCCe
Confidence 45678999999985 89998632211 110 0 011 3467999999999 999877
Q ss_pred ChH
Q psy5769 291 NPG 293 (365)
Q Consensus 291 ~~~ 293 (365)
-..
T Consensus 680 tv~ 682 (1159)
T PRK13030 680 TVE 682 (1159)
T ss_pred Eec
Confidence 653
No 244
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=78.30 E-value=1.7 Score=43.43 Aligned_cols=19 Identities=37% Similarity=1.015 Sum_probs=16.6
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
....|+.||+|..+||+..
T Consensus 299 G~~~CvgCGrC~~~CP~~i 317 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYI 317 (334)
T ss_pred CccccCCcCchhhhCCCCC
Confidence 4578999999999999973
No 245
>COG1146 Ferredoxin [Energy production and conversion]
Probab=77.96 E-value=0.79 Score=34.66 Aligned_cols=20 Identities=35% Similarity=0.688 Sum_probs=17.2
Q ss_pred ccchhcccCCcccccCCCce
Q psy5769 214 DGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~ 233 (365)
.....|+.||.|..+||+..
T Consensus 38 ~~~e~C~~C~~C~~~CP~~a 57 (68)
T COG1146 38 ARPEECIDCGLCELACPVGA 57 (68)
T ss_pred eccccCccchhhhhhCCcce
Confidence 34578999999999999984
No 246
>CHL00065 psaC photosystem I subunit VII
Probab=77.77 E-value=0.58 Score=36.58 Aligned_cols=26 Identities=31% Similarity=0.868 Sum_probs=19.2
Q ss_pred hhcccCCcccccCCCceeCCcccCCH
Q psy5769 217 YECILCACCSTSCPSYWWNGEKYLGP 242 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~~~~~lgP 242 (365)
..|+.||.|..+||.....-..|.|+
T Consensus 46 ~~C~~C~~C~~~CP~~Ai~~~~~~~~ 71 (81)
T CHL00065 46 EDCVGCKRCESACPTDFLSVRVYLGH 71 (81)
T ss_pred CcCCChhhhhhhcCccccEEEEEecc
Confidence 57999999999999876433344443
No 247
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=77.42 E-value=0.86 Score=45.52 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=30.2
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcCC
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~g 289 (365)
...|..||.|.+.||.+.... .-+|. + ...-.|..|+.|..+||.-
T Consensus 4 ~~~c~~Cg~C~a~cp~~i~~~--~~~~~--------------------~------~~~c~~~~~~~~~~~cp~~ 49 (332)
T COG1035 4 AGLCTGCGTCAAVCPYAITER--DEAPL--------------------L------IEECMDNGHGTCLKVCPEV 49 (332)
T ss_pred CcccccchhhHhhCCceEEEe--cccch--------------------h------hhhhhcccchHHhhhCccc
Confidence 457999999999999933211 11221 0 0234467788999999943
No 248
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=77.18 E-value=1.6 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=18.9
Q ss_pred HhcccchhcccCC--cccccCCCce
Q psy5769 211 KKLDGLYECILCA--CCSTSCPSYW 233 (365)
Q Consensus 211 ~~l~~~~~CI~CG--~C~s~CP~~~ 233 (365)
+...+..+|+.|+ .|..+||+..
T Consensus 34 ~~~~~~~~c~~c~~~~C~~~CP~~~ 58 (467)
T TIGR01318 34 QAQYQADRCLYCGNPYCEWKCPVHN 58 (467)
T ss_pred HHHHHHHhcccCCCccccccCCCCC
Confidence 3445678999999 6999999984
No 249
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=77.01 E-value=0.83 Score=52.53 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=36.5
Q ss_pred ccchhcccCCccc--ccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccc-cCcCCC
Q psy5769 214 DGLYECILCACCS--TSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTR-TCPKGL 290 (365)
Q Consensus 214 ~~~~~CI~CG~C~--s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~-vCP~gI 290 (365)
.+...|..||-|. +.||.......+ +|- . ..+ .-..|..|+.|.+ +||+-+
T Consensus 640 In~~vCegCgdC~~~s~C~ai~p~~t~-~gr-------------------K--~~I----dqs~Cn~d~sC~~G~CPsFv 693 (1165)
T PRK09193 640 INEAVCEGCGDCSVKSNCLSVEPVETE-FGR-------------------K--RRI----DQSSCNKDFSCLKGFCPSFV 693 (1165)
T ss_pred EcccccCCchhhhhccCCcceeecccc-CCc-------------------c--EEE----CHhHCCCccccccCCCCCce
Confidence 4567899999998 589998632111 121 0 001 3467999999999 999887
Q ss_pred ChH
Q psy5769 291 NPG 293 (365)
Q Consensus 291 ~~~ 293 (365)
-+.
T Consensus 694 tv~ 696 (1165)
T PRK09193 694 TVE 696 (1165)
T ss_pred eec
Confidence 543
No 250
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=76.33 E-value=1.4 Score=47.00 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=25.9
Q ss_pred ccccccccccccccCcCCCChHHHHHHHH
Q psy5769 272 SVYRCHTIMNCTRTCPKGLNPGRAIAEIK 300 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR 300 (365)
.+..|+.||.|..+||.++++.+++....
T Consensus 398 ~a~kc~~cG~C~~~CP~~l~i~eam~~A~ 426 (772)
T COG1152 398 YARKCTYCGNCMRACPNELDIPEAMEYAA 426 (772)
T ss_pred HHHhcccccchhccCCcccchHHHHHHhh
Confidence 46889999999999999999999987654
No 251
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=76.27 E-value=0.9 Score=52.28 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=35.7
Q ss_pred ccchhcccCCccc--ccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccc-cCcCCC
Q psy5769 214 DGLYECILCACCS--TSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTR-TCPKGL 290 (365)
Q Consensus 214 ~~~~~CI~CG~C~--s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~-vCP~gI 290 (365)
.+...|..||-|. +.||.......+ +|- + ..+ .-..|..|+.|.+ +||+-+
T Consensus 654 In~~vCeGCgdC~~~snC~ai~p~et~-~gr-------------------K--~~I----dqs~Cn~d~sC~~G~CPsFv 707 (1186)
T PRK13029 654 INELVCEGCGDCSVQSNCLAVQPVETE-FGR-------------------K--RKI----NQSSCNKDFSCVKGFCPSFV 707 (1186)
T ss_pred EcccccCCchhhhhccCCceeeecccc-CCc-------------------c--EEE----CHhHCCCccccccCCCCCce
Confidence 4557899999998 589998632211 121 0 011 3467999999999 999865
Q ss_pred Ch
Q psy5769 291 NP 292 (365)
Q Consensus 291 ~~ 292 (365)
-+
T Consensus 708 tv 709 (1186)
T PRK13029 708 TV 709 (1186)
T ss_pred ee
Confidence 54
No 252
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=75.79 E-value=1.2 Score=48.64 Aligned_cols=29 Identities=24% Similarity=0.388 Sum_probs=23.6
Q ss_pred ccccccccccccccCcCCCChHHHHHHHH
Q psy5769 272 SVYRCHTIMNCTRTCPKGLNPGRAIAEIK 300 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~gI~~~~~I~~lR 300 (365)
....|..||.|..+||.++.+..+...++
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~ 396 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAK 396 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhh
Confidence 45789999999999999998876654433
No 253
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=75.71 E-value=0.76 Score=35.83 Aligned_cols=26 Identities=31% Similarity=0.885 Sum_probs=19.6
Q ss_pred hhcccCCcccccCCCceeCCcccCCH
Q psy5769 217 YECILCACCSTSCPSYWWNGEKYLGP 242 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~~~~~lgP 242 (365)
..|+.||.|..+||.....-..|.++
T Consensus 45 ~~C~~Cg~C~~~CP~~ai~~~~~~~~ 70 (80)
T TIGR03048 45 EDCVGCKRCESACPTDFLSVRVYLGA 70 (80)
T ss_pred CcCcChhHHHHhcCcccCEEEEecCc
Confidence 67999999999999875433345554
No 254
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=75.37 E-value=1.5 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=18.7
Q ss_pred HhcccchhcccCCc--ccccCCCce
Q psy5769 211 KKLDGLYECILCAC--CSTSCPSYW 233 (365)
Q Consensus 211 ~~l~~~~~CI~CG~--C~s~CP~~~ 233 (365)
+...+..+|+.|+. |..+||...
T Consensus 38 ~~~~~a~rc~~c~~~~C~~~CP~~~ 62 (471)
T PRK12810 38 QAKIQAARCMDCGIPFCHWGCPVHN 62 (471)
T ss_pred HHHHHHHhccCCCCCcccccCCCCC
Confidence 44456789999977 999999985
No 255
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=74.46 E-value=0.92 Score=35.94 Aligned_cols=19 Identities=32% Similarity=0.808 Sum_probs=16.2
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
+...|+.||.|..+||...
T Consensus 68 ~~~~C~~Cg~C~~~CP~~A 86 (91)
T TIGR02936 68 NPGNCIGCGACARVCPKKC 86 (91)
T ss_pred CCccCcChhhhhhhCCHhH
Confidence 3468999999999999864
No 256
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=74.32 E-value=1.2 Score=40.68 Aligned_cols=20 Identities=30% Similarity=0.831 Sum_probs=16.8
Q ss_pred cchhcccCCcccccCCCcee
Q psy5769 215 GLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~ 234 (365)
+...|+.||.|..+||....
T Consensus 100 d~~~Ci~Cg~Cv~aCP~~AI 119 (183)
T TIGR00403 100 DFGVCIFCGNCVEYCPTNCL 119 (183)
T ss_pred CcccccCcCchhhhcCCCCe
Confidence 45679999999999998643
No 257
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=74.24 E-value=1 Score=35.51 Aligned_cols=17 Identities=29% Similarity=0.798 Sum_probs=15.2
Q ss_pred cccccccccccccCcCC
Q psy5769 273 VYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~g 289 (365)
...|+.||.|..+||.+
T Consensus 28 ~~~Ci~Cg~C~~~CP~~ 44 (99)
T COG1145 28 AEKCIGCGLCVKVCPTG 44 (99)
T ss_pred ccccCCCCCchhhCCHH
Confidence 45699999999999987
No 258
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=73.30 E-value=1.5 Score=36.11 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=17.1
Q ss_pred ccchhcccCCcccccCCCce
Q psy5769 214 DGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~ 233 (365)
.+...||.||.|.-+||...
T Consensus 58 vd~e~CigCg~C~~~C~~~~ 77 (95)
T PRK15449 58 FDYAGCLECGTCRILGLGSA 77 (95)
T ss_pred EcCCCCCcchhhhhhcCCCC
Confidence 34578999999999998875
No 259
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=72.88 E-value=1.2 Score=36.58 Aligned_cols=18 Identities=33% Similarity=0.835 Sum_probs=15.6
Q ss_pred cccccccccccccCcCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI 290 (365)
...|+.||.|..+||.++
T Consensus 15 ~~~Ci~C~~Cv~aCP~~a 32 (103)
T PRK09626 15 ESRCKACDICVSVCPAGV 32 (103)
T ss_pred cccccCCcchhhhcChhh
Confidence 458999999999999764
No 260
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=72.58 E-value=1.8 Score=36.39 Aligned_cols=80 Identities=15% Similarity=0.420 Sum_probs=34.1
Q ss_pred cccchhcccC--CcccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCcc-cc----cccccccccc
Q psy5769 213 LDGLYECILC--ACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSV-YR----CHTIMNCTRT 285 (365)
Q Consensus 213 l~~~~~CI~C--G~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l-~~----Ct~Cg~C~~v 285 (365)
..+..+|+.| .-|+.+||+.. .+..++.+.+. ++- .+.++.+...+-+ .. |..=..|..+
T Consensus 18 ~~ea~rC~~c~~~pC~~aCP~~~-------dip~~i~~i~~---g~~---~~A~~~i~~~np~p~vcGrvCp~p~~Ce~~ 84 (111)
T PF14691_consen 18 IEEASRCLQCEDPPCQAACPAHI-------DIPEYIRLIRE---GNF---KEAYELIREDNPFPAVCGRVCPHPKQCESA 84 (111)
T ss_dssp HHHHHHS---TT-HHHHTSTT----------HHHHHHHHHC---T-H---HHHHHHHHHH-TTHHHHHHH--GGGSGGGG
T ss_pred HHHHhhccCCCCCCcccCCCCCC-------cHHHHHHHHHC---CCH---HHHHHHHHHhCCCcccccCCCCCcchHHHH
Confidence 4467899999 69999999974 33444444432 111 1222222211111 11 2222239999
Q ss_pred CcCCCChHHHHHHHHHHHhc
Q psy5769 286 CPKGLNPGRAIAEIKKLLSG 305 (365)
Q Consensus 286 CP~gI~~~~~I~~lR~~l~~ 305 (365)
|-.+..-+-.|..|.+.+..
T Consensus 85 C~r~~~~pV~I~~l~r~~~d 104 (111)
T PF14691_consen 85 CRRGKGEPVAIRALERFIAD 104 (111)
T ss_dssp -GGGST-S--HHHHHHHHHH
T ss_pred ccCCCCCCCcHHHHHHHHHH
Confidence 98763333456666665543
No 261
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=72.17 E-value=1.3 Score=37.28 Aligned_cols=18 Identities=33% Similarity=0.835 Sum_probs=15.8
Q ss_pred cccccccccccccCcCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI 290 (365)
...|+.||.|..+||.+.
T Consensus 41 ~~~Ci~C~~C~~~CP~~a 58 (120)
T PRK08348 41 VDKCVGCRMCVTVCPAGV 58 (120)
T ss_pred cccCcCcccHHHHCCccc
Confidence 468999999999999764
No 262
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=71.89 E-value=2.2 Score=44.12 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=21.7
Q ss_pred CccccccccccccccCcCCCChHHHH
Q psy5769 271 FSVYRCHTIMNCTRTCPKGLNPGRAI 296 (365)
Q Consensus 271 ~~l~~Ct~Cg~C~~vCP~gI~~~~~I 296 (365)
.....|..||.|.++||.++.+..++
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l~p~~l~ 385 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNLLPQQLN 385 (435)
T ss_pred ccCCcCcCccchhhhCccchhhHHHH
Confidence 45689999999999999998766544
No 263
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=71.79 E-value=2 Score=36.19 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=20.0
Q ss_pred cccccccc--ccccccCcCCCChHHHHHHHHH
Q psy5769 272 SVYRCHTI--MNCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 272 ~l~~Ct~C--g~C~~vCP~gI~~~~~I~~lR~ 301 (365)
...+|+.| --|+..||.++++...|..++.
T Consensus 20 ea~rC~~c~~~pC~~aCP~~~dip~~i~~i~~ 51 (111)
T PF14691_consen 20 EASRCLQCEDPPCQAACPAHIDIPEYIRLIRE 51 (111)
T ss_dssp HHHHS---TT-HHHHTSTT---HHHHHHHHHC
T ss_pred HHhhccCCCCCCcccCCCCCCcHHHHHHHHHC
Confidence 35789999 6899999999999999998874
No 264
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=70.68 E-value=1.2 Score=32.95 Aligned_cols=18 Identities=28% Similarity=0.695 Sum_probs=11.8
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...||.||.|...+|..-
T Consensus 3 ~~~Ci~Cg~C~~~aP~vF 20 (58)
T PF13370_consen 3 RDKCIGCGLCVEIAPDVF 20 (58)
T ss_dssp TTT--S-SHHHHH-TTTE
T ss_pred hhhCcCCChHHHhCcHhe
Confidence 368999999999999864
No 265
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=69.98 E-value=1.7 Score=38.99 Aligned_cols=20 Identities=30% Similarity=0.831 Sum_probs=16.5
Q ss_pred cchhcccCCcccccCCCcee
Q psy5769 215 GLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~ 234 (365)
+...|+.||.|..+||....
T Consensus 97 d~~~C~~Cg~C~~~CP~~AI 116 (167)
T CHL00014 97 DFGVCIFCGNCVEYCPTNCL 116 (167)
T ss_pred CCCcCcCccchHhhcCcCce
Confidence 34679999999999998643
No 266
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=69.75 E-value=1.9 Score=38.38 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=15.8
Q ss_pred ccccccccccccccCcCC
Q psy5769 272 SVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~g 289 (365)
....|+.|+.|..+||.+
T Consensus 56 ~~~~Ci~C~~C~~~CP~~ 73 (164)
T PRK05888 56 GEERCIACKLCAAICPAD 73 (164)
T ss_pred CCccCCcccChHHHcCcc
Confidence 456899999999999976
No 267
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=69.73 E-value=2.8 Score=42.40 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=22.1
Q ss_pred cccccccccccCcCCCChHHHHHHHHH
Q psy5769 275 RCHTIMNCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 275 ~Ct~Cg~C~~vCP~gI~~~~~I~~lR~ 301 (365)
.|+.|+.|.. ||.||+++..+..+..
T Consensus 294 ~Ct~C~yC~P-CP~gInIP~~f~lyN~ 319 (391)
T COG1453 294 PCTGCRYCLP-CPSGINIPEIFRLYNL 319 (391)
T ss_pred CCccccccCc-CCCCCChHHHHHHHHH
Confidence 3999999999 9999999988765443
No 268
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=69.23 E-value=3.7 Score=41.51 Aligned_cols=18 Identities=44% Similarity=1.023 Sum_probs=15.9
Q ss_pred cchhcccCCcccccCCCc
Q psy5769 215 GLYECILCACCSTSCPSY 232 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~ 232 (365)
.+..|+.||+|..+||..
T Consensus 71 ~~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 71 HLDRCLTCRNCETTCPSG 88 (407)
T ss_pred ccccCccccchhhhCCCC
Confidence 357899999999999985
No 269
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=68.46 E-value=2 Score=33.24 Aligned_cols=18 Identities=28% Similarity=0.715 Sum_probs=15.7
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
-..||.||.|..+||-.-
T Consensus 7 rd~Cigcg~C~~~aPdvF 24 (68)
T COG1141 7 RDTCIGCGACLAVAPDVF 24 (68)
T ss_pred hhhccccchhhhcCCcce
Confidence 368999999999999764
No 270
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=68.36 E-value=1.8 Score=32.41 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=15.4
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|+.||.|...||.+-
T Consensus 5 ~~~C~gcg~C~~~aP~vF 22 (65)
T PF13459_consen 5 RDRCIGCGLCVELAPEVF 22 (65)
T ss_pred cccCcCccHHHhhCCccE
Confidence 468999999999999643
No 271
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=68.32 E-value=2.2 Score=35.72 Aligned_cols=20 Identities=30% Similarity=0.864 Sum_probs=16.8
Q ss_pred cchhcccCCcccccCCCcee
Q psy5769 215 GLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~ 234 (365)
....|+.||.|..+||....
T Consensus 80 ~~~~C~~Cg~Cv~~CP~~al 99 (122)
T TIGR01971 80 NFGRCIFCGLCEEACPTDAI 99 (122)
T ss_pred CcccCCCCCchhhhCCCccc
Confidence 45679999999999998653
No 272
>PRK12831 putative oxidoreductase; Provisional
Probab=68.31 E-value=2.5 Score=43.79 Aligned_cols=24 Identities=21% Similarity=0.645 Sum_probs=19.6
Q ss_pred HHhcccchhcccCC--cccccCCCce
Q psy5769 210 RKKLDGLYECILCA--CCSTSCPSYW 233 (365)
Q Consensus 210 ~~~l~~~~~CI~CG--~C~s~CP~~~ 233 (365)
.+.+.+..+|+.|+ -|..+||+..
T Consensus 33 ~~~~~ea~rc~~c~~~~C~~~CP~~~ 58 (464)
T PRK12831 33 EEAVKEASRCLQCKKPKCVKGCPVSI 58 (464)
T ss_pred HHHHHHHHhhcCCCCCchhhhCCCCC
Confidence 34456789999999 5999999984
No 273
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=68.31 E-value=3.1 Score=45.74 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=23.1
Q ss_pred ccccccccccccccCcCCCChHHHHHHH
Q psy5769 272 SVYRCHTIMNCTRTCPKGLNPGRAIAEI 299 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~gI~~~~~I~~l 299 (365)
....|+.||.|..+||.++...+.+..+
T Consensus 363 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~~ 390 (731)
T cd01916 363 LAAKCTDCGWCTRACPNSLRIKEAMEAA 390 (731)
T ss_pred hhhcCCCCCcccccCCCCCcHHHHHHHH
Confidence 5678999999999999998876666544
No 274
>PRK06273 ferredoxin; Provisional
Probab=68.00 E-value=2 Score=38.62 Aligned_cols=20 Identities=25% Similarity=0.840 Sum_probs=17.1
Q ss_pred cchhcccCCcccccCCCcee
Q psy5769 215 GLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~ 234 (365)
+...|+.||.|..+||....
T Consensus 89 d~~kCi~Cg~C~~aCP~~AI 108 (165)
T PRK06273 89 DYEKCVYCLYCHDFCPVFAL 108 (165)
T ss_pred ccccCcCCCCcchhCCHhhe
Confidence 34689999999999999854
No 275
>KOG2282|consensus
Probab=67.71 E-value=3.4 Score=43.53 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=41.2
Q ss_pred CHHHHHHHhhhccCCCcccccCC-CCCCcCccEEEeCC--cccccccccccccc
Q psy5769 1 MVLDALIKIKNEMDPTLTFRRSC-REGICGSCAMNIGG--VNTLACISKIDAND 51 (365)
Q Consensus 1 ~vl~al~~i~~~~d~~l~~~~~C-~~~~CgsC~v~inG--~~~laC~t~v~~~~ 51 (365)
|||+|-..++ -..|.+||..-- -+|-|..|.|+|.. +|+-||.-++-.+|
T Consensus 49 tvlqac~~~g-v~iprfcyh~rlsvagncrmclvevekspkpva~campvm~g~ 101 (708)
T KOG2282|consen 49 TVLQACAKVG-VDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMKGW 101 (708)
T ss_pred HHHHHHHHhC-CCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccCCc
Confidence 7899999998 468889888653 55778889999997 58899999987776
No 276
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=67.11 E-value=2.5 Score=42.46 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.3
Q ss_pred CccccccccccccccCcCCC
Q psy5769 271 FSVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 271 ~~l~~Ct~Cg~C~~vCP~gI 290 (365)
..+..|+.||.|..+||+.-
T Consensus 4 ~~~~~Ci~Cg~C~~~CP~~~ 23 (396)
T PRK11168 4 TSFDSCIKCTVCTTACPVAR 23 (396)
T ss_pred cchhhcCCCCCCCccCCCcc
Confidence 45778999999999999864
No 277
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=67.07 E-value=1.7 Score=37.53 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=15.9
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|+.||.|..+||...
T Consensus 88 ~~~C~~Cg~Cv~vCP~~a 105 (133)
T PRK09625 88 YSHCKGCGVCVEVCPTNP 105 (133)
T ss_pred cCcCcChhHHHHHCCcCc
Confidence 467999999999999874
No 278
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=66.64 E-value=2.5 Score=43.51 Aligned_cols=22 Identities=36% Similarity=0.807 Sum_probs=18.6
Q ss_pred hcccchhcccCCcccccCCCce
Q psy5769 212 KLDGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 212 ~l~~~~~CI~CG~C~s~CP~~~ 233 (365)
..+....|.+||.|..+||+-.
T Consensus 353 ~~~~~~~c~lcg~C~evCPv~I 374 (459)
T COG1139 353 AGDLPYACSLCGACTEVCPVKI 374 (459)
T ss_pred ccccchhhccccCCCCcCCCCC
Confidence 3456789999999999999974
No 279
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=66.64 E-value=3.3 Score=45.79 Aligned_cols=27 Identities=37% Similarity=0.733 Sum_probs=22.3
Q ss_pred ccccccccccccccCcCCCChHHHHHH
Q psy5769 272 SVYRCHTIMNCTRTCPKGLNPGRAIAE 298 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~gI~~~~~I~~ 298 (365)
....|+.||.|..+||.++.+.+.+..
T Consensus 397 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~ 423 (784)
T TIGR00314 397 LANKCTQCGNCVRTCPNSLRVDEAMAH 423 (784)
T ss_pred hcccCCCcccchhhCCCCcchHHHHHH
Confidence 457999999999999999887665543
No 280
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=64.38 E-value=2.3 Score=34.58 Aligned_cols=18 Identities=28% Similarity=0.715 Sum_probs=16.0
Q ss_pred cchhcccCCcccccCCCc
Q psy5769 215 GLYECILCACCSTSCPSY 232 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~ 232 (365)
+...|-.||.|.++||+-
T Consensus 64 dYdyCKGCGICa~vCP~k 81 (91)
T COG1144 64 DYDYCKGCGICANVCPVK 81 (91)
T ss_pred EcccccCceechhhCChh
Confidence 457899999999999984
No 281
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=63.76 E-value=2.8 Score=34.78 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=16.2
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
+...|+.||.|..+||...
T Consensus 79 d~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09624 79 DYDYCKGCGICANECPTKA 97 (105)
T ss_pred CchhCCCcCchhhhcCcCc
Confidence 3468999999999999864
No 282
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=63.75 E-value=4.4 Score=41.97 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=21.1
Q ss_pred chhcccCCcccccCCCceeCCcccCCHHHHHHHHHH
Q psy5769 216 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRW 251 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~~~~~lgP~~l~~~~r~ 251 (365)
...|..||.|..+||+.. .+..++..+|.
T Consensus 342 ~~~C~~Cg~C~~vCP~gI-------~~~~li~~~R~ 370 (432)
T TIGR00273 342 PYLSSLCGACREVCPVKI-------PLPELIREHRS 370 (432)
T ss_pred CccchhhhhhhccCCCCC-------cHHHHHHHHHH
Confidence 478999999999999953 34445555543
No 283
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=63.45 E-value=4.3 Score=42.10 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=26.4
Q ss_pred ccccccccc--cccccCcCCCChHHHHHHHHH
Q psy5769 272 SVYRCHTIM--NCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 272 ~l~~Ct~Cg--~C~~vCP~gI~~~~~I~~lR~ 301 (365)
...+|..|+ -|...||.++++...|..+++
T Consensus 38 ~~~~c~~c~~~~C~~~CP~~~~~~~~~~~~~~ 69 (467)
T TIGR01318 38 QADRCLYCGNPYCEWKCPVHNAIPQWLQLVQE 69 (467)
T ss_pred HHHhcccCCCccccccCCCCCcHHHHHHHHHC
Confidence 467899998 699999999999999988764
No 284
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=62.70 E-value=2.8 Score=42.07 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=18.1
Q ss_pred cccchhcccCCcccccCCCcee
Q psy5769 213 LDGLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 213 l~~~~~CI~CG~C~s~CP~~~~ 234 (365)
..+...|+.||.|..+||....
T Consensus 210 ~id~~~Ci~Cg~Ci~~CP~~a~ 231 (341)
T TIGR02066 210 EVDVEKCIYCGNCYTMCPAMPI 231 (341)
T ss_pred eeccccCCcCCchHHhCchhhc
Confidence 3456899999999999998643
No 285
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=62.70 E-value=3.5 Score=41.07 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=15.6
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|+.||.|..+||...
T Consensus 52 ~~~C~~Cg~C~~vCP~~~ 69 (341)
T PRK09326 52 PNVCEGCLTCSRICPVVD 69 (341)
T ss_pred cCcCcCcCchhhhCCCCc
Confidence 467999999999999854
No 286
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=62.62 E-value=2.2 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=19.1
Q ss_pred HhcccchhcccCCc--ccc--cCCCce
Q psy5769 211 KKLDGLYECILCAC--CST--SCPSYW 233 (365)
Q Consensus 211 ~~l~~~~~CI~CG~--C~s--~CP~~~ 233 (365)
....+.++|+.|+. |.. +||+..
T Consensus 36 ~~~~~~~rc~~c~~~~C~~~~~CP~~~ 62 (485)
T TIGR01317 36 SAKYQAARCMDCGTPFCHNDSGCPLNN 62 (485)
T ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCC
Confidence 34567799999976 999 999985
No 287
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=62.51 E-value=4.8 Score=45.83 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=36.4
Q ss_pred CHHHHHHHhhhcc-CCCcc---ccc-CCCCCCcCccEEEeCCc-----cccccccccccccc
Q psy5769 1 MVLDALIKIKNEM-DPTLT---FRR-SCREGICGSCAMNIGGV-----NTLACISKIDANDK 52 (365)
Q Consensus 1 ~vl~al~~i~~~~-d~~l~---~~~-~C~~~~CgsC~v~inG~-----~~laC~t~v~~~~~ 52 (365)
||..||...+... .-|.- .|. -|.++.|-.|.|.|||. .++||.|.+.++|+
T Consensus 29 t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~~~~~~ac~~~~~~gm~ 90 (985)
T TIGR01372 29 TLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQREPNTRATTQELYDGLV 90 (985)
T ss_pred HHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCCCCCccceeEEcccCCE
Confidence 5777887765321 22221 122 38888899999999973 46899999999983
No 288
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=60.87 E-value=3.2 Score=40.06 Aligned_cols=19 Identities=32% Similarity=0.732 Sum_probs=16.6
Q ss_pred cccccccccccccCcCCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI~ 291 (365)
...|+.||.|..+||.+.-
T Consensus 47 ~~~C~~C~~C~~~Cp~~a~ 65 (295)
T TIGR02494 47 ENRCLGCGKCVEVCPAGTA 65 (295)
T ss_pred cccCCCCchhhhhCccccc
Confidence 4689999999999998863
No 289
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=60.50 E-value=2.8 Score=32.14 Aligned_cols=18 Identities=33% Similarity=0.715 Sum_probs=15.5
Q ss_pred cccccccccccccCcCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI 290 (365)
...|+.|+.|..+||.+.
T Consensus 24 ~~~C~~C~~C~~~Cp~~a 41 (78)
T TIGR02179 24 KEKCIKCKNCWLYCPEGA 41 (78)
T ss_pred CCcCcChhHHHhhcCccc
Confidence 467999999999999763
No 290
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=60.33 E-value=5.3 Score=44.26 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=22.8
Q ss_pred ccccccccccccccCcCCCChHHHHHHH
Q psy5769 272 SVYRCHTIMNCTRTCPKGLNPGRAIAEI 299 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~gI~~~~~I~~l 299 (365)
....|+.||.|..+||.+..+...+...
T Consensus 402 eadrCI~CG~Cv~aCP~~l~i~~~I~~a 429 (781)
T PRK00941 402 LAKKCTECGWCVRVCPNELPIPEAMEAA 429 (781)
T ss_pred hhhhCcCCCCccccCCCCcchhHHHHHH
Confidence 4578999999999999998876665544
No 291
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=58.91 E-value=4 Score=41.54 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=15.0
Q ss_pred cccccccccccCcCCCC
Q psy5769 275 RCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 275 ~Ct~Cg~C~~vCP~gI~ 291 (365)
.|.+|+.|.++|+....
T Consensus 246 ~CI~C~~CidaCd~~~~ 262 (386)
T COG0348 246 ECIGCGRCIDACDDDML 262 (386)
T ss_pred ccccHhhHhhhCCHHhh
Confidence 79999999999996655
No 292
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=58.79 E-value=2.5 Score=43.40 Aligned_cols=25 Identities=24% Similarity=0.695 Sum_probs=20.0
Q ss_pred HHHhcccchhcccC--CcccccCCCce
Q psy5769 209 DRKKLDGLYECILC--ACCSTSCPSYW 233 (365)
Q Consensus 209 ~~~~l~~~~~CI~C--G~C~s~CP~~~ 233 (365)
+.+.+.+..+|+.| ..|+.+||...
T Consensus 32 ~~~~~~e~~rc~~c~~~~c~~~cp~~~ 58 (457)
T PRK11749 32 PEEAIEEASRCLQCKDAPCVKACPVSI 58 (457)
T ss_pred HHHHHHHHHHhhCCCCCcccccCCCcC
Confidence 34455668899999 78999999974
No 293
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=58.21 E-value=2.8 Score=45.02 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=20.0
Q ss_pred HHhcccchhcccCCcccccCCCcee
Q psy5769 210 RKKLDGLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 210 ~~~l~~~~~CI~CG~C~s~CP~~~~ 234 (365)
.+...+...|+.||.|..+||.+..
T Consensus 601 ~k~~id~~~C~GCg~C~~iCP~~a~ 625 (640)
T COG4231 601 KKARIDPSSCNGCGSCVEVCPSFAI 625 (640)
T ss_pred CceeecccccccchhhhhcCchhhe
Confidence 4444566779999999999999864
No 294
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=57.51 E-value=4.7 Score=40.69 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.9
Q ss_pred ccccccccccccccCcCC
Q psy5769 272 SVYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~g 289 (365)
.+..|..||.|..+||+-
T Consensus 3 ~~~~Ci~Cg~C~~~Cp~~ 20 (397)
T TIGR03379 3 SFESCIKCTVCTVYCPVA 20 (397)
T ss_pred chhhCCCCCCCcccCcCc
Confidence 567899999999999964
No 295
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=57.29 E-value=3.6 Score=40.45 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=17.0
Q ss_pred ccchhcccCCcccccCCCce
Q psy5769 214 DGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~ 233 (365)
.+...|+.||.|..+||+..
T Consensus 198 id~~~C~~Cg~Cv~~CP~~A 217 (314)
T TIGR02912 198 RDHSKCIGCGECVLKCPTGA 217 (314)
T ss_pred eCCCcCcCcchhhhhCCHhh
Confidence 35578999999999999864
No 296
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=56.56 E-value=4.4 Score=33.17 Aligned_cols=19 Identities=32% Similarity=0.878 Sum_probs=16.1
Q ss_pred chhcccCCcccccCCCcee
Q psy5769 216 LYECILCACCSTSCPSYWW 234 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~ 234 (365)
...|+.||.|..+||....
T Consensus 65 ~~~C~~Cg~C~~~CP~~Ai 83 (101)
T TIGR00402 65 NAECDFCGKCAEACPTNAF 83 (101)
T ss_pred CccCcCccChhhHCCcccc
Confidence 3579999999999998753
No 297
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=56.20 E-value=4.3 Score=40.35 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=25.0
Q ss_pred ccccccccccccccCcCC-----CChHHHHHHHHHHHh
Q psy5769 272 SVYRCHTIMNCTRTCPKG-----LNPGRAIAEIKKLLS 304 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~g-----I~~~~~I~~lR~~l~ 304 (365)
.++.|+.||.|..+||.- ..+...+..+|..+.
T Consensus 7 ~~~~Cv~Cg~C~~~CP~~~~~~~~sPrgr~~~~r~~~~ 44 (388)
T COG0247 7 SLDKCVHCGFCTNVCPSYRATEALSPRGRIVLVREVLR 44 (388)
T ss_pred HHHhcCCCCcccCcCCCccccCCCCCchHHHHHHHHHh
Confidence 578999999999999954 345666666666554
No 298
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=55.75 E-value=13 Score=38.20 Aligned_cols=80 Identities=16% Similarity=0.359 Sum_probs=43.9
Q ss_pred hcccchhcccCC----cccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcC-----CCccccccccccc
Q psy5769 212 KLDGLYECILCA----CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD-----PFSVYRCHTIMNC 282 (365)
Q Consensus 212 ~l~~~~~CI~CG----~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~-----~~~l~~Ct~Cg~C 282 (365)
.+.+..+|+.|+ -|..+||+... -| .++++.+ .++- .+.++.+.. .---.-|.....|
T Consensus 21 ~~~ea~rc~~c~~~~~~C~~~CP~~~~------i~-~~~~~~~---~g~~---~~A~~~~~~~~p~p~~~grvC~~~~~C 87 (449)
T TIGR01316 21 ALVEAQRCLNCKDATKPCIKGCPVHVP------IP-EFIAKIQ---EGDF---KGAVDIIKTTSLLPAICGRVCPQERQC 87 (449)
T ss_pred HHHHHhhCcCccCCCCChhhhCCCCCC------HH-HHHHHHH---CCCH---HHHHHHHHHhCChhHHhccCCCCccch
Confidence 445568999998 79999999841 22 2333222 1111 111111111 0122457777789
Q ss_pred cccCcCCC-----ChHHHHHHHHHHHh
Q psy5769 283 TRTCPKGL-----NPGRAIAEIKKLLS 304 (365)
Q Consensus 283 ~~vCP~gI-----~~~~~I~~lR~~l~ 304 (365)
...|..+. +-+-.|..|.+.+.
T Consensus 88 e~~C~~~~~~~~~~~~v~i~~l~~~~~ 114 (449)
T TIGR01316 88 EGQCTVGKMFKDVGKPVSIGALERFVA 114 (449)
T ss_pred HhhCcCCCcCCCCCCCccHHHHHHHHH
Confidence 99998653 44455666666553
No 299
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=55.38 E-value=2.3 Score=35.10 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=31.5
Q ss_pred chhcccCC--cccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcCCCccccccccccccccCcC
Q psy5769 216 LYECILCA--CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPK 288 (365)
Q Consensus 216 ~~~CI~CG--~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~~~~l~~Ct~Cg~C~~vCP~ 288 (365)
...|..|- .|+.+||+.-+. +.+ + ..+. .....|.-||.|--.||.
T Consensus 32 ~~~~~~~~~~~l~~aCPA~~Y~----~~~-----------~-------g~l~-----~~yegClECGTCRvlc~~ 79 (99)
T COG2440 32 PDDCQECEDKPLIKACPAGCYK----LID-----------D-------GKLR-----FDYEGCLECGTCRVLCPH 79 (99)
T ss_pred chhhhhccchhhhhcCCHHHee----ECC-----------C-------CcEE-----EeecCeeeccceeEecCC
Confidence 46788888 999999987532 110 0 0111 135679999999999996
No 300
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=54.98 E-value=4.7 Score=33.31 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=16.2
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
+...|+.||.|..+||...
T Consensus 79 d~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09623 79 DYDYCKGCGICANECPTKA 97 (105)
T ss_pred CchhCcCcchhhhhcCcCc
Confidence 4477999999999999864
No 301
>PRK06991 ferredoxin; Provisional
Probab=54.82 E-value=4.1 Score=39.58 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=15.8
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|+.||.|..+||+..
T Consensus 114 ~~~CigCg~Cv~vCP~~A 131 (270)
T PRK06991 114 ADLCTGCDLCVPPCPVDC 131 (270)
T ss_pred HhhCCCchHHHhhCCcCC
Confidence 468999999999999864
No 302
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=54.02 E-value=3.6 Score=44.62 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=17.5
Q ss_pred ccchhcccCCcccccCCCce
Q psy5769 214 DGLYECILCACCSTSCPSYW 233 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~ 233 (365)
.+..+||+||+|..+|....
T Consensus 613 ~D~~kCI~CgrCv~~C~ev~ 632 (652)
T PRK12814 613 FEREKCVDCGICVRTLEEYG 632 (652)
T ss_pred eccccccCchHHHHHHHHhc
Confidence 57889999999999998765
No 303
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=53.43 E-value=14 Score=38.63 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=45.2
Q ss_pred HhcccchhcccCC-cccccCCCceeCCcccCCHHHHHHHHHHHhccCChhHHHHHhhhcC--CCccccccccccccccCc
Q psy5769 211 KKLDGLYECILCA-CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD--PFSVYRCHTIMNCTRTCP 287 (365)
Q Consensus 211 ~~l~~~~~CI~CG-~C~s~CP~~~~~~~~~lgP~~l~~~~r~~~d~rd~~~~erl~~~~~--~~~l~~Ct~Cg~C~~vCP 287 (365)
+.+....+|+.|| .|...||++... ..|..++ ..+++...-+.+..-.. ...---|..=..|...|.
T Consensus 17 ~a~~~a~rCl~C~~~C~~~cp~~~~I----P~~~~lv------~~g~~~~a~~~i~~tn~~p~~~gRvcp~~~~ceg~cv 86 (457)
T COG0493 17 AAIYEAARCLDCGDPCITGCPVHNDI----PEPIGLV------REGVDHEAIKLIHKTNNLPAITGRVCPLGNLCEGACV 86 (457)
T ss_pred HHHHHHHHHHcCCCccccCCcCCCcC----CCHHHHH------hcCCcHHHHHHHHHhCCCccccCccCCCCCceeeeee
Confidence 4456678999999 699999999632 2332222 22222222222222110 011123555566888888
Q ss_pred CCC-ChHHHHHHHHHHH
Q psy5769 288 KGL-NPGRAIAEIKKLL 303 (365)
Q Consensus 288 ~gI-~~~~~I~~lR~~l 303 (365)
.++ +.+..|..+-+.+
T Consensus 87 ~~~~~~~v~i~~le~~i 103 (457)
T COG0493 87 LGIEELPVNIGALERAI 103 (457)
T ss_pred eccCCCchhhhhHHHHH
Confidence 774 4566666665544
No 304
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=52.72 E-value=8.6 Score=39.81 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=24.9
Q ss_pred cccccccccc--ccccCcCCCChHHHHHHHHH
Q psy5769 272 SVYRCHTIMN--CTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 272 ~l~~Ct~Cg~--C~~vCP~gI~~~~~I~~lR~ 301 (365)
...+|..|+. |...||.++++...|..+++
T Consensus 42 ~a~rc~~c~~~~C~~~CP~~~~~~~~~~~~~~ 73 (471)
T PRK12810 42 QAARCMDCGIPFCHWGCPVHNYIPEWNDLVYR 73 (471)
T ss_pred HHHhccCCCCCcccccCCCCCcHHHHHHHHHC
Confidence 3566777766 99999999999999998764
No 305
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=52.71 E-value=5.9 Score=44.32 Aligned_cols=20 Identities=25% Similarity=0.702 Sum_probs=17.5
Q ss_pred chhcccCCcccccCCCceeC
Q psy5769 216 LYECILCACCSTSCPSYWWN 235 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~ 235 (365)
...|+.||.|.++||+....
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL~ 222 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALS 222 (819)
T ss_pred cccccccCcHHHhCCCCccc
Confidence 36899999999999998764
No 306
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=52.52 E-value=5 Score=31.00 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.8
Q ss_pred cccccccccccccCcCCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI~ 291 (365)
-+.|..||.|..+||--.+
T Consensus 7 rd~Cigcg~C~~~aPdvF~ 25 (68)
T COG1141 7 RDTCIGCGACLAVAPDVFD 25 (68)
T ss_pred hhhccccchhhhcCCccee
Confidence 3789999999999995444
No 307
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=52.09 E-value=6 Score=40.39 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=14.7
Q ss_pred chhcccCCcccccCCC
Q psy5769 216 LYECILCACCSTSCPS 231 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~ 231 (365)
.+.|.+||.|...||.
T Consensus 66 a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 66 ANLCHNCGACLHACQY 81 (389)
T ss_pred HHhCcCcccccccCcC
Confidence 4689999999999998
No 308
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=50.78 E-value=5.9 Score=38.86 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=15.9
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
+...|..||.|..+||...
T Consensus 287 d~~~C~gCg~C~~~CP~~A 305 (312)
T PRK14028 287 DYQYCKGCGVCAEVCPTGA 305 (312)
T ss_pred CcccCcCcCchhhhCCHhh
Confidence 3467999999999999754
No 309
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=50.54 E-value=11 Score=31.92 Aligned_cols=34 Identities=24% Similarity=0.616 Sum_probs=26.8
Q ss_pred ccccccccccccccccccCCccccccccccchhhHHHHhh
Q psy5769 41 LACISKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 80 (365)
Q Consensus 41 laC~t~v~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~ 80 (365)
-.|.|+++-. .|-+.-|+|.|.-.|+++|+++|.
T Consensus 78 P~Cgt~levE------~~~Pg~P~~hD~epDid~fy~~wl 111 (112)
T PF08882_consen 78 PGCGTQLEVE------APPPGYPPIHDFEPDIDTFYREWL 111 (112)
T ss_pred CCCcceeEEc------cCCCCCCceEecccCHHHHHHHhc
Confidence 3477777532 356789999999999999999874
No 310
>PRK12831 putative oxidoreductase; Provisional
Probab=50.14 E-value=9.3 Score=39.60 Aligned_cols=30 Identities=27% Similarity=0.606 Sum_probs=25.9
Q ss_pred ccccccccc--cccccCcCCCChHHHHHHHHH
Q psy5769 272 SVYRCHTIM--NCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 272 ~l~~Ct~Cg--~C~~vCP~gI~~~~~I~~lR~ 301 (365)
...+|..|+ -|...||.++++...|..+++
T Consensus 38 ea~rc~~c~~~~C~~~CP~~~~i~~~~~~~~~ 69 (464)
T PRK12831 38 EASRCLQCKKPKCVKGCPVSINIPGFISKLKE 69 (464)
T ss_pred HHHhhcCCCCCchhhhCCCCCCHHHHHHHHHC
Confidence 367899998 599999999999999988764
No 311
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=49.93 E-value=6 Score=45.22 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=16.0
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|+.||.|..+||+..
T Consensus 925 ~~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 925 DAMCNECGNCAQFCPWNG 942 (1019)
T ss_pred CccCccccchhhhCCCCC
Confidence 478999999999999964
No 312
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=49.84 E-value=4.6 Score=37.12 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=16.2
Q ss_pred chhcccCCcccccCCCcee
Q psy5769 216 LYECILCACCSTSCPSYWW 234 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~ 234 (365)
...|+.||.|..+||+...
T Consensus 143 ~~~C~~Cg~Cv~vCP~~AI 161 (191)
T PRK05113 143 SDLCTGCDLCVAPCPTDCI 161 (191)
T ss_pred CCcCCchHHHHHHcCcCce
Confidence 3689999999999998653
No 313
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=48.85 E-value=5.3 Score=35.69 Aligned_cols=18 Identities=33% Similarity=0.803 Sum_probs=15.7
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|+.||.|..+||+..
T Consensus 142 ~~~C~~Cg~Cv~~CP~~A 159 (165)
T TIGR01944 142 ADECTGCDLCVEPCPTDC 159 (165)
T ss_pred cccccChhHHHHhcCcCc
Confidence 367999999999999864
No 314
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=48.66 E-value=6 Score=29.53 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.1
Q ss_pred cccccccccccccCcC
Q psy5769 273 VYRCHTIMNCTRTCPK 288 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~ 288 (365)
-..|+.||.|...||.
T Consensus 5 ~~~C~gcg~C~~~aP~ 20 (65)
T PF13459_consen 5 RDRCIGCGLCVELAPE 20 (65)
T ss_pred cccCcCccHHHhhCCc
Confidence 4679999999999993
No 315
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=48.32 E-value=5.9 Score=39.30 Aligned_cols=17 Identities=35% Similarity=0.815 Sum_probs=15.1
Q ss_pred ccccccccccccCcCCC
Q psy5769 274 YRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 274 ~~Ct~Cg~C~~vCP~gI 290 (365)
-.|..|+.|.++||.+.
T Consensus 205 ~fC~~C~~C~~~CP~~A 221 (314)
T TIGR02486 205 KFCETCGKCADECPSGA 221 (314)
T ss_pred ccCcchhHHHhhCCccc
Confidence 47999999999999874
No 316
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=48.20 E-value=6.7 Score=32.42 Aligned_cols=19 Identities=26% Similarity=0.733 Sum_probs=16.4
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
+...|.+||.|.-+||...
T Consensus 63 ~yegClECGTCRvlc~~~~ 81 (99)
T COG2440 63 DYEGCLECGTCRVLCPHSG 81 (99)
T ss_pred eecCeeeccceeEecCCCc
Confidence 4578999999999999843
No 317
>PRK08764 ferredoxin; Provisional
Probab=48.16 E-value=7.2 Score=33.67 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=15.7
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|+.||.|..+||+..
T Consensus 114 ~~~C~~Cg~Cv~~CP~~A 131 (135)
T PRK08764 114 APLCTGCELCVPACPVDC 131 (135)
T ss_pred CCcCcCccchhhhcCccc
Confidence 468999999999999864
No 318
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=47.73 E-value=6.9 Score=39.97 Aligned_cols=17 Identities=35% Similarity=0.841 Sum_probs=15.4
Q ss_pred cchhcccCCcccccCCC
Q psy5769 215 GLYECILCACCSTSCPS 231 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~ 231 (365)
....|+.||.|..+||.
T Consensus 375 ~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 375 IEEECVGCNLCAHVCPV 391 (420)
T ss_pred chhhCcccchHHhhCCC
Confidence 45789999999999998
No 319
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=47.59 E-value=6.4 Score=37.09 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=17.3
Q ss_pred chhcccCCcccccCCCceeC
Q psy5769 216 LYECILCACCSTSCPSYWWN 235 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~~ 235 (365)
...|+.||.|..+||+....
T Consensus 189 ~~~C~~Cg~Cv~vCP~gAL~ 208 (234)
T PRK07569 189 SETCTSCGKCVQACPTGAIF 208 (234)
T ss_pred cccccchHHHHHhCCCCcEE
Confidence 46899999999999998753
No 320
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=47.53 E-value=11 Score=38.75 Aligned_cols=29 Identities=28% Similarity=0.545 Sum_probs=25.6
Q ss_pred cccccccc----cccccCcCCCChHHHHHHHHH
Q psy5769 273 VYRCHTIM----NCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 273 l~~Ct~Cg----~C~~vCP~gI~~~~~I~~lR~ 301 (365)
..+|..|. -|...||.++++...|..++.
T Consensus 25 a~rc~~c~~~~~~C~~~CP~~~~i~~~~~~~~~ 57 (449)
T TIGR01316 25 AQRCLNCKDATKPCIKGCPVHVPIPEFIAKIQE 57 (449)
T ss_pred HhhCcCccCCCCChhhhCCCCCCHHHHHHHHHC
Confidence 47799997 799999999999999998764
No 321
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=47.33 E-value=6.7 Score=38.94 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=16.2
Q ss_pred ccchhcccCCcccccCCCc
Q psy5769 214 DGLYECILCACCSTSCPSY 232 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~ 232 (365)
.+.+.||.||.|..+||..
T Consensus 198 id~~~Ci~Cg~Ci~~Cp~~ 216 (317)
T COG2221 198 IDGSKCIGCGKCIRACPKA 216 (317)
T ss_pred EehhhccCccHHhhhCChh
Confidence 4568999999999999943
No 322
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=46.73 E-value=6.3 Score=40.31 Aligned_cols=19 Identities=26% Similarity=0.725 Sum_probs=16.2
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
+...|+.||.|..+||...
T Consensus 328 d~~~Ci~CGaCV~aCP~~A 346 (391)
T TIGR03287 328 NTEDCFGCGYCAEICPGGA 346 (391)
T ss_pred ChHhCcChHHHHhhCCccc
Confidence 4578999999999999754
No 323
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=46.43 E-value=7.8 Score=45.05 Aligned_cols=18 Identities=28% Similarity=0.820 Sum_probs=16.1
Q ss_pred cchhcccCCcccccCCCc
Q psy5769 215 GLYECILCACCSTSCPSY 232 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~ 232 (365)
....|+.||.|..+||..
T Consensus 737 ~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 737 SPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred ccccCcCccchhhhcCCC
Confidence 457899999999999985
No 324
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=45.56 E-value=6.3 Score=38.47 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=15.9
Q ss_pred cccccccccccccCcCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI 290 (365)
...|..|+.|.++||++.
T Consensus 158 ~~~C~~C~~C~~aCPt~A 175 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQA 175 (282)
T ss_pred CCCCccHHHHHHhcCccc
Confidence 457999999999999875
No 325
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.22 E-value=12 Score=38.34 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=25.1
Q ss_pred ccccccc--ccccccCcCCCChHHHHHHHHH
Q psy5769 273 VYRCHTI--MNCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 273 l~~Ct~C--g~C~~vCP~gI~~~~~I~~lR~ 301 (365)
..+|..| ..|...||.++++...|..+++
T Consensus 39 ~~rc~~c~~~~c~~~cp~~~~~~~~~~~~~~ 69 (457)
T PRK11749 39 ASRCLQCKDAPCVKACPVSIDIPEFIRLIAE 69 (457)
T ss_pred HHHhhCCCCCcccccCCCcCCHHHHHHHHHC
Confidence 5678888 7899999999999999988764
No 326
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=44.59 E-value=8.2 Score=39.00 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=16.3
Q ss_pred chhcccCCcccccCCCcee
Q psy5769 216 LYECILCACCSTSCPSYWW 234 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~~ 234 (365)
...|+.||.|..+||+...
T Consensus 49 ~~~C~~Cg~Cv~~CP~~Ai 67 (374)
T TIGR02512 49 ESNCIGCGQCSLVCPVGAI 67 (374)
T ss_pred cccCcCccCHHHhCCCChh
Confidence 4679999999999998653
No 327
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=44.54 E-value=7.5 Score=36.68 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=14.9
Q ss_pred ccccccccccccCcCCC
Q psy5769 274 YRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 274 ~~Ct~Cg~C~~vCP~gI 290 (365)
..|+.|+.|..+||.+.
T Consensus 148 ~~C~~C~~C~~~CP~~a 164 (234)
T TIGR02700 148 KRCKGCGICVDACPRSA 164 (234)
T ss_pred hHCcCcchHHHhCCccc
Confidence 46999999999999764
No 328
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=43.95 E-value=8.9 Score=31.52 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=16.1
Q ss_pred ccccccccccccccCcCCC
Q psy5769 272 SVYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 272 ~l~~Ct~Cg~C~~vCP~gI 290 (365)
....|+.||.|..+||.+.
T Consensus 59 d~e~CigCg~C~~~C~~~~ 77 (95)
T PRK15449 59 DYAGCLECGTCRILGLGSA 77 (95)
T ss_pred cCCCCCcchhhhhhcCCCC
Confidence 3568999999999999764
No 329
>PRK13669 hypothetical protein; Provisional
Probab=42.94 E-value=11 Score=29.89 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=23.8
Q ss_pred ccCCCcc-cccCCCCCCcCccEE----EeCCccccc
Q psy5769 12 EMDPTLT-FRRSCREGICGSCAM----NIGGVNTLA 42 (365)
Q Consensus 12 ~~d~~l~-~~~~C~~~~CgsC~v----~inG~~~la 42 (365)
..||.+. .+++|.+ -||.|+. .|||+++-|
T Consensus 24 e~dP~~dVie~gCls-~CG~C~~~~FAlVng~~V~a 58 (78)
T PRK13669 24 EKDPNLDVLEYGCLG-YCGICSEGLFALVNGEVVEG 58 (78)
T ss_pred HhCCCceEEEcchhh-hCcCcccCceEEECCeEeec
Confidence 3599999 7788865 8999985 599998755
No 330
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=41.86 E-value=29 Score=39.56 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=17.7
Q ss_pred cccchhcccCCc--c------------cccCCCce
Q psy5769 213 LDGLYECILCAC--C------------STSCPSYW 233 (365)
Q Consensus 213 l~~~~~CI~CG~--C------------~s~CP~~~ 233 (365)
+.+..+|+.||. | .++||+..
T Consensus 184 ~~ea~RC~~C~~p~C~~~~~~~~~~~~~~~CP~~~ 218 (944)
T PRK12779 184 WLEVMRDKQCDDKPCELGVLVQGKAEPKGGCPVKI 218 (944)
T ss_pred HHHHHHhcCCCCCCCCCCcccccccCcCCCCcCCC
Confidence 457889999998 9 57999985
No 331
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=41.78 E-value=9.8 Score=32.99 Aligned_cols=19 Identities=26% Similarity=0.665 Sum_probs=15.9
Q ss_pred cccccccc-----cccccCcCCCC
Q psy5769 273 VYRCHTIM-----NCTRTCPKGLN 291 (365)
Q Consensus 273 l~~Ct~Cg-----~C~~vCP~gI~ 291 (365)
...|+.|+ .|..+||.++-
T Consensus 7 ~~~C~gC~~~~~~~Cv~~CP~~ai 30 (132)
T TIGR02060 7 PTKCDGCKAGEKTACVYICPNDLM 30 (132)
T ss_pred cccccCccCCchhcCHhhcCccce
Confidence 45799999 99999997643
No 332
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=41.59 E-value=14 Score=39.60 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=13.7
Q ss_pred ccchhcccCCcccccCCC
Q psy5769 214 DGLYECILCACCSTSCPS 231 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~ 231 (365)
.+..+||+||+|+.+|-.
T Consensus 139 ~d~~rCI~C~rCvr~c~e 156 (603)
T TIGR01973 139 TEMTRCIHCTRCVRFANE 156 (603)
T ss_pred ecCCcCccccHHHHHHHH
Confidence 556788888888888854
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=41.03 E-value=8.4 Score=41.38 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.3
Q ss_pred ccchhcccCCcccccCCCcee
Q psy5769 214 DGLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~ 234 (365)
....-||.||.|+.-||.-..
T Consensus 46 ~~e~~c~~c~~c~~~cp~~a~ 66 (590)
T PRK13409 46 ISEELCIGCGICVKKCPFDAI 66 (590)
T ss_pred eeHhhccccccccccCCcceE
Confidence 344679999999999998754
No 334
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=40.90 E-value=13 Score=42.18 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=23.0
Q ss_pred CcccccCCCCCCcCccEEEe--CCcc--ccccc
Q psy5769 16 TLTFRRSCREGICGSCAMNI--GGVN--TLACI 44 (365)
Q Consensus 16 ~l~~~~~C~~~~CgsC~v~i--nG~~--~laC~ 44 (365)
||.-+..|..|+||+|+|.+ +|+. +++|.
T Consensus 876 SlE~~M~CG~G~C~~C~v~~~~~G~~~~~~vC~ 908 (944)
T PRK12779 876 SLNSIMVDATGMCGACMVPVTIDGKMVRKHACI 908 (944)
T ss_pred eecccccCCCeeeCeeeeeeecCCeeeeeEEEC
Confidence 46667889999999999964 7753 67884
No 335
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=40.73 E-value=10 Score=39.80 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.7
Q ss_pred hhcccCCcccccCCCcee
Q psy5769 217 YECILCACCSTSCPSYWW 234 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~ 234 (365)
.-||.||.|..-||.-..
T Consensus 50 ~lCiGCGICvkkCPF~AI 67 (591)
T COG1245 50 ELCIGCGICVKKCPFDAI 67 (591)
T ss_pred hhhccchhhhccCCcceE
Confidence 569999999999998753
No 336
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=40.01 E-value=16 Score=40.17 Aligned_cols=30 Identities=30% Similarity=0.676 Sum_probs=25.8
Q ss_pred ccccccccc--cccccCcCCCChHHHHHHHHH
Q psy5769 272 SVYRCHTIM--NCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 272 ~l~~Ct~Cg--~C~~vCP~gI~~~~~I~~lR~ 301 (365)
...+|..|+ .|...||.++++.+.|..+++
T Consensus 327 ea~rC~~c~~~~C~~~Cp~~~~i~~~~~~~~~ 358 (752)
T PRK12778 327 EAKRCLDCKNPGCVEGCPVGIDIPRFIKNIER 358 (752)
T ss_pred HHHHhhcCCCCcccccCcCCCCHHHHHHHHHC
Confidence 467899998 599999999999999988764
No 337
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=38.97 E-value=22 Score=35.42 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=22.6
Q ss_pred ccchhcccCCcccccCCCceeCC-cccCCHHH
Q psy5769 214 DGLYECILCACCSTSCPSYWWNG-EKYLGPAV 244 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~~~~~-~~~lgP~~ 244 (365)
.+...||.||-|..+||...... +++..|..
T Consensus 218 I~~~~ci~c~~c~~ac~~gav~~~W~~~~~~f 249 (354)
T COG2768 218 IDYEKCIGCGQCMEACPYGAVDQNWEEDSPEF 249 (354)
T ss_pred echhhccchhhhhhhccCcccccchhhccHHH
Confidence 35678999999999999886532 34556643
No 338
>PRK13795 hypothetical protein; Provisional
Probab=38.78 E-value=12 Score=40.78 Aligned_cols=20 Identities=30% Similarity=0.802 Sum_probs=16.9
Q ss_pred cchhcccCCcccccCCCcee
Q psy5769 215 GLYECILCACCSTSCPSYWW 234 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~~ 234 (365)
+...|+.||.|..+||....
T Consensus 610 d~~~C~~Cg~C~~aCP~~a~ 629 (636)
T PRK13795 610 DEEKCIHCGKCTEVCPVVKY 629 (636)
T ss_pred chhhcCChhHHHhhcCCCee
Confidence 34689999999999998754
No 339
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=38.58 E-value=20 Score=41.18 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=25.1
Q ss_pred cccccccc--cccccCcCCCChHHHHHHHHH
Q psy5769 273 VYRCHTIM--NCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 273 l~~Ct~Cg--~C~~vCP~gI~~~~~I~~lR~ 301 (365)
..+|..|+ .|...||.++++...|..+++
T Consensus 330 a~rC~~c~~~~C~~~CP~~~dip~~~~~i~~ 360 (1006)
T PRK12775 330 AERCIQCAKPTCIAGCPVQIDIPVFIRHVVV 360 (1006)
T ss_pred HHhccCCCCccccCCCCCCCCHHHHHHHHHC
Confidence 45899997 799999999999999987763
No 340
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=36.91 E-value=11 Score=38.42 Aligned_cols=16 Identities=38% Similarity=0.891 Sum_probs=14.5
Q ss_pred hcccCCcccccCCCce
Q psy5769 218 ECILCACCSTSCPSYW 233 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~~ 233 (365)
.||.||.|.++|+...
T Consensus 246 ~CI~C~~CidaCd~~~ 261 (386)
T COG0348 246 ECIGCGRCIDACDDDM 261 (386)
T ss_pred ccccHhhHhhhCCHHh
Confidence 6999999999999765
No 341
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=34.96 E-value=14 Score=42.42 Aligned_cols=16 Identities=38% Similarity=0.766 Sum_probs=14.4
Q ss_pred hcccCCcccccCCCce
Q psy5769 218 ECILCACCSTSCPSYW 233 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~~ 233 (365)
.|+.||.|..+||...
T Consensus 922 ~C~~CG~C~~vCP~~a 937 (1012)
T TIGR03315 922 MCNECGNCATFCPYDG 937 (1012)
T ss_pred cccccchHHHhCCCCc
Confidence 4999999999999964
No 342
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=34.94 E-value=15 Score=38.68 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.9
Q ss_pred cccccccccccccCcCC
Q psy5769 273 VYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~g 289 (365)
--.|+.||-|+..||.+
T Consensus 49 E~lCiGCGICvkkCPF~ 65 (591)
T COG1245 49 EELCIGCGICVKKCPFD 65 (591)
T ss_pred hhhhccchhhhccCCcc
Confidence 35799999999999975
No 343
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=32.94 E-value=14 Score=35.35 Aligned_cols=18 Identities=28% Similarity=0.796 Sum_probs=15.7
Q ss_pred ccccccccccccCcCCCC
Q psy5769 274 YRCHTIMNCTRTCPKGLN 291 (365)
Q Consensus 274 ~~Ct~Cg~C~~vCP~gI~ 291 (365)
..|..|+.|..+||.++-
T Consensus 169 ~~C~~C~~C~~~CP~~vi 186 (259)
T cd07030 169 EDCDGCGKCVEECPRGVL 186 (259)
T ss_pred hhCCChHHHHHhCCccce
Confidence 469999999999998864
No 344
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=32.71 E-value=14 Score=39.07 Aligned_cols=17 Identities=29% Similarity=0.809 Sum_probs=11.6
Q ss_pred chhcccCCcccccCCCc
Q psy5769 216 LYECILCACCSTSCPSY 232 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~ 232 (365)
...|+.||.|..+||..
T Consensus 540 ~~~C~~Cg~C~~~CP~~ 556 (564)
T PRK12771 540 YDKCTGCHICADVCPCG 556 (564)
T ss_pred cccCcChhHHHhhcCcC
Confidence 45677777777777754
No 345
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=32.54 E-value=16 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=14.7
Q ss_pred ccccccccccccCcCCC
Q psy5769 274 YRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 274 ~~Ct~Cg~C~~vCP~gI 290 (365)
..|..||.|.++|+.+.
T Consensus 69 e~C~~CG~C~~vC~f~A 85 (284)
T COG1149 69 EKCIRCGKCAEVCRFGA 85 (284)
T ss_pred hhccccCcHHHhCCCCe
Confidence 44999999999999764
No 346
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=32.10 E-value=17 Score=37.23 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=15.5
Q ss_pred cccccccccccccCcCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI 290 (365)
...|..|+.|..+||.+.
T Consensus 9 ~~~Ci~C~~C~~~CP~~a 26 (411)
T TIGR03224 9 PEICIRCNTCEETCPIDA 26 (411)
T ss_pred cccCcCccchhhhCCccc
Confidence 467999999999999764
No 347
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=32.03 E-value=19 Score=36.59 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.9
Q ss_pred chhcccCCcccccCCCce
Q psy5769 216 LYECILCACCSTSCPSYW 233 (365)
Q Consensus 216 ~~~CI~CG~C~s~CP~~~ 233 (365)
...|-.||.|...||...
T Consensus 47 a~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 47 AHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred HHHCcCcccccccCcCCC
Confidence 678999999999999853
No 348
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=31.98 E-value=13 Score=39.89 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=13.8
Q ss_pred hcccCCcccccCCCc
Q psy5769 218 ECILCACCSTSCPSY 232 (365)
Q Consensus 218 ~CI~CG~C~s~CP~~ 232 (365)
.|+.||.|..+||..
T Consensus 579 ~C~~Cg~C~~~CP~~ 593 (595)
T TIGR03336 579 LCTGCGVCAQICPFD 593 (595)
T ss_pred CCcCHHHHHhhCccc
Confidence 699999999999974
No 349
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=31.86 E-value=14 Score=35.29 Aligned_cols=17 Identities=29% Similarity=0.964 Sum_probs=15.1
Q ss_pred ccccccccccccCcCCC
Q psy5769 274 YRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 274 ~~Ct~Cg~C~~vCP~gI 290 (365)
..|..|+.|..+||.++
T Consensus 169 ~~C~~C~~C~~~CP~~v 185 (263)
T PRK00783 169 EDCDECEKCVEACPRGV 185 (263)
T ss_pred ccCCchHHHHHhCCccc
Confidence 56999999999999874
No 350
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=31.80 E-value=15 Score=36.79 Aligned_cols=18 Identities=22% Similarity=0.587 Sum_probs=15.2
Q ss_pred cccccccccccccCcCCC
Q psy5769 273 VYRCHTIMNCTRTCPKGL 290 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI 290 (365)
...|+.||.|..+||..|
T Consensus 4 ~~~c~~Cg~C~a~cp~~i 21 (332)
T COG1035 4 AGLCTGCGTCAAVCPYAI 21 (332)
T ss_pred CcccccchhhHhhCCceE
Confidence 356999999999999844
No 351
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=31.24 E-value=14 Score=34.85 Aligned_cols=19 Identities=32% Similarity=0.908 Sum_probs=16.5
Q ss_pred cchhcccCCcccccCCCce
Q psy5769 215 GLYECILCACCSTSCPSYW 233 (365)
Q Consensus 215 ~~~~CI~CG~C~s~CP~~~ 233 (365)
....|+.||.|..+||...
T Consensus 201 ~~~~C~~C~~C~~~CP~~~ 219 (228)
T TIGR03294 201 NRDRCIKCGACYVQCPRAF 219 (228)
T ss_pred ChhhccCHHHHHHHcCCCC
Confidence 4578999999999999864
No 352
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=30.01 E-value=33 Score=35.74 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=25.9
Q ss_pred cccccccccc--ccc--cCcCCCChHHHHHHHHH
Q psy5769 272 SVYRCHTIMN--CTR--TCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 272 ~l~~Ct~Cg~--C~~--vCP~gI~~~~~I~~lR~ 301 (365)
...+|+.|.. |.. .||.++++...|..+++
T Consensus 40 ~~~rc~~c~~~~C~~~~~CP~~~~i~~~~~~~~~ 73 (485)
T TIGR01317 40 QAARCMDCGTPFCHNDSGCPLNNLIPEFNDLVFR 73 (485)
T ss_pred HHHhccCCCCCCCCCCCCCCCCCcHHHHHHHHHC
Confidence 4678999986 999 99999999999887753
No 353
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=29.87 E-value=22 Score=36.49 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.6
Q ss_pred ccchhcccCCcccccCCCc
Q psy5769 214 DGLYECILCACCSTSCPSY 232 (365)
Q Consensus 214 ~~~~~CI~CG~C~s~CP~~ 232 (365)
.+...|+.||.|.++||..
T Consensus 269 id~~~C~~Cm~Ci~~~p~a 287 (402)
T TIGR02064 269 IDNRECVRCMHCINKMPKA 287 (402)
T ss_pred EcchhcCcCccccccCccc
Confidence 4567899999999999974
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=27.85 E-value=25 Score=37.83 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.9
Q ss_pred cccccccccccccCcCC
Q psy5769 273 VYRCHTIMNCTRTCPKG 289 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~g 289 (365)
-..|..||-|+..||.+
T Consensus 48 e~~c~~c~~c~~~cp~~ 64 (590)
T PRK13409 48 EELCIGCGICVKKCPFD 64 (590)
T ss_pred HhhccccccccccCCcc
Confidence 35799999999999966
No 355
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=26.81 E-value=26 Score=36.60 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=25.5
Q ss_pred ccccccccc-cccccCcCCCChHHHHHHHHH
Q psy5769 272 SVYRCHTIM-NCTRTCPKGLNPGRAIAEIKK 301 (365)
Q Consensus 272 ~l~~Ct~Cg-~C~~vCP~gI~~~~~I~~lR~ 301 (365)
...+|..|+ .|...||..++++.-|..+|+
T Consensus 21 ~a~rCl~C~~~C~~~cp~~~~IP~~~~lv~~ 51 (457)
T COG0493 21 EAARCLDCGDPCITGCPVHNDIPEPIGLVRE 51 (457)
T ss_pred HHHHHHcCCCccccCCcCCCcCCCHHHHHhc
Confidence 356799999 599999999999998888775
No 356
>KOG0430|consensus
Probab=26.76 E-value=37 Score=39.32 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=28.7
Q ss_pred cCCCCCCcCccEEEeCCc---------ccccccccccc--cccccccccCCc
Q psy5769 21 RSCREGICGSCAMNIGGV---------NTLACISKIDA--NDKVSKIYPLPH 61 (365)
Q Consensus 21 ~~C~~~~CgsC~v~inG~---------~~laC~t~v~~--~~~~~~~~p~~~ 61 (365)
.+|.+|-||+|.|+|-.. .+=||-|++.. +...++.|=|.+
T Consensus 38 lgC~EGGCGaCtv~ls~~dp~~~~~~~avNsCLt~l~s~~g~~VtT~EGlGn 89 (1257)
T KOG0430|consen 38 LGCGEGGCGACTVVLSKYDPELKVRHWAVNSCLTLLNSVHGLEVTTSEGLGN 89 (1257)
T ss_pred eccCCCCccceEEEEeccCCCceeEEeehhhhhhhcccccceEEEeeecccc
Confidence 489999999999999883 34578887743 334445555443
No 357
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=25.56 E-value=29 Score=35.71 Aligned_cols=21 Identities=38% Similarity=0.812 Sum_probs=17.6
Q ss_pred cccccccccccccCcCCCChH
Q psy5769 273 VYRCHTIMNCTRTCPKGLNPG 293 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI~~~ 293 (365)
.-.|+.||.|..+||..+.+.
T Consensus 271 ~~~C~~Cm~Ci~~~p~a~~~g 291 (402)
T TIGR02064 271 NRECVRCMHCINKMPKALHPG 291 (402)
T ss_pred chhcCcCccccccCcccccCC
Confidence 467999999999999876654
No 358
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=24.92 E-value=23 Score=35.63 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=17.5
Q ss_pred cccccccccccccCcCCCChH
Q psy5769 273 VYRCHTIMNCTRTCPKGLNPG 293 (365)
Q Consensus 273 l~~Ct~Cg~C~~vCP~gI~~~ 293 (365)
...|..|..|.++||.+-=..
T Consensus 184 ~~~Cg~C~~CldaCPt~Al~~ 204 (337)
T COG1600 184 EDHCGSCTRCLDACPTGALVA 204 (337)
T ss_pred CccChhhHHHHhhCCcccccC
Confidence 388999999999999875543
No 359
>PF12461 DUF3688: Protein of unknown function (DUF3688) ; InterPro: IPR022160 This entry is represented by Spiroplasma phage 1-C74, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This domain family is found in bacteria and viruses, and is typically between 79 and 104 amino acids in length. There is a conserved YRW sequence motif. There is a single completely conserved residue Y that may be functionally important.
Probab=24.75 E-value=43 Score=27.22 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=9.9
Q ss_pred hhccccCCCCCCCCcchh
Q psy5769 125 FAIYRWNPDKPDEKPTMQ 142 (365)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (365)
.+||||+ ++.+|.+=
T Consensus 61 KsvYRWd---G~gEPq~P 75 (91)
T PF12461_consen 61 KSVYRWD---GVGEPQTP 75 (91)
T ss_pred EEEEEec---CCCCccCc
Confidence 4799997 44566443
No 360
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=23.76 E-value=57 Score=25.86 Aligned_cols=29 Identities=31% Similarity=0.649 Sum_probs=22.0
Q ss_pred cCCCccc-ccCCCCCCcCccEE----EeCCccccc
Q psy5769 13 MDPTLTF-RRSCREGICGSCAM----NIGGVNTLA 42 (365)
Q Consensus 13 ~d~~l~~-~~~C~~~~CgsC~v----~inG~~~la 42 (365)
.||.+.. .++|- +.||.|.. .|||+.+-|
T Consensus 25 ~~p~~~Vie~gCl-~~Cg~C~~~pFAlVnG~~V~A 58 (78)
T PF07293_consen 25 KDPDIDVIEYGCL-SYCGPCAKKPFALVNGEIVAA 58 (78)
T ss_pred cCCCccEEEcChh-hhCcCCCCCccEEECCEEEec
Confidence 3788875 57785 48999985 599997755
No 361
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=22.93 E-value=34 Score=39.31 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=31.9
Q ss_pred HHHHHHHhhh-------ccCCCcccccCCC-CCCcCccEEEeCCccc--ccccccccc
Q psy5769 2 VLDALIKIKN-------EMDPTLTFRRSCR-EGICGSCAMNIGGVNT--LACISKIDA 49 (365)
Q Consensus 2 vl~al~~i~~-------~~d~~l~~~~~C~-~~~CgsC~v~inG~~~--laC~t~v~~ 49 (365)
++.++..+.+ ....|+.-..-|. .|+||-|.+.++|+.+ +||.-+=.+
T Consensus 946 mm~~~~~~~~~~~~~~~~~i~svns~M~c~m~giC~qC~~~~~G~~k~vfaC~~~~~~ 1003 (1028)
T PRK06567 946 IIEELQSLKNEIFGENTEIIVSVNSSMQCMMKGICGQCIQKVKGEQKYIFACSQQNQN 1003 (1028)
T ss_pred HHHHHHHHHhhhccCCCcEEEecCcHHHHHhhhhhhhheEEecCeeEEEEEecCCCCc
Confidence 3556666653 1122333334597 7999999999999866 999874433
No 362
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=20.91 E-value=71 Score=27.09 Aligned_cols=24 Identities=29% Similarity=0.700 Sum_probs=20.5
Q ss_pred cCCCCccccccCcChHHHHHHHHh
Q psy5769 333 PLPHMYVVKDLVPDMNNFYAQYKS 356 (365)
Q Consensus 333 PL~~~~viRDL~vd~~~f~~~~~~ 356 (365)
+-+..+++.|+.+|++.|+++|.+
T Consensus 89 ~~Pg~P~~hD~epDid~fy~~wlk 112 (112)
T PF08882_consen 89 PPPGYPPIHDFEPDIDTFYREWLK 112 (112)
T ss_pred CCCCCCceEecccCHHHHHHHhcC
Confidence 356788999999999999999864
No 363
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=20.53 E-value=92 Score=31.03 Aligned_cols=33 Identities=24% Similarity=0.676 Sum_probs=24.6
Q ss_pred cccCCC-CCCcCccEEEeC--C-c-----------------ccccccccccccc
Q psy5769 19 FRRSCR-EGICGSCAMNIG--G-V-----------------NTLACISKIDAND 51 (365)
Q Consensus 19 ~~~~C~-~~~CgsC~v~in--G-~-----------------~~laC~t~v~~~~ 51 (365)
.-..|. .|.||-|-|+|- | . -||||++.|...|
T Consensus 68 i~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ~~Vk~dm 121 (410)
T COG2871 68 ISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQVNVKHDM 121 (410)
T ss_pred cccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEEecccccc
Confidence 334584 579999999973 2 1 3699999998776
No 364
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=20.02 E-value=48 Score=36.97 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=14.7
Q ss_pred hhcccCCcccccCCCceeC
Q psy5769 217 YECILCACCSTSCPSYWWN 235 (365)
Q Consensus 217 ~~CI~CG~C~s~CP~~~~~ 235 (365)
..|..||.|..+||+...+
T Consensus 190 ~~~~~cG~cv~vCP~GAl~ 208 (797)
T PRK07860 190 FQSYFSGNTVQICPVGALT 208 (797)
T ss_pred cCccccCCchhhCCccccc
Confidence 3467889999999988754
Done!