RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5769
(365 letters)
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 132
Score = 137 bits (345), Expect = 2e-40
Identities = 77/127 (60%), Positives = 98/127 (77%)
Query: 177 MNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNG 236
M FYAQY+ I+P+L + +N ++LQ + R+KLDGLYECILCACCSTSCPS+WWN
Sbjct: 1 MGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNP 60
Query: 237 EKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAI 296
+K++GPA L+ AYR++IDSRD +T RL+ L D FSV+RCH+IMNC CPKGLNP RAI
Sbjct: 61 DKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAI 120
Query: 297 AEIKKLL 303
IK +L
Sbjct: 121 GHIKSML 127
Score = 35.7 bits (81), Expect = 0.002
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 347 MNNFYAQYKSIQPWLPRS 364
M FYAQY+ I+P+L +
Sbjct: 1 MGQFYAQYEKIKPYLLNN 18
Score = 26.8 bits (58), Expect = 2.4
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 5/19 (26%)
Query: 72 MNNFYAQYKSIQRHLGGPW 90
M FYAQY+ I+ P+
Sbjct: 1 MGQFYAQYEKIK-----PY 14
>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 135 bits (339), Expect = 2e-39
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 177 MNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNG 236
M +F ++I+P++ + +Q+ K CI C C +CP + N
Sbjct: 1 MTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP 60
Query: 237 EKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAI 296
+++GPA + A+R+ DSRD +R+ QL V+ C + C+ CPK ++P AI
Sbjct: 61 -EFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAI 119
Query: 297 AEIKK 301
+ K
Sbjct: 120 QQGKV 124
Score = 34.8 bits (79), Expect = 0.004
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 347 MNNFYAQYKSIQPWLPR 363
M +F ++I+P++
Sbjct: 1 MTHFIESLEAIKPYIIG 17
Score = 26.4 bits (57), Expect = 3.8
Identities = 4/19 (21%), Positives = 9/19 (47%), Gaps = 5/19 (26%)
Query: 72 MNNFYAQYKSIQRHLGGPW 90
M +F ++I+ P+
Sbjct: 1 MTHFIESLEAIK-----PY 14
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 133
Score = 124 bits (312), Expect = 1e-35
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 180 FYAQYKSIQPWLQRDKEN-IGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEK 238
F + ++ W+ KE+ I + + +++ L CI C CC +C + +
Sbjct: 5 FNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRED- 63
Query: 239 YLGPAVLMQAYRWIIDSRDEKTADR-LNQLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIA 297
++G A L + R++ID DE+T + + D V+ C T++ C CPK L IA
Sbjct: 64 FVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIA 123
Query: 298 EIKKLL 303
+++ +
Sbjct: 124 YLRRKM 129
Score = 33.0 bits (74), Expect = 0.020
Identities = 2/15 (13%), Positives = 6/15 (40%)
Query: 350 FYAQYKSIQPWLPRS 364
F + ++ W+
Sbjct: 5 FNGMSQRVESWIHAQ 19
Score = 26.8 bits (58), Expect = 2.5
Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 49/158 (31%)
Query: 75 FYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK 134
F + ++ W + A+K D
Sbjct: 5 FNGMSQRVE-----SW-----------------------IHAQKE------------HDI 24
Query: 135 PDEKPTMQEYKVDLNNKIDANDKVSKIYPL-PHMYVVKDLVPDMNNFYAQYKSIQPWLQR 193
+ ++ ++D + + +D V I P +R
Sbjct: 25 SKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDER 84
Query: 194 DKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPS 231
E Y + + D DG++ C+ C CP
Sbjct: 85 TDE-----DYYELIGDD---DGVFGCMTLLACHDVCPK 114
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 105
Score = 97.6 bits (243), Expect = 8e-26
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSKIYPLP 60
+LDAL IK+ + P L++R SCR ICGSC M + V LAC + + K+ L
Sbjct: 35 SLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALA 94
Query: 61 HMYVVKDLVPD 71
+ + +DLV D
Sbjct: 95 NFPIERDLVVD 105
Score = 50.6 bits (121), Expect = 7e-09
Identities = 13/100 (13%), Positives = 23/100 (23%), Gaps = 48/100 (48%)
Query: 124 TFAIYRWNPDKPDEKPTMQEYKVDLN---------------------------------- 149
+ R+NP+ D P Y+V +
Sbjct: 7 KIEVVRYNPEV-DTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSC 65
Query: 150 -------------NKIDANDKVSKIYPLPHMYVVKDLVPD 176
+ K+ L + + +DLV D
Sbjct: 66 GMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVD 105
Score = 41.4 bits (97), Expect = 1e-05
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 20/115 (17%)
Query: 232 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHTIMNCTRTCPKGLN 291
+N E A Y + D L +KD ++ +C +
Sbjct: 11 VRYNPEV--DTAPHSAFYE-VPYDATTSLLDALGYIKD-----NLAPDLSYRWSCRMAIC 62
Query: 292 PGRAIAEIKKLLSGLVKKDKPGLDTAALHKIDANDKVSKIYPLPHMYVVKDLVPD 346
G++ + P L A + K+ L + + +DLV D
Sbjct: 63 GS----------CGMMVNNVPKL--ACKTFLRDYTDGMKVEALANFPIERDLVVD 105
>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein,
N-terminal domain {Wolinella succinogenes [TaxId: 844]}
Length = 106
Score = 94.6 bits (235), Expect = 1e-24
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDA-NDKVSKIYPL 59
+ L I+ DP L F CR GICGSC M I G +LAC + D V + PL
Sbjct: 35 TIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDGVITLLPL 94
Query: 60 PHMYVVKDLVPD 71
P ++KDL D
Sbjct: 95 PAFKLIKDLSVD 106
Score = 56.8 bits (137), Expect = 5e-11
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 48/105 (45%)
Query: 120 AKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKID-------------------------- 153
+ T +++++P KP QEYK++ +
Sbjct: 2 GRMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGI 61
Query: 154 ----------------------ANDKVSKIYPLPHMYVVKDLVPD 176
D V + PLP ++KDL D
Sbjct: 62 CGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVD 106
Score = 41.0 bits (96), Expect = 2e-05
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 325 NDKVSKIYPLPHMYVVKDLVPD 346
D V + PLP ++KDL D
Sbjct: 85 EDGVITLLPLPAFKLIKDLSVD 106
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur
protein, N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 106
Score = 84.2 bits (208), Expect = 9e-21
Identities = 40/74 (54%), Positives = 54/74 (72%), Gaps = 4/74 (5%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACISKIDANDKVSK---IY 57
M+LDALI++K DP+L+FRRSCREG+CGS +N+ G N LACI+ I A ++ K I
Sbjct: 34 MLLDALIQLKE-KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIR 92
Query: 58 PLPHMYVVKDLVPD 71
PLP + V++DLV D
Sbjct: 93 PLPGLPVIRDLVVD 106
Score = 51.8 bits (124), Expect = 3e-09
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 52/104 (50%)
Query: 124 TFAIYRWNPDKPDEKPTMQEYKVDLN-----------NKIDAND---------------- 156
F+IYR+NPD D+ P MQ+Y ++ + ++ D
Sbjct: 4 EFSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGS 62
Query: 157 ------------------------KVSKIYPLPHMYVVKDLVPD 176
K I PLP + V++DLV D
Sbjct: 63 DGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVD 106
Score = 41.8 bits (98), Expect = 1e-05
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 273 VYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLVKKDKPGLDTAALHK-IDANDKVSKI 331
+ ++ R+C +G+ GL K GL ++ K I
Sbjct: 42 LKEKDPSLSFRRSCREGVCGS----------DGLNMNGKNGLACITPISALNQPGKKIVI 91
Query: 332 YPLPHMYVVKDLVPD 346
PLP + V++DLV D
Sbjct: 92 RPLPGLPVIRDLVVD 106
>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 80
Score = 31.7 bits (72), Expect = 0.018
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACI 44
+++D L ++++ T + C +G CG+C + + G ACI
Sbjct: 22 LLVDVL---RSQLQLTSV-KVGCGKGQCGACTVILDGKVVRACI 61
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small
subunit QorS, N-domain {Pseudomonas putida [TaxId:
303]}
Length = 81
Score = 30.2 bits (68), Expect = 0.085
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACI 44
+ DAL + + T T + C +G+CGSC + I G +C+
Sbjct: 24 HLADAL---REVVGLTGT-KIGCEQGVCGSCTILIDGAPMRSCL 63
>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio gigas [TaxId: 879]}
Length = 80
Score = 29.4 bits (66), Expect = 0.12
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACI 44
++ D L + ++ T + C +G CG+C++ + G AC+
Sbjct: 22 LLSDVL---RQQLGLTGV-KVGCEQGQCGACSVILDGKVVRACV 61
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Length = 117
Score = 29.5 bits (65), Expect = 0.25
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 219 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHT 278
CI C C+ CP L+ A + + + + + C
Sbjct: 21 CIQCNQCAFVCPHSAILP-VLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMG 79
Query: 279 IMNCTRTCPKG 289
NC CP
Sbjct: 80 CGNCADICPPK 90
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 81
Score = 28.7 bits (64), Expect = 0.29
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACI 44
++LD L + + T T ++ C G CG+C + + LAC
Sbjct: 23 LLLDYL---RETVGLTGT-KQGCDGGECGACTVLVDDRPRLACS 62
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 79
Score = 28.2 bits (63), Expect = 0.35
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACI 44
+++ + + +N C CG+C +++ G++ +C
Sbjct: 22 LLIHFIREQQNLTGA----HIGCDTSHCGACTVDLDGMSVKSCT 61
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 79
Score = 28.2 bits (63), Expect = 0.40
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 1 MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGVNTLACI 44
+++ L + N C CG+C ++I G + +C
Sbjct: 22 LLIHFLREELNLTGA----HIGCETSHCGACTVDIDGRSVKSCT 61
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii
[TaxId: 5861]}
Length = 170
Score = 28.3 bits (62), Expect = 0.89
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 4/106 (3%)
Query: 217 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRC 276
L C S ++ + L + +I + A + L + R
Sbjct: 60 RNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRA 119
Query: 277 HTIMNCTRTCPK----GLNPGRAIAEIKKLLSGLVKKDKPGLDTAA 318
+++ L GR++ EI +L+ L +K G A
Sbjct: 120 FVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPA 165
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
falciparum [TaxId: 5833]}
Length = 89
Score = 26.7 bits (59), Expect = 1.3
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 10/64 (15%)
Query: 206 SLDDRKKLDGLYECILCACCSTSCPSYW----------WNGEKYLGPAVLMQAYRWIIDS 255
+ + L Y+ C+ PS W + L + Y I+
Sbjct: 23 PNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSE 82
Query: 256 RDEK 259
Sbjct: 83 IFPY 86
>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 27.1 bits (59), Expect = 1.3
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 107 SAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNKID 153
S ++ +++ A P + A +N + + ++ V + K D
Sbjct: 3 SGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKD 49
>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 160
Score = 27.0 bits (59), Expect = 2.3
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 22 SCREGICGSCAMNIGGVNT 40
+C G C +C + +
Sbjct: 123 ACGIGACYACVEHDKEDES 141
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
2288]}
Length = 103
Score = 26.3 bits (57), Expect = 2.6
Identities = 13/71 (18%), Positives = 17/71 (23%), Gaps = 19/71 (26%)
Query: 219 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHT 278
CI C +CP + D + DP + C
Sbjct: 45 CIADGSCINACPV-------------------NVFQWYDTPGHPASEKKADPVNEQACIF 85
Query: 279 IMNCTRTCPKG 289
M C CP
Sbjct: 86 CMACVNVCPVA 96
>d1nlxa_ a.24.17.1 (A:) Pollen allergen Phl P 6 {Timothy grass
(Phleum pratense) [TaxId: 15957]}
Length = 104
Score = 25.9 bits (57), Expect = 3.5
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 103 SFQLSAAASSAVPAEKPAKYKTFA 126
SF+ + A ++ VP KYKTF
Sbjct: 15 SFRAAMATTANVPP--ADKYKTFE 36
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 25.2 bits (54), Expect = 4.3
Identities = 8/71 (11%), Positives = 14/71 (19%), Gaps = 14/71 (19%)
Query: 219 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHT 278
C+LC C +C + + + +
Sbjct: 21 CLLCGRCVNACGKNT-------ETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLC------ 67
Query: 279 IMNCTRTCPKG 289
C CP
Sbjct: 68 -GQCIIACPVA 77
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 24.6 bits (53), Expect = 7.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 219 CILCACCSTSCPSYWWNGEKYLGPAV 244
CI C CS CP+ GE ++
Sbjct: 34 CIGCDTCSQYCPTAAIFGEMGEPHSI 59
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9,
Nqo9 {Thermus thermophilus [TaxId: 274]}
Length = 154
Score = 25.2 bits (54), Expect = 8.5
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 219 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYRCHT 278
CI C+ C+ +CP+Y + D + +A ++ RC
Sbjct: 28 CIGCSLCAAACPAYA------------IYVEPAENDPENPVSAGERYAKVYEINMLRCIF 75
Query: 279 IMNCTRTCP 287
C CP
Sbjct: 76 CGLCEEACP 84
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus
[TaxId: 2261]}
Length = 66
Score = 24.0 bits (51), Expect = 8.9
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 219 CILCACCSTSCPSYWWNGE 237
CI A C++ CP + +
Sbjct: 11 CIGDAICASLCPDVFEMND 29
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 25.8 bits (56), Expect = 9.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 219 CILCACCSTSCPSYWWNGE 237
CI C CS +C + W + E
Sbjct: 16 CIGCHTCSVTCKNVWTSRE 34
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 24.6 bits (53), Expect = 9.4
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 71 DMNNFYAQYKSIQRHLGGPWKILGTLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRW 130
+ + Y Q+++I + +G +ILG + + + + K +
Sbjct: 3 TLRDMYEQFQNIMK-MGPFSQILGMIPGF----GTDFMSKGNEQESMARLKKLMTIMDSM 57
Query: 131 NPDKPD 136
N + D
Sbjct: 58 NDQELD 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.427
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,410,801
Number of extensions: 65860
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 66
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)