Query psy5771
Match_columns 108
No_of_seqs 203 out of 1080
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 17:35:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.2E-33 2.5E-38 176.7 10.3 94 15-108 3-96 (205)
2 KOG0094|consensus 100.0 6.2E-32 1.3E-36 168.9 10.8 92 17-108 18-109 (221)
3 KOG0080|consensus 100.0 1.9E-30 4.1E-35 158.2 11.4 93 16-108 6-98 (209)
4 KOG0092|consensus 100.0 1.5E-30 3.3E-35 162.2 8.6 90 19-108 3-92 (200)
5 KOG0095|consensus 100.0 1.8E-29 3.8E-34 152.6 10.0 94 15-108 1-94 (213)
6 KOG0078|consensus 100.0 2.2E-29 4.7E-34 159.1 10.7 94 15-108 6-99 (207)
7 KOG0098|consensus 100.0 1.3E-28 2.9E-33 153.1 9.8 91 18-108 3-93 (216)
8 KOG0086|consensus 100.0 1.3E-28 2.9E-33 149.3 7.5 94 15-108 3-96 (214)
9 KOG0079|consensus 99.9 3.2E-28 6.9E-33 146.8 6.1 92 17-108 4-95 (198)
10 KOG0087|consensus 99.9 1.6E-27 3.5E-32 150.6 9.4 94 14-107 7-100 (222)
11 KOG0093|consensus 99.9 3.3E-27 7.2E-32 142.2 9.9 102 7-108 7-108 (193)
12 cd04120 Rab12 Rab12 subfamily. 99.9 2.8E-27 6.1E-32 151.9 10.3 87 22-108 1-87 (202)
13 KOG0394|consensus 99.9 1.2E-27 2.7E-32 148.5 7.5 91 18-108 6-96 (210)
14 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 6.5E-27 1.4E-31 148.1 11.0 90 18-108 2-91 (182)
15 cd04121 Rab40 Rab40 subfamily. 99.9 8.5E-27 1.8E-31 148.4 11.1 91 18-108 3-93 (189)
16 cd01875 RhoG RhoG subfamily. 99.9 1.2E-26 2.5E-31 147.7 10.5 87 21-108 3-89 (191)
17 cd04131 Rnd Rnd subfamily. Th 99.9 2.1E-26 4.6E-31 145.3 11.0 87 21-108 1-87 (178)
18 cd04133 Rop_like Rop subfamily 99.9 2.4E-26 5.2E-31 144.8 10.6 86 22-108 2-87 (176)
19 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.3E-26 5E-31 145.5 10.3 87 22-108 1-87 (182)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 7E-26 1.5E-30 148.0 11.4 89 19-108 11-99 (232)
21 cd04102 RabL3 RabL3 (Rab-like3 99.9 4E-26 8.8E-31 146.5 10.1 87 22-108 1-92 (202)
22 KOG0091|consensus 99.9 4.6E-27 1E-31 143.8 4.8 91 18-108 5-96 (213)
23 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 6.6E-26 1.4E-30 147.3 9.8 86 22-108 2-87 (222)
24 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.3E-25 2.8E-30 141.2 10.4 86 22-108 2-87 (175)
25 cd04122 Rab14 Rab14 subfamily. 99.9 1.6E-25 3.4E-30 139.3 10.3 87 21-107 2-88 (166)
26 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.7E-25 3.7E-30 143.2 10.4 87 22-108 1-88 (201)
27 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2.3E-25 5.1E-30 139.4 10.6 85 23-107 2-86 (170)
28 PLN03071 GTP-binding nuclear p 99.9 3.9E-25 8.5E-30 143.5 11.1 90 19-108 11-100 (219)
29 PLN00023 GTP-binding protein; 99.9 3.2E-25 6.9E-30 149.8 10.8 94 15-108 15-121 (334)
30 cd04117 Rab15 Rab15 subfamily. 99.9 6.3E-25 1.4E-29 136.2 10.5 87 22-108 1-87 (161)
31 cd04119 RJL RJL (RabJ-Like) su 99.9 5.9E-25 1.3E-29 136.0 10.2 86 22-107 1-86 (168)
32 cd01867 Rab8_Rab10_Rab13_like 99.9 6.7E-25 1.5E-29 136.6 10.2 88 20-107 2-89 (167)
33 cd04116 Rab9 Rab9 subfamily. 99.9 1.3E-24 2.8E-29 135.4 11.5 89 19-107 3-91 (170)
34 cd01871 Rac1_like Rac1-like su 99.9 7.2E-25 1.6E-29 137.7 10.3 86 22-108 2-87 (174)
35 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 9.4E-25 2E-29 136.9 10.4 87 21-108 2-88 (172)
36 cd04110 Rab35 Rab35 subfamily. 99.9 1.1E-24 2.4E-29 139.4 10.8 89 19-107 4-92 (199)
37 PF00071 Ras: Ras family; Int 99.9 6.3E-25 1.4E-29 135.7 9.2 86 23-108 1-86 (162)
38 cd04127 Rab27A Rab27a subfamil 99.9 1.2E-24 2.5E-29 136.7 10.4 90 19-108 2-101 (180)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.4E-24 3.1E-29 134.7 10.5 87 21-107 2-88 (166)
40 cd04136 Rap_like Rap-like subf 99.9 9.2E-25 2E-29 134.9 9.4 85 22-107 2-86 (163)
41 cd01865 Rab3 Rab3 subfamily. 99.9 1.9E-24 4E-29 134.4 10.7 86 22-107 2-87 (165)
42 cd04109 Rab28 Rab28 subfamily. 99.9 1.2E-24 2.6E-29 140.7 10.1 87 22-108 1-88 (215)
43 cd04124 RabL2 RabL2 subfamily. 99.9 2.1E-24 4.5E-29 133.8 10.7 86 22-107 1-86 (161)
44 cd04176 Rap2 Rap2 subgroup. T 99.9 1.5E-24 3.2E-29 134.3 9.6 86 21-107 1-86 (163)
45 PLN03110 Rab GTPase; Provision 99.9 3.5E-24 7.5E-29 138.7 11.8 92 17-108 8-99 (216)
46 cd01892 Miro2 Miro2 subfamily. 99.9 2.9E-24 6.4E-29 134.3 10.2 89 19-107 2-91 (169)
47 cd04111 Rab39 Rab39 subfamily. 99.9 2.3E-24 5.1E-29 139.1 10.0 88 21-108 2-90 (211)
48 cd01866 Rab2 Rab2 subfamily. 99.9 5E-24 1.1E-28 132.9 10.7 89 19-107 2-90 (168)
49 cd04125 RabA_like RabA-like su 99.9 5E-24 1.1E-28 135.0 10.6 87 22-108 1-87 (188)
50 cd00877 Ran Ran (Ras-related n 99.9 5.8E-24 1.3E-28 132.6 10.6 86 22-107 1-86 (166)
51 cd01864 Rab19 Rab19 subfamily. 99.9 7.4E-24 1.6E-28 131.5 10.6 88 20-107 2-89 (165)
52 cd01868 Rab11_like Rab11-like. 99.9 7.5E-24 1.6E-28 131.3 10.5 88 20-107 2-89 (165)
53 cd04115 Rab33B_Rab33A Rab33B/R 99.9 9.2E-24 2E-28 131.9 10.9 88 21-108 2-90 (170)
54 PTZ00369 Ras-like protein; Pro 99.9 4.5E-24 9.8E-29 135.5 9.5 86 21-107 5-90 (189)
55 cd04106 Rab23_lke Rab23-like s 99.9 7.4E-24 1.6E-28 130.8 10.2 86 22-107 1-88 (162)
56 cd04134 Rho3 Rho3 subfamily. 99.9 5.6E-24 1.2E-28 135.1 9.8 85 23-108 2-86 (189)
57 cd04175 Rap1 Rap1 subgroup. T 99.9 5.6E-24 1.2E-28 131.9 9.3 85 22-107 2-86 (164)
58 cd04113 Rab4 Rab4 subfamily. 99.9 1.1E-23 2.4E-28 130.1 10.4 86 22-107 1-86 (161)
59 PLN03118 Rab family protein; P 99.9 1.7E-23 3.8E-28 134.9 11.5 93 14-107 7-99 (211)
60 cd04143 Rhes_like Rhes_like su 99.9 5.3E-24 1.1E-28 140.4 9.1 86 22-108 1-86 (247)
61 cd04118 Rab24 Rab24 subfamily. 99.9 1.5E-23 3.4E-28 133.1 10.7 86 22-107 1-87 (193)
62 PLN03108 Rab family protein; P 99.9 1.7E-23 3.8E-28 135.0 10.7 89 19-107 4-92 (210)
63 cd04144 Ras2 Ras2 subfamily. 99.9 6.8E-24 1.5E-28 134.8 8.6 84 23-107 1-84 (190)
64 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.3E-23 2.8E-28 129.3 9.5 85 22-107 2-86 (162)
65 cd04132 Rho4_like Rho4-like su 99.9 1.5E-23 3.2E-28 132.5 10.0 86 22-108 1-87 (187)
66 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.9E-23 4.2E-28 130.8 9.9 86 22-108 1-86 (173)
67 smart00176 RAN Ran (Ras-relate 99.9 1.3E-23 2.8E-28 134.8 9.3 82 27-108 1-82 (200)
68 KOG0088|consensus 99.9 1.1E-24 2.4E-29 132.9 3.9 94 15-108 7-100 (218)
69 KOG0097|consensus 99.9 1.6E-23 3.4E-28 126.1 8.5 91 17-107 7-97 (215)
70 KOG0393|consensus 99.9 2E-24 4.3E-29 136.8 4.6 88 20-108 3-91 (198)
71 cd01861 Rab6 Rab6 subfamily. 99.9 3.6E-23 7.9E-28 127.6 10.2 86 22-107 1-86 (161)
72 cd04112 Rab26 Rab26 subfamily. 99.9 3.9E-23 8.4E-28 131.4 10.1 86 22-107 1-87 (191)
73 cd04101 RabL4 RabL4 (Rab-like4 99.9 5.5E-23 1.2E-27 127.2 10.1 86 22-107 1-89 (164)
74 cd01860 Rab5_related Rab5-rela 99.9 7.2E-23 1.6E-27 126.5 10.3 87 21-107 1-87 (163)
75 smart00174 RHO Rho (Ras homolo 99.9 6.1E-23 1.3E-27 128.2 9.6 84 24-108 1-84 (174)
76 smart00173 RAS Ras subfamily o 99.9 6.3E-23 1.4E-27 127.0 9.0 85 22-107 1-85 (164)
77 cd04140 ARHI_like ARHI subfami 99.9 9.2E-23 2E-27 126.7 9.7 85 22-107 2-86 (165)
78 smart00175 RAB Rab subfamily o 99.9 1.5E-22 3.3E-27 125.0 10.4 86 22-107 1-86 (164)
79 KOG0081|consensus 99.9 6.6E-25 1.4E-29 134.0 -0.8 93 16-108 4-105 (219)
80 cd01862 Rab7 Rab7 subfamily. 99.9 2.2E-22 4.7E-27 125.2 10.5 85 22-106 1-85 (172)
81 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.7E-22 3.8E-27 124.8 9.8 86 21-107 2-87 (164)
82 PTZ00132 GTP-binding nuclear p 99.9 2.5E-22 5.3E-27 129.8 10.8 90 17-106 5-94 (215)
83 cd04135 Tc10 TC10 subfamily. 99.9 2.1E-22 4.5E-27 125.8 9.9 85 22-107 1-85 (174)
84 cd01863 Rab18 Rab18 subfamily. 99.9 2.6E-22 5.6E-27 123.9 10.1 86 22-107 1-86 (161)
85 cd04103 Centaurin_gamma Centau 99.9 2.5E-22 5.4E-27 124.5 9.7 80 22-108 1-80 (158)
86 KOG0083|consensus 99.9 4.2E-24 9E-29 127.3 1.5 84 25-108 1-85 (192)
87 cd04126 Rab20 Rab20 subfamily. 99.9 2.6E-22 5.5E-27 130.4 9.6 82 22-108 1-82 (220)
88 cd01870 RhoA_like RhoA-like su 99.9 2.8E-22 6.1E-27 125.3 9.5 85 22-107 2-86 (175)
89 cd04177 RSR1 RSR1 subgroup. R 99.9 3.1E-22 6.7E-27 124.7 9.6 85 22-107 2-86 (168)
90 cd04114 Rab30 Rab30 subfamily. 99.9 8.2E-22 1.8E-26 122.5 11.4 89 19-107 5-93 (169)
91 cd04142 RRP22 RRP22 subfamily. 99.9 3.2E-22 6.9E-27 128.1 9.5 87 22-108 1-95 (198)
92 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.3E-22 5E-27 124.6 8.0 81 22-107 1-81 (159)
93 PLN00223 ADP-ribosylation fact 99.9 4E-22 8.8E-27 126.0 9.2 84 19-107 15-98 (181)
94 smart00177 ARF ARF-like small 99.9 2.8E-22 6.1E-27 125.9 8.3 83 20-107 12-94 (175)
95 cd04123 Rab21 Rab21 subfamily. 99.9 9.7E-22 2.1E-26 120.9 10.1 86 22-107 1-86 (162)
96 cd01873 RhoBTB RhoBTB subfamil 99.9 5.3E-22 1.1E-26 126.9 9.2 86 21-108 2-102 (195)
97 cd04149 Arf6 Arf6 subfamily. 99.9 4E-22 8.7E-27 124.6 8.4 82 21-107 9-90 (168)
98 PTZ00133 ADP-ribosylation fact 99.9 6.3E-22 1.4E-26 125.2 8.2 82 21-107 17-98 (182)
99 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.3E-22 9.3E-27 124.0 7.1 81 23-107 1-81 (164)
100 COG1100 GTPase SAR1 and relate 99.9 2.7E-21 5.9E-26 124.7 10.5 85 22-106 6-90 (219)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.3E-21 2.8E-26 123.7 8.6 85 21-106 3-88 (183)
102 cd04148 RGK RGK subfamily. Th 99.9 1.8E-21 4E-26 126.5 9.3 85 22-108 1-87 (221)
103 cd00157 Rho Rho (Ras homology) 99.9 4.5E-21 9.8E-26 119.2 10.3 85 22-107 1-85 (171)
104 cd00154 Rab Rab family. Rab G 99.9 4.6E-21 1E-25 117.0 10.1 85 22-106 1-85 (159)
105 cd04146 RERG_RasL11_like RERG/ 99.9 1.8E-21 3.8E-26 120.8 8.0 84 23-107 1-85 (165)
106 KOG0395|consensus 99.9 1.3E-21 2.8E-26 125.1 6.7 88 20-108 2-89 (196)
107 cd01893 Miro1 Miro1 subfamily. 99.9 5.3E-21 1.2E-25 119.0 8.9 84 22-107 1-84 (166)
108 cd04147 Ras_dva Ras-dva subfam 99.9 4.3E-21 9.2E-26 122.7 8.6 83 23-106 1-83 (198)
109 cd04161 Arl2l1_Arl13_like Arl2 99.8 8.7E-21 1.9E-25 118.4 9.0 80 23-107 1-80 (167)
110 cd04158 ARD1 ARD1 subfamily. 99.8 1.1E-20 2.4E-25 118.0 8.5 80 23-107 1-80 (169)
111 cd04154 Arl2 Arl2 subfamily. 99.8 1.2E-20 2.7E-25 118.0 8.5 86 17-107 10-95 (173)
112 PF08477 Miro: Miro-like prote 99.8 1.3E-20 2.9E-25 111.3 8.1 85 23-107 1-87 (119)
113 cd04139 RalA_RalB RalA/RalB su 99.8 2.3E-20 5E-25 115.1 9.3 85 22-107 1-85 (164)
114 cd00876 Ras Ras family. The R 99.8 2.2E-20 4.8E-25 114.7 8.7 84 23-107 1-84 (160)
115 KOG4252|consensus 99.8 1.2E-22 2.6E-27 126.2 -1.6 96 13-108 12-107 (246)
116 cd04157 Arl6 Arl6 subfamily. 99.8 2.1E-20 4.6E-25 115.2 8.3 81 23-107 1-82 (162)
117 cd04137 RheB Rheb (Ras Homolog 99.8 3.8E-20 8.2E-25 116.3 9.0 85 22-107 2-86 (180)
118 cd04129 Rho2 Rho2 subfamily. 99.8 2.1E-19 4.6E-24 113.9 10.2 85 22-107 2-86 (187)
119 PF00025 Arf: ADP-ribosylation 99.8 1.8E-19 3.8E-24 113.4 9.5 84 18-106 11-94 (175)
120 KOG0073|consensus 99.8 8.5E-20 1.8E-24 111.8 7.7 85 17-106 12-96 (185)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 9.6E-20 2.1E-24 114.3 8.2 82 21-107 15-96 (174)
122 smart00178 SAR Sar1p-like memb 99.8 2.3E-19 4.9E-24 113.6 8.9 84 19-107 15-98 (184)
123 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2E-19 4.3E-24 110.9 8.2 81 23-107 1-81 (160)
124 cd04159 Arl10_like Arl10-like 99.8 2.1E-19 4.5E-24 109.8 8.2 80 23-106 1-80 (159)
125 cd04151 Arl1 Arl1 subfamily. 99.8 8.6E-20 1.9E-24 112.6 6.5 79 23-106 1-79 (158)
126 cd00879 Sar1 Sar1 subfamily. 99.8 3.9E-19 8.4E-24 112.6 9.1 84 19-107 17-100 (190)
127 KOG0070|consensus 99.8 8.9E-20 1.9E-24 113.5 5.4 84 18-106 14-97 (181)
128 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.4E-19 7.3E-24 109.7 7.5 79 23-106 1-79 (158)
129 TIGR00231 small_GTP small GTP- 99.8 3E-18 6.5E-23 104.1 10.4 85 22-106 2-86 (161)
130 KOG1673|consensus 99.8 5.5E-19 1.2E-23 107.7 6.1 93 15-107 14-106 (205)
131 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.2E-18 2.6E-23 108.1 7.8 80 23-106 1-86 (167)
132 cd01891 TypA_BipA TypA (tyrosi 99.8 1.3E-18 2.7E-23 110.9 7.0 83 23-105 4-100 (194)
133 cd01890 LepA LepA subfamily. 99.8 3.2E-18 6.9E-23 107.3 8.4 84 23-106 2-103 (179)
134 cd04171 SelB SelB subfamily. 99.8 5.1E-18 1.1E-22 104.6 8.7 82 23-105 2-86 (164)
135 cd04155 Arl3 Arl3 subfamily. 99.8 1.1E-17 2.3E-22 104.4 9.0 82 20-106 13-94 (173)
136 KOG0071|consensus 99.7 1.1E-17 2.5E-22 100.4 7.6 82 20-106 16-97 (180)
137 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 4.8E-17 1E-21 100.7 8.7 83 23-105 2-85 (168)
138 cd04105 SR_beta Signal recogni 99.7 5.7E-17 1.2E-21 104.2 8.7 83 23-106 2-85 (203)
139 TIGR02528 EutP ethanolamine ut 99.7 2.8E-17 6E-22 99.7 6.8 71 23-108 2-77 (142)
140 KOG0074|consensus 99.7 9.5E-17 2.1E-21 96.6 8.3 84 18-105 14-97 (185)
141 KOG0096|consensus 99.7 8.2E-17 1.8E-21 100.8 7.4 88 19-106 8-95 (216)
142 KOG0075|consensus 99.7 3E-17 6.6E-22 99.2 3.4 83 21-107 20-102 (186)
143 PRK04213 GTP-binding protein; 99.6 1.1E-15 2.3E-20 97.7 8.0 80 19-104 7-101 (201)
144 cd00882 Ras_like_GTPase Ras-li 99.6 1.9E-15 4.1E-20 90.7 8.5 80 26-106 1-81 (157)
145 KOG4423|consensus 99.6 4.5E-19 9.8E-24 110.8 -7.5 92 15-106 19-111 (229)
146 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.7E-15 8.1E-20 105.3 10.6 86 19-107 201-296 (442)
147 cd01879 FeoB Ferrous iron tran 99.6 1.8E-15 3.9E-20 92.8 7.8 79 26-106 1-87 (158)
148 cd01878 HflX HflX subfamily. 99.6 2.4E-15 5.2E-20 96.3 8.6 87 19-107 39-134 (204)
149 TIGR03598 GTPase_YsxC ribosome 99.6 4.1E-15 8.8E-20 93.7 8.9 85 18-105 15-112 (179)
150 PRK03003 GTP-binding protein D 99.6 4.2E-15 9.2E-20 105.9 9.8 84 21-106 38-130 (472)
151 cd01898 Obg Obg subfamily. Th 99.6 2.8E-15 6.1E-20 93.0 7.8 83 23-106 2-91 (170)
152 PTZ00099 rab6; Provisional 99.6 3.1E-15 6.6E-20 94.3 7.2 64 44-107 3-66 (176)
153 TIGR01393 lepA GTP-binding pro 99.6 4.1E-15 8.9E-20 108.3 8.8 85 22-106 4-106 (595)
154 PRK00454 engB GTP-binding prot 99.6 8.4E-15 1.8E-19 93.0 8.7 85 18-105 21-118 (196)
155 cd01897 NOG NOG1 is a nucleola 99.6 1.1E-14 2.3E-19 90.4 8.5 81 23-107 2-93 (168)
156 TIGR00487 IF-2 translation ini 99.6 1.3E-14 2.7E-19 105.6 9.7 86 19-105 85-170 (587)
157 TIGR03156 GTP_HflX GTP-binding 99.6 9.3E-15 2E-19 100.8 8.5 86 20-107 188-282 (351)
158 cd04164 trmE TrmE (MnmE, ThdF, 99.6 3.6E-14 7.8E-19 86.6 10.2 84 22-107 2-94 (157)
159 cd01850 CDC_Septin CDC/Septin. 99.6 5.1E-14 1.1E-18 94.4 11.5 62 19-80 2-73 (276)
160 cd00881 GTP_translation_factor 99.6 1.2E-14 2.5E-19 91.4 7.8 81 23-105 1-97 (189)
161 PRK00093 GTP-binding protein D 99.6 1.9E-14 4.1E-19 101.5 8.9 82 22-105 2-92 (435)
162 cd01889 SelB_euk SelB subfamil 99.6 1.2E-14 2.7E-19 92.4 7.2 84 22-105 1-103 (192)
163 PRK05291 trmE tRNA modificatio 99.6 2.7E-14 5.9E-19 101.2 9.7 86 20-107 214-308 (449)
164 PRK03003 GTP-binding protein D 99.6 2.8E-14 6.1E-19 101.7 9.7 85 20-106 210-306 (472)
165 cd04167 Snu114p Snu114p subfam 99.6 1.8E-14 3.9E-19 93.1 7.5 84 23-106 2-107 (213)
166 PRK15494 era GTPase Era; Provi 99.6 4.8E-14 1E-18 96.9 9.7 83 19-105 50-143 (339)
167 CHL00189 infB translation init 99.5 5.6E-14 1.2E-18 104.0 9.3 87 19-105 242-330 (742)
168 PRK10218 GTP-binding protein; 99.5 6.4E-14 1.4E-18 102.2 9.3 85 21-105 5-103 (607)
169 KOG0072|consensus 99.5 2.6E-15 5.6E-20 90.7 1.4 84 19-107 16-99 (182)
170 PRK05306 infB translation init 99.5 1E-13 2.2E-18 103.3 10.0 86 18-105 287-372 (787)
171 TIGR00475 selB selenocysteine- 99.5 1.2E-13 2.6E-18 100.5 9.7 82 22-105 1-85 (581)
172 KOG0076|consensus 99.5 2.1E-14 4.5E-19 89.0 4.9 82 21-106 17-105 (197)
173 cd01894 EngA1 EngA1 subfamily. 99.5 1.2E-13 2.6E-18 84.4 8.1 79 25-106 1-89 (157)
174 TIGR03594 GTPase_EngA ribosome 99.5 1.5E-13 3.4E-18 96.7 8.8 81 23-105 1-90 (429)
175 TIGR00436 era GTP-binding prot 99.5 1.3E-13 2.8E-18 92.1 7.9 82 23-107 2-93 (270)
176 cd04169 RF3 RF3 subfamily. Pe 99.5 2.1E-13 4.6E-18 91.0 8.4 84 22-105 3-106 (267)
177 cd01896 DRG The developmentall 99.5 3.5E-13 7.6E-18 88.4 9.3 81 23-106 2-90 (233)
178 cd01895 EngA2 EngA2 subfamily. 99.5 3.3E-13 7.2E-18 83.4 8.7 84 21-106 2-97 (174)
179 PRK09518 bifunctional cytidyla 99.5 2.2E-13 4.8E-18 101.2 9.2 87 17-105 271-366 (712)
180 cd04168 TetM_like Tet(M)-like 99.5 8.9E-14 1.9E-18 91.4 6.4 83 23-105 1-99 (237)
181 cd04163 Era Era subfamily. Er 99.5 3.8E-13 8.2E-18 82.4 8.7 85 21-106 3-95 (168)
182 TIGR00491 aIF-2 translation in 99.5 1.6E-13 3.5E-18 99.8 8.1 83 23-105 6-104 (590)
183 TIGR03594 GTPase_EngA ribosome 99.5 8.7E-13 1.9E-17 92.9 11.1 86 19-106 170-267 (429)
184 PRK11058 GTPase HflX; Provisio 99.5 3.2E-13 6.9E-18 95.2 8.1 85 22-107 198-290 (426)
185 cd01881 Obg_like The Obg-like 99.5 2.9E-13 6.3E-18 84.2 7.0 79 26-106 1-87 (176)
186 PRK05433 GTP-binding protein L 99.5 4.2E-13 9.2E-18 98.0 8.5 86 20-105 6-109 (600)
187 PRK15467 ethanolamine utilizat 99.4 3.2E-13 7E-18 83.7 6.3 71 23-107 3-78 (158)
188 cd01876 YihA_EngB The YihA (En 99.4 1E-12 2.2E-17 80.7 8.3 81 23-106 1-94 (170)
189 KOG3883|consensus 99.4 5.9E-13 1.3E-17 81.3 6.9 88 20-108 8-99 (198)
190 PF02421 FeoB_N: Ferrous iron 99.4 1.8E-12 3.8E-17 80.2 9.0 83 22-106 1-91 (156)
191 cd01899 Ygr210 Ygr210 subfamil 99.4 8.4E-13 1.8E-17 90.0 8.2 82 24-105 1-111 (318)
192 PRK09518 bifunctional cytidyla 99.4 1.3E-12 2.9E-17 97.1 9.6 84 20-106 449-545 (712)
193 TIGR00483 EF-1_alpha translati 99.4 9E-13 2E-17 93.0 8.3 87 18-106 4-121 (426)
194 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 6.8E-13 1.5E-17 86.8 7.1 80 23-105 1-88 (232)
195 PF01926 MMR_HSR1: 50S ribosom 99.4 3.1E-12 6.7E-17 75.3 9.2 79 23-105 1-91 (116)
196 PRK04004 translation initiatio 99.4 1.9E-12 4.2E-17 94.4 9.4 84 22-105 7-106 (586)
197 PRK00089 era GTPase Era; Revie 99.4 2.5E-12 5.4E-17 86.6 8.9 82 21-105 5-96 (292)
198 cd01885 EF2 EF2 (for archaea a 99.4 1.1E-12 2.4E-17 85.4 6.8 83 23-105 2-108 (222)
199 cd04166 CysN_ATPS CysN_ATPS su 99.4 1.9E-12 4.1E-17 83.5 7.8 81 23-105 1-112 (208)
200 cd04170 EF-G_bact Elongation f 99.4 1.2E-12 2.6E-17 87.3 7.0 81 23-105 1-99 (268)
201 TIGR01394 TypA_BipA GTP-bindin 99.4 1.5E-12 3.1E-17 95.1 7.6 83 23-105 3-99 (594)
202 PRK00093 GTP-binding protein D 99.4 7.8E-12 1.7E-16 88.3 10.5 86 19-106 171-268 (435)
203 PRK12299 obgE GTPase CgtA; Rev 99.4 5.8E-12 1.3E-16 86.5 9.2 84 22-107 159-250 (335)
204 cd00880 Era_like Era (E. coli 99.4 4.1E-12 8.8E-17 77.0 7.6 81 26-107 1-89 (163)
205 PRK12317 elongation factor 1-a 99.4 3.4E-12 7.4E-17 90.0 8.0 87 19-105 4-119 (425)
206 PRK09554 feoB ferrous iron tra 99.4 6E-12 1.3E-16 94.1 9.7 84 21-106 3-98 (772)
207 TIGR02729 Obg_CgtA Obg family 99.4 5.1E-12 1.1E-16 86.6 8.6 83 22-106 158-248 (329)
208 cd04104 p47_IIGP_like p47 (47- 99.3 4.8E-12 1E-16 81.0 7.5 82 21-102 1-89 (197)
209 TIGR00490 aEF-2 translation el 99.3 2.9E-12 6.4E-17 95.4 7.3 89 17-105 15-121 (720)
210 KOG1707|consensus 99.3 2.2E-12 4.7E-17 92.3 6.0 87 19-107 7-93 (625)
211 TIGR00437 feoB ferrous iron tr 99.3 1E-11 2.2E-16 90.8 9.3 77 28-106 1-85 (591)
212 KOG0077|consensus 99.3 2E-12 4.3E-17 79.8 4.5 82 20-106 19-100 (193)
213 cd01888 eIF2_gamma eIF2-gamma 99.3 8.3E-12 1.8E-16 80.2 7.6 84 22-105 1-118 (203)
214 PRK00741 prfC peptide chain re 99.3 4.8E-12 1.1E-16 91.3 7.0 87 19-105 8-114 (526)
215 TIGR00503 prfC peptide chain r 99.3 1.1E-11 2.3E-16 89.5 8.5 87 19-105 9-115 (527)
216 PRK13351 elongation factor G; 99.3 4.8E-12 1E-16 93.8 6.7 82 20-105 7-108 (687)
217 PRK09602 translation-associate 99.3 1.9E-11 4.1E-16 85.6 9.3 83 22-104 2-113 (396)
218 PRK12297 obgE GTPase CgtA; Rev 99.3 4.6E-11 1E-15 84.2 10.6 82 23-106 160-249 (424)
219 cd01886 EF-G Elongation factor 99.3 1.5E-11 3.2E-16 82.4 6.9 81 23-105 1-99 (270)
220 PRK12296 obgE GTPase CgtA; Rev 99.3 4.9E-11 1.1E-15 85.4 8.8 82 21-105 159-248 (500)
221 TIGR00991 3a0901s02IAP34 GTP-b 99.2 6.5E-11 1.4E-15 80.2 8.5 84 18-104 35-129 (313)
222 COG0486 ThdF Predicted GTPase 99.2 9E-11 2E-15 82.5 9.4 85 19-105 215-308 (454)
223 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 4.5E-11 9.8E-16 76.3 7.2 82 22-105 1-95 (196)
224 KOG1423|consensus 99.2 1.3E-10 2.8E-15 78.3 9.5 90 15-105 66-167 (379)
225 cd01884 EF_Tu EF-Tu subfamily. 99.2 7.8E-11 1.7E-15 75.4 8.0 85 21-105 2-100 (195)
226 COG2229 Predicted GTPase [Gene 99.2 8.9E-11 1.9E-15 73.6 7.9 85 18-105 7-103 (187)
227 cd01883 EF1_alpha Eukaryotic e 99.2 8.7E-11 1.9E-15 76.3 8.1 81 23-105 1-112 (219)
228 smart00010 small_GTPase Small 99.2 2.3E-11 4.9E-16 71.7 4.6 34 22-55 1-35 (124)
229 PF00009 GTP_EFTU: Elongation 99.2 5.5E-11 1.2E-15 75.5 6.3 85 21-105 3-105 (188)
230 TIGR00485 EF-Tu translation el 99.2 1.1E-10 2.3E-15 81.8 8.3 88 18-105 9-110 (394)
231 PRK12735 elongation factor Tu; 99.2 1.6E-10 3.5E-15 81.0 9.0 88 18-105 9-110 (396)
232 PRK10512 selenocysteinyl-tRNA- 99.2 2.4E-10 5.3E-15 83.9 9.6 82 23-105 2-86 (614)
233 COG1159 Era GTPase [General fu 99.2 1.2E-10 2.5E-15 78.0 6.8 82 21-105 6-97 (298)
234 cd01853 Toc34_like Toc34-like 99.2 3.1E-10 6.7E-15 75.2 8.7 86 16-104 26-125 (249)
235 PLN03126 Elongation factor Tu; 99.2 2.4E-10 5.2E-15 81.8 8.7 87 18-104 78-178 (478)
236 TIGR00484 EF-G translation elo 99.2 1.3E-10 2.8E-15 86.3 7.5 85 19-105 8-110 (689)
237 PF09439 SRPRB: Signal recogni 99.1 3E-11 6.6E-16 76.3 3.1 78 23-104 5-86 (181)
238 COG1160 Predicted GTPases [Gen 99.1 2E-10 4.3E-15 80.6 7.3 81 22-104 4-94 (444)
239 PF04548 AIG1: AIG1 family; I 99.1 1.7E-10 3.8E-15 74.7 6.5 81 22-104 1-94 (212)
240 COG3596 Predicted GTPase [Gene 99.1 6.4E-11 1.4E-15 78.6 4.4 85 19-105 37-129 (296)
241 PRK12736 elongation factor Tu; 99.1 4.2E-10 9.1E-15 78.9 8.4 88 18-105 9-110 (394)
242 TIGR03680 eif2g_arch translati 99.1 2.9E-10 6.2E-15 80.0 7.4 86 20-105 3-115 (406)
243 cd00066 G-alpha G protein alph 99.1 4.8E-10 1.1E-14 76.6 8.3 39 69-107 160-198 (317)
244 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 2.7E-10 5.9E-15 69.3 6.3 54 23-80 85-138 (141)
245 PTZ00258 GTP-binding protein; 99.1 7.4E-10 1.6E-14 77.4 9.0 88 17-104 17-126 (390)
246 PRK04000 translation initiatio 99.1 3.5E-10 7.5E-15 79.7 7.3 88 18-105 6-120 (411)
247 PRK12298 obgE GTPase CgtA; Rev 99.1 6.2E-10 1.3E-14 77.9 8.3 80 23-104 161-248 (390)
248 PRK05124 cysN sulfate adenylyl 99.1 8.5E-10 1.9E-14 79.0 8.4 87 16-104 22-141 (474)
249 PF10662 PduV-EutP: Ethanolami 99.1 8.9E-10 1.9E-14 67.1 7.0 71 23-107 3-77 (143)
250 CHL00071 tufA elongation facto 99.1 1.4E-09 3.1E-14 76.6 9.1 86 18-105 9-110 (409)
251 smart00275 G_alpha G protein a 99.0 1.1E-09 2.4E-14 75.5 7.7 38 70-107 184-221 (342)
252 PF00735 Septin: Septin; Inte 99.0 2.7E-09 5.9E-14 71.8 9.0 60 20-79 3-72 (281)
253 TIGR02034 CysN sulfate adenyly 99.0 1E-09 2.3E-14 77.2 7.0 81 22-104 1-114 (406)
254 PRK00049 elongation factor Tu; 99.0 3E-09 6.5E-14 74.7 8.9 87 19-105 10-110 (396)
255 cd01900 YchF YchF subfamily. 99.0 1.4E-09 3E-14 72.9 6.9 81 24-104 1-103 (274)
256 PRK12739 elongation factor G; 99.0 1.4E-09 2.9E-14 81.0 7.1 85 19-105 6-108 (691)
257 PRK09601 GTP-binding protein Y 99.0 4.4E-09 9.6E-14 72.9 9.1 83 22-104 3-107 (364)
258 PLN00043 elongation factor 1-a 99.0 5.2E-09 1.1E-13 74.5 9.2 87 19-105 5-120 (447)
259 cd01859 MJ1464 MJ1464. This f 99.0 2.9E-09 6.3E-14 65.6 6.9 56 20-79 100-155 (156)
260 COG1163 DRG Predicted GTPase [ 99.0 3.2E-09 6.8E-14 72.1 7.4 85 19-106 61-153 (365)
261 cd01856 YlqF YlqF. Proteins o 99.0 2.7E-09 5.9E-14 66.8 6.8 58 19-80 113-170 (171)
262 PTZ00141 elongation factor 1- 99.0 7.3E-09 1.6E-13 73.7 9.5 87 19-105 5-120 (446)
263 PRK05506 bifunctional sulfate 99.0 4.1E-09 8.9E-14 77.8 8.0 85 18-104 21-138 (632)
264 COG0218 Predicted GTPase [Gene 98.9 6E-09 1.3E-13 66.5 7.4 82 19-103 22-116 (200)
265 KOG1191|consensus 98.9 3.5E-09 7.6E-14 75.0 6.8 81 20-103 267-358 (531)
266 cd04165 GTPBP1_like GTPBP1-lik 98.9 9.4E-09 2E-13 67.2 8.4 81 23-105 1-121 (224)
267 COG1160 Predicted GTPases [Gen 98.9 3.1E-09 6.7E-14 74.7 6.2 84 20-105 177-272 (444)
268 TIGR00993 3a0901s04IAP86 chlor 98.9 2.1E-08 4.5E-13 73.9 10.5 84 18-105 115-213 (763)
269 COG0370 FeoB Fe2+ transport sy 98.9 1.1E-08 2.4E-13 74.8 9.1 84 21-106 3-94 (653)
270 PLN03127 Elongation factor Tu; 98.9 1.2E-08 2.6E-13 72.7 9.1 86 18-105 58-159 (447)
271 COG1084 Predicted GTPase [Gene 98.9 1.2E-08 2.6E-13 69.3 8.4 85 19-105 166-259 (346)
272 cd01858 NGP_1 NGP-1. Autoanti 98.9 9.1E-09 2E-13 63.6 7.1 56 20-79 101-156 (157)
273 cd04178 Nucleostemin_like Nucl 98.9 8.5E-09 1.8E-13 64.9 6.6 56 20-79 116-171 (172)
274 KOG1707|consensus 98.9 1.2E-08 2.7E-13 73.5 7.8 93 14-108 418-510 (625)
275 PF05049 IIGP: Interferon-indu 98.9 4.7E-09 1E-13 72.9 5.5 86 19-105 33-126 (376)
276 PRK00007 elongation factor G; 98.9 8.9E-09 1.9E-13 76.8 7.2 84 19-104 8-109 (693)
277 KOG0090|consensus 98.9 3.9E-09 8.3E-14 67.9 4.3 77 23-104 40-119 (238)
278 PRK09563 rbgA GTPase YlqF; Rev 98.8 2.5E-08 5.4E-13 67.4 7.8 59 19-81 119-177 (287)
279 KOG3886|consensus 98.8 1.8E-09 3.9E-14 70.3 2.1 82 22-106 5-94 (295)
280 TIGR03596 GTPase_YlqF ribosome 98.8 1.9E-08 4.1E-13 67.6 7.1 57 20-80 117-173 (276)
281 PLN00116 translation elongatio 98.8 2.4E-08 5.1E-13 75.9 7.9 90 16-105 14-133 (843)
282 PRK12740 elongation factor G; 98.8 1.5E-08 3.3E-13 75.3 6.6 77 27-105 1-95 (668)
283 cd01855 YqeH YqeH. YqeH is an 98.8 1.5E-08 3.2E-13 64.4 5.8 55 22-79 128-189 (190)
284 PTZ00416 elongation factor 2; 98.8 3.3E-08 7.1E-13 75.1 8.2 88 18-105 16-127 (836)
285 KOG0082|consensus 98.7 4E-08 8.7E-13 67.7 6.7 52 52-107 181-232 (354)
286 PRK07560 elongation factor EF- 98.7 2.6E-08 5.5E-13 74.8 6.1 88 17-104 16-121 (731)
287 COG1161 Predicted GTPases [Gen 98.7 4.7E-08 1E-12 67.0 6.6 58 19-80 130-187 (322)
288 COG5019 CDC3 Septin family pro 98.7 1E-07 2.2E-12 65.6 7.3 63 18-80 20-92 (373)
289 PF00350 Dynamin_N: Dynamin fa 98.7 2.8E-07 6.1E-12 57.1 8.2 34 72-105 103-140 (168)
290 KOG1547|consensus 98.6 3.9E-07 8.5E-12 60.1 8.3 62 19-80 44-114 (336)
291 KOG2655|consensus 98.6 2E-07 4.4E-12 64.4 7.1 63 18-80 18-89 (366)
292 COG5256 TEF1 Translation elong 98.5 8.6E-07 1.9E-11 62.0 8.4 89 18-106 4-121 (428)
293 KOG0705|consensus 98.5 1.3E-07 2.8E-12 68.3 3.9 82 20-108 29-110 (749)
294 TIGR00092 GTP-binding protein 98.5 9.7E-07 2.1E-11 61.5 8.0 83 22-105 3-109 (368)
295 cd01849 YlqF_related_GTPase Yl 98.5 6.7E-07 1.5E-11 55.1 6.5 55 20-79 99-154 (155)
296 PF03193 DUF258: Protein of un 98.5 2.9E-07 6.2E-12 57.3 4.8 58 23-83 37-100 (161)
297 cd01882 BMS1 Bms1. Bms1 is an 98.5 1E-06 2.3E-11 57.6 7.5 78 20-105 38-115 (225)
298 COG0012 Predicted GTPase, prob 98.5 1.6E-06 3.5E-11 60.1 8.5 85 22-106 3-110 (372)
299 PF05783 DLIC: Dynein light in 98.5 8E-07 1.7E-11 63.7 7.2 82 22-106 26-113 (472)
300 COG1618 Predicted nucleotide k 98.4 1.7E-06 3.8E-11 53.7 7.3 56 20-78 4-59 (179)
301 PRK12288 GTPase RsgA; Reviewed 98.4 8.9E-07 1.9E-11 61.4 5.9 58 24-84 208-271 (347)
302 COG0532 InfB Translation initi 98.4 2E-06 4.4E-11 61.7 7.6 84 22-105 6-90 (509)
303 TIGR03597 GTPase_YqeH ribosome 98.4 1.5E-06 3.2E-11 60.6 6.6 57 22-81 155-215 (360)
304 PRK13796 GTPase YqeH; Provisio 98.4 1E-06 2.2E-11 61.5 5.7 57 22-81 161-221 (365)
305 PRK12289 GTPase RsgA; Reviewed 98.4 9.9E-07 2.2E-11 61.2 5.5 58 23-84 174-238 (352)
306 cd01851 GBP Guanylate-binding 98.3 2.2E-06 4.7E-11 56.1 6.6 82 21-103 7-101 (224)
307 KOG1486|consensus 98.3 2.8E-06 6E-11 56.5 7.0 82 21-105 62-151 (364)
308 TIGR00157 ribosome small subun 98.3 2E-06 4.4E-11 56.9 5.9 23 23-45 122-144 (245)
309 KOG1491|consensus 98.3 5.5E-06 1.2E-10 56.9 7.9 89 16-104 15-125 (391)
310 PF03266 NTPase_1: NTPase; In 98.3 1.8E-06 3.8E-11 54.2 5.1 52 23-77 1-52 (168)
311 PRK14845 translation initiatio 98.3 2.5E-06 5.4E-11 66.1 6.5 74 32-105 472-561 (1049)
312 KOG3905|consensus 98.3 3.9E-06 8.4E-11 57.7 6.4 82 22-106 53-140 (473)
313 COG2262 HflX GTPases [General 98.2 6.3E-06 1.4E-10 57.7 7.2 88 19-107 190-285 (411)
314 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.7E-06 1E-10 56.4 5.8 60 22-84 162-227 (287)
315 COG1162 Predicted GTPases [Gen 98.2 3.6E-06 7.9E-11 57.0 5.1 59 23-84 166-230 (301)
316 COG4917 EutP Ethanolamine util 98.2 3.2E-06 7E-11 50.5 4.2 72 23-107 3-78 (148)
317 KOG3859|consensus 98.2 5.6E-06 1.2E-10 55.8 5.7 62 18-79 39-104 (406)
318 KOG0468|consensus 98.2 1.3E-05 2.8E-10 59.5 7.8 90 15-104 122-231 (971)
319 COG0480 FusA Translation elong 98.2 7.8E-06 1.7E-10 61.2 6.9 87 18-104 7-110 (697)
320 KOG1424|consensus 98.1 5.6E-06 1.2E-10 59.5 5.3 56 21-80 314-369 (562)
321 PRK00098 GTPase RsgA; Reviewed 98.1 8.4E-06 1.8E-10 55.5 5.8 23 23-45 166-188 (298)
322 KOG1489|consensus 98.1 1.8E-05 3.9E-10 54.1 6.5 82 23-106 198-287 (366)
323 KOG0458|consensus 98.1 2.6E-05 5.7E-10 56.7 7.6 88 17-104 173-289 (603)
324 KOG0462|consensus 98.0 1.4E-05 3E-10 58.0 5.8 86 19-104 58-159 (650)
325 smart00053 DYNc Dynamin, GTPas 98.0 3.9E-05 8.5E-10 50.8 7.5 25 21-45 26-50 (240)
326 KOG3887|consensus 98.0 7.1E-06 1.5E-10 54.3 3.9 81 21-104 27-112 (347)
327 KOG1145|consensus 98.0 2.9E-05 6.2E-10 56.5 7.1 83 19-104 151-235 (683)
328 COG1217 TypA Predicted membran 98.0 2.1E-05 4.5E-10 56.3 6.1 83 22-104 6-102 (603)
329 COG4108 PrfC Peptide chain rel 98.0 1.5E-05 3.3E-10 56.5 5.3 82 22-103 13-114 (528)
330 PF13207 AAA_17: AAA domain; P 97.9 1.2E-05 2.6E-10 47.3 3.1 22 23-44 1-22 (121)
331 PTZ00327 eukaryotic translatio 97.9 4.2E-05 9.1E-10 55.0 6.3 88 18-105 31-152 (460)
332 PRK08118 topology modulation p 97.9 1.5E-05 3.3E-10 49.9 3.2 22 23-44 3-24 (167)
333 KOG0461|consensus 97.8 0.00017 3.7E-09 50.2 8.1 85 17-104 3-104 (522)
334 COG0563 Adk Adenylate kinase a 97.8 1.9E-05 4.2E-10 50.0 3.1 22 23-44 2-23 (178)
335 PRK07261 topology modulation p 97.8 2.1E-05 4.6E-10 49.4 3.2 22 23-44 2-23 (171)
336 COG0481 LepA Membrane GTPase L 97.8 0.0001 2.2E-09 53.0 6.4 85 20-104 8-110 (603)
337 PF13671 AAA_33: AAA domain; P 97.8 2.5E-05 5.4E-10 47.1 3.0 19 24-42 2-20 (143)
338 KOG2484|consensus 97.7 4.5E-05 9.7E-10 53.5 3.5 58 19-80 250-307 (435)
339 PF13521 AAA_28: AAA domain; P 97.7 2.9E-05 6.2E-10 48.1 2.3 22 23-44 1-22 (163)
340 KOG1144|consensus 97.7 9.7E-05 2.1E-09 55.6 5.2 80 21-104 475-574 (1064)
341 KOG0464|consensus 97.7 4.5E-05 9.8E-10 54.2 3.3 87 18-104 34-136 (753)
342 PF00004 AAA: ATPase family as 97.7 4.9E-05 1.1E-09 44.9 3.0 21 24-44 1-21 (132)
343 PRK06217 hypothetical protein; 97.6 6E-05 1.3E-09 47.7 3.2 23 22-44 2-24 (183)
344 KOG2485|consensus 97.6 0.00016 3.4E-09 49.4 5.2 62 18-80 140-206 (335)
345 smart00382 AAA ATPases associa 97.6 7.4E-05 1.6E-09 43.9 3.3 25 23-47 4-28 (148)
346 PF13238 AAA_18: AAA domain; P 97.6 6.3E-05 1.4E-09 44.3 2.9 21 24-44 1-21 (129)
347 PF07728 AAA_5: AAA domain (dy 97.6 6.3E-05 1.4E-09 45.3 2.8 21 23-43 1-21 (139)
348 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00046 9.9E-09 41.8 6.5 22 23-44 24-45 (133)
349 cd02019 NK Nucleoside/nucleoti 97.6 8.8E-05 1.9E-09 39.7 3.0 21 24-44 2-22 (69)
350 COG0536 Obg Predicted GTPase [ 97.6 0.00032 6.9E-09 48.5 6.1 81 24-106 162-250 (369)
351 PF13555 AAA_29: P-loop contai 97.6 0.00011 2.4E-09 38.7 3.0 21 23-43 25-45 (62)
352 PRK03839 putative kinase; Prov 97.5 9.3E-05 2E-09 46.6 3.2 22 23-44 2-23 (180)
353 COG1116 TauB ABC-type nitrate/ 97.5 8.4E-05 1.8E-09 49.2 3.0 21 24-44 32-52 (248)
354 PRK10078 ribose 1,5-bisphospho 97.5 9.9E-05 2.1E-09 46.8 3.3 22 23-44 4-25 (186)
355 TIGR02322 phosphon_PhnN phosph 97.5 9E-05 2E-09 46.5 3.0 22 23-44 3-24 (179)
356 TIGR00101 ureG urease accessor 97.5 0.0001 2.2E-09 47.4 3.3 23 22-44 2-24 (199)
357 KOG0410|consensus 97.5 0.00026 5.6E-09 48.8 5.3 84 22-107 179-271 (410)
358 PRK14738 gmk guanylate kinase; 97.5 0.00016 3.4E-09 46.7 4.1 27 18-44 10-36 (206)
359 PRK14530 adenylate kinase; Pro 97.5 9.9E-05 2.1E-09 47.8 3.2 21 23-43 5-25 (215)
360 TIGR02836 spore_IV_A stage IV 97.5 0.00034 7.3E-09 49.9 5.9 25 20-44 16-40 (492)
361 PF00005 ABC_tran: ABC transpo 97.5 0.00011 2.3E-09 44.1 3.0 23 23-45 13-35 (137)
362 PF13191 AAA_16: AAA ATPase do 97.5 8.9E-05 1.9E-09 46.3 2.7 22 22-43 25-46 (185)
363 COG5192 BMS1 GTP-binding prote 97.5 0.00038 8.2E-09 51.4 6.1 78 18-103 66-143 (1077)
364 cd00071 GMPK Guanosine monopho 97.5 0.00011 2.5E-09 44.5 3.0 21 24-44 2-22 (137)
365 PF04665 Pox_A32: Poxvirus A32 97.5 0.00012 2.6E-09 48.5 3.2 26 19-44 11-36 (241)
366 KOG1954|consensus 97.5 0.0011 2.3E-08 46.8 7.8 83 19-103 56-191 (532)
367 TIGR03263 guanyl_kin guanylate 97.5 0.00012 2.7E-09 45.9 3.1 22 23-44 3-24 (180)
368 PF13173 AAA_14: AAA domain 97.5 0.00011 2.4E-09 43.9 2.7 24 23-46 4-27 (128)
369 PF13401 AAA_22: AAA domain; P 97.5 0.00012 2.5E-09 43.4 2.8 23 23-45 6-28 (131)
370 PRK14532 adenylate kinase; Pro 97.5 0.00013 2.8E-09 46.2 3.1 21 23-43 2-22 (188)
371 PRK13949 shikimate kinase; Pro 97.5 0.00014 3E-09 45.6 3.2 21 23-43 3-23 (169)
372 PF05729 NACHT: NACHT domain 97.5 0.00012 2.6E-09 44.8 2.9 21 24-44 3-23 (166)
373 KOG4273|consensus 97.4 0.00062 1.3E-08 45.6 6.2 85 23-107 6-92 (418)
374 COG1126 GlnQ ABC-type polar am 97.4 0.00013 2.8E-09 47.6 2.9 23 23-45 30-52 (240)
375 COG3839 MalK ABC-type sugar tr 97.4 0.00014 3E-09 50.3 3.0 22 24-45 32-53 (338)
376 PRK10646 ADP-binding protein; 97.4 0.0019 4.1E-08 40.0 7.7 22 23-44 30-51 (153)
377 KOG3347|consensus 97.4 0.00014 3E-09 44.9 2.6 25 19-43 5-29 (176)
378 PRK14737 gmk guanylate kinase; 97.4 0.00017 3.7E-09 46.0 3.1 22 23-44 6-27 (186)
379 cd00009 AAA The AAA+ (ATPases 97.4 0.00017 3.6E-09 42.8 3.0 23 23-45 21-43 (151)
380 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00016 3.5E-09 45.5 3.0 20 23-42 5-24 (188)
381 TIGR00235 udk uridine kinase. 97.4 0.00023 4.9E-09 45.9 3.7 24 20-43 5-28 (207)
382 PRK13695 putative NTPase; Prov 97.4 0.00018 3.9E-09 45.1 3.2 22 22-43 1-22 (174)
383 PF02367 UPF0079: Uncharacteri 97.4 0.00051 1.1E-08 41.0 4.9 33 23-55 17-51 (123)
384 PF03205 MobB: Molybdopterin g 97.4 0.00017 3.8E-09 43.9 2.9 21 23-43 2-22 (140)
385 cd01428 ADK Adenylate kinase ( 97.4 0.00015 3.3E-09 45.8 2.8 22 23-44 1-22 (194)
386 PRK00625 shikimate kinase; Pro 97.4 0.0002 4.3E-09 45.2 3.2 22 23-44 2-23 (173)
387 PRK14531 adenylate kinase; Pro 97.4 0.0002 4.3E-09 45.3 3.2 22 22-43 3-24 (183)
388 PTZ00088 adenylate kinase 1; P 97.4 0.00019 4.1E-09 47.2 3.2 23 22-44 7-29 (229)
389 PHA00729 NTP-binding motif con 97.4 0.00022 4.7E-09 46.8 3.4 23 22-44 18-40 (226)
390 COG1136 SalX ABC-type antimicr 97.4 0.00017 3.8E-09 47.3 2.9 22 23-44 33-54 (226)
391 cd03260 ABC_PstB_phosphate_tra 97.4 0.00056 1.2E-08 44.5 5.4 23 23-45 28-50 (227)
392 PRK08233 hypothetical protein; 97.4 0.00019 4.1E-09 44.9 3.0 23 22-44 4-26 (182)
393 COG2895 CysN GTPases - Sulfate 97.4 0.00098 2.1E-08 46.5 6.6 83 19-103 4-119 (431)
394 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00021 4.5E-09 41.7 2.8 20 23-42 17-36 (107)
395 PF00437 T2SE: Type II/IV secr 97.4 0.00022 4.7E-09 47.7 3.3 24 21-44 127-150 (270)
396 PRK02496 adk adenylate kinase; 97.3 0.00024 5.3E-09 44.8 3.3 22 22-43 2-23 (184)
397 TIGR02868 CydC thiol reductant 97.3 0.0004 8.8E-09 50.5 4.9 22 23-44 363-384 (529)
398 TIGR00073 hypB hydrogenase acc 97.3 0.00025 5.4E-09 45.8 3.3 25 20-44 21-45 (207)
399 PRK05480 uridine/cytidine kina 97.3 0.00026 5.7E-09 45.6 3.4 25 20-44 5-29 (209)
400 COG0194 Gmk Guanylate kinase [ 97.3 0.00023 5E-09 45.3 3.0 24 22-45 5-28 (191)
401 cd02023 UMPK Uridine monophosp 97.3 0.00022 4.8E-09 45.5 3.0 21 24-44 2-22 (198)
402 PRK00300 gmk guanylate kinase; 97.3 0.00022 4.8E-09 45.6 3.0 22 23-44 7-28 (205)
403 TIGR01351 adk adenylate kinase 97.3 0.0002 4.3E-09 46.3 2.8 21 23-43 1-21 (210)
404 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00023 5E-09 44.7 3.0 20 24-43 2-21 (183)
405 KOG0066|consensus 97.3 0.00098 2.1E-08 48.1 6.3 23 22-44 614-636 (807)
406 PRK05057 aroK shikimate kinase 97.3 0.00026 5.7E-09 44.5 3.2 22 23-44 6-27 (172)
407 PLN02200 adenylate kinase fami 97.3 0.0004 8.8E-09 45.8 4.1 23 21-43 43-65 (234)
408 COG1120 FepC ABC-type cobalami 97.3 0.00024 5.1E-09 47.5 3.0 20 24-43 31-50 (258)
409 cd03238 ABC_UvrA The excision 97.3 0.00029 6.2E-09 44.6 3.3 20 23-42 23-42 (176)
410 TIGR01313 therm_gnt_kin carboh 97.3 0.0002 4.3E-09 44.3 2.5 21 24-44 1-21 (163)
411 PF00503 G-alpha: G-protein al 97.3 0.0012 2.6E-08 46.5 6.5 46 60-107 227-273 (389)
412 cd01130 VirB11-like_ATPase Typ 97.3 0.0003 6.5E-09 44.7 3.3 23 22-44 26-48 (186)
413 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.0003 6.6E-09 45.5 3.3 22 23-44 32-53 (218)
414 COG1936 Predicted nucleotide k 97.3 0.00028 6.1E-09 44.4 2.8 20 23-42 2-21 (180)
415 COG3638 ABC-type phosphate/pho 97.3 0.00028 6.2E-09 46.6 2.9 21 23-43 32-52 (258)
416 PRK05541 adenylylsulfate kinas 97.3 0.00041 8.9E-09 43.5 3.6 23 21-43 7-29 (176)
417 COG3842 PotA ABC-type spermidi 97.3 0.00028 6E-09 49.2 3.0 22 24-45 34-55 (352)
418 COG4525 TauB ABC-type taurine 97.3 0.00029 6.3E-09 45.6 2.9 21 23-43 33-53 (259)
419 TIGR00960 3a0501s02 Type II (G 97.2 0.00034 7.3E-09 45.2 3.2 22 23-44 31-52 (216)
420 COG0802 Predicted ATPase or ki 97.2 0.0021 4.6E-08 39.6 6.5 22 23-44 27-48 (149)
421 PRK13947 shikimate kinase; Pro 97.2 0.00035 7.6E-09 43.4 3.1 21 23-43 3-23 (171)
422 PRK14241 phosphate transporter 97.2 0.0011 2.5E-08 44.0 5.7 23 23-45 32-54 (258)
423 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00037 8E-09 44.8 3.3 22 23-44 29-50 (211)
424 cd01131 PilT Pilus retraction 97.2 0.00033 7.2E-09 45.0 3.0 21 24-44 4-24 (198)
425 cd02021 GntK Gluconate kinase 97.2 0.00036 7.7E-09 42.5 3.0 21 24-44 2-22 (150)
426 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00038 8.2E-09 44.7 3.2 22 23-44 28-49 (205)
427 KOG1487|consensus 97.2 0.0012 2.7E-08 44.4 5.6 80 22-104 60-147 (358)
428 TIGR03608 L_ocin_972_ABC putat 97.2 0.00039 8.5E-09 44.5 3.3 23 23-45 26-48 (206)
429 PF01637 Arch_ATPase: Archaeal 97.2 0.00032 7E-09 45.1 2.9 23 23-45 22-44 (234)
430 cd03222 ABC_RNaseL_inhibitor T 97.2 0.00037 7.9E-09 44.1 3.0 23 23-45 27-49 (177)
431 TIGR02315 ABC_phnC phosphonate 97.2 0.00039 8.4E-09 45.7 3.3 22 23-44 30-51 (243)
432 TIGR02673 FtsE cell division A 97.2 0.0004 8.6E-09 44.8 3.3 22 23-44 30-51 (214)
433 TIGR01166 cbiO cobalt transpor 97.2 0.00037 8.1E-09 44.2 3.0 22 23-44 20-41 (190)
434 cd03292 ABC_FtsE_transporter F 97.2 0.00042 9.1E-09 44.6 3.3 22 23-44 29-50 (214)
435 cd03261 ABC_Org_Solvent_Resist 97.2 0.00042 9.1E-09 45.4 3.3 22 23-44 28-49 (235)
436 PRK14528 adenylate kinase; Pro 97.2 0.00043 9.3E-09 44.0 3.2 21 23-43 3-23 (186)
437 PRK10751 molybdopterin-guanine 97.2 0.00038 8.2E-09 44.0 2.9 21 23-43 8-28 (173)
438 TIGR03015 pepcterm_ATPase puta 97.2 0.00037 8E-09 46.3 3.0 22 23-44 45-66 (269)
439 PRK00279 adk adenylate kinase; 97.2 0.00042 9.2E-09 44.9 3.2 21 23-43 2-22 (215)
440 cd00464 SK Shikimate kinase (S 97.2 0.00037 8E-09 42.4 2.8 21 23-43 1-21 (154)
441 cd03269 ABC_putative_ATPase Th 97.2 0.00045 9.8E-09 44.4 3.3 23 23-45 28-50 (210)
442 PF00910 RNA_helicase: RNA hel 97.2 0.00035 7.6E-09 40.5 2.5 21 24-44 1-21 (107)
443 cd03264 ABC_drug_resistance_li 97.2 0.00039 8.6E-09 44.7 3.0 22 23-44 27-48 (211)
444 cd03259 ABC_Carb_Solutes_like 97.2 0.00046 9.9E-09 44.5 3.3 22 23-44 28-49 (213)
445 PF13479 AAA_24: AAA domain 97.2 0.00035 7.5E-09 45.4 2.7 21 21-41 3-23 (213)
446 cd03293 ABC_NrtD_SsuB_transpor 97.2 0.00046 9.9E-09 44.8 3.3 22 23-44 32-53 (220)
447 PRK04040 adenylate kinase; Pro 97.2 0.00047 1E-08 44.0 3.2 23 22-44 3-25 (188)
448 cd03262 ABC_HisP_GlnQ_permease 97.2 0.00047 1E-08 44.4 3.3 23 23-45 28-50 (213)
449 PRK06547 hypothetical protein; 97.2 0.00055 1.2E-08 43.1 3.5 25 20-44 14-38 (172)
450 cd03218 ABC_YhbG The ABC trans 97.2 0.00046 1E-08 45.0 3.3 23 23-45 28-50 (232)
451 cd03265 ABC_DrrA DrrA is the A 97.2 0.00048 1E-08 44.7 3.3 22 23-44 28-49 (220)
452 cd03224 ABC_TM1139_LivF_branch 97.2 0.00045 9.8E-09 44.7 3.2 22 23-44 28-49 (222)
453 KOG2486|consensus 97.2 0.0014 3.1E-08 44.3 5.5 59 18-79 133-192 (320)
454 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.00089 1.9E-08 50.3 5.1 22 23-44 481-502 (686)
455 TIGR02881 spore_V_K stage V sp 97.2 0.00062 1.3E-08 45.4 3.8 26 18-43 39-64 (261)
456 PRK14529 adenylate kinase; Pro 97.2 0.00046 1E-08 45.3 3.1 22 22-43 1-22 (223)
457 PRK13541 cytochrome c biogenes 97.1 0.00051 1.1E-08 43.8 3.3 23 23-45 28-50 (195)
458 cd03229 ABC_Class3 This class 97.1 0.00053 1.1E-08 43.2 3.3 22 23-44 28-49 (178)
459 PRK14237 phosphate transporter 97.1 0.0015 3.2E-08 43.8 5.5 23 23-45 48-70 (267)
460 PF00448 SRP54: SRP54-type pro 97.1 0.00046 9.9E-09 44.4 3.0 20 23-42 3-22 (196)
461 PRK14257 phosphate ABC transpo 97.1 0.0015 3.2E-08 45.2 5.7 23 23-45 110-132 (329)
462 cd03257 ABC_NikE_OppD_transpor 97.1 0.0005 1.1E-08 44.7 3.2 23 23-45 33-55 (228)
463 TIGR02211 LolD_lipo_ex lipopro 97.1 0.00052 1.1E-08 44.5 3.3 23 23-45 33-55 (221)
464 PRK06762 hypothetical protein; 97.1 0.00048 1.1E-08 42.7 3.0 22 23-44 4-25 (166)
465 PRK11629 lolD lipoprotein tran 97.1 0.00052 1.1E-08 44.9 3.3 22 23-44 37-58 (233)
466 PRK00131 aroK shikimate kinase 97.1 0.00052 1.1E-08 42.5 3.1 22 22-43 5-26 (175)
467 cd03256 ABC_PhnC_transporter A 97.1 0.00046 1E-08 45.2 3.0 22 23-44 29-50 (241)
468 cd03266 ABC_NatA_sodium_export 97.1 0.00052 1.1E-08 44.4 3.2 22 23-44 33-54 (218)
469 cd03258 ABC_MetN_methionine_tr 97.1 0.00052 1.1E-08 44.8 3.3 23 23-45 33-55 (233)
470 cd03301 ABC_MalK_N The N-termi 97.1 0.00055 1.2E-08 44.1 3.3 23 23-45 28-50 (213)
471 cd02025 PanK Pantothenate kina 97.1 0.00045 9.7E-09 45.2 2.9 20 24-43 2-21 (220)
472 PRK14268 phosphate ABC transpo 97.1 0.0017 3.6E-08 43.2 5.6 23 23-45 40-62 (258)
473 PRK14249 phosphate ABC transpo 97.1 0.0017 3.7E-08 43.0 5.7 23 23-45 32-54 (251)
474 cd00227 CPT Chloramphenicol (C 97.1 0.0005 1.1E-08 43.2 3.0 22 23-44 4-25 (175)
475 PRK11248 tauB taurine transpor 97.1 0.00053 1.2E-08 45.6 3.3 23 23-45 29-51 (255)
476 cd01128 rho_factor Transcripti 97.1 0.00055 1.2E-08 45.6 3.3 23 23-45 18-40 (249)
477 PRK14526 adenylate kinase; Pro 97.1 0.00053 1.2E-08 44.6 3.2 21 23-43 2-22 (211)
478 cd03219 ABC_Mj1267_LivG_branch 97.1 0.0005 1.1E-08 45.0 3.1 22 23-44 28-49 (236)
479 cd03263 ABC_subfamily_A The AB 97.1 0.00056 1.2E-08 44.3 3.3 23 23-45 30-52 (220)
480 PRK08099 bifunctional DNA-bind 97.1 0.0005 1.1E-08 48.7 3.2 27 18-44 216-242 (399)
481 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00053 1.1E-08 47.3 3.2 24 21-44 162-185 (325)
482 cd03235 ABC_Metallic_Cations A 97.1 0.00052 1.1E-08 44.2 3.1 22 23-44 27-48 (213)
483 cd03268 ABC_BcrA_bacitracin_re 97.1 0.00052 1.1E-08 44.1 3.0 23 23-45 28-50 (208)
484 KOG0467|consensus 97.1 0.0014 3.1E-08 49.5 5.6 87 17-103 5-105 (887)
485 PRK10908 cell division protein 97.1 0.00059 1.3E-08 44.3 3.3 22 23-44 30-51 (222)
486 PRK13540 cytochrome c biogenes 97.1 0.00082 1.8E-08 43.0 3.9 23 23-45 29-51 (200)
487 PRK15177 Vi polysaccharide exp 97.1 0.00053 1.1E-08 44.5 3.0 23 23-45 15-37 (213)
488 smart00072 GuKc Guanylate kina 97.1 0.00057 1.2E-08 43.3 3.1 22 24-45 5-26 (184)
489 PRK09270 nucleoside triphospha 97.1 0.0007 1.5E-08 44.3 3.6 25 19-43 31-55 (229)
490 TIGR01978 sufC FeS assembly AT 97.1 0.00058 1.2E-08 44.8 3.2 22 23-44 28-49 (243)
491 TIGR01189 ccmA heme ABC export 97.1 0.00062 1.4E-08 43.5 3.3 23 23-45 28-50 (198)
492 cd03296 ABC_CysA_sulfate_impor 97.1 0.0006 1.3E-08 44.8 3.3 22 23-44 30-51 (239)
493 PF00625 Guanylate_kin: Guanyl 97.1 0.00056 1.2E-08 43.2 3.0 21 24-44 5-25 (183)
494 PRK13851 type IV secretion sys 97.1 0.00066 1.4E-08 47.2 3.6 25 21-45 162-186 (344)
495 PRK11247 ssuB aliphatic sulfon 97.1 0.00061 1.3E-08 45.5 3.3 23 23-45 40-62 (257)
496 COG1117 PstB ABC-type phosphat 97.1 0.00046 1E-08 45.1 2.6 19 24-42 36-54 (253)
497 cd01672 TMPK Thymidine monopho 97.1 0.00056 1.2E-08 43.2 3.0 20 24-43 3-22 (200)
498 cd03216 ABC_Carb_Monos_I This 97.1 0.00093 2E-08 41.5 3.9 23 23-45 28-50 (163)
499 PRK14242 phosphate transporter 97.1 0.00062 1.4E-08 45.0 3.3 22 23-44 34-55 (253)
500 PRK10895 lipopolysaccharide AB 97.1 0.00063 1.4E-08 44.7 3.3 23 23-45 31-53 (241)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.2e-33 Score=176.71 Aligned_cols=94 Identities=57% Similarity=0.996 Sum_probs=90.4
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
....++.+||+|+|++|||||+|+.||..+.|++.+..|+|+++..+.++++++.++|++|||+|||+|+.+...|||+|
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccccCC
Q psy5771 95 NGVIIGEILCFYGT 108 (108)
Q Consensus 95 ~~~i~v~dit~~~s 108 (108)
|++|+|||||+..|
T Consensus 83 hGii~vyDiT~~~S 96 (205)
T KOG0084|consen 83 HGIIFVYDITKQES 96 (205)
T ss_pred CeEEEEEEcccHHH
Confidence 99999999998764
No 2
>KOG0094|consensus
Probab=99.98 E-value=6.2e-32 Score=168.91 Aligned_cols=92 Identities=38% Similarity=0.604 Sum_probs=88.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.+-..+|++++|+.+|||||||+||+.+.|...|.+|+|++|..+.+.+.++.+.|++|||+|||+|+.+.+.|+|++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccCC
Q psy5771 97 VIIGEILCFYGT 108 (108)
Q Consensus 97 ~i~v~dit~~~s 108 (108)
+|+|||+||++|
T Consensus 98 aviVyDit~~~S 109 (221)
T KOG0094|consen 98 AVIVYDITDRNS 109 (221)
T ss_pred EEEEEeccccch
Confidence 999999999886
No 3
>KOG0080|consensus
Probab=99.97 E-value=1.9e-30 Score=158.22 Aligned_cols=93 Identities=52% Similarity=0.868 Sum_probs=88.4
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCc
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 95 (108)
+.+...+||+++|++|||||||+.+|..+.|.+....|+|++|..+.+.++++.+++.||||+|||+|+.+.+.|||+|+
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 46678899999999999999999999999999888788999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccCC
Q psy5771 96 GVIIGEILCFYGT 108 (108)
Q Consensus 96 ~~i~v~dit~~~s 108 (108)
++|+|||+|.+++
T Consensus 86 GiIlVYDVT~Rdt 98 (209)
T KOG0080|consen 86 GIILVYDVTSRDT 98 (209)
T ss_pred eeEEEEEccchhh
Confidence 9999999998764
No 4
>KOG0092|consensus
Probab=99.97 E-value=1.5e-30 Score=162.20 Aligned_cols=90 Identities=44% Similarity=0.713 Sum_probs=86.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+|+|+.+||||||+.||..++|.+...||+|..|..+.+.+++..+++.||||+|||+|+.+.+.|||+|++.|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35689999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||||+.+|
T Consensus 83 vvYDit~~~S 92 (200)
T KOG0092|consen 83 VVYDITDEES 92 (200)
T ss_pred EEEecccHHH
Confidence 9999999875
No 5
>KOG0095|consensus
Probab=99.96 E-value=1.8e-29 Score=152.64 Aligned_cols=94 Identities=59% Similarity=0.995 Sum_probs=89.3
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
+..+.+.+||+++|..|||||+|+++|.++-|++....|+|++|..+.+++++..+++++||++|||+|+.+...||+.|
T Consensus 1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccccCC
Q psy5771 95 NGVIIGEILCFYGT 108 (108)
Q Consensus 95 ~~~i~v~dit~~~s 108 (108)
+++|++|||++-.|
T Consensus 81 halilvydiscqps 94 (213)
T KOG0095|consen 81 HALILVYDISCQPS 94 (213)
T ss_pred ceEEEEEecccCcc
Confidence 99999999997543
No 6
>KOG0078|consensus
Probab=99.96 E-value=2.2e-29 Score=159.11 Aligned_cols=94 Identities=54% Similarity=0.956 Sum_probs=90.5
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
.+++++.+||+++|+++||||+|+.+|..+.|...+..|+|++|..+.+.++++.+.+++||++||++|+.+.+.||+.|
T Consensus 6 ~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 6 KEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred cCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccccCC
Q psy5771 95 NGVIIGEILCFYGT 108 (108)
Q Consensus 95 ~~~i~v~dit~~~s 108 (108)
+++++||||||..|
T Consensus 86 ~gi~LvyDitne~S 99 (207)
T KOG0078|consen 86 MGILLVYDITNEKS 99 (207)
T ss_pred CeeEEEEEccchHH
Confidence 99999999999865
No 7
>KOG0098|consensus
Probab=99.96 E-value=1.3e-28 Score=153.07 Aligned_cols=91 Identities=49% Similarity=0.889 Sum_probs=87.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
+.+.+|++++|+.|||||+|+.||..+.|.+.+..|+|+++-.+.+.+++++++|++||++|+|.|+.+...||++|.+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCC
Q psy5771 98 IIGEILCFYGT 108 (108)
Q Consensus 98 i~v~dit~~~s 108 (108)
|+|||||+++|
T Consensus 83 lLVydit~r~s 93 (216)
T KOG0098|consen 83 LLVYDITRRES 93 (216)
T ss_pred EEEEEccchhh
Confidence 99999999875
No 8
>KOG0086|consensus
Probab=99.95 E-value=1.3e-28 Score=149.26 Aligned_cols=94 Identities=48% Similarity=0.932 Sum_probs=90.4
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
...+++.+|++++|+.|.|||+|+++|+.++|..+...|+|++|-++.+.++++.++|+|||++|||+|+...+.||++|
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccccCC
Q psy5771 95 NGVIIGEILCFYGT 108 (108)
Q Consensus 95 ~~~i~v~dit~~~s 108 (108)
.+.++|||+|+++|
T Consensus 83 AGAlLVYD~Tsrds 96 (214)
T KOG0086|consen 83 AGALLVYDITSRDS 96 (214)
T ss_pred cceEEEEeccchhh
Confidence 99999999999876
No 9
>KOG0079|consensus
Probab=99.95 E-value=3.2e-28 Score=146.79 Aligned_cols=92 Identities=53% Similarity=0.893 Sum_probs=87.7
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.....+|.+++|++|||||+|+.+|..+.|...|..|+|+++..+.+.++|..++|+|||++|+|+|+.+...||++.++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccCC
Q psy5771 97 VIIGEILCFYGT 108 (108)
Q Consensus 97 ~i~v~dit~~~s 108 (108)
+++|||+||-.|
T Consensus 84 v~vVYDVTn~ES 95 (198)
T KOG0079|consen 84 VIVVYDVTNGES 95 (198)
T ss_pred EEEEEECcchhh
Confidence 999999999765
No 10
>KOG0087|consensus
Probab=99.95 E-value=1.6e-27 Score=150.56 Aligned_cols=94 Identities=50% Similarity=0.878 Sum_probs=89.7
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 14 ~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
.....++.+||+++|+++||||-|+.||..++|..+..+|+|+++..+.+.++++.++.+||||+|||+|+.+...||++
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
|.+.++|||||...
T Consensus 87 AvGAllVYDITr~~ 100 (222)
T KOG0087|consen 87 AVGALLVYDITRRQ 100 (222)
T ss_pred cceeEEEEechhHH
Confidence 99999999999764
No 11
>KOG0093|consensus
Probab=99.95 E-value=3.3e-27 Score=142.23 Aligned_cols=102 Identities=41% Similarity=0.716 Sum_probs=92.0
Q ss_pred CCCCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc
Q psy5771 7 NDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 7 ~~~~~~~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 86 (108)
...+..+..+.-++.+|++++|+..||||||+.|++++.|...+..|.|++|..+.+.-..+++++++|||+|+|+|+.+
T Consensus 7 ~~~~~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti 86 (193)
T KOG0093|consen 7 YGASKDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI 86 (193)
T ss_pred CCCccccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH
Confidence 33333444555678899999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hHhhcccCcEEEEEEeccccCC
Q psy5771 87 TQSYYRSANGVIIGEILCFYGT 108 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~~~s 108 (108)
...|||+++++|+|||+||..|
T Consensus 87 TTayyRgamgfiLmyDitNeeS 108 (193)
T KOG0093|consen 87 TTAYYRGAMGFILMYDITNEES 108 (193)
T ss_pred HHHHhhccceEEEEEecCCHHH
Confidence 9999999999999999999765
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=2.8e-27 Score=151.89 Aligned_cols=87 Identities=51% Similarity=0.869 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+.|+++|+.|||||||+++|..+.|.+.+.+|++.++..+.+.++++.+.+++||++|+++|..+++.|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 37999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+|+..|
T Consensus 81 Dvtd~~S 87 (202)
T cd04120 81 DITKKET 87 (202)
T ss_pred ECcCHHH
Confidence 9998754
No 13
>KOG0394|consensus
Probab=99.95 E-value=1.2e-27 Score=148.47 Aligned_cols=91 Identities=38% Similarity=0.674 Sum_probs=86.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
....+||+++|++|||||||+++|..++|...+-.|+|.+|..+.+.++++.+.++||||+|||+|..+.-.+||++|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCC
Q psy5771 98 IIGEILCFYGT 108 (108)
Q Consensus 98 i~v~dit~~~s 108 (108)
++|||+.+..|
T Consensus 86 vlvydv~~~~S 96 (210)
T KOG0394|consen 86 VLVYDVNNPKS 96 (210)
T ss_pred EEEeecCChhh
Confidence 99999998764
No 14
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=6.5e-27 Score=148.10 Aligned_cols=90 Identities=26% Similarity=0.451 Sum_probs=82.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
+...+||+++|+++||||||+.+|..+.|.+++.||++..+ .+.+.+++..+.+++||++|+++|..+++.+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 35678999999999999999999999999999999998554 56788899999999999999999999999999999999
Q ss_pred EEEEeccccCC
Q psy5771 98 IIGEILCFYGT 108 (108)
Q Consensus 98 i~v~dit~~~s 108 (108)
++|||+|+..|
T Consensus 81 ilvyDit~~~S 91 (182)
T cd04172 81 LICFDISRPET 91 (182)
T ss_pred EEEEECCCHHH
Confidence 99999999764
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=8.5e-27 Score=148.35 Aligned_cols=91 Identities=40% Similarity=0.713 Sum_probs=84.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
.+..+||+++|+.|||||||+.+|..+.|.+.+.++.+.++....+.+++..+.+++||++|+++|..+++.+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999999888889999888888889999999999999999999999999999999999
Q ss_pred EEEEeccccCC
Q psy5771 98 IIGEILCFYGT 108 (108)
Q Consensus 98 i~v~dit~~~s 108 (108)
|+|||+|+..|
T Consensus 83 llVfD~t~~~S 93 (189)
T cd04121 83 ILVYDITNRWS 93 (189)
T ss_pred EEEEECcCHHH
Confidence 99999998754
No 16
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=1.2e-26 Score=147.74 Aligned_cols=87 Identities=30% Similarity=0.508 Sum_probs=79.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|+++||||||+.+|..+.|.+.+.||++..+ ...+.++++.+.+++||++|+++|+.+++.|++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999989999998544 55677899999999999999999999999999999999999
Q ss_pred EeccccCC
Q psy5771 101 EILCFYGT 108 (108)
Q Consensus 101 ~dit~~~s 108 (108)
||+++..|
T Consensus 82 ydit~~~S 89 (191)
T cd01875 82 FSIASPSS 89 (191)
T ss_pred EECCCHHH
Confidence 99998764
No 17
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=2.1e-26 Score=145.27 Aligned_cols=87 Identities=24% Similarity=0.441 Sum_probs=80.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||+++|..+.|+..+.||++.++ .+.+.+++..+.+++||++|++.|..+++.++++++++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999999999998554 56788899999999999999999999999999999999999
Q ss_pred EeccccCC
Q psy5771 101 EILCFYGT 108 (108)
Q Consensus 101 ~dit~~~s 108 (108)
||+++..|
T Consensus 80 fdit~~~S 87 (178)
T cd04131 80 FDISRPET 87 (178)
T ss_pred EECCChhh
Confidence 99999765
No 18
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=2.4e-26 Score=144.83 Aligned_cols=86 Identities=34% Similarity=0.551 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|+++||||||+.+|..+.|..++.||++..+ ...+.++++.+++++||++|+++|..+++.++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999999999998655 566788999999999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 81 d~~~~~S 87 (176)
T cd04133 81 SLISRAS 87 (176)
T ss_pred EcCCHHH
Confidence 9998764
No 19
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.94 E-value=2.3e-26 Score=145.54 Aligned_cols=87 Identities=31% Similarity=0.529 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|..+.|.+++.||++.++..+.+.+++..+.+++||++|+++|..+++.++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999989999998888888999999999999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 81 D~t~~~s 87 (182)
T cd04128 81 DLTRKST 87 (182)
T ss_pred ECcCHHH
Confidence 9998753
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=7e-26 Score=147.99 Aligned_cols=89 Identities=21% Similarity=0.382 Sum_probs=82.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||+|+.+|..+.|...+.||++.++ ...+.+++..+.++|||++|+++|..+++.|+++++++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 4678999999999999999999999999999999998665 456888999999999999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||+|+..|
T Consensus 90 lVyDit~~~S 99 (232)
T cd04174 90 LCFDISRPET 99 (232)
T ss_pred EEEECCChHH
Confidence 9999998764
No 21
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=4e-26 Score=146.51 Aligned_cols=87 Identities=25% Similarity=0.519 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC-----CeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-----GKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
+||+++|+++||||||+++|+++.|.+.+.||++.++..+.+.++ ++.+.+++||++|+++|..+++.+|+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999999999999988887777774 578999999999999999999999999999
Q ss_pred EEEEEeccccCC
Q psy5771 97 VIIGEILCFYGT 108 (108)
Q Consensus 97 ~i~v~dit~~~s 108 (108)
+|+|||+|+..|
T Consensus 81 iIlVyDvtn~~S 92 (202)
T cd04102 81 IILVHDLTNRKS 92 (202)
T ss_pred EEEEEECcChHH
Confidence 999999999764
No 22
>KOG0091|consensus
Probab=99.94 E-value=4.6e-27 Score=143.79 Aligned_cols=91 Identities=42% Similarity=0.818 Sum_probs=86.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEE-CCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
..++++++++|++-||||+|+++|.+++|.+-.+||+|++|+.+.++. +|.+++|++|||+|||+|+.+.+.||++.-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 468899999999999999999999999999999999999999988887 6789999999999999999999999999999
Q ss_pred EEEEEeccccCC
Q psy5771 97 VIIGEILCFYGT 108 (108)
Q Consensus 97 ~i~v~dit~~~s 108 (108)
+++|||+||..|
T Consensus 85 vllvyditnr~s 96 (213)
T KOG0091|consen 85 VLLVYDITNRES 96 (213)
T ss_pred eEEEEeccchhh
Confidence 999999999865
No 23
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=6.6e-26 Score=147.32 Aligned_cols=86 Identities=23% Similarity=0.452 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+|+|++|||||||+.+|..+.|++.|.||++.++ ...+.++++.+.|.+||++|++.|..+++.+++++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999999999999999999999998554 467888999999999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 81 dis~~~S 87 (222)
T cd04173 81 DISRPET 87 (222)
T ss_pred ECCCHHH
Confidence 9998753
No 24
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=1.3e-25 Score=141.25 Aligned_cols=86 Identities=27% Similarity=0.436 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|..+.|.+.+.||++..+ ...+.++++.+.+++||++|+++|..+++.+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 7999999999999999999999999888999998555 456778889999999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 81 d~~~~~s 87 (175)
T cd01874 81 SVVSPSS 87 (175)
T ss_pred ECCCHHH
Confidence 9998753
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=1.6e-25 Score=139.27 Aligned_cols=87 Identities=47% Similarity=0.927 Sum_probs=81.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||+++|..+.|...+.+|.+.++....+.+++..+.+.+||++|++++..+++.++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999999988889999888888888999999999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 82 ~d~~~~~ 88 (166)
T cd04122 82 YDITRRS 88 (166)
T ss_pred EECCCHH
Confidence 9999864
No 26
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=1.7e-25 Score=143.25 Aligned_cols=87 Identities=47% Similarity=0.760 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC-CeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
+||+++|++|||||||+++|.++.+...+.||++.++....+.++ +..+.+.+||++|+++|..+++.++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 599999999999999999999999998899999988888888887 7889999999999999999999999999999999
Q ss_pred EeccccCC
Q psy5771 101 EILCFYGT 108 (108)
Q Consensus 101 ~dit~~~s 108 (108)
||+++..|
T Consensus 81 ~D~t~~~s 88 (201)
T cd04107 81 FDVTRPST 88 (201)
T ss_pred EECCCHHH
Confidence 99998643
No 27
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.93 E-value=2.3e-25 Score=139.44 Aligned_cols=85 Identities=47% Similarity=0.769 Sum_probs=80.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|++|||||||+++|.++.|.+++.||++.++..+.+.+++..+.+++||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred ccccC
Q psy5771 103 LCFYG 107 (108)
Q Consensus 103 it~~~ 107 (108)
+++..
T Consensus 82 ~~~~~ 86 (170)
T cd04108 82 LTDVA 86 (170)
T ss_pred CcCHH
Confidence 98754
No 28
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=3.9e-25 Score=143.49 Aligned_cols=90 Identities=36% Similarity=0.499 Sum_probs=83.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||+++|+.+.|...+.||++.++....+..++..+.+.+||++|+++|..+++.++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 66799999999999999999999999999999999998888888888888899999999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||+++..|
T Consensus 91 lvfD~~~~~s 100 (219)
T PLN03071 91 IMFDVTARLT 100 (219)
T ss_pred EEEeCCCHHH
Confidence 9999998753
No 29
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=3.2e-25 Score=149.78 Aligned_cols=94 Identities=28% Similarity=0.513 Sum_probs=84.3
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECC-------------eEEEEEEeeCCChh
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDG-------------KKVKLQIWDTAGQE 81 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~l~l~D~~g~~ 81 (108)
...+...+||+|+|+.|||||||+++|+++.|...+.+|+|.++..+.+.+++ +.+.++|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 34456779999999999999999999999999988999999988878777752 57899999999999
Q ss_pred hhccchHhhcccCcEEEEEEeccccCC
Q psy5771 82 RFRTITQSYYRSANGVIIGEILCFYGT 108 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~dit~~~s 108 (108)
+|..+++.|+++++++|+|||+|+..|
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~S 121 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRT 121 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHH
Confidence 999999999999999999999998753
No 30
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=6.3e-25 Score=136.23 Aligned_cols=87 Identities=52% Similarity=0.927 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|..+.|.+.+.||.+.++..+.+.+++..+.+++||++|++++..+++.+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999999888999998888888899988999999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 81 d~~~~~s 87 (161)
T cd04117 81 DISSERS 87 (161)
T ss_pred ECCCHHH
Confidence 9998753
No 31
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=5.9e-25 Score=136.01 Aligned_cols=86 Identities=30% Similarity=0.670 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++++++++.+.+.|+.+.++..+.+.+++..+.+++||++|++.+..+++.+++.++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 D~~~~~ 86 (168)
T cd04119 81 DVTDRQ 86 (168)
T ss_pred ECCCHH
Confidence 999754
No 32
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.92 E-value=6.7e-25 Score=136.61 Aligned_cols=88 Identities=55% Similarity=0.945 Sum_probs=82.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
+.+||+++|++|||||||+++|.++.|.+.+.|+.+.++....+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 56899999999999999999999999999999999988888888889988999999999999999999999999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 82 v~d~~~~~ 89 (167)
T cd01867 82 VYDITDEK 89 (167)
T ss_pred EEECcCHH
Confidence 99998754
No 33
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=1.3e-24 Score=135.41 Aligned_cols=89 Identities=40% Similarity=0.702 Sum_probs=83.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
+..+||+++|+++||||||+++|..+.+.+.+.++.+.++..+.+.++++.+.+++||++|++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999999998888899998888888889999999999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 83 ~v~d~~~~~ 91 (170)
T cd04116 83 LTFAVDDSQ 91 (170)
T ss_pred EEEECCCHH
Confidence 999999864
No 34
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=7.2e-25 Score=137.73 Aligned_cols=86 Identities=33% Similarity=0.496 Sum_probs=78.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+.+|..+.|.+++.||.+ +.+...+.++++.+.+.+||++|++.|..+++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999999999999986 455567778888999999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 81 d~~~~~s 87 (174)
T cd01871 81 SLVSPAS 87 (174)
T ss_pred ECCCHHH
Confidence 9998754
No 35
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.92 E-value=9.4e-25 Score=136.93 Aligned_cols=87 Identities=32% Similarity=0.495 Sum_probs=79.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||+++|..++|.+.+.||.+..+ ...+.+++..+.+++||++|+++|..+++.+++.++++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999988899998444 55678889999999999999999999999999999999999
Q ss_pred EeccccCC
Q psy5771 101 EILCFYGT 108 (108)
Q Consensus 101 ~dit~~~s 108 (108)
||+++..|
T Consensus 81 ~d~~~~~S 88 (172)
T cd04141 81 YSVTDRHS 88 (172)
T ss_pred EECCchhH
Confidence 99998764
No 36
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=1.1e-24 Score=139.37 Aligned_cols=89 Identities=54% Similarity=0.885 Sum_probs=82.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
+..+||+++|++|||||||+++|.++.|...+.||.+.++....+.+++..+.+.+||++|++.+..++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999998888999998888888888888899999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 84 lv~D~~~~~ 92 (199)
T cd04110 84 VVYDVTNGE 92 (199)
T ss_pred EEEECCCHH
Confidence 999999864
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.92 E-value=6.3e-25 Score=135.73 Aligned_cols=86 Identities=44% Similarity=0.746 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|+++||||||+++|.++.|.+.+.||.+.+.....+.+++..+.+++||++|+++|..+++.+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q psy5771 103 LCFYGT 108 (108)
Q Consensus 103 it~~~s 108 (108)
+++..|
T Consensus 81 ~~~~~S 86 (162)
T PF00071_consen 81 VTDEES 86 (162)
T ss_dssp TTBHHH
T ss_pred cccccc
Confidence 998754
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=1.2e-24 Score=136.73 Aligned_cols=90 Identities=40% Similarity=0.717 Sum_probs=81.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC----------CeEEEEEEeeCCChhhhccchH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID----------GKKVKLQIWDTAGQERFRTITQ 88 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~l~l~D~~g~~~~~~~~~ 88 (108)
++.+||+++|++|||||||+++|.++.+.+.+.+|++.++....+.+. +..+.+.+||++|++++..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 456999999999999999999999999999999999988877777664 4578999999999999999999
Q ss_pred hhcccCcEEEEEEeccccCC
Q psy5771 89 SYYRSANGVIIGEILCFYGT 108 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~~~s 108 (108)
.+++++|++++|||+++..|
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s 101 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQS 101 (180)
T ss_pred HHhCCCCEEEEEEECCCHHH
Confidence 99999999999999998643
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=1.4e-24 Score=134.74 Aligned_cols=87 Identities=57% Similarity=0.965 Sum_probs=81.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+++||++|++++..++..++++++++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999999888889999888888888898899999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 82 ~d~~~~~ 88 (166)
T cd01869 82 YDVTDQE 88 (166)
T ss_pred EECcCHH
Confidence 9999864
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=9.2e-25 Score=134.91 Aligned_cols=85 Identities=35% Similarity=0.594 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||++++..+.+.+.+.||.+ +.+.+.+.+++..+.+++||++|+++|..+++.++++++++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888889886 566677888998999999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (163)
T cd04136 81 SITSQS 86 (163)
T ss_pred ECCCHH
Confidence 999754
No 41
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=1.9e-24 Score=134.38 Aligned_cols=86 Identities=48% Similarity=0.772 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||++++.+++|...+.|+.+.++....+..++..+.+++||++|++++..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998889999998887778888888899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 82 d~~~~~ 87 (165)
T cd01865 82 DITNEE 87 (165)
T ss_pred ECCCHH
Confidence 998754
No 42
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=1.2e-24 Score=140.71 Aligned_cols=87 Identities=34% Similarity=0.531 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECC-eEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDG-KKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
+||+++|++|||||||+++|.++.|...+.||++.+++.+.+.+++ ..+.+++||++|++.+..+++.+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999999888888864 578999999999999999999999999999999
Q ss_pred EeccccCC
Q psy5771 101 EILCFYGT 108 (108)
Q Consensus 101 ~dit~~~s 108 (108)
||+++..|
T Consensus 81 ~D~t~~~s 88 (215)
T cd04109 81 YDVTNSQS 88 (215)
T ss_pred EECCCHHH
Confidence 99998643
No 43
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=2.1e-24 Score=133.85 Aligned_cols=86 Identities=33% Similarity=0.551 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||++++..++|.+.+.++.+.+++...+.++++.+.+++||++|+++|..+++.+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888887787778888889999999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (161)
T cd04124 81 DVTRKI 86 (161)
T ss_pred ECCCHH
Confidence 998753
No 44
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=1.5e-24 Score=134.28 Aligned_cols=86 Identities=37% Similarity=0.599 Sum_probs=79.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||++++..+++.+.+.||.+ +++...+.+++..+.+++||++|+++|..+++.+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999999888888886 56677888889899999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 80 ~d~~~~~ 86 (163)
T cd04176 80 YSLVNQQ 86 (163)
T ss_pred EECCCHH
Confidence 9999864
No 45
>PLN03110 Rab GTPase; Provisional
Probab=99.92 E-value=3.5e-24 Score=138.75 Aligned_cols=92 Identities=50% Similarity=0.895 Sum_probs=85.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
..++.+||+++|++|||||||+++|.++.+...+.+|++.++..+.+.+++..+.+++||++|++++..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35577999999999999999999999999988888999999988899999999999999999999999999999999999
Q ss_pred EEEEEeccccCC
Q psy5771 97 VIIGEILCFYGT 108 (108)
Q Consensus 97 ~i~v~dit~~~s 108 (108)
+++|||+++..|
T Consensus 88 ~ilv~d~~~~~s 99 (216)
T PLN03110 88 ALLVYDITKRQT 99 (216)
T ss_pred EEEEEECCChHH
Confidence 999999998643
No 46
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=2.9e-24 Score=134.30 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=82.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
+..+||+++|++|||||||+++|.++.|. .++.||.+.++....+.+++..+.+.+||++|++.+..+++.+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999998 88999998888777888888889999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 82 llv~d~~~~~ 91 (169)
T cd01892 82 CLVYDSSDPK 91 (169)
T ss_pred EEEEeCCCHH
Confidence 9999998864
No 47
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=2.3e-24 Score=139.14 Aligned_cols=88 Identities=45% Similarity=0.828 Sum_probs=81.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEE-CCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
.+||+++|++|||||||+++|.++.+...+.||++.++..+.+.+ ++..+.+++||++|++++..+++.+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888899998988888887 4678899999999999999999999999999999
Q ss_pred EEeccccCC
Q psy5771 100 GEILCFYGT 108 (108)
Q Consensus 100 v~dit~~~s 108 (108)
|||+++..|
T Consensus 82 v~D~~~~~S 90 (211)
T cd04111 82 VFDITNRES 90 (211)
T ss_pred EEECCCHHH
Confidence 999998643
No 48
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=5e-24 Score=132.87 Aligned_cols=89 Identities=48% Similarity=0.864 Sum_probs=82.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
++.+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999999998888899998888888889988899999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 82 ~v~d~~~~~ 90 (168)
T cd01866 82 LVYDITRRE 90 (168)
T ss_pred EEEECCCHH
Confidence 999999754
No 49
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=5e-24 Score=135.03 Aligned_cols=87 Identities=53% Similarity=0.880 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|.++.|...+.+|.+.++....+.+++..+.+++||++|++.+..+++.+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998888999998888888888888999999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 81 d~~~~~s 87 (188)
T cd04125 81 DVTDQES 87 (188)
T ss_pred ECcCHHH
Confidence 9998653
No 50
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=5.8e-24 Score=132.58 Aligned_cols=86 Identities=36% Similarity=0.589 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++++.+.+...+.||.+.++....+..++..+.+.+||++|++++..+++.+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 59999999999999999999999998889999998888777778888999999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (166)
T cd00877 81 DVTSRV 86 (166)
T ss_pred ECCCHH
Confidence 999764
No 51
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=7.4e-24 Score=131.53 Aligned_cols=88 Identities=73% Similarity=1.170 Sum_probs=81.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
+.+||+++|++|+|||||++++..+.+...+.++.+.++..+.+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999988888999888888888888888999999999999999999999999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 82 v~d~~~~~ 89 (165)
T cd01864 82 AYDITRRS 89 (165)
T ss_pred EEECcCHH
Confidence 99999864
No 52
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=7.5e-24 Score=131.33 Aligned_cols=88 Identities=49% Similarity=0.872 Sum_probs=81.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
+.+||+++|+++||||||++++..+.+...+.|+.+.++....+..+++.+.+.+||++|++++..+++.+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999999988888999988888889999988999999999999999999999999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 82 v~d~~~~~ 89 (165)
T cd01868 82 VYDITKKQ 89 (165)
T ss_pred EEECcCHH
Confidence 99998754
No 53
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.91 E-value=9.2e-24 Score=131.88 Aligned_cols=88 Identities=50% Similarity=0.916 Sum_probs=80.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc-cchHhhcccCcEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-TITQSYYRSANGVII 99 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-~~~~~~~~~~~~~i~ 99 (108)
.+||+++|++|||||||++++..+.+...+.++.+.++..+.+.+++..+.+++||++|++++. .+++.+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999999988889999988888888999999999999999999887 578999999999999
Q ss_pred EEeccccCC
Q psy5771 100 GEILCFYGT 108 (108)
Q Consensus 100 v~dit~~~s 108 (108)
|||+++..|
T Consensus 82 v~d~~~~~s 90 (170)
T cd04115 82 VYDVTNMAS 90 (170)
T ss_pred EEECCCHHH
Confidence 999998643
No 54
>PTZ00369 Ras-like protein; Provisional
Probab=99.91 E-value=4.5e-24 Score=135.50 Aligned_cols=86 Identities=29% Similarity=0.499 Sum_probs=78.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||+++|..+.+...+.||.+..+ .+.+.+++..+.+++||++|+++|..+++.+++.++++++|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 48999999999999999999999999888889987554 56778888899999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 84 ~D~s~~~ 90 (189)
T PTZ00369 84 YSITSRS 90 (189)
T ss_pred EECCCHH
Confidence 9999864
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.91 E-value=7.4e-24 Score=130.83 Aligned_cols=86 Identities=40% Similarity=0.670 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC--CeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID--GKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
+||+++|++++|||||++++.++.+.+.+.||.+.++....+.+. +..+.+++||++|++++..++..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988899999988877777776 778999999999999999999999999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 81 v~d~~~~~ 88 (162)
T cd04106 81 VFSTTDRE 88 (162)
T ss_pred EEECCCHH
Confidence 99998764
No 56
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=5.6e-24 Score=135.12 Aligned_cols=85 Identities=28% Similarity=0.504 Sum_probs=77.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|++|||||||+++|..+.|...+.||.+.++ ...+.+++..+.+++||++|++.|..+++.++++++++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 899999999999999999999999988999997554 4566778888999999999999999999999999999999999
Q ss_pred ccccCC
Q psy5771 103 LCFYGT 108 (108)
Q Consensus 103 it~~~s 108 (108)
+++..|
T Consensus 81 v~~~~s 86 (189)
T cd04134 81 VDSPDS 86 (189)
T ss_pred CCCHHH
Confidence 998754
No 57
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.91 E-value=5.6e-24 Score=131.88 Aligned_cols=85 Identities=34% Similarity=0.603 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||++++..+.+.+.+.||++..+ .+.+.+++..+.+++||++|++++..+++.+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6999999999999999999999999888889987544 567888888999999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (164)
T cd04175 81 SITAQS 86 (164)
T ss_pred ECCCHH
Confidence 998753
No 58
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.91 E-value=1.1e-23 Score=130.08 Aligned_cols=86 Identities=50% Similarity=0.922 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|+++||||||++++.++++...+.++.+.++....+.+++..+.+++||++|++.+...++.+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 59999999999999999999999998888899998888888889888899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (161)
T cd04113 81 DITNRT 86 (161)
T ss_pred ECCCHH
Confidence 999854
No 59
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=134.87 Aligned_cols=93 Identities=49% Similarity=0.836 Sum_probs=82.6
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 14 ~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
........+||+++|++|||||||+++|..+.+. .+.|+.+.++....+.+++..+.+.+||++|+++|..++..+++.
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence 3445556799999999999999999999998874 578899888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
+|++++|||+++..
T Consensus 86 ~d~~vlv~D~~~~~ 99 (211)
T PLN03118 86 AQGIILVYDVTRRE 99 (211)
T ss_pred CCEEEEEEECCCHH
Confidence 99999999999764
No 60
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=5.3e-24 Score=140.38 Aligned_cols=86 Identities=31% Similarity=0.456 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|++++|...+.||++ +++.+.+.++++.+.++|||++|++.|..+++.+++.+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999988899986 677788889999999999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 80 dv~~~~S 86 (247)
T cd04143 80 SLDNRES 86 (247)
T ss_pred eCCCHHH
Confidence 9998643
No 61
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=1.5e-23 Score=133.12 Aligned_cols=86 Identities=38% Similarity=0.615 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
+||+++|++|||||||+++|.++.|.. .+.+|++.++..+.+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999999874 6889999888888899999999999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 81 ~d~~~~~ 87 (193)
T cd04118 81 YDLTDSS 87 (193)
T ss_pred EECCCHH
Confidence 9998764
No 62
>PLN03108 Rab family protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=134.95 Aligned_cols=89 Identities=47% Similarity=0.833 Sum_probs=82.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
++.+||+++|++|||||||+++|..+.+...+.++++.++....+.+++..+.+.+||++|++.+..+++.+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999999998888899998888888899999999999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 84 lv~D~~~~~ 92 (210)
T PLN03108 84 LVYDITRRE 92 (210)
T ss_pred EEEECCcHH
Confidence 999999864
No 63
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.91 E-value=6.8e-24 Score=134.81 Aligned_cols=84 Identities=33% Similarity=0.508 Sum_probs=76.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|++|||||||+++|..+.|...+.||.+.. +...+.+++..+.+++||++|+++|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 68999999999999999999999988888998744 34566788888999999999999999999999999999999999
Q ss_pred ccccC
Q psy5771 103 LCFYG 107 (108)
Q Consensus 103 it~~~ 107 (108)
+++..
T Consensus 80 ~~~~~ 84 (190)
T cd04144 80 ITSRS 84 (190)
T ss_pred CCCHH
Confidence 99864
No 64
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.91 E-value=1.3e-23 Score=129.32 Aligned_cols=85 Identities=32% Similarity=0.500 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|.++++...+.||.+.. +...+.+++..+.+++||++|++++..+++.+++.++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 699999999999999999999999988888988744 4567778888889999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 ~~~~~~ 86 (162)
T cd04138 81 AINSRK 86 (162)
T ss_pred ECCCHH
Confidence 999753
No 65
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=1.5e-23 Score=132.54 Aligned_cols=86 Identities=29% Similarity=0.510 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC-CeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
+||+++|++|||||||+++|.++.+...+.|+.+.++. ..+... +..+.+.+||++|++++..+++.+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999999889999886654 345554 7788999999999999999999999999999999
Q ss_pred EeccccCC
Q psy5771 101 EILCFYGT 108 (108)
Q Consensus 101 ~dit~~~s 108 (108)
||+++..|
T Consensus 80 ~d~~~~~s 87 (187)
T cd04132 80 YAVDNPTS 87 (187)
T ss_pred EECCCHHH
Confidence 99998653
No 66
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=1.9e-23 Score=130.76 Aligned_cols=86 Identities=29% Similarity=0.406 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+.+|.++.|..++.||.. +.+...+.+++..+.+++||++|++++..+++.+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999999988888874 566667888888899999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 80 d~~~~~s 86 (173)
T cd04130 80 SVVNPSS 86 (173)
T ss_pred ECCCHHH
Confidence 9998653
No 67
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.90 E-value=1.3e-23 Score=134.79 Aligned_cols=82 Identities=33% Similarity=0.535 Sum_probs=77.3
Q ss_pred EcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 27 IGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 27 vG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
+|++|||||||+++|+.+.|.+.+.||++.++....+.++++.+.+.+||++|+++|..+++.|+++++++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888999999999888888899999999999999999999999999999999999999987
Q ss_pred CC
Q psy5771 107 GT 108 (108)
Q Consensus 107 ~s 108 (108)
.|
T Consensus 81 ~S 82 (200)
T smart00176 81 VT 82 (200)
T ss_pred HH
Confidence 53
No 68
>KOG0088|consensus
Probab=99.90 E-value=1.1e-24 Score=132.93 Aligned_cols=94 Identities=38% Similarity=0.619 Sum_probs=88.0
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
...+.+.|||+++|+.=||||||+-||+.++|......|+.-.|..+.+.+.+++..|.||||+|||+|+.+-+-||++.
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 34566889999999999999999999999999988888888889999999999999999999999999999999999999
Q ss_pred cEEEEEEeccccCC
Q psy5771 95 NGVIIGEILCFYGT 108 (108)
Q Consensus 95 ~~~i~v~dit~~~s 108 (108)
++.++|||||+.+|
T Consensus 87 nGalLVyDITDrdS 100 (218)
T KOG0088|consen 87 NGALLVYDITDRDS 100 (218)
T ss_pred CceEEEEeccchHH
Confidence 99999999999876
No 69
>KOG0097|consensus
Probab=99.90 E-value=1.6e-23 Score=126.07 Aligned_cols=91 Identities=46% Similarity=0.932 Sum_probs=86.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.+.+.+|.+++|+-|||||+|+++|...+|..+.+.|+|++|-.+.+++.++.+++++||++||++|+...+.||+++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45678999999999999999999999999999898999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
.++|||||.+.
T Consensus 87 almvyditrrs 97 (215)
T KOG0097|consen 87 ALMVYDITRRS 97 (215)
T ss_pred eeEEEEehhhh
Confidence 99999999653
No 70
>KOG0393|consensus
Probab=99.90 E-value=2e-24 Score=136.77 Aligned_cols=88 Identities=31% Similarity=0.480 Sum_probs=83.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC-CeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
..+|+++||+.++|||+|+..|..+.|+++|.||+. |.+...+.++ ++.+.+.+|||+||++|.++++..|.++|+|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999995 8888899995 99999999999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+||+|.+..|
T Consensus 82 ~cfsv~~p~S 91 (198)
T KOG0393|consen 82 LCFSVVSPES 91 (198)
T ss_pred EEEEcCChhh
Confidence 9999998765
No 71
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.90 E-value=3.6e-23 Score=127.60 Aligned_cols=86 Identities=41% Similarity=0.671 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|+++||||||++++.++++...+.|+.+.++....+.+++..+.+++||++|++++..+++.+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888899998898889999888899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (161)
T cd01861 81 DITNRQ 86 (161)
T ss_pred ECcCHH
Confidence 998754
No 72
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=3.9e-23 Score=131.41 Aligned_cols=86 Identities=52% Similarity=0.929 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
+||+++|++|||||||+++|..+++.. .+.++.+.++....+.+++..+.+++||++|++++..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998863 6778888888777788899999999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 81 ~D~~~~~ 87 (191)
T cd04112 81 YDITNKA 87 (191)
T ss_pred EECCCHH
Confidence 9999764
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=5.5e-23 Score=127.25 Aligned_cols=86 Identities=33% Similarity=0.493 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--CccccccCceeeeeEEEEEEEC-CeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
+||+++|++|||||||++++..+ .++.++.++.+.++....+.++ +..+++.+||++|++.+..+++.+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6888899999988877777775 56799999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 81 ~v~d~~~~~ 89 (164)
T cd04101 81 LVYDVSNKA 89 (164)
T ss_pred EEEECcCHH
Confidence 999999864
No 74
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=7.2e-23 Score=126.50 Aligned_cols=87 Identities=45% Similarity=0.749 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|+++||||||++++.++++...+.++.+.++....+.+++..+.+.+||++|++++...++.+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999999887889998888888899999999999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||.++.+
T Consensus 81 ~d~~~~~ 87 (163)
T cd01860 81 YDITSEE 87 (163)
T ss_pred EECcCHH
Confidence 9998764
No 75
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.89 E-value=6.1e-23 Score=128.20 Aligned_cols=84 Identities=31% Similarity=0.504 Sum_probs=75.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEec
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEIL 103 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~di 103 (108)
|+++|++|||||||+++|.++.|...+.|+.+.. +...+.+++..+.+.+||++|+++|..+++.+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 6899999999999999999999988888988644 456778888899999999999999999999999999999999999
Q ss_pred cccCC
Q psy5771 104 CFYGT 108 (108)
Q Consensus 104 t~~~s 108 (108)
++..|
T Consensus 80 ~~~~s 84 (174)
T smart00174 80 DSPAS 84 (174)
T ss_pred CCHHH
Confidence 98643
No 76
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.89 E-value=6.3e-23 Score=126.98 Aligned_cols=85 Identities=35% Similarity=0.588 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||++++.++.+...+.|+.+ +.+.+.+.+++..+.+++||++|++++..+++.+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5999999999999999999999999888888886 445567778888899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 80 d~~~~~ 85 (164)
T smart00173 80 SITDRQ 85 (164)
T ss_pred ECCCHH
Confidence 999754
No 77
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.89 E-value=9.2e-23 Score=126.74 Aligned_cols=85 Identities=27% Similarity=0.363 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||++++..+.|...+.|+.+.. +...+..++..+.+.+||++|+++|..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 799999999999999999999999988888888743 4556667778899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (165)
T cd04140 81 SVTSKQ 86 (165)
T ss_pred ECCCHH
Confidence 999864
No 78
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.89 E-value=1.5e-22 Score=124.98 Aligned_cols=86 Identities=57% Similarity=0.957 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|+++||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 59999999999999999999999988888899998888888888888899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (164)
T smart00175 81 DITNRE 86 (164)
T ss_pred ECCCHH
Confidence 998754
No 79
>KOG0081|consensus
Probab=99.89 E-value=6.6e-25 Score=133.97 Aligned_cols=93 Identities=40% Similarity=0.744 Sum_probs=85.8
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC---------CeEEEEEEeeCCChhhhccc
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID---------GKKVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~l~l~D~~g~~~~~~~ 86 (108)
..+++.+|.+.+|++|||||+++++|..+.|......|+|++|..+.+-++ +..+.+++||++|||+|+.+
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 457888999999999999999999999999999999999999998888763 35789999999999999999
Q ss_pred hHhhcccCcEEEEEEeccccCC
Q psy5771 87 TQSYYRSANGVIIGEILCFYGT 108 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~~~s 108 (108)
...++++|-+++++||+|+..|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqS 105 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQS 105 (219)
T ss_pred HHHHHHhhccceEEEeccchHH
Confidence 9999999999999999999765
No 80
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.89 E-value=2.2e-22 Score=125.21 Aligned_cols=85 Identities=41% Similarity=0.716 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|+++||||||++++.++.+...+.++.+.++..+.+.+++..+.+++||++|++.+..++..+++.++++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888889888888888889999999999999999999999999999999999999
Q ss_pred ecccc
Q psy5771 102 ILCFY 106 (108)
Q Consensus 102 dit~~ 106 (108)
|+++.
T Consensus 81 d~~~~ 85 (172)
T cd01862 81 DVTNP 85 (172)
T ss_pred ECCCH
Confidence 99864
No 81
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.89 E-value=1.7e-22 Score=124.80 Aligned_cols=86 Identities=34% Similarity=0.508 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||+++++++.+...+.++.+. .+...+.+++..+.+++||++|++++..+++.+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc-eEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 479999999999999999999999988888888873 4456677888889999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 81 ~d~~~~~ 87 (164)
T cd04145 81 FSVTDRG 87 (164)
T ss_pred EECCCHH
Confidence 9999753
No 82
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=2.5e-22 Score=129.78 Aligned_cols=90 Identities=33% Similarity=0.488 Sum_probs=82.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.....+||+++|++|||||||+++++.+.+...+.||.+.++....+..++..+.+.+||++|++++..++..+++++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 44556899999999999999999999999988899999998888888788889999999999999999999999999999
Q ss_pred EEEEEecccc
Q psy5771 97 VIIGEILCFY 106 (108)
Q Consensus 97 ~i~v~dit~~ 106 (108)
+++|||+++.
T Consensus 85 ~i~v~d~~~~ 94 (215)
T PTZ00132 85 AIIMFDVTSR 94 (215)
T ss_pred EEEEEECcCH
Confidence 9999999965
No 83
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.89 E-value=2.1e-22 Score=125.81 Aligned_cols=85 Identities=29% Similarity=0.450 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|+|||||+++|..+.+...+.|+.+ +.+...+.+++..+.+.+||++|++.|..+++.+++.++++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999999888888886 445557788888899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 80 ~~~~~~ 85 (174)
T cd04135 80 SVVNPA 85 (174)
T ss_pred ECCCHH
Confidence 999864
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.89 E-value=2.6e-22 Score=123.88 Aligned_cols=86 Identities=56% Similarity=0.896 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|+++||||||++++.++.+...+.|+.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988778899988888778888888899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (161)
T cd01863 81 DVTRRD 86 (161)
T ss_pred ECCCHH
Confidence 998754
No 85
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.88 E-value=2.5e-22 Score=124.52 Aligned_cols=80 Identities=26% Similarity=0.359 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+.+|+.+.|.+.+.|+.+ .+...+.++++.+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~--~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG--RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999999877766643 3457788999999999999999975 35778999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 74 d~~~~~s 80 (158)
T cd04103 74 SLENEAS 80 (158)
T ss_pred ECCCHHH
Confidence 9999764
No 86
>KOG0083|consensus
Probab=99.88 E-value=4.2e-24 Score=127.30 Aligned_cols=84 Identities=46% Similarity=0.856 Sum_probs=78.3
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEec
Q psy5771 25 VLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEIL 103 (108)
Q Consensus 25 ~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~di 103 (108)
+++|++++|||+|+-||..+.|.. ....|+|+++..+.+..+++.+++++||++|||+|+.....||+++|+++++|||
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 479999999999999999988854 4668999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy5771 104 CFYGT 108 (108)
Q Consensus 104 t~~~s 108 (108)
+|+-|
T Consensus 81 ankas 85 (192)
T KOG0083|consen 81 ANKAS 85 (192)
T ss_pred ccchh
Confidence 99865
No 87
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.88 E-value=2.6e-22 Score=130.41 Aligned_cols=82 Identities=38% Similarity=0.618 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|+++||||||+++|+.++|.. +.||++.++....+ ..+.+.+||++|++.|..+++.+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999975 67898876654433 4678999999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 76 Dvt~~~S 82 (220)
T cd04126 76 DVSNVQS 82 (220)
T ss_pred ECCCHHH
Confidence 9998653
No 88
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.88 E-value=2.8e-22 Score=125.28 Aligned_cols=85 Identities=29% Similarity=0.530 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
.||+++|++|||||||+++|.++.|.+.+.||.+..+ ...+.++++.+.+.+||++|++.|..+++.+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999999888989987544 356778888899999999999999999889999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 ~~~~~~ 86 (175)
T cd01870 81 SIDSPD 86 (175)
T ss_pred ECCCHH
Confidence 999754
No 89
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.88 E-value=3.1e-22 Score=124.69 Aligned_cols=85 Identities=33% Similarity=0.542 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|.++.+...+.|+.+. .+.+.+.+++..+.+++||++|+++|..+++.+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 69999999999999999999999998888898874 44677788888899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 ~~~~~~ 86 (168)
T cd04177 81 SVTSEA 86 (168)
T ss_pred ECCCHH
Confidence 998754
No 90
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=8.2e-22 Score=122.50 Aligned_cols=89 Identities=65% Similarity=1.046 Sum_probs=81.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++..+.+.+.+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999998888878899988888888899998899999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 85 ~v~d~~~~~ 93 (169)
T cd04114 85 LTYDITCEE 93 (169)
T ss_pred EEEECcCHH
Confidence 999998753
No 91
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.88 E-value=3.2e-22 Score=128.15 Aligned_cols=87 Identities=24% Similarity=0.343 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc--------chHhhccc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT--------ITQSYYRS 93 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~~~~~~~ 93 (108)
+||+++|++|||||||+++|.+++|...+.|+.+.+++...+.++++.+.+++||++|.+.+.. ....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888999998777777778899899999999999754421 23345889
Q ss_pred CcEEEEEEeccccCC
Q psy5771 94 ANGVIIGEILCFYGT 108 (108)
Q Consensus 94 ~~~~i~v~dit~~~s 108 (108)
+|++|+|||+++..|
T Consensus 81 ad~iilv~D~~~~~S 95 (198)
T cd04142 81 SRAFILVYDICSPDS 95 (198)
T ss_pred CCEEEEEEECCCHHH
Confidence 999999999998653
No 92
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.88 E-value=2.3e-22 Score=124.58 Aligned_cols=81 Identities=26% Similarity=0.541 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|+++||||||++++..+++.. +.||++.++ ..+.. ..+.+.+||++|++++..+++.+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~--~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 489999999999999999999888874 788988554 33444 3578999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 76 D~~~~~ 81 (159)
T cd04150 76 DSNDRE 81 (159)
T ss_pred eCCCHH
Confidence 999864
No 93
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=4e-22 Score=126.00 Aligned_cols=84 Identities=25% Similarity=0.503 Sum_probs=72.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|+++||||||++++..+++.. +.||++.++ ..+.. ..+.+++||++|+++++.+|+.+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~--~~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 345899999999999999999999888864 679988554 34444 3578999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||++++.
T Consensus 90 ~V~D~s~~~ 98 (181)
T PLN00223 90 FVVDSNDRD 98 (181)
T ss_pred EEEeCCcHH
Confidence 999999865
No 94
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.88 E-value=2.8e-22 Score=125.95 Aligned_cols=83 Identities=27% Similarity=0.491 Sum_probs=71.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||++++..+++. .+.||++.++. .+.. ..+.+.+||++|++++..+++.|+++++++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999988875 47789886554 3444 35789999999999999999999999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+|+..
T Consensus 87 v~D~t~~~ 94 (175)
T smart00177 87 VVDSNDRD 94 (175)
T ss_pred EEECCCHH
Confidence 99999864
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.87 E-value=9.7e-22 Score=120.94 Aligned_cols=86 Identities=47% Similarity=0.726 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||++|++.+..+++.+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 59999999999999999999999988777778776777777888888889999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (162)
T cd04123 81 DITDAD 86 (162)
T ss_pred ECCCHH
Confidence 998864
No 96
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=5.3e-22 Score=126.88 Aligned_cols=86 Identities=24% Similarity=0.322 Sum_probs=68.4
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHcC-----CccccccCceee-eeEEEE--------EEECCeEEEEEEeeCCChhhhcc
Q psy5771 21 LFKVVLIGDCGVGKTCVVH-RFRSG-----DFVEKTGNTIGV-DFSMKT--------VNIDGKKVKLQIWDTAGQERFRT 85 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~-~~~~~-----~~~~~~~~t~~~-~~~~~~--------~~~~~~~~~l~l~D~~g~~~~~~ 85 (108)
.+||+++|++|||||||+. ++.++ .|.+++.||++. +.+... +.++++.+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 56544 456678899863 333322 25688999999999999986 3
Q ss_pred chHhhcccCcEEEEEEeccccCC
Q psy5771 86 ITQSYYRSANGVIIGEILCFYGT 108 (108)
Q Consensus 86 ~~~~~~~~~~~~i~v~dit~~~s 108 (108)
+.+.+++++|++|+|||++++.|
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~S 102 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNS 102 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhH
Confidence 56778999999999999999764
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=4e-22 Score=124.59 Aligned_cols=82 Identities=28% Similarity=0.521 Sum_probs=70.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|+++||||||++++..+++.. +.||.+.++. .+.. ..+.+++||++|++++..+++.+++++|++|+|
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999888764 6788886553 3443 457899999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 84 ~D~t~~~ 90 (168)
T cd04149 84 VDSADRD 90 (168)
T ss_pred EeCCchh
Confidence 9999864
No 98
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.87 E-value=6.3e-22 Score=125.19 Aligned_cols=82 Identities=29% Similarity=0.541 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|+++||||||++++..+++.. +.||.+.++. .+.. ..+.+++||++|+++++.+++.+++++|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999888865 6788885543 4444 357899999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 92 ~D~t~~~ 98 (182)
T PTZ00133 92 VDSNDRE 98 (182)
T ss_pred EeCCCHH
Confidence 9999864
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.87 E-value=4.3e-22 Score=123.99 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=70.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
.|+++|++|||||||+++|.++.+...+.||.+.+. . .+++..+++.+||++|++++..+++.+++++|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999988888899998543 2 334456889999999999999999999999999999999
Q ss_pred ccccC
Q psy5771 103 LCFYG 107 (108)
Q Consensus 103 it~~~ 107 (108)
+++..
T Consensus 77 ~t~~~ 81 (164)
T cd04162 77 SADSE 81 (164)
T ss_pred CCCHH
Confidence 98753
No 100
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.87 E-value=2.7e-21 Score=124.75 Aligned_cols=85 Identities=42% Similarity=0.688 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|.++.+.+.+.++++..+........+..+++.+||++|+++|+.+++.|+++++++++||
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999999999999999999999999999988777777776666899999999999999999999999999999999
Q ss_pred ecccc
Q psy5771 102 ILCFY 106 (108)
Q Consensus 102 dit~~ 106 (108)
|+++.
T Consensus 86 d~~~~ 90 (219)
T COG1100 86 DSTLR 90 (219)
T ss_pred ecccc
Confidence 99983
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.86 E-value=1.3e-21 Score=123.74 Aligned_cols=85 Identities=27% Similarity=0.482 Sum_probs=73.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEE-CCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
.+||+++|++|||||||++++..+++... .||.+.+.....+.+ ++..+.+.+||++|++++..+++.+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999999888754 688886666555554 3467889999999999999999999999999999
Q ss_pred EEecccc
Q psy5771 100 GEILCFY 106 (108)
Q Consensus 100 v~dit~~ 106 (108)
|||+++.
T Consensus 82 v~D~~~~ 88 (183)
T cd04152 82 VVDSVDV 88 (183)
T ss_pred EEECCCH
Confidence 9999875
No 102
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.86 E-value=1.8e-21 Score=126.47 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcc-cCcEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR-SANGVII 99 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~-~~~~~i~ 99 (108)
+||+++|++|||||||+++|..+++. ..+.++.+.+++.+.+.+++..+.+.+||++|++ ..+...+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999998886 6777888667888888898889999999999998 334556777 9999999
Q ss_pred EEeccccCC
Q psy5771 100 GEILCFYGT 108 (108)
Q Consensus 100 v~dit~~~s 108 (108)
|||+++..|
T Consensus 79 V~d~td~~S 87 (221)
T cd04148 79 VYSVTDRSS 87 (221)
T ss_pred EEECCCHHH
Confidence 999998643
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.86 E-value=4.5e-21 Score=119.16 Aligned_cols=85 Identities=34% Similarity=0.554 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|.++.+...+.|+.. +.....+..++..+.+++||++|++++...++.+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998777778875 445566677888999999999999999888899999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 80 d~~~~~ 85 (171)
T cd00157 80 SVDSPS 85 (171)
T ss_pred ECCCHH
Confidence 998853
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.86 E-value=4.6e-21 Score=116.99 Aligned_cols=85 Identities=62% Similarity=0.960 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888899998888888888888899999999999999999999999999999999
Q ss_pred ecccc
Q psy5771 102 ILCFY 106 (108)
Q Consensus 102 dit~~ 106 (108)
|+++.
T Consensus 81 d~~~~ 85 (159)
T cd00154 81 DITNR 85 (159)
T ss_pred ECCCH
Confidence 99874
No 105
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.86 E-value=1.8e-21 Score=120.83 Aligned_cols=84 Identities=30% Similarity=0.443 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh-hccchHhhcccCcEEEEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-FRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~~~~~~~~~~i~v~ 101 (108)
||+++|++|||||||+++++.+.+...+.|+.+.. +...+.++++.+.+++||++|++. +......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999999887888887533 456677888899999999999985 3456778999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 80 d~~~~~ 85 (165)
T cd04146 80 SITDRS 85 (165)
T ss_pred ECCCHH
Confidence 999864
No 106
>KOG0395|consensus
Probab=99.86 E-value=1.3e-21 Score=125.14 Aligned_cols=88 Identities=35% Similarity=0.551 Sum_probs=83.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+|++++|.+|||||+|..+|.++.|.+.|.||++ +.+.+.+.+++..+.+.|+|++|+++|..+...|+++++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999998 7888999999999999999999999999999999999999999
Q ss_pred EEeccccCC
Q psy5771 100 GEILCFYGT 108 (108)
Q Consensus 100 v~dit~~~s 108 (108)
||++|++.|
T Consensus 81 Vysitd~~S 89 (196)
T KOG0395|consen 81 VYSITDRSS 89 (196)
T ss_pred EEECCCHHH
Confidence 999999875
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=5.3e-21 Score=118.97 Aligned_cols=84 Identities=24% Similarity=0.276 Sum_probs=69.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||+++|..+.+...+.++.. .......+++..+++.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999999766544332 23344556677899999999999988888888899999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 79 d~~~~~ 84 (166)
T cd01893 79 SVDRPS 84 (166)
T ss_pred ECCCHH
Confidence 999864
No 108
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.85 E-value=4.3e-21 Score=122.69 Aligned_cols=83 Identities=24% Similarity=0.402 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|++|||||||+++|+.+.+...+.++.. ++....+.+++..+.+++||++|++.|..+++.+++++|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999999888888875 5666778888888999999999999999999999999999999999
Q ss_pred cccc
Q psy5771 103 LCFY 106 (108)
Q Consensus 103 it~~ 106 (108)
+++.
T Consensus 80 ~~~~ 83 (198)
T cd04147 80 VDDP 83 (198)
T ss_pred CCCH
Confidence 9875
No 109
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.85 E-value=8.7e-21 Score=118.35 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
+|+++|+++||||||++++.++ +...+.||++.. ...+..+ .+.+++||++|+++++.+++.|+++++++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 777788999844 4455554 4778999999999999999999999999999999
Q ss_pred ccccC
Q psy5771 103 LCFYG 107 (108)
Q Consensus 103 it~~~ 107 (108)
+++..
T Consensus 76 ~s~~~ 80 (167)
T cd04161 76 SSDDD 80 (167)
T ss_pred CCchh
Confidence 99864
No 110
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.84 E-value=1.1e-20 Score=117.96 Aligned_cols=80 Identities=29% Similarity=0.562 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|+++||||||++++.++.+.. +.||.+.++. .+.. ..+.+.+||++|++++...+..+++.+|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999988764 7788885553 3444 35789999999999999999999999999999999
Q ss_pred ccccC
Q psy5771 103 LCFYG 107 (108)
Q Consensus 103 it~~~ 107 (108)
+++..
T Consensus 76 ~s~~~ 80 (169)
T cd04158 76 SSHRD 80 (169)
T ss_pred CCcHH
Confidence 99864
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.84 E-value=1.2e-20 Score=118.04 Aligned_cols=86 Identities=24% Similarity=0.433 Sum_probs=71.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.....+||+++|++|||||||++++.++.+ ..+.||.+ +....+.++ .+.+.+||++|++.++.++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 344568999999999999999999998755 45778887 444455565 4678999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+++|||+++..
T Consensus 85 ~i~v~d~~~~~ 95 (173)
T cd04154 85 LIWVVDSSDRL 95 (173)
T ss_pred EEEEEECCCHH
Confidence 99999998753
No 112
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.84 E-value=1.3e-20 Score=111.25 Aligned_cols=85 Identities=33% Similarity=0.577 Sum_probs=66.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc--ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFV--EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
||+|+|++|||||||+++|+++.+. ..+.++.+.+..............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 12223333344445566666776799999999999998888889999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 81 ~D~s~~~ 87 (119)
T PF08477_consen 81 YDLSDPE 87 (119)
T ss_dssp EECCGHH
T ss_pred EcCCChH
Confidence 9999864
No 113
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.84 E-value=2.3e-20 Score=115.07 Aligned_cols=85 Identities=35% Similarity=0.534 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||++++..+++...+.++.+. .+.+....++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999999998888888763 44566778888899999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 80 d~~~~~ 85 (164)
T cd04139 80 SITDME 85 (164)
T ss_pred ECCCHH
Confidence 998743
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.84 E-value=2.2e-20 Score=114.65 Aligned_cols=84 Identities=39% Similarity=0.587 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|++|||||||++++.++.+...+.++.+ +.+......++..+.+++||++|++.+..++..+++.++++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 699999999999999999999888888888877 5666777788788999999999999999999999999999999999
Q ss_pred ccccC
Q psy5771 103 LCFYG 107 (108)
Q Consensus 103 it~~~ 107 (108)
+++..
T Consensus 80 ~~~~~ 84 (160)
T cd00876 80 ITDRE 84 (160)
T ss_pred CCCHH
Confidence 98754
No 115
>KOG4252|consensus
Probab=99.84 E-value=1.2e-22 Score=126.22 Aligned_cols=96 Identities=32% Similarity=0.578 Sum_probs=89.3
Q ss_pred CCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcc
Q psy5771 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92 (108)
Q Consensus 13 ~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~ 92 (108)
....+.+..+|++++|..+|||+|+|+||+.+-|.+.|..|+|.++..+.+++.++.+.+.+||++|+++|..+.+.|||
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 34556778899999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred cCcEEEEEEeccccCC
Q psy5771 93 SANGVIIGEILCFYGT 108 (108)
Q Consensus 93 ~~~~~i~v~dit~~~s 108 (108)
+|++.++||+-|+.-|
T Consensus 92 gaqa~vLVFSTTDr~S 107 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYS 107 (246)
T ss_pred cccceEEEEecccHHH
Confidence 9999999999998654
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.83 E-value=2.1e-20 Score=115.24 Aligned_cols=81 Identities=17% Similarity=0.362 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-ccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD-FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+|+++|+++||||||++++..+. +...+.||.+... ..+.. ..+.+.+||++|++++..++..+++.++++++||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999876 4566788988443 23333 4577899999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 77 D~~~~~ 82 (162)
T cd04157 77 DSSDRL 82 (162)
T ss_pred eCCcHH
Confidence 998753
No 117
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.83 E-value=3.8e-20 Score=116.26 Aligned_cols=85 Identities=31% Similarity=0.453 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
.||+++|++|||||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+||++|++++..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5999999999999999999999998877888876444 566677777888999999999999999999999999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 d~~~~~ 86 (180)
T cd04137 81 SVTSRK 86 (180)
T ss_pred ECCCHH
Confidence 999754
No 118
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.82 E-value=2.1e-19 Score=113.91 Aligned_cols=85 Identities=33% Similarity=0.568 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
.||+++|++|+|||||++++..+.+.+.+.++....+ ...+.+++..+.+.+||++|++.+....+.+++.++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5999999999999999999999988888888876444 456677888899999999999999888888899999999999
Q ss_pred eccccC
Q psy5771 102 ILCFYG 107 (108)
Q Consensus 102 dit~~~ 107 (108)
|+++..
T Consensus 81 ~i~~~~ 86 (187)
T cd04129 81 AVDTPD 86 (187)
T ss_pred ECCCHH
Confidence 998764
No 119
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.82 E-value=1.8e-19 Score=113.44 Aligned_cols=84 Identities=35% Similarity=0.605 Sum_probs=73.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
.+..+||+++|..++|||||++++..+++.. ..||.| +....+.+++ +.+.+||.+|+..++.+|+.|+++++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 4677999999999999999999999887654 779998 5556677765 5689999999999999999999999999
Q ss_pred EEEEecccc
Q psy5771 98 IIGEILCFY 106 (108)
Q Consensus 98 i~v~dit~~ 106 (108)
|+|.|.++.
T Consensus 86 IfVvDssd~ 94 (175)
T PF00025_consen 86 IFVVDSSDP 94 (175)
T ss_dssp EEEEETTGG
T ss_pred EEEEecccc
Confidence 999999875
No 120
>KOG0073|consensus
Probab=99.82 E-value=8.5e-20 Score=111.76 Aligned_cols=85 Identities=27% Similarity=0.486 Sum_probs=74.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
..+..++|+++|..|+||||++++|.+.. .+...||.| |..+.+.+++ +++++||.+||..++..|+.||..+|+
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 34568999999999999999999999776 556789999 6666777754 779999999999999999999999999
Q ss_pred EEEEEecccc
Q psy5771 97 VIIGEILCFY 106 (108)
Q Consensus 97 ~i~v~dit~~ 106 (108)
+|+|+|.++.
T Consensus 87 lIwvvDssD~ 96 (185)
T KOG0073|consen 87 LIWVVDSSDR 96 (185)
T ss_pred EEEEEECchH
Confidence 9999999764
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.81 E-value=9.6e-20 Score=114.26 Aligned_cols=82 Identities=28% Similarity=0.506 Sum_probs=70.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|+++||||||++++..+++.. +.||.+.++ ..+.++ .+.+.+||++|++.+...++.+++++|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999999988875 678887554 344444 47799999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 90 ~D~s~~~ 96 (174)
T cd04153 90 IDSTDRE 96 (174)
T ss_pred EECCCHH
Confidence 9998753
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=2.3e-19 Score=113.61 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=69.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|.+|||||||++++.++.+.. +.||.+.. ...+.+++ +++.+||++|++.++.++..+++++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 455899999999999999999999887653 56776633 33444543 67899999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|+|+++.+
T Consensus 90 ~vvD~~~~~ 98 (184)
T smart00178 90 YLVDAYDKE 98 (184)
T ss_pred EEEECCcHH
Confidence 999998764
No 123
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.81 E-value=2e-19 Score=110.88 Aligned_cols=81 Identities=25% Similarity=0.513 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|++|||||||+++|.++++.. +.||.+.++ ..+... ..+.+.+||++|++.+...+..+++.++++++|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999998865 468887443 344443 45789999999999999999999999999999999
Q ss_pred ccccC
Q psy5771 103 LCFYG 107 (108)
Q Consensus 103 it~~~ 107 (108)
.++..
T Consensus 77 ~~~~~ 81 (160)
T cd04156 77 SSDEA 81 (160)
T ss_pred CCcHH
Confidence 98753
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.81 E-value=2.1e-19 Score=109.77 Aligned_cols=80 Identities=31% Similarity=0.520 Sum_probs=70.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
.|+++|++|||||||++++.+.++...+.|+.+.++. .+..++ +.+.+||++|++.+..++..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3799999999999999999999999999999986554 344443 779999999999999999999999999999999
Q ss_pred cccc
Q psy5771 103 LCFY 106 (108)
Q Consensus 103 it~~ 106 (108)
+++.
T Consensus 77 ~~~~ 80 (159)
T cd04159 77 AADR 80 (159)
T ss_pred CCCH
Confidence 9874
No 125
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.81 E-value=8.6e-20 Score=112.60 Aligned_cols=79 Identities=30% Similarity=0.508 Sum_probs=67.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|+++||||||++++..+.+.. +.||++.++. .+.. ..+.+++||++|++.+..+++.+++.++++++|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998887764 5688875543 3444 34779999999999999999999999999999999
Q ss_pred cccc
Q psy5771 103 LCFY 106 (108)
Q Consensus 103 it~~ 106 (108)
+++.
T Consensus 76 ~~~~ 79 (158)
T cd04151 76 STDR 79 (158)
T ss_pred CCCH
Confidence 9875
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=3.9e-19 Score=112.60 Aligned_cols=84 Identities=18% Similarity=0.330 Sum_probs=71.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++.++.+. .+.||.+. ....+.+++ +.+.+||++|++.+..++..+++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 44689999999999999999999988874 47778764 344566665 56889999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|+|+++.+
T Consensus 92 lV~D~~~~~ 100 (190)
T cd00879 92 FLVDAADPE 100 (190)
T ss_pred EEEECCcHH
Confidence 999998753
No 127
>KOG0070|consensus
Probab=99.80 E-value=8.9e-20 Score=113.51 Aligned_cols=84 Identities=25% Similarity=0.514 Sum_probs=75.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
.....+|+++|..++||||+++++..+++... .||+| +..+.+++. .+.+.+||.+||++++.+|+.|+++++++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 34568999999999999999999999998764 89999 777788886 57899999999999999999999999999
Q ss_pred EEEEecccc
Q psy5771 98 IIGEILCFY 106 (108)
Q Consensus 98 i~v~dit~~ 106 (108)
|+|.|-+++
T Consensus 89 IfVvDS~Dr 97 (181)
T KOG0070|consen 89 IFVVDSSDR 97 (181)
T ss_pred EEEEeCCcH
Confidence 999998875
No 128
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.79 E-value=3.4e-19 Score=109.71 Aligned_cols=79 Identities=29% Similarity=0.573 Sum_probs=67.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
||+++|.+|||||||++++.++.+ ..+.++.+.+. ..+.++ .+.+.+||++|++.+...++.+++.++++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999884 45678887444 344554 4679999999999999999999999999999999
Q ss_pred cccc
Q psy5771 103 LCFY 106 (108)
Q Consensus 103 it~~ 106 (108)
+++.
T Consensus 76 ~~~~ 79 (158)
T cd00878 76 SSDR 79 (158)
T ss_pred CCCH
Confidence 9975
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=3e-18 Score=104.07 Aligned_cols=85 Identities=28% Similarity=0.518 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|.+|+|||||++++..+.++..+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+++++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999999888788888888887777888887788999999999999999999999999999999
Q ss_pred ecccc
Q psy5771 102 ILCFY 106 (108)
Q Consensus 102 dit~~ 106 (108)
|++..
T Consensus 82 d~~~~ 86 (161)
T TIGR00231 82 DIVIL 86 (161)
T ss_pred EEeee
Confidence 98754
No 130
>KOG1673|consensus
Probab=99.78 E-value=5.5e-19 Score=107.70 Aligned_cols=93 Identities=28% Similarity=0.440 Sum_probs=87.4
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
..+....+||-++|++.+|||||+-.|.++++.+++..+.|+++..+.+.+.+..+.+.+||..|++++..+.+-..+++
T Consensus 14 a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~ds 93 (205)
T KOG1673|consen 14 AVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDS 93 (205)
T ss_pred ccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCc
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccccC
Q psy5771 95 NGVIIGEILCFYG 107 (108)
Q Consensus 95 ~~~i~v~dit~~~ 107 (108)
-+++|+||+|.+.
T Consensus 94 vaIlFmFDLt~r~ 106 (205)
T KOG1673|consen 94 VAILFMFDLTRRS 106 (205)
T ss_pred EEEEEEEecCchH
Confidence 9999999999763
No 131
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=1.2e-18 Score=108.06 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=65.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC------ccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD------FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
+|+++|++|||||||++++.... ....+.||.+.++ ..+.++ ...+.+||++|++.+..++..+++.+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 58999999999999999987532 2334567777554 345555 4678999999999999999999999999
Q ss_pred EEEEEecccc
Q psy5771 97 VIIGEILCFY 106 (108)
Q Consensus 97 ~i~v~dit~~ 106 (108)
+++|+|.++.
T Consensus 77 ~v~vvd~~~~ 86 (167)
T cd04160 77 IIYVIDSTDR 86 (167)
T ss_pred EEEEEECchH
Confidence 9999999875
No 132
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.77 E-value=1.3e-18 Score=110.90 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=68.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCccccc------------cCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS--GDFVEKT------------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQ 88 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~ 88 (108)
+|+++|+++||||||+++|+. +.+...+ .++.+.++......+..+.+.+.+||++|+++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 899999999999999999997 5554432 23455555555555555667899999999999999999
Q ss_pred hhcccCcEEEEEEeccc
Q psy5771 89 SYYRSANGVIIGEILCF 105 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~ 105 (108)
.+++.+|++++|||+++
T Consensus 84 ~~~~~~d~~ilV~d~~~ 100 (194)
T cd01891 84 RVLSMVDGVLLLVDASE 100 (194)
T ss_pred HHHHhcCEEEEEEECCC
Confidence 99999999999999986
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.77 E-value=3.2e-18 Score=107.26 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=64.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-------ccccccCc------eeeeeEEEEEEE-----CCeEEEEEEeeCCChhhhc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD-------FVEKTGNT------IGVDFSMKTVNI-----DGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~-------~~~~~~~t------~~~~~~~~~~~~-----~~~~~~l~l~D~~g~~~~~ 84 (108)
+|+++|+.+||||||+++|++.. +...+.++ .|.++....+.. +++.+.+.+||++|++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998732 22223332 233444333332 5678889999999999999
Q ss_pred cchHhhcccCcEEEEEEecccc
Q psy5771 85 TITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 85 ~~~~~~~~~~~~~i~v~dit~~ 106 (108)
..+..+++.+|++|+|||+++.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~ 103 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQG 103 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCC
Confidence 9999999999999999999874
No 134
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.76 E-value=5.1e-18 Score=104.57 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=61.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC---CccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG---DFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
.|+++|+++||||||++++.+. .+..++.++...+.....+.+.+ ...+.+||++|+++|......+++++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999863 34433333333334334455542 3578999999999997777778899999999
Q ss_pred EEeccc
Q psy5771 100 GEILCF 105 (108)
Q Consensus 100 v~dit~ 105 (108)
|+|+++
T Consensus 81 V~d~~~ 86 (164)
T cd04171 81 VVAADE 86 (164)
T ss_pred EEECCC
Confidence 999975
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.75 E-value=1.1e-17 Score=104.37 Aligned_cols=82 Identities=27% Similarity=0.421 Sum_probs=68.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||++++.+..+. .+.|+.+.+ ...+..++ ..+.+||++|+..+...+..+++.++++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 3689999999999999999999988764 366787743 34555554 568899999999998899999999999999
Q ss_pred EEecccc
Q psy5771 100 GEILCFY 106 (108)
Q Consensus 100 v~dit~~ 106 (108)
|+|+++.
T Consensus 88 v~D~~~~ 94 (173)
T cd04155 88 VIDSADK 94 (173)
T ss_pred EEeCCCH
Confidence 9999874
No 136
>KOG0071|consensus
Probab=99.74 E-value=1.1e-17 Score=100.40 Aligned_cols=82 Identities=29% Similarity=0.541 Sum_probs=72.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
+.++|+++|..++||||+++.+.-++.. ...||+| |..+.+.+ +++++++||.+|+++.+.+|++||.+..++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 3689999999999999999999988754 4679999 77778877 45889999999999999999999999999999
Q ss_pred EEecccc
Q psy5771 100 GEILCFY 106 (108)
Q Consensus 100 v~dit~~ 106 (108)
|.|-.+.
T Consensus 91 V~Dsa~~ 97 (180)
T KOG0071|consen 91 VVDSADR 97 (180)
T ss_pred EEeccch
Confidence 9997654
No 137
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.72 E-value=4.8e-17 Score=100.75 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC-CeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
.|+++|++|+|||||++++..+++.....+....+.....+..+ +....+.+||++|++.|..++..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999988766544444333333344443 13567899999999999989999999999999999
Q ss_pred eccc
Q psy5771 102 ILCF 105 (108)
Q Consensus 102 dit~ 105 (108)
|.++
T Consensus 82 d~~~ 85 (168)
T cd01887 82 AADD 85 (168)
T ss_pred ECCC
Confidence 9986
No 138
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.72 E-value=5.7e-17 Score=104.25 Aligned_cols=83 Identities=18% Similarity=0.365 Sum_probs=65.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC-cEEEEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA-NGVIIGE 101 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 101 (108)
+|+++|+++||||+|+++|..+++...+.++ ............++...+.+||+||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999999887665443 2222222222123456799999999999998889999999 9999999
Q ss_pred ecccc
Q psy5771 102 ILCFY 106 (108)
Q Consensus 102 dit~~ 106 (108)
|.++.
T Consensus 81 D~~~~ 85 (203)
T cd04105 81 DSATF 85 (203)
T ss_pred ECccc
Confidence 99875
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.71 E-value=2.8e-17 Score=99.70 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=54.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh-----hhccchHhhcccCcEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-----RFRTITQSYYRSANGV 97 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~-----~~~~~~~~~~~~~~~~ 97 (108)
||+++|++|||||||+++|.++.+ .+.+|.+.++. . .+||++|+. .+..+.+ .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999998875 24456553332 1 589999972 3444433 58899999
Q ss_pred EEEEeccccCC
Q psy5771 98 IIGEILCFYGT 108 (108)
Q Consensus 98 i~v~dit~~~s 108 (108)
++|||+++..|
T Consensus 67 ilv~d~~~~~s 77 (142)
T TIGR02528 67 ALVQSATDPES 77 (142)
T ss_pred EEEecCCCCCc
Confidence 99999998754
No 140
>KOG0074|consensus
Probab=99.71 E-value=9.5e-17 Score=96.62 Aligned_cols=84 Identities=29% Similarity=0.446 Sum_probs=74.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
.+..+||+++|..++|||||++++..... ....||.| |..+.+.+++ .+.+++||.+||...+..|..||.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence 36679999999999999999999987764 45779999 7778888876 57899999999999999999999999999
Q ss_pred EEEEeccc
Q psy5771 98 IIGEILCF 105 (108)
Q Consensus 98 i~v~dit~ 105 (108)
|+|.|-++
T Consensus 90 IyVIDS~D 97 (185)
T KOG0074|consen 90 IYVIDSTD 97 (185)
T ss_pred EEEEeCCc
Confidence 99999554
No 141
>KOG0096|consensus
Probab=99.70 E-value=8.2e-17 Score=100.85 Aligned_cols=88 Identities=32% Similarity=0.539 Sum_probs=79.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+|++++|+.|.|||++++|.+.++|...+.+|+|.+.+.....-+...+++..||+.|+|.+..+.+.||-++.+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45789999999999999999999999999999999998887666555545699999999999999999999999999999
Q ss_pred EEEecccc
Q psy5771 99 IGEILCFY 106 (108)
Q Consensus 99 ~v~dit~~ 106 (108)
++||+|.+
T Consensus 88 imFdVtsr 95 (216)
T KOG0096|consen 88 IMFDVTSR 95 (216)
T ss_pred EEeeeeeh
Confidence 99999854
No 142
>KOG0075|consensus
Probab=99.68 E-value=3e-17 Score=99.24 Aligned_cols=83 Identities=28% Similarity=0.496 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
...+.++|..++|||||.+....+++.+...||.| +..+.++- ..+.+.+||.+||.+|+.+|+.|+|.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tk--gnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEecc--CceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 46899999999999999999999999999999999 55555543 457789999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
.|-.+.+
T Consensus 96 VDaad~~ 102 (186)
T KOG0075|consen 96 VDAADPD 102 (186)
T ss_pred eecCCcc
Confidence 9988765
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=97.68 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=59.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC-----------hhhhccch
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG-----------QERFRTIT 87 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g-----------~~~~~~~~ 87 (108)
...++|+++|.+|||||||++++.++.+...+.|... +....+.++ .+.+||++| +++++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3457999999999999999999999887655555443 444444443 488999999 67787777
Q ss_pred Hhhcc-c---CcEEEEEEecc
Q psy5771 88 QSYYR-S---ANGVIIGEILC 104 (108)
Q Consensus 88 ~~~~~-~---~~~~i~v~dit 104 (108)
..+++ . ++++++|.|.+
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~ 101 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGK 101 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCc
Confidence 77765 3 46777777764
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.64 E-value=1.9e-15 Score=90.71 Aligned_cols=80 Identities=53% Similarity=0.895 Sum_probs=68.9
Q ss_pred EEcCCCCCHHHHHHHHHcCCc-cccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecc
Q psy5771 26 LIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 26 lvG~~~vGKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
++|++|+|||||++++..... .....++. .+.........+....+.+||++|+..+...+..+++.++++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 55555666 6777777777777889999999999988888888999999999999998
Q ss_pred cc
Q psy5771 105 FY 106 (108)
Q Consensus 105 ~~ 106 (108)
+.
T Consensus 80 ~~ 81 (157)
T cd00882 80 DR 81 (157)
T ss_pred CH
Confidence 74
No 145
>KOG4423|consensus
Probab=99.64 E-value=4.5e-19 Score=110.77 Aligned_cols=92 Identities=43% Similarity=0.714 Sum_probs=82.7
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCe-EEEEEEeeCCChhhhccchHhhccc
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK-KVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
+...+..+|++|+|+.|||||++++++.+..|...|..|+|.++..+.+..+++ .++++|||..||++|..+..-||+.
T Consensus 19 p~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyke 98 (229)
T KOG4423|consen 19 PKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKE 98 (229)
T ss_pred CchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecC
Confidence 333567799999999999999999999999999999999999998877777654 5789999999999999999999999
Q ss_pred CcEEEEEEecccc
Q psy5771 94 ANGVIIGEILCFY 106 (108)
Q Consensus 94 ~~~~i~v~dit~~ 106 (108)
+++..+|||+|+-
T Consensus 99 a~~~~iVfdvt~s 111 (229)
T KOG4423|consen 99 AHGAFIVFDVTRS 111 (229)
T ss_pred CcceEEEEEcccc
Confidence 9999999999974
No 146
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.63 E-value=3.7e-15 Score=105.34 Aligned_cols=86 Identities=21% Similarity=0.206 Sum_probs=65.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCc--cccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc--------hH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQ 88 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~ 88 (108)
...+||+++|++|||||||++++.+... ...+ |....++....+.+++.. +.+|||+|+..+... ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHH
Confidence 3458999999999999999999998753 3333 444466777778887754 689999998654432 24
Q ss_pred hhcccCcEEEEEEeccccC
Q psy5771 89 SYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~~~ 107 (108)
.+++.+|++++|||+++..
T Consensus 278 ~~~~~aD~il~V~D~s~~~ 296 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPL 296 (442)
T ss_pred HHHhhCCEEEEEEECCCCC
Confidence 5789999999999998754
No 147
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.63 E-value=1.8e-15 Score=92.75 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=61.0
Q ss_pred EEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc------chHhhcc--cCcEE
Q psy5771 26 LIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT------ITQSYYR--SANGV 97 (108)
Q Consensus 26 lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~~--~~~~~ 97 (108)
|+|.+|||||||++++.+..+.....+....+.....+.+++ ..+.+||++|++.+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998865444445555556666677765 4689999999987764 3566665 89999
Q ss_pred EEEEecccc
Q psy5771 98 IIGEILCFY 106 (108)
Q Consensus 98 i~v~dit~~ 106 (108)
++|+|.++.
T Consensus 79 i~v~d~~~~ 87 (158)
T cd01879 79 VNVVDATNL 87 (158)
T ss_pred EEEeeCCcc
Confidence 999999864
No 148
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.63 E-value=2.4e-15 Score=96.33 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=59.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh---------hccchHh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER---------FRTITQS 89 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~ 89 (108)
+..++|+++|++|||||||++++.+..+.....+....+.....+.+.+. ..+.+||++|... +...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 44579999999999999999999988653322222222344444555443 3688999999732 22211 2
Q ss_pred hcccCcEEEEEEeccccC
Q psy5771 90 YYRSANGVIIGEILCFYG 107 (108)
Q Consensus 90 ~~~~~~~~i~v~dit~~~ 107 (108)
.+..+|++++|+|+++..
T Consensus 117 ~~~~~d~ii~v~D~~~~~ 134 (204)
T cd01878 117 EVAEADLLLHVVDASDPD 134 (204)
T ss_pred HHhcCCeEEEEEECCCCC
Confidence 367899999999998754
No 149
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.62 E-value=4.1e-15 Score=93.68 Aligned_cols=85 Identities=16% Similarity=0.303 Sum_probs=60.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh----------hhhccch
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRTIT 87 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~ 87 (108)
....++|+++|++|+|||||++++.+..+...+.++.+.+.....+..++ .+.+||++|. +.+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35668999999999999999999998875544555555433333333332 5889999994 3344445
Q ss_pred Hhhccc---CcEEEEEEeccc
Q psy5771 88 QSYYRS---ANGVIIGEILCF 105 (108)
Q Consensus 88 ~~~~~~---~~~~i~v~dit~ 105 (108)
..|++. ++++++|+|.+.
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~ 112 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRH 112 (179)
T ss_pred HHHHHhChhhcEEEEEecCCC
Confidence 566654 579999999875
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=4.2e-15 Score=105.90 Aligned_cols=84 Identities=20% Similarity=0.206 Sum_probs=62.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh--------hccchHhhc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--------FRTITQSYY 91 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~ 91 (108)
..+|+++|.+|||||||++++.++.+. ....|....+.....+.+++. .+.+||++|.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 369999999999999999999987642 223344444455555666664 478999999762 344556688
Q ss_pred ccCcEEEEEEecccc
Q psy5771 92 RSANGVIIGEILCFY 106 (108)
Q Consensus 92 ~~~~~~i~v~dit~~ 106 (108)
+.+|++|+|||+++.
T Consensus 116 ~~aD~il~VvD~~~~ 130 (472)
T PRK03003 116 RTADAVLFVVDATVG 130 (472)
T ss_pred HhCCEEEEEEECCCC
Confidence 999999999999874
No 151
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.62 E-value=2.8e-15 Score=93.02 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=53.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh----hhccchHhhcc---cCc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSYYR---SAN 95 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----~~~~~~~~~~~---~~~ 95 (108)
+|+++|.+|||||||++++.+........|....+.....+.+++ ...+.+||++|.. ....+...+++ .+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997653211111111122222333433 2468999999963 22334445444 599
Q ss_pred EEEEEEecccc
Q psy5771 96 GVIIGEILCFY 106 (108)
Q Consensus 96 ~~i~v~dit~~ 106 (108)
++++|+|+++.
T Consensus 81 ~vi~v~D~~~~ 91 (170)
T cd01898 81 LLLHVIDLSGD 91 (170)
T ss_pred EEEEEEecCCC
Confidence 99999999976
No 152
>PTZ00099 rab6; Provisional
Probab=99.61 E-value=3.1e-15 Score=94.34 Aligned_cols=64 Identities=41% Similarity=0.632 Sum_probs=59.7
Q ss_pred CCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 44 GDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 44 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
+.|.+++.||+|.++..+.+.+++..+++.|||++|++++..+++.++++||++|+|||+|+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~ 66 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ 66 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH
Confidence 5678889999999999888999999999999999999999999999999999999999999864
No 153
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.61 E-value=4.1e-15 Score=108.31 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-------ccccccC------ceeeeeEEEEEEE-----CCeEEEEEEeeCCChhhh
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGD-------FVEKTGN------TIGVDFSMKTVNI-----DGKKVKLQIWDTAGQERF 83 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~-------~~~~~~~------t~~~~~~~~~~~~-----~~~~~~l~l~D~~g~~~~ 83 (108)
-+|+++|+.++|||||+.+|+... +...+.. +.|.++....+.+ +++.+.+++|||+|+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999998642 2222222 2355555444433 466789999999999999
Q ss_pred ccchHhhcccCcEEEEEEecccc
Q psy5771 84 RTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
...+..+++.+|++|+|+|.++.
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g 106 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQG 106 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCC
Confidence 99999999999999999999863
No 154
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.60 E-value=8.4e-15 Score=92.97 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=61.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh----------hhhccch
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRTIT 87 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~ 87 (108)
.+..++|+++|++|||||||++++.++++...+.++.+.+........ ...+.+||++|. +.+..+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 346689999999999999999999988766566666664433322222 256899999993 4555566
Q ss_pred HhhcccC---cEEEEEEeccc
Q psy5771 88 QSYYRSA---NGVIIGEILCF 105 (108)
Q Consensus 88 ~~~~~~~---~~~i~v~dit~ 105 (108)
..+++.+ +++++++|.+.
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~ 118 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRH 118 (196)
T ss_pred HHHHHhCccceEEEEEEecCC
Confidence 6677655 57788888664
No 155
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.59 E-value=1.1e-14 Score=90.36 Aligned_cols=81 Identities=16% Similarity=0.074 Sum_probs=52.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccC--ceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc---------chHhhc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGN--TIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT---------ITQSYY 91 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~---------~~~~~~ 91 (108)
+|+++|++|||||||++++.++.+.....+ |.. .....+.. ..+.+++||++|+..... ......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS--LFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc--eeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 799999999999999999999876432111 222 22222222 347799999999742110 001111
Q ss_pred ccCcEEEEEEeccccC
Q psy5771 92 RSANGVIIGEILCFYG 107 (108)
Q Consensus 92 ~~~~~~i~v~dit~~~ 107 (108)
..+|++++|+|.++..
T Consensus 78 ~~~d~~l~v~d~~~~~ 93 (168)
T cd01897 78 HLRAAVLFLFDPSETC 93 (168)
T ss_pred hccCcEEEEEeCCccc
Confidence 2368999999998753
No 156
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.59 E-value=1.3e-14 Score=105.55 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=68.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
....+|+++|+.++|||||++++.+..+...+.+.+..+.....+.+++.. .+.+|||||++.|..++...++.+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 455799999999999999999999988766554444444444455554331 6889999999999999999999999999
Q ss_pred EEEeccc
Q psy5771 99 IGEILCF 105 (108)
Q Consensus 99 ~v~dit~ 105 (108)
+|+|.++
T Consensus 164 LVVda~d 170 (587)
T TIGR00487 164 LVVAADD 170 (587)
T ss_pred EEEECCC
Confidence 9999874
No 157
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.58 E-value=9.3e-15 Score=100.76 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh---------hhhccchHhh
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ---------ERFRTITQSY 90 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~---------~~~~~~~~~~ 90 (108)
..++|+++|.+|||||||++++.+..+.....+....+.....+.+.+ ...+.+|||+|. +.|...+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 447999999999999999999998765322222222345666777743 246889999997 2233322 24
Q ss_pred cccCcEEEEEEeccccC
Q psy5771 91 YRSANGVIIGEILCFYG 107 (108)
Q Consensus 91 ~~~~~~~i~v~dit~~~ 107 (108)
++++|++++|+|+++..
T Consensus 266 ~~~ADlil~VvD~s~~~ 282 (351)
T TIGR03156 266 VREADLLLHVVDASDPD 282 (351)
T ss_pred HHhCCEEEEEEECCCCc
Confidence 78999999999998754
No 158
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.58 E-value=3.6e-14 Score=86.59 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc--------hHhhcc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQSYYR 92 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~~ 92 (108)
++|+++|++|+|||||++++.+..... ...+....++....+..++ ..+.+||++|...+... ...+++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876421 1223333344444555544 46889999997654322 234677
Q ss_pred cCcEEEEEEeccccC
Q psy5771 93 SANGVIIGEILCFYG 107 (108)
Q Consensus 93 ~~~~~i~v~dit~~~ 107 (108)
.+|++++|+|+++..
T Consensus 80 ~~~~~v~v~d~~~~~ 94 (157)
T cd04164 80 EADLVLFVIDASRGL 94 (157)
T ss_pred hCCEEEEEEECCCCC
Confidence 899999999999643
No 159
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.58 E-value=5.1e-14 Score=94.36 Aligned_cols=62 Identities=24% Similarity=0.534 Sum_probs=50.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcccc----------ccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
...++|+++|++|+|||||++++.+..+... ..+|.+.+.....+..++..+++.+|||+|.
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 3568999999999999999999998876443 3566666667777777888899999999993
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.58 E-value=1.2e-14 Score=91.41 Aligned_cols=81 Identities=20% Similarity=0.173 Sum_probs=61.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCc----------------eeeeeEEEEEEECCeEEEEEEeeCCChhhhccc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNT----------------IGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 86 (108)
+|+++|.+|+|||||++++.+........+. ...+.....+... ...+.+||++|+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 5899999999999999999987665433111 1112222233333 467899999999999888
Q ss_pred hHhhcccCcEEEEEEeccc
Q psy5771 87 TQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~ 105 (108)
+..+++.+|++++|+|.+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~ 97 (189)
T cd00881 79 VIRGLSVSDGAILVVDANE 97 (189)
T ss_pred HHHHHHhcCEEEEEEECCC
Confidence 8999999999999999875
No 161
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=1.9e-14 Score=101.50 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh--------hccchHhhcc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--------FRTITQSYYR 92 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~~~~ 92 (108)
.+|+++|.+|||||||++++.+.... ....|....+.....+.+++ ..+.+|||+|.+. +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 48999999999999999999987642 11223333455556667766 5689999999876 2333455788
Q ss_pred cCcEEEEEEeccc
Q psy5771 93 SANGVIIGEILCF 105 (108)
Q Consensus 93 ~~~~~i~v~dit~ 105 (108)
.+|++++|+|.++
T Consensus 80 ~ad~il~vvd~~~ 92 (435)
T PRK00093 80 EADVILFVVDGRA 92 (435)
T ss_pred hCCEEEEEEECCC
Confidence 9999999999875
No 162
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.57 E-value=1.2e-14 Score=92.41 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC----Cccccc-----cCceeeeeEEEEEE----------ECCeEEEEEEeeCCChhh
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG----DFVEKT-----GNTIGVDFSMKTVN----------IDGKKVKLQIWDTAGQER 82 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~----~~~~~~-----~~t~~~~~~~~~~~----------~~~~~~~l~l~D~~g~~~ 82 (108)
+||+++|+.++|||||+++|... .+.... ..|.+..+....+. ..++...+.+||++|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 111111 13444333333332 123357899999999976
Q ss_pred hccchHhhcccCcEEEEEEeccc
Q psy5771 83 FRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+........+.+|++++|+|.+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~ 103 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATK 103 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCC
Confidence 54333334566899999999875
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.57 E-value=2.7e-14 Score=101.22 Aligned_cols=86 Identities=21% Similarity=0.158 Sum_probs=63.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc--------hHhh
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQSY 90 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~ 90 (108)
..+||+++|.+|||||||++++.+.+.. ....|....++....+.+++. .+.+|||+|.+.+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3479999999999999999999987641 122233334566667777664 5789999998755432 2236
Q ss_pred cccCcEEEEEEeccccC
Q psy5771 91 YRSANGVIIGEILCFYG 107 (108)
Q Consensus 91 ~~~~~~~i~v~dit~~~ 107 (108)
++.+|++++|||.++..
T Consensus 292 ~~~aD~il~VvD~s~~~ 308 (449)
T PRK05291 292 IEEADLVLLVLDASEPL 308 (449)
T ss_pred HHhCCEEEEEecCCCCC
Confidence 88999999999998753
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=2.8e-14 Score=101.71 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=63.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCCh----------hhhccch-
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRTIT- 87 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~- 87 (108)
..+||+++|.++||||||++++++.++. ....+....+.....+.+++.. +.+|||+|. +.|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999988652 2233444456666677777765 579999995 3343333
Q ss_pred HhhcccCcEEEEEEecccc
Q psy5771 88 QSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 88 ~~~~~~~~~~i~v~dit~~ 106 (108)
..+++.+|++++|||+++.
T Consensus 288 ~~~i~~ad~vilV~Da~~~ 306 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEP 306 (472)
T ss_pred HHHHhcCCEEEEEEeCCCC
Confidence 2467899999999999864
No 165
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.56 E-value=1.8e-14 Score=93.13 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=61.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccc-----------c------cCceeeeeEEEEEE--E---CCeEEEEEEeeCCCh
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEK-----------T------GNTIGVDFSMKTVN--I---DGKKVKLQIWDTAGQ 80 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~-----------~------~~t~~~~~~~~~~~--~---~~~~~~l~l~D~~g~ 80 (108)
+|+++|..++|||||+.+++....... + ....+.++....+. + +++.+.+.+||++|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986543211 0 11122222222222 1 355788999999999
Q ss_pred hhhccchHhhcccCcEEEEEEecccc
Q psy5771 81 ERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
++|......+++.+|++++|+|.+..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~ 107 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEG 107 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCC
Confidence 99988888899999999999998753
No 166
>PRK15494 era GTPase Era; Provisional
Probab=99.55 E-value=4.8e-14 Score=96.91 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=58.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccc---cccCceeeeeEEEEEEECCeEEEEEEeeCCChhh-hccchH------
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-FRTITQ------ 88 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~------ 88 (108)
...++|+++|++|||||||+++|++..+.. ....|. +.....+..++. ++.+|||+|... +..+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR--SIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc--CcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHH
Confidence 456799999999999999999999887642 222232 234445566554 579999999843 332222
Q ss_pred -hhcccCcEEEEEEeccc
Q psy5771 89 -SYYRSANGVIIGEILCF 105 (108)
Q Consensus 89 -~~~~~~~~~i~v~dit~ 105 (108)
..++++|++++|+|.+.
T Consensus 126 ~~~l~~aDvil~VvD~~~ 143 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLK 143 (339)
T ss_pred HHHhhhCCEEEEEEECCC
Confidence 24779999999999654
No 167
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.53 E-value=5.6e-14 Score=104.05 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=68.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCcee--eeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG--VDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
....+|+++|..++|||||++++....+.....+.+. ...+...+..++....+.||||||++.|..++..+++.+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4557999999999999999999998877544333222 22333334444456789999999999999999999999999
Q ss_pred EEEEEeccc
Q psy5771 97 VIIGEILCF 105 (108)
Q Consensus 97 ~i~v~dit~ 105 (108)
+|+|+|.++
T Consensus 322 aILVVDA~d 330 (742)
T CHL00189 322 AILIIAADD 330 (742)
T ss_pred EEEEEECcC
Confidence 999999875
No 168
>PRK10218 GTP-binding protein; Provisional
Probab=99.53 E-value=6.4e-14 Score=102.19 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=69.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc--CCcccc------------ccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS--GDFVEK------------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~--~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 86 (108)
..||+++|..++|||||+.+|+. +.+... ...+.+.++......+....+++++||++|+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999986 444322 1235566666666666666788999999999999999
Q ss_pred hHhhcccCcEEEEEEeccc
Q psy5771 87 TQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~ 105 (108)
+..+++.+|++++|+|.+.
T Consensus 85 v~~~l~~aDg~ILVVDa~~ 103 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFD 103 (607)
T ss_pred HHHHHHhCCEEEEEEeccc
Confidence 9999999999999999875
No 169
>KOG0072|consensus
Probab=99.53 E-value=2.6e-15 Score=90.67 Aligned_cols=84 Identities=32% Similarity=0.540 Sum_probs=74.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
+...+|+++|..|+|||++++++.-++... ..||+| +....+.+ ++.++++||..|+...+..|+.||.+.+++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceEE
Confidence 366899999999999999999999887654 669998 66667766 5688999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|.|-+|++
T Consensus 91 yVVDssd~d 99 (182)
T KOG0072|consen 91 YVVDSSDRD 99 (182)
T ss_pred EEEeccchh
Confidence 999999874
No 170
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.52 E-value=1e-13 Score=103.32 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=68.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
......|+++|..++|||||+++|....+.....+.+..+.....+.+++ ..+.||||+|++.|..++...++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 34567899999999999999999998777654444333333334455555 4588999999999999999999999999
Q ss_pred EEEEeccc
Q psy5771 98 IIGEILCF 105 (108)
Q Consensus 98 i~v~dit~ 105 (108)
|+|||.++
T Consensus 365 ILVVdAdd 372 (787)
T PRK05306 365 VLVVAADD 372 (787)
T ss_pred EEEEECCC
Confidence 99999875
No 171
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.52 E-value=1.2e-13 Score=100.53 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc---CCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS---GDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
+.|+++|..++|||||+++|.+ +.+++++.+.+..+.....+..++ ..+.+||+||+++|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999986 345555555555556555666665 67899999999999887788889999999
Q ss_pred EEEeccc
Q psy5771 99 IGEILCF 105 (108)
Q Consensus 99 ~v~dit~ 105 (108)
+|+|.++
T Consensus 79 LVVDa~~ 85 (581)
T TIGR00475 79 LVVDADE 85 (581)
T ss_pred EEEECCC
Confidence 9999975
No 172
>KOG0076|consensus
Probab=99.52 E-value=2.1e-14 Score=89.03 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=67.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC-------CccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG-------DFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
.+.++++|..++|||||+...... -.+....||+| .....+.+++ ..+.+||..||+..+.+|..||..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHHHH
Confidence 478999999999999999876532 22345668888 4445566654 458899999999999999999999
Q ss_pred CcEEEEEEecccc
Q psy5771 94 ANGVIIGEILCFY 106 (108)
Q Consensus 94 ~~~~i~v~dit~~ 106 (108)
+|++|+++|-++.
T Consensus 93 ~H~ii~viDa~~~ 105 (197)
T KOG0076|consen 93 AHGIIYVIDATDR 105 (197)
T ss_pred hceeEEeecCCCH
Confidence 9999999999884
No 173
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.51 E-value=1.2e-13 Score=84.38 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=56.4
Q ss_pred EEEcCCCCCHHHHHHHHHcCC--ccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc--------chHhhcccC
Q psy5771 25 VLIGDCGVGKTCVVHRFRSGD--FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT--------ITQSYYRSA 94 (108)
Q Consensus 25 ~lvG~~~vGKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~--------~~~~~~~~~ 94 (108)
+++|.+|||||||++++.+.. +.....++ ..+........++ ..+.+||++|...+.. ....+++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGV-TRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCc-eeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999999765 22333232 2344445555554 5688999999877543 334568899
Q ss_pred cEEEEEEecccc
Q psy5771 95 NGVIIGEILCFY 106 (108)
Q Consensus 95 ~~~i~v~dit~~ 106 (108)
|++++|+|.++.
T Consensus 78 d~ii~v~d~~~~ 89 (157)
T cd01894 78 DVILFVVDGREG 89 (157)
T ss_pred CEEEEEEecccc
Confidence 999999998753
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.50 E-value=1.5e-13 Score=96.67 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCCh--------hhhccchHhhccc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ--------ERFRTITQSYYRS 93 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~--------~~~~~~~~~~~~~ 93 (108)
+|+++|.+|||||||++++.+..... ...|....+.....+.+++. .+.+|||+|. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876321 12233333445556666664 4889999995 4455566678899
Q ss_pred CcEEEEEEeccc
Q psy5771 94 ANGVIIGEILCF 105 (108)
Q Consensus 94 ~~~~i~v~dit~ 105 (108)
+|++++|+|.+.
T Consensus 79 ad~vl~vvD~~~ 90 (429)
T TIGR03594 79 ADVILFVVDGRE 90 (429)
T ss_pred CCEEEEEEeCCC
Confidence 999999999864
No 175
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.49 E-value=1.3e-13 Score=92.08 Aligned_cols=82 Identities=13% Similarity=0.183 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccc--cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc--------cchHhhcc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVE--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--------TITQSYYR 92 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------~~~~~~~~ 92 (108)
+|+++|.+|||||||++++.+..+.. ....|.. +. ...+...+ ..++.+|||||..... .....+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~-i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NR-ISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-Cc-EEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999886532 1222322 12 22222222 2468999999975321 11245678
Q ss_pred cCcEEEEEEeccccC
Q psy5771 93 SANGVIIGEILCFYG 107 (108)
Q Consensus 93 ~~~~~i~v~dit~~~ 107 (108)
++|++++|+|.++..
T Consensus 79 ~aDvvl~VvD~~~~~ 93 (270)
T TIGR00436 79 GVDLILFVVDSDQWN 93 (270)
T ss_pred hCCEEEEEEECCCCC
Confidence 999999999998753
No 176
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.49 E-value=2.1e-13 Score=91.00 Aligned_cols=84 Identities=14% Similarity=0.165 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--ccc---------------cccC---ceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGD--FVE---------------KTGN---TIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~--~~~---------------~~~~---t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
-+|+++|..|+|||||+++++... ... ++.+ ..+.++......+..+.+++++|||+|+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 379999999999999999987421 000 0000 11222333334444556789999999999
Q ss_pred hhccchHhhcccCcEEEEEEeccc
Q psy5771 82 RFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+|......+++.+|++++|+|.++
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~ 106 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAK 106 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCC
Confidence 988777788999999999999875
No 177
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.49 E-value=3.5e-13 Score=88.37 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=57.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc-------cchHhhcccC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-------TITQSYYRSA 94 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~~~~ 94 (108)
+|+++|.+|+|||||++++.+.... ..+..+. .+.....+.+++ ..+++||++|..... .....+++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 7899999999999999999976532 2222221 234444555655 468899999975332 1223578999
Q ss_pred cEEEEEEecccc
Q psy5771 95 NGVIIGEILCFY 106 (108)
Q Consensus 95 ~~~i~v~dit~~ 106 (108)
|++++|+|.++.
T Consensus 79 d~il~V~D~t~~ 90 (233)
T cd01896 79 DLILMVLDATKP 90 (233)
T ss_pred CEEEEEecCCcc
Confidence 999999999864
No 178
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=3.3e-13 Score=83.38 Aligned_cols=84 Identities=24% Similarity=0.193 Sum_probs=56.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh----------ccc-hH
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF----------RTI-TQ 88 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~----------~~~-~~ 88 (108)
.++|+++|++|+|||||++++.+..+.. ...+....+.....+..++.. +.+||++|.... ... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999999875321 122222223334445555544 679999996433 111 12
Q ss_pred hhcccCcEEEEEEecccc
Q psy5771 89 SYYRSANGVIIGEILCFY 106 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~~ 106 (108)
..++.+|++++|+|.++.
T Consensus 80 ~~~~~~d~vi~v~d~~~~ 97 (174)
T cd01895 80 KAIERADVVLLVIDATEG 97 (174)
T ss_pred HHHhhcCeEEEEEeCCCC
Confidence 356789999999998764
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.49 E-value=2.2e-13 Score=101.18 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=61.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhh--------hccch
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--------FRTIT 87 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~ 87 (108)
.+....+|+++|.++||||||++++++..... ...|....+........++ ..+.+|||+|.+. +....
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 34455789999999999999999999875421 1224333344444444454 4578999999763 33344
Q ss_pred HhhcccCcEEEEEEeccc
Q psy5771 88 QSYYRSANGVIIGEILCF 105 (108)
Q Consensus 88 ~~~~~~~~~~i~v~dit~ 105 (108)
..+++.+|++|+|+|.++
T Consensus 349 ~~~~~~aD~iL~VvDa~~ 366 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQV 366 (712)
T ss_pred HHHHHhCCEEEEEEECCC
Confidence 557899999999999875
No 180
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.48 E-value=8.9e-14 Score=91.41 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc--------cc-----cc---cCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDF--------VE-----KT---GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~--------~~-----~~---~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 86 (108)
+|+++|..|+|||||+++++...- .. ++ ....+.........+..+..++.+||++|+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975311 00 00 012222233333333344577899999999999888
Q ss_pred hHhhcccCcEEEEEEeccc
Q psy5771 87 TQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~ 105 (108)
+..+++.+|++++|+|.+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~ 99 (237)
T cd04168 81 VERSLSVLDGAILVISAVE 99 (237)
T ss_pred HHHHHHHhCeEEEEEeCCC
Confidence 8999999999999999875
No 181
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.48 E-value=3.8e-13 Score=82.41 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=56.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc--------cchHhhcc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--------TITQSYYR 92 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------~~~~~~~~ 92 (108)
..+|+++|.+|+|||||++++.+.................. .........+.+||++|..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998765322111111111111 1222234678899999965332 23345688
Q ss_pred cCcEEEEEEecccc
Q psy5771 93 SANGVIIGEILCFY 106 (108)
Q Consensus 93 ~~~~~i~v~dit~~ 106 (108)
.+|++++|+|.++.
T Consensus 82 ~~d~i~~v~d~~~~ 95 (168)
T cd04163 82 DVDLVLFVVDASEP 95 (168)
T ss_pred hCCEEEEEEECCCc
Confidence 99999999999874
No 182
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.48 E-value=1.6e-13 Score=99.79 Aligned_cols=83 Identities=23% Similarity=0.207 Sum_probs=61.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccc----ccCceeeeeEEEEEE------------ECCeEEEEEEeeCCChhhhccc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTVN------------IDGKKVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~----~~~t~~~~~~~~~~~------------~~~~~~~l~l~D~~g~~~~~~~ 86 (108)
-|+++|+.++|||||++++.+..+... ..++++..+...... +..+...+.+|||+|++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 699999999999999999998876543 223444322211100 0001123889999999999999
Q ss_pred hHhhcccCcEEEEEEeccc
Q psy5771 87 TQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~ 105 (108)
+..+++.+|++++|||+++
T Consensus 86 ~~~~~~~aD~~IlVvD~~~ 104 (590)
T TIGR00491 86 RKRGGALADLAILIVDINE 104 (590)
T ss_pred HHHHHhhCCEEEEEEECCc
Confidence 9999999999999999986
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.47 E-value=8.7e-13 Score=92.90 Aligned_cols=86 Identities=24% Similarity=0.160 Sum_probs=60.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccch----------
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT---------- 87 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~---------- 87 (108)
...+||+++|.+++|||||++++++.+... ...+....+.....+..++. .+.+|||+|..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 456899999999999999999999875321 12222223444455556654 57899999975543221
Q ss_pred -HhhcccCcEEEEEEecccc
Q psy5771 88 -QSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 88 -~~~~~~~~~~i~v~dit~~ 106 (108)
..+++.+|++++|+|.++.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~ 267 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEG 267 (429)
T ss_pred HHHHHHhCCEEEEEEECCCC
Confidence 2368899999999999853
No 184
>PRK11058 GTPase HflX; Provisional
Probab=99.46 E-value=3.2e-13 Score=95.21 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh--ccchH------hhccc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF--RTITQ------SYYRS 93 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--~~~~~------~~~~~ 93 (108)
.+|+++|.+|||||||++++.+.++.....+....+.....+.+.+. ..+.+|||+|..+. ..++. ..++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987653322232233455556666542 24679999997331 22222 23689
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
+|++++|+|.++..
T Consensus 277 ADlIL~VvDaS~~~ 290 (426)
T PRK11058 277 ATLLLHVVDAADVR 290 (426)
T ss_pred CCEEEEEEeCCCcc
Confidence 99999999998754
No 185
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.46 E-value=2.9e-13 Score=84.22 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=52.3
Q ss_pred EEcCCCCCHHHHHHHHHcCCc-cccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh----hccch---HhhcccCcEE
Q psy5771 26 LIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----FRTIT---QSYYRSANGV 97 (108)
Q Consensus 26 lvG~~~vGKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~---~~~~~~~~~~ 97 (108)
++|++|||||||++++.+..+ ...+..+. .+.....+.+++ ...+.+||++|... .+.+. ..+++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t-~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTT-LEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCcee-ecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998864 12222221 223333444541 34578999999632 22332 2357789999
Q ss_pred EEEEecccc
Q psy5771 98 IIGEILCFY 106 (108)
Q Consensus 98 i~v~dit~~ 106 (108)
++|+|.++.
T Consensus 79 i~v~d~~~~ 87 (176)
T cd01881 79 LHVVDASED 87 (176)
T ss_pred EEEEeccCC
Confidence 999999875
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.45 E-value=4.2e-13 Score=97.99 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=64.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC--Ccc-----ccc------cCceeeeeEEEEEEE-----CCeEEEEEEeeCCChh
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG--DFV-----EKT------GNTIGVDFSMKTVNI-----DGKKVKLQIWDTAGQE 81 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~--~~~-----~~~------~~t~~~~~~~~~~~~-----~~~~~~l~l~D~~g~~ 81 (108)
..-+|+++|+.++|||||+.+++.. .+. ..+ ..+.|.++....+.+ +++.+.+++|||+|+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3458999999999999999999853 111 111 123344443333322 4567899999999999
Q ss_pred hhccchHhhcccCcEEEEEEeccc
Q psy5771 82 RFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+|...+..+++.+|++|+|+|.++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~ 109 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQ 109 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCC
Confidence 999999999999999999999986
No 187
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.44 E-value=3.2e-13 Score=83.71 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=48.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh-----hhccchHhhcccCcEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-----RFRTITQSYYRSANGV 97 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~-----~~~~~~~~~~~~~~~~ 97 (108)
||+++|.++||||||++++.+.. .. ..++.+. .+... .+||+||+. .++.+ ...++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-CccceEE-------EECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence 79999999999999999977543 21 1233332 22222 269999972 22222 2347899999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|+|.++..
T Consensus 69 l~v~d~~~~~ 78 (158)
T PRK15467 69 IYVHGANDPE 78 (158)
T ss_pred EEEEeCCCcc
Confidence 9999998754
No 188
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.44 E-value=1e-12 Score=80.70 Aligned_cols=81 Identities=19% Similarity=0.348 Sum_probs=57.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh----------hhhccchHhhcc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRTITQSYYR 92 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~~~~~ 92 (108)
+|+++|++|+|||||++.+.++.+.....++.+.+.....+..++ .+.+||++|. +.+......|++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997776666667766544444444433 6899999983 334455555655
Q ss_pred c---CcEEEEEEecccc
Q psy5771 93 S---ANGVIIGEILCFY 106 (108)
Q Consensus 93 ~---~~~~i~v~dit~~ 106 (108)
. .+++++++|.+..
T Consensus 78 ~~~~~~~~~~v~d~~~~ 94 (170)
T cd01876 78 NRENLKGVVLLIDSRHG 94 (170)
T ss_pred hChhhhEEEEEEEcCcC
Confidence 4 4678888888653
No 189
>KOG3883|consensus
Probab=99.43 E-value=5.9e-13 Score=81.31 Aligned_cols=88 Identities=25% Similarity=0.363 Sum_probs=70.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCc--cccccCceeeeeEEEEEEEC-CeEEEEEEeeCCChhhh-ccchHhhcccCc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERF-RTITQSYYRSAN 95 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~-~~~~~~~~~~~~ 95 (108)
...|++++|..+||||+++.+++-++- ..++.||++ +.+...++.+ +..-.+.++||.|...+ ..+-+.|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 457999999999999999999885543 345668886 6676666653 44567999999998777 677788999999
Q ss_pred EEEEEEeccccCC
Q psy5771 96 GVIIGEILCFYGT 108 (108)
Q Consensus 96 ~~i~v~dit~~~s 108 (108)
++++|||..++.|
T Consensus 87 afVLVYs~~d~eS 99 (198)
T KOG3883|consen 87 AFVLVYSPMDPES 99 (198)
T ss_pred eEEEEecCCCHHH
Confidence 9999999988764
No 190
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.43 E-value=1.8e-12 Score=80.22 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh------ccchHhhc--cc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF------RTITQSYY--RS 93 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~------~~~~~~~~--~~ 93 (108)
++|+++|.|+||||||++++.+....-...|-...+.....+.+++. .+.+.|+||.-.. +.+...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~--~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ--QVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE--EEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc--eEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999988754333354445666677777774 5789999994322 23334454 58
Q ss_pred CcEEEEEEecccc
Q psy5771 94 ANGVIIGEILCFY 106 (108)
Q Consensus 94 ~~~~i~v~dit~~ 106 (108)
.|+++.|.|.++.
T Consensus 79 ~D~ii~VvDa~~l 91 (156)
T PF02421_consen 79 PDLIIVVVDATNL 91 (156)
T ss_dssp SSEEEEEEEGGGH
T ss_pred CCEEEEECCCCCH
Confidence 9999999999874
No 191
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.43 E-value=8.4e-13 Score=90.02 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=58.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcc------ccccCceeeeeEEEE---------------EEECC-eEEEEEEeeCCCh-
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSGDFV------EKTGNTIGVDFSMKT---------------VNIDG-KKVKLQIWDTAGQ- 80 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~~~~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~l~l~D~~g~- 80 (108)
|.++|.++||||||++++.+.... ....|++|..+.... ...++ +.+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 233566664443211 11223 3478999999997
Q ss_pred ---hhhccchHhh---cccCcEEEEEEeccc
Q psy5771 81 ---ERFRTITQSY---YRSANGVIIGEILCF 105 (108)
Q Consensus 81 ---~~~~~~~~~~---~~~~~~~i~v~dit~ 105 (108)
+++..+...+ ++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5556565554 899999999999973
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.42 E-value=1.3e-12 Score=97.11 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=61.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCc--cccccCceeeeeEEEEEEECCeEEEEEEeeCCChh----------hhccch
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----------RFRTIT 87 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~ 87 (108)
..+||+++|.++||||||++++.+.+. ...+.+| ..+.....+.+++.. +.+|||+|.. .|..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt-T~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT-TRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC-CcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence 357999999999999999999998874 2333333 345655667777765 5699999953 222222
Q ss_pred -HhhcccCcEEEEEEecccc
Q psy5771 88 -QSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 88 -~~~~~~~~~~i~v~dit~~ 106 (108)
..+++.+|++++|+|.+..
T Consensus 526 ~~~~i~~advvilViDat~~ 545 (712)
T PRK09518 526 TQAAIERSELALFLFDASQP 545 (712)
T ss_pred HHHHhhcCCEEEEEEECCCC
Confidence 2347899999999999864
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.42 E-value=9e-13 Score=92.99 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=62.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHc--CCccc-----------------------------cccCceeeeeEEEEEEEC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRS--GDFVE-----------------------------KTGNTIGVDFSMKTVNID 66 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~ 66 (108)
....++|+++|..++|||||+.+++. +.... +.......+.....+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 44568999999999999999999985 22111 11122333333333333
Q ss_pred CeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 67 GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 67 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
....+.+||++|+++|.......++.+|++++|+|.++.
T Consensus 83 -~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~ 121 (426)
T TIGR00483 83 -DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDG 121 (426)
T ss_pred -CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence 456789999999998876666677899999999999875
No 194
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.42 E-value=6.8e-13 Score=86.80 Aligned_cols=80 Identities=24% Similarity=0.253 Sum_probs=54.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccccc---CceeeeeEEEEEEECCeEEEEEEeeCCChhhhc-----cchHhhcccC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTG---NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-----TITQSYYRSA 94 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-----~~~~~~~~~~ 94 (108)
||+++|.+++||||+.+.+.++-.+.+.. +|...+ ...+... ..+.+++||+||+..+. ......++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve--~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE--KSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE--EEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce--EEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 79999999999999999988775544332 444422 2233323 34679999999997553 3467789999
Q ss_pred cEEEEEEeccc
Q psy5771 95 NGVIIGEILCF 105 (108)
Q Consensus 95 ~~~i~v~dit~ 105 (108)
.++|+|+|+..
T Consensus 78 ~~LIyV~D~qs 88 (232)
T PF04670_consen 78 GVLIYVFDAQS 88 (232)
T ss_dssp SEEEEEEETT-
T ss_pred CEEEEEEEccc
Confidence 99999999974
No 195
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.42 E-value=3.1e-12 Score=75.28 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=52.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc--cccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh----------hccchHhh
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----------FRTITQSY 90 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~~~ 90 (108)
+|+++|.+|+|||||++.+.+... .....++. .......+.+++.. +.++|+||... +..... .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T-~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~-~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTT-RDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLE-Q 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSS-SSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHH-H
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccce-eeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHH-H
Confidence 689999999999999999997532 11122222 12333455666655 46999999532 112323 3
Q ss_pred cccCcEEEEEEeccc
Q psy5771 91 YRSANGVIIGEILCF 105 (108)
Q Consensus 91 ~~~~~~~i~v~dit~ 105 (108)
+..+|++++|+|.+.
T Consensus 77 ~~~~d~ii~vv~~~~ 91 (116)
T PF01926_consen 77 ISKSDLIIYVVDASN 91 (116)
T ss_dssp HCTESEEEEEEETTS
T ss_pred HHHCCEEEEEEECCC
Confidence 488999999999654
No 196
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.41 E-value=1.9e-12 Score=94.35 Aligned_cols=84 Identities=25% Similarity=0.234 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccc----cCceeeeeEEEEEE--ECCeEE----------EEEEeeCCChhhhcc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKT----GNTIGVDFSMKTVN--IDGKKV----------KLQIWDTAGQERFRT 85 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~----~~t~~~~~~~~~~~--~~~~~~----------~l~l~D~~g~~~~~~ 85 (108)
..|+++|..++|||||++++.+....... .+++|..+...... ..+..+ .+.+|||||++.|..
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 86 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN 86 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence 47999999999999999999866543222 22444322211110 001111 168999999999999
Q ss_pred chHhhcccCcEEEEEEeccc
Q psy5771 86 ITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 86 ~~~~~~~~~~~~i~v~dit~ 105 (108)
++...++.+|++++|+|.++
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~ 106 (586)
T PRK04004 87 LRKRGGALADIAILVVDINE 106 (586)
T ss_pred HHHHhHhhCCEEEEEEECCC
Confidence 98888999999999999985
No 197
>PRK00089 era GTPase Era; Reviewed
Probab=99.40 E-value=2.5e-12 Score=86.62 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCcccc--ccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc--------cchHhh
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEK--TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--------TITQSY 90 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------~~~~~~ 90 (108)
.-.|+++|.+|||||||++++++...... ...|.. .. ...+... ...++.+|||||..... ......
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~-i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HR-IRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-cc-EEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 34699999999999999999998765321 111221 11 1112222 23678999999964322 223346
Q ss_pred cccCcEEEEEEeccc
Q psy5771 91 YRSANGVIIGEILCF 105 (108)
Q Consensus 91 ~~~~~~~i~v~dit~ 105 (108)
+.++|++++|+|.++
T Consensus 82 ~~~~D~il~vvd~~~ 96 (292)
T PRK00089 82 LKDVDLVLFVVDADE 96 (292)
T ss_pred HhcCCEEEEEEeCCC
Confidence 789999999999986
No 198
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.40 E-value=1.1e-12 Score=85.44 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=58.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc--cccc------------cCceeeeeE--EEEEEEC--------CeEEEEEEeeCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDF--VEKT------------GNTIGVDFS--MKTVNID--------GKKVKLQIWDTA 78 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~--~~~~------------~~t~~~~~~--~~~~~~~--------~~~~~l~l~D~~ 78 (108)
+|+++|..++|||||+.+++...- .... +...|.... ...+.+. ++.+.+++||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999874321 1000 000111111 1122222 447889999999
Q ss_pred ChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 79 GQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
|+++|......+++.+|++++|+|++.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~ 108 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVE 108 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCC
Confidence 999999999999999999999999875
No 199
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.40 E-value=1.9e-12 Score=83.50 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=55.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc--cc-----------------------------cccCceeeeeEEEEEEECCeEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDF--VE-----------------------------KTGNTIGVDFSMKTVNIDGKKVK 71 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 71 (108)
||+++|.+++|||||+++++...- .. +.......+.....+..+ ..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 689999999999999999874321 10 000111112222233333 346
Q ss_pred EEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 72 LQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 72 l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+.+|||+|+++|.......++.+|++++|+|.+.
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~ 112 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARK 112 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC
Confidence 7899999999887666677899999999999875
No 200
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.39 E-value=1.2e-12 Score=87.28 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccc-------------c-----CceeeeeEEEEEEECCeEEEEEEeeCCChhhhc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKT-------------G-----NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~-------------~-----~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 84 (108)
+|+++|.+|+|||||+++++........ . ...........+.++ ...+.+||++|...|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 5899999999999999998743211000 0 011111222333443 4568899999999888
Q ss_pred cchHhhcccCcEEEEEEeccc
Q psy5771 85 TITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 85 ~~~~~~~~~~~~~i~v~dit~ 105 (108)
..+..+++.+|++++|+|.+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~ 99 (268)
T cd04170 79 GETRAALRAADAALVVVSAQS 99 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCC
Confidence 888889999999999999875
No 201
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.39 E-value=1.5e-12 Score=95.08 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc--CCccccc------------cCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS--GDFVEKT------------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQ 88 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~ 88 (108)
+|+++|..++|||||+.+++. +.+.... ....|+++......+..+..++++|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999985 3332211 12234444444444444567899999999999998889
Q ss_pred hhcccCcEEEEEEeccc
Q psy5771 89 SYYRSANGVIIGEILCF 105 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~ 105 (108)
.+++.+|++++|+|.+.
T Consensus 83 ~~l~~aD~alLVVDa~~ 99 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASE 99 (594)
T ss_pred HHHHhCCEEEEEEeCCC
Confidence 99999999999999874
No 202
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=7.8e-12 Score=88.29 Aligned_cols=86 Identities=22% Similarity=0.182 Sum_probs=58.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCc-cccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh----------ccch
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF----------RTIT 87 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~----------~~~~ 87 (108)
...++|+++|.+++|||||++++++.+. .....+....+.....+..++. .+.+|||+|..+. ....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3469999999999999999999997652 2222233333344444555554 4679999995322 2111
Q ss_pred -HhhcccCcEEEEEEecccc
Q psy5771 88 -QSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 88 -~~~~~~~~~~i~v~dit~~ 106 (108)
..+++.+|++|+|+|.+..
T Consensus 249 ~~~~~~~ad~~ilViD~~~~ 268 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEG 268 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCC
Confidence 2367899999999999863
No 203
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.37 E-value=5.8e-12 Score=86.51 Aligned_cols=84 Identities=13% Similarity=0.032 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh----hccchHh---hccc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----FRTITQS---YYRS 93 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~---~~~~ 93 (108)
-.|.|+|.++||||||++++...... ..|.-| ........+.+.+ ...+.+||+||.-+ ...+... +++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfT-T~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT-TLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCc-eeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 35889999999999999999975422 122212 1223334445522 23578999999632 2234344 3457
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
++++++|+|+++.+
T Consensus 237 a~vlI~ViD~s~~~ 250 (335)
T PRK12299 237 TRLLLHLVDIEAVD 250 (335)
T ss_pred cCEEEEEEcCCCCC
Confidence 99999999999754
No 204
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.37 E-value=4.1e-12 Score=76.96 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=54.9
Q ss_pred EEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc-------chHhhcccCcEE
Q psy5771 26 LIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT-------ITQSYYRSANGV 97 (108)
Q Consensus 26 lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------~~~~~~~~~~~~ 97 (108)
++|..|+|||||++++.+.... ....+............... ...+.+||++|...+.. ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999977554 22222222223333333321 45689999999876543 334478999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|+|.+...
T Consensus 80 l~v~~~~~~~ 89 (163)
T cd00880 80 LFVVDADLRA 89 (163)
T ss_pred EEEEeCCCCC
Confidence 9999998754
No 205
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.36 E-value=3.4e-12 Score=90.04 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=58.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCC--cccc---------------------------ccCceeeeeEEEEEEECCeE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD--FVEK---------------------------TGNTIGVDFSMKTVNIDGKK 69 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~~ 69 (108)
...++|+++|..++|||||+++++... .... .+...|.+.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 345899999999999999999998321 1000 00012222222222333345
Q ss_pred EEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 70 ~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
..+.+||++|+++|.......++.+|++++|+|.++
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 678999999998886655555789999999999975
No 206
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.36 E-value=6e-12 Score=94.09 Aligned_cols=84 Identities=21% Similarity=0.221 Sum_probs=59.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc----------hHhh
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI----------TQSY 90 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~----------~~~~ 90 (108)
.++|+++|.+|||||||++++.+.... ..+..|.+...++..+.....++++||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 468999999999999999999876542 2233444444444444444567899999998766432 2234
Q ss_pred c--ccCcEEEEEEecccc
Q psy5771 91 Y--RSANGVIIGEILCFY 106 (108)
Q Consensus 91 ~--~~~~~~i~v~dit~~ 106 (108)
+ ..+|++++|+|.++.
T Consensus 81 l~~~~aD~vI~VvDat~l 98 (772)
T PRK09554 81 ILSGDADLLINVVDASNL 98 (772)
T ss_pred HhccCCCEEEEEecCCcc
Confidence 3 479999999999874
No 207
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.36 E-value=5.1e-12 Score=86.61 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh----hccchHhhcc---c
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----FRTITQSYYR---S 93 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~~~~---~ 93 (108)
-.|+++|.++||||||++++...... ..|..|. .......+.+++ ...+.+||+||..+ ...+...+++ .
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT-~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTT-LVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc-cCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 46899999999999999999976531 1121111 223333445543 35688999999742 2234445544 6
Q ss_pred CcEEEEEEecccc
Q psy5771 94 ANGVIIGEILCFY 106 (108)
Q Consensus 94 ~~~~i~v~dit~~ 106 (108)
++++++|+|+++.
T Consensus 236 ad~ll~VvD~s~~ 248 (329)
T TIGR02729 236 TRVLLHLIDISPL 248 (329)
T ss_pred hCEEEEEEcCccc
Confidence 9999999999875
No 208
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.35 E-value=4.8e-12 Score=80.98 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=50.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceee-eeEEEEEEEC-CeEEEEEEeeCCChhhhccchHhh-----ccc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV-DFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSY-----YRS 93 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~-----~~~ 93 (108)
.+||+++|++|||||||++.+.+........++.+. +.......+. .....+.+||++|..........| +..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 379999999999999999999986654333333221 1111111111 112358999999975433222233 677
Q ss_pred CcEEEEEEe
Q psy5771 94 ANGVIIGEI 102 (108)
Q Consensus 94 ~~~~i~v~d 102 (108)
+|+++++.+
T Consensus 81 ~d~~l~v~~ 89 (197)
T cd04104 81 YDFFIIISS 89 (197)
T ss_pred cCEEEEEeC
Confidence 899888754
No 209
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.35 E-value=2.9e-12 Score=95.36 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=66.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcC---------------Ccccc---ccCceeeeeEEEEEEECCeEEEEEEeeCC
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSG---------------DFVEK---TGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 78 (108)
......||+++|..++|||||+.+++.. .+.+. ...|+........+..++..+.+.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 3445679999999999999999999742 22111 12244433333344456677889999999
Q ss_pred ChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 79 GQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
|+.+|.......++.+|++++|+|.+.
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~ 121 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVE 121 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCC
Confidence 999988888889999999999999864
No 210
>KOG1707|consensus
Probab=99.34 E-value=2.2e-12 Score=92.31 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=69.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|+.||||||||-.++.++|++..++... ....-..+....+...+.|++..++-+.....-++.||++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 4568999999999999999999999999887655443 22222344455677899999988777777788899999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
++|++++..
T Consensus 85 lvyavd~~~ 93 (625)
T KOG1707|consen 85 LVYAVDDES 93 (625)
T ss_pred EEEecCChH
Confidence 999998853
No 211
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.34 E-value=1e-11 Score=90.76 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=59.2
Q ss_pred cCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc------hHhhc--ccCcEEEE
Q psy5771 28 GDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI------TQSYY--RSANGVII 99 (108)
Q Consensus 28 G~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~--~~~~~~i~ 99 (108)
|++|||||||++++.+..+.....|....+.....+++++. ++++||++|++++... .+.++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988764445566666666667777664 4789999999877543 34444 37899999
Q ss_pred EEecccc
Q psy5771 100 GEILCFY 106 (108)
Q Consensus 100 v~dit~~ 106 (108)
|+|.++.
T Consensus 79 VvDat~l 85 (591)
T TIGR00437 79 VVDASNL 85 (591)
T ss_pred EecCCcc
Confidence 9999874
No 212
>KOG0077|consensus
Probab=99.33 E-value=2e-12 Score=79.84 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=69.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
+.=|++++|..++|||||++.+..+... .+.||.. ..++++.+.+ ++++.+|.+|+..-+..|+.|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 3459999999999999999999987754 4668876 4456677765 668899999999999999999999999999
Q ss_pred EEecccc
Q psy5771 100 GEILCFY 106 (108)
Q Consensus 100 v~dit~~ 106 (108)
.+|..+.
T Consensus 94 lvda~d~ 100 (193)
T KOG0077|consen 94 LVDAYDQ 100 (193)
T ss_pred eeehhhH
Confidence 9998765
No 213
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.33 E-value=8.3e-12 Score=80.24 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCc---cccc--cCceeeeeEEEEEE-----------------------EC--C----
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDF---VEKT--GNTIGVDFSMKTVN-----------------------ID--G---- 67 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~---~~~~--~~t~~~~~~~~~~~-----------------------~~--~---- 67 (108)
++|.++|..|+|||||+..+..-.. ..+. ..++...+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999864311 1111 11111111111100 00 1
Q ss_pred eEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 68 ~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
....+.|||++|++.|.......+..+|++++|+|.+.
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~ 118 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE 118 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC
Confidence 11568999999999987777777888999999999986
No 214
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.32 E-value=4.8e-12 Score=91.29 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=61.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc--CCcc---------------cc---ccCceeeeeEEEEEEECCeEEEEEEeeCC
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRS--GDFV---------------EK---TGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~--~~~~---------------~~---~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 78 (108)
....+|+++|..++|||||+.+++. +... .+ .....+..+......+..+.+.+++|||+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3456999999999999999999963 1100 00 00112223333333344445778999999
Q ss_pred ChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 79 GQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
|+++|......+++.+|++|+|+|.++
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~ 114 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAK 114 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCC
Confidence 999998877888999999999999875
No 215
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.32 E-value=1.1e-11 Score=89.55 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=63.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc--CCccc------------------cccCceeeeeEEEEEEECCeEEEEEEeeCC
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRS--GDFVE------------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 78 (108)
....+|+++|..++|||||+.+++. +.... ......+.++......++.+.+++++|||+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4557999999999999999999852 11100 011122333444444555556789999999
Q ss_pred ChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 79 GQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
|+..|......+++.+|++|+|+|.+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~ 115 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAK 115 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCC
Confidence 999888777778999999999999875
No 216
>PRK13351 elongation factor G; Reviewed
Probab=99.31 E-value=4.8e-12 Score=93.83 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=60.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCc-------------cc-------cccCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF-------------VE-------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~-------------~~-------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
...+|+++|..++|||||+++++...- .. +...|+. .....+.. ....+++||++|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~--~~~~i~liDtPG 82 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDW--DNHRINLIDTPG 82 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEE--CCEEEEEEECCC
Confidence 457999999999999999999974210 00 1122332 12223333 356789999999
Q ss_pred hhhhccchHhhcccCcEEEEEEeccc
Q psy5771 80 QERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+.+|...+..+++.+|++++|+|.+.
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~ 108 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVT 108 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 99998888999999999999999875
No 217
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.31 E-value=1.9e-11 Score=85.62 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc-cc-----cCceeeeeEEEEE---------------EEC-CeEEEEEEeeCCC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KT-----GNTIGVDFSMKTV---------------NID-GKKVKLQIWDTAG 79 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~-~~-----~~t~~~~~~~~~~---------------~~~-~~~~~l~l~D~~g 79 (108)
+||.++|.++||||||++++.+..+.. .| .|+.|..+....+ ..+ ...+.+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876542 22 3444432211100 011 1347799999999
Q ss_pred h----hhhccchHhh---cccCcEEEEEEecc
Q psy5771 80 Q----ERFRTITQSY---YRSANGVIIGEILC 104 (108)
Q Consensus 80 ~----~~~~~~~~~~---~~~~~~~i~v~dit 104 (108)
. .+...+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3444555566 88999999999997
No 218
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.30 E-value=4.6e-11 Score=84.21 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=53.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChh----hhccchHhhcc---cC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSYYR---SA 94 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----~~~~~~~~~~~---~~ 94 (108)
.|.|+|.++||||||++++.+.... ..+.-| ......-.+.+++ ...+.+||+||.. ....+...|++ .+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT-Tl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT-TLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcc-eeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 7999999999999999999976532 112111 1222233344431 2458899999963 22334455544 58
Q ss_pred cEEEEEEecccc
Q psy5771 95 NGVIIGEILCFY 106 (108)
Q Consensus 95 ~~~i~v~dit~~ 106 (108)
+++++|+|+++.
T Consensus 238 ~llI~VID~s~~ 249 (424)
T PRK12297 238 RVIVHVIDMSGS 249 (424)
T ss_pred CEEEEEEeCCcc
Confidence 999999999864
No 219
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.28 E-value=1.5e-11 Score=82.35 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--cc----------------ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD--FV----------------EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~--~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 84 (108)
+|+++|.+++|||||+++++... .. .+....+..+.....+.++ ..++.+|||||..+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 58999999999999999997321 10 0011111112222333343 4678899999999888
Q ss_pred cchHhhcccCcEEEEEEeccc
Q psy5771 85 TITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 85 ~~~~~~~~~~~~~i~v~dit~ 105 (108)
..+..+++.+|++++|.|.+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~ 99 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVA 99 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCC
Confidence 888899999999999999764
No 220
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.25 E-value=4.9e-11 Score=85.37 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=54.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChh----hhccchH---hhcc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQ---SYYR 92 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----~~~~~~~---~~~~ 92 (108)
..+|+|||.++||||||++++......- .| |-.........+.+++ ..+.+||+||.- ....+.. ..+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIady-pfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADY-PFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcccccc-CcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 3578999999999999999999764321 22 2111234444555555 468999999952 1112222 2356
Q ss_pred cCcEEEEEEeccc
Q psy5771 93 SANGVIIGEILCF 105 (108)
Q Consensus 93 ~~~~~i~v~dit~ 105 (108)
.++++|+|+|+++
T Consensus 236 radvLv~VVD~s~ 248 (500)
T PRK12296 236 RCAVLVHVVDCAT 248 (500)
T ss_pred hcCEEEEEECCcc
Confidence 7999999999985
No 221
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.24 E-value=6.5e-11 Score=80.21 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=52.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCcc--ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc-------chH
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV--EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT-------ITQ 88 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------~~~ 88 (108)
....++|+++|.+||||||++|++++.... .... ..+..........++ .++.++||||...... ...
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 456789999999999999999999977532 1111 111111112223344 5689999999654321 122
Q ss_pred hhc--ccCcEEEEEEecc
Q psy5771 89 SYY--RSANGVIIGEILC 104 (108)
Q Consensus 89 ~~~--~~~~~~i~v~dit 104 (108)
.++ ...|++++|..+.
T Consensus 112 ~~l~~~g~DvVLyV~rLD 129 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLD 129 (313)
T ss_pred HHhhcCCCCEEEEEeccC
Confidence 222 2589999996654
No 222
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.24 E-value=9e-11 Score=82.47 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=63.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccch--------Hh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT--------QS 89 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~ 89 (108)
+.-+|++++|.|+||||||+|.+++.+-.- ...|-...|.....+.++| +.+.+.||+|..+..... ..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 345899999999999999999999875421 1223333567777888887 557899999976543332 23
Q ss_pred hcccCcEEEEEEeccc
Q psy5771 90 YYRSANGVIIGEILCF 105 (108)
Q Consensus 90 ~~~~~~~~i~v~dit~ 105 (108)
.++.||.+++|+|.+.
T Consensus 293 ~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 293 AIEEADLVLFVLDASQ 308 (454)
T ss_pred HHHhCCEEEEEEeCCC
Confidence 5889999999999886
No 223
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.23 E-value=4.5e-11 Score=76.35 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=52.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcccccc--CceeeeeEEEEEEECCeEEEEEEeeCCChhhhc--------cc---hH
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTG--NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--------TI---TQ 88 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------~~---~~ 88 (108)
++|+++|.+|||||||++.+++.+...... +....+.......+++. ++.++||||..... .+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999875432111 11111233334445554 57899999954331 11 11
Q ss_pred hhcccCcEEEEEEeccc
Q psy5771 89 SYYRSANGVIIGEILCF 105 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~ 105 (108)
....+.|++++|.++..
T Consensus 79 ~~~~g~~~illVi~~~~ 95 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR 95 (196)
T ss_pred hcCCCCEEEEEEEECCC
Confidence 22467899999998764
No 224
>KOG1423|consensus
Probab=99.23 E-value=1.3e-10 Score=78.26 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh------hhc----
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE------RFR---- 84 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~------~~~---- 84 (108)
.....+...|+++|.|+||||||.|.+++......... ...+.....--+.....++.|+||||-- ++.
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K-~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRK-VHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCcccccccc-ccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence 34456889999999999999999999998876442211 1111111111223345679999999932 111
Q ss_pred --cchHhhcccCcEEEEEEeccc
Q psy5771 85 --TITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 85 --~~~~~~~~~~~~~i~v~dit~ 105 (108)
.-.......||++++++|.++
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASA 167 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccC
Confidence 111234678999999999986
No 225
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.23 E-value=7.8e-11 Score=75.45 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=59.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCc-------c----c---cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDF-------V----E---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~-------~----~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 86 (108)
.++|.++|..++|||||+.+++.... . - ..+...|.........+.....++.+.|+||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47999999999999999999975310 0 0 00012222333333344444556889999999988777
Q ss_pred hHhhcccCcEEEEEEeccc
Q psy5771 87 TQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~ 105 (108)
....+..+|++++|.|.+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~ 100 (195)
T cd01884 82 MITGAAQMDGAILVVSATD 100 (195)
T ss_pred HHHHhhhCCEEEEEEECCC
Confidence 7777889999999999763
No 226
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.22 E-value=8.9e-11 Score=73.56 Aligned_cols=85 Identities=28% Similarity=0.405 Sum_probs=64.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCcc--------ccc----cCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV--------EKT----GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT 85 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~--------~~~----~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~ 85 (108)
.-...||++.|+-++||||+++.+...... ..+ ..|+..++-. +.+++ ...+.++++|||++|+.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEEcC-cceEEEecCCCcHHHHH
Confidence 345679999999999999999999876531 111 1244444433 33333 24589999999999999
Q ss_pred chHhhcccCcEEEEEEeccc
Q psy5771 86 ITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 86 ~~~~~~~~~~~~i~v~dit~ 105 (108)
+|..+.+++.+.|++.|-+.
T Consensus 84 m~~~l~~ga~gaivlVDss~ 103 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSR 103 (187)
T ss_pred HHHHHhCCcceEEEEEecCC
Confidence 99999999999999999764
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.22 E-value=8.7e-11 Score=76.32 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC--cc-----------------------------ccccCceeeeeEEEEEEECCeEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD--FV-----------------------------EKTGNTIGVDFSMKTVNIDGKKVK 71 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 71 (108)
+|+++|..++|||||+.+++... .. .+.......+.....+.. ....
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~--~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET--EKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee--CCeE
Confidence 58999999999999999986320 00 000011111222233333 3467
Q ss_pred EEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 72 LQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 72 l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+.+||++|+..|.......++.+|++++|+|.+.
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~ 112 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARK 112 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCC
Confidence 8999999998887666667788999999999986
No 228
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.21 E-value=2.3e-11 Score=71.72 Aligned_cols=34 Identities=50% Similarity=0.540 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcccccc-Ccee
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTG-NTIG 55 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~-~t~~ 55 (108)
+||+++|+.|||||+|+.+|....+...+. ++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence 589999999999999999999888876555 5555
No 229
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.20 E-value=5.5e-11 Score=75.47 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=59.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCcc--c----------------cccCceeeeeEEEEEEECCeEEEEEEeeCCChhh
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFV--E----------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 82 (108)
..+|+++|..++|||||+.++....-. . +.......+.....+........+.++|+||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 478999999999999999999843211 0 0001111112223333113445689999999999
Q ss_pred hccchHhhcccCcEEEEEEeccc
Q psy5771 83 FRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
|.......++.+|++|+|.|...
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~ 105 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDAND 105 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTT
T ss_pred eeecccceecccccceeeeeccc
Confidence 98888888999999999999863
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.20 E-value=1.1e-10 Score=81.85 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=59.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC-----C--cc-----c--cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG-----D--FV-----E--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~-----~--~~-----~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 83 (108)
....++|+++|..++|||||+.++... + +. . ..+...|.+.....+.+.....++.+||+||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 345689999999999999999999732 0 00 0 00011222233334444444567889999999988
Q ss_pred ccchHhhcccCcEEEEEEeccc
Q psy5771 84 RTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~dit~ 105 (108)
..........+|++++|+|.+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATD 110 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCC
Confidence 6544455667899999999864
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=99.19 E-value=1.6e-10 Score=81.05 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=59.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC-------Ccc-----c--cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG-------DFV-----E--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~-------~~~-----~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 83 (108)
....++|+++|..++|||||+++++.. .+. . ......|.+.......+.....++.++|+||+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 345689999999999999999999852 100 0 00012222232333334334456789999999988
Q ss_pred ccchHhhcccCcEEEEEEeccc
Q psy5771 84 RTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~dit~ 105 (108)
.......+..+|++++|+|.+.
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~ 110 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCC
Confidence 6555566778999999999864
No 232
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.18 E-value=2.4e-10 Score=83.90 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc---CCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS---GDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
-|.++|..++|||||++++.+ +.+.++....+.++.....+...+ ...+.+||+||+++|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 478999999999999999985 333333322222223222333322 1247899999999997666677889999999
Q ss_pred EEeccc
Q psy5771 100 GEILCF 105 (108)
Q Consensus 100 v~dit~ 105 (108)
|+|.+.
T Consensus 81 VVda~e 86 (614)
T PRK10512 81 VVACDD 86 (614)
T ss_pred EEECCC
Confidence 999864
No 233
>COG1159 Era GTPase [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=78.00 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCcee--eeeEEEEEEECCeEEEEEEeeCCChhhh--------ccchHhh
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG--VDFSMKTVNIDGKKVKLQIWDTAGQERF--------RTITQSY 90 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~g~~~~--------~~~~~~~ 90 (108)
.--++++|.|+||||||+|++++.+..- .++... .....-.+..+ ..++.+.||||-.+- .......
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisI-vS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEe-ecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3468999999999999999999886532 111111 11112222222 567899999995432 2233445
Q ss_pred cccCcEEEEEEeccc
Q psy5771 91 YRSANGVIIGEILCF 105 (108)
Q Consensus 91 ~~~~~~~i~v~dit~ 105 (108)
+.++|+++||.|.+.
T Consensus 83 l~dvDlilfvvd~~~ 97 (298)
T COG1159 83 LKDVDLILFVVDADE 97 (298)
T ss_pred hccCcEEEEEEeccc
Confidence 889999999999764
No 234
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.16 E-value=3.1e-10 Score=75.19 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=53.9
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCcccc--ccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc--c------
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK--TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--T------ 85 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--~------ 85 (108)
+.....++|+|+|.+|||||||++.+.+...... ..++. ..........++ ..+.+|||||..... .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T-~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSET-LRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCce-EEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHH
Confidence 3456678999999999999999999998754221 21211 122222333444 458999999965431 0
Q ss_pred --chHhhcc--cCcEEEEEEecc
Q psy5771 86 --ITQSYYR--SANGVIIGEILC 104 (108)
Q Consensus 86 --~~~~~~~--~~~~~i~v~dit 104 (108)
....++. ..+++++|..+.
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD 125 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLD 125 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCC
Confidence 1122333 578888886554
No 235
>PLN03126 Elongation factor Tu; Provisional
Probab=99.16 E-value=2.4e-10 Score=81.76 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=59.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC------Ccccc--------ccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG------DFVEK--------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~------~~~~~--------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 83 (108)
....++|+++|..++|||||+.+++.. ...+. .....|.........+......+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 456789999999999999999999851 11110 0112222222222223223446789999999998
Q ss_pred ccchHhhcccCcEEEEEEecc
Q psy5771 84 RTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~dit 104 (108)
.......+..+|++++|+|.+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~ 178 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGA 178 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECC
Confidence 766666678899999999976
No 236
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.16 E-value=1.3e-10 Score=86.35 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=60.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCC--cc--ccc--------------cCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD--FV--EKT--------------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~--~~--~~~--------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
+...+|+++|..++|||||+++++... .. ... ...+..+.....+.++ ..++.+|||+|+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCC
Confidence 345699999999999999999997321 10 000 1111222333344444 467899999999
Q ss_pred hhhccchHhhcccCcEEEEEEeccc
Q psy5771 81 ERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
.++...+...++.+|++++|+|.+.
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~ 110 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVG 110 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCC
Confidence 9888888889999999999999875
No 237
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.14 E-value=3e-11 Score=76.31 Aligned_cols=78 Identities=27% Similarity=0.437 Sum_probs=51.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEE-CCeEEEEEEeeCCChhhhccchHh---hcccCcEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERFRTITQS---YYRSANGVI 98 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~---~~~~~~~~i 98 (108)
.|+++|++|+|||+|..++..+...+.+... .... ...+ ....-.+.+.|+||+++.+..... +...+.++|
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 6999999999999999999999765533322 2111 1112 122335789999999988753333 588899999
Q ss_pred EEEecc
Q psy5771 99 IGEILC 104 (108)
Q Consensus 99 ~v~dit 104 (108)
||.|-+
T Consensus 81 fvvDSs 86 (181)
T PF09439_consen 81 FVVDSS 86 (181)
T ss_dssp EEEETT
T ss_pred EEEeCc
Confidence 999976
No 238
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.14 E-value=2e-10 Score=80.56 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc---------cchHhhc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR---------TITQSYY 91 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~---------~~~~~~~ 91 (108)
..|+++|.|+||||||.||+++....- +..|-+..|......++.+.. +.+.||+|-+.-. ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 479999999999999999999875421 122433345555666776655 7899999965322 2223357
Q ss_pred ccCcEEEEEEecc
Q psy5771 92 RSANGVIIGEILC 104 (108)
Q Consensus 92 ~~~~~~i~v~dit 104 (108)
..||++|||+|..
T Consensus 82 ~eADvilfvVD~~ 94 (444)
T COG1160 82 EEADVILFVVDGR 94 (444)
T ss_pred HhCCEEEEEEeCC
Confidence 8999999999964
No 239
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.14 E-value=1.7e-10 Score=74.66 Aligned_cols=81 Identities=16% Similarity=0.305 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcccccc--CceeeeeEEEEEEECCeEEEEEEeeCCChhhh--------ccch---H
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTG--NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF--------RTIT---Q 88 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--------~~~~---~ 88 (108)
++|+|+|.+|+||||++|.+++....+... .............+++.. +.++||||-... ..+. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999876533221 111122334444677755 679999994221 1111 1
Q ss_pred hhcccCcEEEEEEecc
Q psy5771 89 SYYRSANGVIIGEILC 104 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit 104 (108)
....+.|++++|..+.
T Consensus 79 ~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG 94 (212)
T ss_dssp HTTT-ESEEEEEEETT
T ss_pred hccCCCeEEEEEEecC
Confidence 2345789999999876
No 240
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=6.4e-11 Score=78.58 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=56.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEE-EEEEECCeEEEEEEeeCCChhh-------hccchHhh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSM-KTVNIDGKKVKLQIWDTAGQER-------FRTITQSY 90 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~ 90 (108)
..+++|+++|..|+|||||+|.+.+++..+...-..+.+... ....+++ -.+.+||+||-++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 456899999999999999999999765543221111111111 1223333 3488999999654 66677788
Q ss_pred cccCcEEEEEEeccc
Q psy5771 91 YRSANGVIIGEILCF 105 (108)
Q Consensus 91 ~~~~~~~i~v~dit~ 105 (108)
+...|.++++-+.-+
T Consensus 115 l~~~DLvL~l~~~~d 129 (296)
T COG3596 115 LPKLDLVLWLIKADD 129 (296)
T ss_pred hhhccEEEEeccCCC
Confidence 888997777766544
No 241
>PRK12736 elongation factor Tu; Reviewed
Probab=99.12 E-value=4.2e-10 Score=78.91 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccc--------------cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE--------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 83 (108)
....++|+++|..++|||||+.++++..... ..+...|.+.......+......+.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4456899999999999999999997521000 00012222233333444334456789999999988
Q ss_pred ccchHhhcccCcEEEEEEeccc
Q psy5771 84 RTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~dit~ 105 (108)
......-...+|++++|+|.+.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCC
Confidence 6555555678899999999764
No 242
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.12 E-value=2.9e-10 Score=80.01 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=57.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCcc---cccc--CceeeeeEE----------------EEEEECC------eEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV---EKTG--NTIGVDFSM----------------KTVNIDG------KKVKL 72 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~---~~~~--~t~~~~~~~----------------~~~~~~~------~~~~l 72 (108)
..++|+++|..++|||||+.++.+.... ++.. -|+...+.. .....++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999999643211 1100 111111110 0000011 13568
Q ss_pred EEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 73 QIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 73 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
.+||+||+++|...+......+|++++|+|.+.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~ 115 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANE 115 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 999999999998777777888999999999874
No 243
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.12 E-value=4.8e-10 Score=76.59 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=36.1
Q ss_pred EEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 69 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
.+.+.+||++|+...+..|..++.+++++++|.|+++++
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d 198 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYD 198 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcc
Confidence 467889999999999999999999999999999999864
No 244
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.11 E-value=2.7e-10 Score=69.30 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=41.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
+++++|.+|||||||++++.+.+... .....+.+.+...+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887643 334444445555666654 4789999985
No 245
>PTZ00258 GTP-binding protein; Provisional
Probab=99.11 E-value=7.4e-10 Score=77.37 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=55.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCe---------------EEEEEEeeCCChh
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQE 81 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~ 81 (108)
.....++|.++|.|+||||||++.+.+........|-...+...-.+.+.+. ..++++.|+||-.
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 3455679999999999999999999776532221132222333334444322 2358899999953
Q ss_pred hh----ccchH---hhcccCcEEEEEEecc
Q psy5771 82 RF----RTITQ---SYYRSANGVIIGEILC 104 (108)
Q Consensus 82 ~~----~~~~~---~~~~~~~~~i~v~dit 104 (108)
.- ..+-. ..++.+|++++|.|..
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 21 11222 2367899999999974
No 246
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.10 E-value=3.5e-10 Score=79.71 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=55.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCc---ccc--ccCceeeeeEEEEE----------------EEC--C----eEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF---VEK--TGNTIGVDFSMKTV----------------NID--G----KKV 70 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~---~~~--~~~t~~~~~~~~~~----------------~~~--~----~~~ 70 (108)
....++|+++|..++|||||+.++.+... .++ ..-|+...+....+ .++ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 44568999999999999999999864211 111 11222221111000 001 0 125
Q ss_pred EEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 71 KLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 71 ~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
.+.+||+||+++|..........+|++++|+|.+.
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~ 120 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANE 120 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 78999999999886544444556799999999984
No 247
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.10 E-value=6.2e-10 Score=77.94 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=51.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc----cch---HhhcccC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR----TIT---QSYYRSA 94 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~----~~~---~~~~~~~ 94 (108)
.|.|+|.++||||||++++...+..- .+..|. .....-.+...+ ...+.++|+||..+-. .+. -..+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT-~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTT-LVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCc-cCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 68999999999999999999765321 121111 123333344432 2347899999964211 111 1347789
Q ss_pred cEEEEEEecc
Q psy5771 95 NGVIIGEILC 104 (108)
Q Consensus 95 ~~~i~v~dit 104 (108)
+++++|+|++
T Consensus 239 dvlL~VVD~s 248 (390)
T PRK12298 239 RVLLHLIDIA 248 (390)
T ss_pred CEEEEEeccC
Confidence 9999999998
No 248
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.08 E-value=8.5e-10 Score=78.98 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=57.9
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCc--ccc-----------cc--------------------CceeeeeEEEE
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDF--VEK-----------TG--------------------NTIGVDFSMKT 62 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~--~~~-----------~~--------------------~t~~~~~~~~~ 62 (108)
+.....++|+++|..++|||||+.+++...- ... .. ..+.++.....
T Consensus 22 ~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 22 QQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred ccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 3446679999999999999999999874321 100 00 00111222222
Q ss_pred EEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecc
Q psy5771 63 VNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 63 ~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
+.. ...++.++|+||+++|.......++.+|++++|+|.+
T Consensus 102 ~~~--~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~ 141 (474)
T PRK05124 102 FST--EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDAR 141 (474)
T ss_pred ecc--CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECC
Confidence 233 3456889999999988655555578999999999975
No 249
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.07 E-value=8.9e-10 Score=67.15 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=49.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh----hhhccchHhhcccCcEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----ERFRTITQSYYRSANGVI 98 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----~~~~~~~~~~~~~~~~~i 98 (108)
||+++|..|+|||||++++.+.+.. +..|..+++.. .+.|+||. ..|..-.-..-.+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 8999999999999999999987652 33343333321 24688884 223222233455899999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
++.|.++..
T Consensus 69 ll~dat~~~ 77 (143)
T PF10662_consen 69 LLQDATEPR 77 (143)
T ss_pred EEecCCCCC
Confidence 999998764
No 250
>CHL00071 tufA elongation factor Tu
Probab=99.06 E-value=1.4e-09 Score=76.56 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=59.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCc----------------cccccCceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF----------------VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
....++|+++|..++|||||+++++...- .++. ..|.........+.....++.+.|+||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~--~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEK--ARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhh--cCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 44568999999999999999999986311 0111 12222222223333334567899999998
Q ss_pred hhccchHhhcccCcEEEEEEeccc
Q psy5771 82 RFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+|.......+..+|++++|.|.+.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~ 110 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAAD 110 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCC
Confidence 887666667889999999999763
No 251
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.05 E-value=1.1e-09 Score=75.52 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=35.2
Q ss_pred EEEEEeeCCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 70 ~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
+.+.+||.+|+...+..|..|+.++++++||.|+++++
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d 221 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYD 221 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccc
Confidence 56789999999999999999999999999999999864
No 252
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.03 E-value=2.7e-09 Score=71.84 Aligned_cols=60 Identities=27% Similarity=0.574 Sum_probs=42.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccc----------cCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT----------GNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
..++|+|+|++|+|||||++.+++....... ..+..+......+.-++..+.|.++||+|
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 5789999999999999999999976543321 12333334444555577889999999998
No 253
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.02 E-value=1e-09 Score=77.19 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC--ccc-------------------------------cccCceeeeeEEEEEEECCe
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGD--FVE-------------------------------KTGNTIGVDFSMKTVNIDGK 68 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~--~~~-------------------------------~~~~t~~~~~~~~~~~~~~~ 68 (108)
+||+++|..++|||||+.+++... ... +....+..+.....++. .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence 589999999999999999986321 100 00000111222222233 3
Q ss_pred EEEEEEeeCCChhhhccchHhhcccCcEEEEEEecc
Q psy5771 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 69 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
..++.++|+||+++|.......+..+|++++|+|.+
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~ 114 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDAR 114 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 456889999999998765566788999999999975
No 254
>PRK00049 elongation factor Tu; Reviewed
Probab=99.01 E-value=3e-09 Score=74.70 Aligned_cols=87 Identities=15% Similarity=0.094 Sum_probs=59.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcc--------------ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV--------------EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 84 (108)
...++|+++|..++|||||+.+++..... .......|.+.......+.....++.+.|+||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 45689999999999999999999862100 0000122222333333443344567899999998887
Q ss_pred cchHhhcccCcEEEEEEeccc
Q psy5771 85 TITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 85 ~~~~~~~~~~~~~i~v~dit~ 105 (108)
......+..+|++++|.|.+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~ 110 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred HHHHhhhccCCEEEEEEECCC
Confidence 666667889999999999764
No 255
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.01 E-value=1.4e-09 Score=72.93 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=51.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCe---------------EEEEEEeeCCChhh----hc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQER----FR 84 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~----~~ 84 (108)
|.++|.++||||||++++.+........|....+.....+.+.+. ...+++.|++|... -.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 578999999999999999987653222232222344444444432 23589999999432 11
Q ss_pred cchHh---hcccCcEEEEEEecc
Q psy5771 85 TITQS---YYRSANGVIIGEILC 104 (108)
Q Consensus 85 ~~~~~---~~~~~~~~i~v~dit 104 (108)
.+... .++.+|+++.|.|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22222 367899999999864
No 256
>PRK12739 elongation factor G; Reviewed
Probab=99.00 E-value=1.4e-09 Score=81.04 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=60.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--Cc------c----------ccccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DF------V----------EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--~~------~----------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
+...+|+++|..++|||||+++++.. .. . .+....+..+.....+.+++ .++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 34678999999999999999999742 10 0 00111222223333444444 56889999999
Q ss_pred hhhccchHhhcccCcEEEEEEeccc
Q psy5771 81 ERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
.+|...+...++.+|++++|.|.+.
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~ 108 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVS 108 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCC
Confidence 9888888889999999999999764
No 257
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.00 E-value=4.4e-09 Score=72.87 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=52.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeE---------------EEEEEeeCCChhhh---
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKK---------------VKLQIWDTAGQERF--- 83 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~D~~g~~~~--- 83 (108)
++|.++|.|+||||||++++.+........|....+.....+.+.+.. .++++.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999866322111211122333333433321 35889999995321
Q ss_pred -ccchHh---hcccCcEEEEEEecc
Q psy5771 84 -RTITQS---YYRSANGVIIGEILC 104 (108)
Q Consensus 84 -~~~~~~---~~~~~~~~i~v~dit 104 (108)
..+... .++.+|++++|.|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112222 367899999999985
No 258
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.98 E-value=5.2e-09 Score=74.53 Aligned_cols=87 Identities=13% Similarity=0.128 Sum_probs=60.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCC--ccc------------------------c---ccCceeeeeEEEEEEECCeE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD--FVE------------------------K---TGNTIGVDFSMKTVNIDGKK 69 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~--~~~------------------------~---~~~t~~~~~~~~~~~~~~~~ 69 (108)
...++|+++|..++|||||+.+++... ... + .+...|.........+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 345899999999999999999886311 000 0 00111222222223334445
Q ss_pred EEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 70 ~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
..+.+.|+||+++|.......+..+|++|+|+|.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence 678999999999998888888999999999999875
No 259
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.98 E-value=2.9e-09 Score=65.61 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=40.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
...+++++|.+++|||||++++.+... ..+.++.+.+.....+..++ .+.+|||+|
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 356899999999999999999996553 34556766544333333332 588999998
No 260
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.97 E-value=3.2e-09 Score=72.07 Aligned_cols=85 Identities=19% Similarity=0.090 Sum_probs=59.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh-------ccchHhh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF-------RTITQSY 90 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~~~~ 90 (108)
.-.-+++++|.|+||||||++.+.+.+... .|.-|. .+...-.+++++ .++++.|+||.-.= ....-..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTT-l~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTT-LEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCcee-cccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeee
Confidence 344689999999999999999999865432 233222 334445566655 56889999973211 1223346
Q ss_pred cccCcEEEEEEecccc
Q psy5771 91 YRSANGVIIGEILCFY 106 (108)
Q Consensus 91 ~~~~~~~i~v~dit~~ 106 (108)
.|.||.+++|.|+...
T Consensus 138 ~R~ADlIiiVld~~~~ 153 (365)
T COG1163 138 ARNADLIIIVLDVFED 153 (365)
T ss_pred eccCCEEEEEEecCCC
Confidence 8899999999999854
No 261
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.97 E-value=2.7e-09 Score=66.84 Aligned_cols=58 Identities=24% Similarity=0.412 Sum_probs=41.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
+..++++++|.++||||||++++.+..+.. ..+..+.+.....+.++ ..+.+|||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 345799999999999999999999877642 33333444444445553 34789999984
No 262
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.97 E-value=7.3e-09 Score=73.75 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=59.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--Cccc------------------------cc---cCceeeeeEEEEEEECCeE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE------------------------KT---GNTIGVDFSMKTVNIDGKK 69 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--~~~~------------------------~~---~~t~~~~~~~~~~~~~~~~ 69 (108)
...++|+++|..++|||||+.+++.. .... +. +...|.........+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45589999999999999999998741 1000 00 0111222222222333445
Q ss_pred EEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 70 ~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
..+.|.|+||+++|..........+|++++|.|.+.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTA 120 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCC
Confidence 678999999999998777777889999999999763
No 263
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.95 E-value=4.1e-09 Score=77.83 Aligned_cols=85 Identities=21% Similarity=0.215 Sum_probs=55.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCc--ccc----------ccCc---------------------eeeeeEEEEEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF--VEK----------TGNT---------------------IGVDFSMKTVN 64 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~--~~~----------~~~t---------------------~~~~~~~~~~~ 64 (108)
....++|+++|.+++|||||+++++...- ... ...+ +..+.....++
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34458999999999999999999885321 100 0000 01111112223
Q ss_pred ECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecc
Q psy5771 65 IDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 65 ~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
.+ ..++.++|+||+++|..........+|++++|+|.+
T Consensus 101 ~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~ 138 (632)
T PRK05506 101 TP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDAR 138 (632)
T ss_pred cC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECC
Confidence 33 345789999999988655555678999999999975
No 264
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.94 E-value=6e-09 Score=66.47 Aligned_cols=82 Identities=21% Similarity=0.384 Sum_probs=56.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh----------hhhccchH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRTITQ 88 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~ 88 (108)
+...-|+++|.++|||||||+.+.+.+-......|.|.+....-+.++++ +.+.|.||. +....+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 35568999999999999999999997644445566665555555555554 779999983 34455556
Q ss_pred hhccc---CcEEEEEEec
Q psy5771 89 SYYRS---ANGVIIGEIL 103 (108)
Q Consensus 89 ~~~~~---~~~~i~v~di 103 (108)
.|++. -.+++++.|+
T Consensus 99 ~YL~~R~~L~~vvlliD~ 116 (200)
T COG0218 99 EYLEKRANLKGVVLLIDA 116 (200)
T ss_pred HHHhhchhheEEEEEEEC
Confidence 66654 3455566554
No 265
>KOG1191|consensus
Probab=98.94 E-value=3.5e-09 Score=75.03 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=56.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceee--eeEEEEEEECCeEEEEEEeeCCChhh-hcc--------chH
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV--DFSMKTVNIDGKKVKLQIWDTAGQER-FRT--------ITQ 88 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~--------~~~ 88 (108)
..++|+++|.|+||||||+|.+.+.+..- ..|-.|. |-....++++| +++.+.||+|-.+ -.. .-+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsI-VSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSI-VSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceE-eCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 34899999999999999999999886532 3343333 33344555666 5577999999654 111 113
Q ss_pred hhcccCcEEEEEEec
Q psy5771 89 SYYRSANGVIIGEIL 103 (108)
Q Consensus 89 ~~~~~~~~~i~v~di 103 (108)
.-++.+|++++|+|.
T Consensus 344 k~~~~advi~~vvda 358 (531)
T KOG1191|consen 344 KRIERADVILLVVDA 358 (531)
T ss_pred HHHhhcCEEEEEecc
Confidence 347789999999997
No 266
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.93 E-value=9.4e-09 Score=67.19 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=52.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccC-----------------------ceeeeeEE---------------EEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGN-----------------------TIGVDFSM---------------KTVN 64 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~-----------------------t~~~~~~~---------------~~~~ 64 (108)
||+++|+.++|||||+.+|..+.|.+.... ..|.+..- ..++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997766431110 11111000 1112
Q ss_pred ECCeEEEEEEeeCCChhhhccchHhhcc--cCcEEEEEEeccc
Q psy5771 65 IDGKKVKLQIWDTAGQERFRTITQSYYR--SANGVIIGEILCF 105 (108)
Q Consensus 65 ~~~~~~~l~l~D~~g~~~~~~~~~~~~~--~~~~~i~v~dit~ 105 (108)
.. ...+.+.|+||+++|.......+. .+|++++|.|...
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~ 121 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA 121 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC
Confidence 22 245789999999988654444443 6899999999753
No 267
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.92 E-value=3.1e-09 Score=74.70 Aligned_cols=84 Identities=20% Similarity=0.171 Sum_probs=59.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChh----------hhccch-
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----------RFRTIT- 87 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~- 87 (108)
..+||+++|.|+||||||+|++++.+-.- ...+-...+.....++++++. +.+.||+|.. .|...+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999876421 122322234555666677765 6799999943 232222
Q ss_pred HhhcccCcEEEEEEeccc
Q psy5771 88 QSYYRSANGVIIGEILCF 105 (108)
Q Consensus 88 ~~~~~~~~~~i~v~dit~ 105 (108)
...+..++++++|.|.+.
T Consensus 255 ~~aI~~a~vvllviDa~~ 272 (444)
T COG1160 255 LKAIERADVVLLVIDATE 272 (444)
T ss_pred HhHHhhcCEEEEEEECCC
Confidence 234778999999999874
No 268
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.92 E-value=2.1e-08 Score=73.90 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=53.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccc---cCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc-------cc-
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT---GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-------TI- 86 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~- 86 (108)
-+..++|+|+|.+||||||++|.+++....... ..|.. ........++ ..+.++||||..... .+
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 356789999999999999999999987532211 12222 2222223444 458899999965321 11
Q ss_pred --hHhhcc--cCcEEEEEEeccc
Q psy5771 87 --TQSYYR--SANGVIIGEILCF 105 (108)
Q Consensus 87 --~~~~~~--~~~~~i~v~dit~ 105 (108)
...++. .+|++|+|..++.
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~ 213 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDM 213 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCC
Confidence 222333 5899999998764
No 269
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.92 E-value=1.1e-08 Score=74.85 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=60.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh------ccchHhhcc--
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF------RTITQSYYR-- 92 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~------~~~~~~~~~-- 92 (108)
..+++++|.||||||||.|++.+....-..-|-+.+|...-.+..++++ +++.|.||--.. +...+.|+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 3579999999999999999999876544444555555666666666655 789999994322 233344443
Q ss_pred cCcEEEEEEecccc
Q psy5771 93 SANGVIIGEILCFY 106 (108)
Q Consensus 93 ~~~~~i~v~dit~~ 106 (108)
.+|+++-|.|-||.
T Consensus 81 ~~D~ivnVvDAtnL 94 (653)
T COG0370 81 KPDLIVNVVDATNL 94 (653)
T ss_pred CCCEEEEEcccchH
Confidence 56999999999985
No 270
>PLN03127 Elongation factor Tu; Provisional
Probab=98.92 E-value=1.2e-08 Score=72.72 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=57.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC------Cc----------cccccCceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG------DF----------VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~------~~----------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
....++|+++|..++|||||+.++.+- .. .++..+.+ +.......+.....++.+.|+||++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGi--Ti~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGI--TIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCc--eeeeeEEEEcCCCeEEEEEECCCcc
Confidence 345689999999999999999998621 10 11111222 2222333343344567899999998
Q ss_pred hhccchHhhcccCcEEEEEEeccc
Q psy5771 82 RFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+|......-...+|++++|.|.+.
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~ 159 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPD 159 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCC
Confidence 876555555667999999999753
No 271
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.91 E-value=1.2e-08 Score=69.28 Aligned_cols=85 Identities=16% Similarity=0.086 Sum_probs=53.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh-----hhccchHh---h
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-----RFRTITQS---Y 90 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~-----~~~~~~~~---~ 90 (108)
+....|+|.|.|+||||||++.+...+..-..-|-.....+.-.+..++ .++++.||||.- +.+.+-.+ .
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 3556899999999999999999998764322223211234444444443 468899999942 11111111 1
Q ss_pred cc-cCcEEEEEEeccc
Q psy5771 91 YR-SANGVIIGEILCF 105 (108)
Q Consensus 91 ~~-~~~~~i~v~dit~ 105 (108)
++ -+++++|+||.|-
T Consensus 244 L~hl~~~IlF~~D~Se 259 (346)
T COG1084 244 LRHLAGVILFLFDPSE 259 (346)
T ss_pred HHHhcCeEEEEEcCcc
Confidence 22 3689999999874
No 272
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.90 E-value=9.1e-09 Score=63.56 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=37.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
..++|+++|.+|||||||++++.+..... ..++.|.+.....+..+. .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 35789999999999999999999765422 233333333333333322 267999998
No 273
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.88 E-value=8.5e-09 Score=64.90 Aligned_cols=56 Identities=29% Similarity=0.469 Sum_probs=39.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
..++++++|.++||||||++++.+..... ..+..|.+.....+..+. .+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 34899999999999999999999865422 234444444444444432 478999998
No 274
>KOG1707|consensus
Probab=98.87 E-value=1.2e-08 Score=73.48 Aligned_cols=93 Identities=11% Similarity=0.188 Sum_probs=72.5
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 14 ~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
.....+..+++.++|+.++|||.|++.|+++.+...+..+....+....+...++.-.+.+.|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 3455678899999999999999999999999887777677666666677777777777888888765 333232222 78
Q ss_pred CcEEEEEEeccccCC
Q psy5771 94 ANGVIIGEILCFYGT 108 (108)
Q Consensus 94 ~~~~i~v~dit~~~s 108 (108)
||+++++||.+++.|
T Consensus 496 cDv~~~~YDsS~p~s 510 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRS 510 (625)
T ss_pred eeeEEEecccCCchH
Confidence 999999999998764
No 275
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.87 E-value=4.7e-09 Score=72.91 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=43.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeee--EEEEEEECCeEEEEEEeeCCChhhhccchHhh-----
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDF--SMKTVNIDGKKVKLQIWDTAGQERFRTITQSY----- 90 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~----- 90 (108)
...++|.|+|++|+|||||||.+.+-.-. +.-.++--.+. ........ +.-.+.+||.||......-...|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 35689999999999999999999752111 11112111111 11111211 12247899999965443333333
Q ss_pred cccCcEEEEEEeccc
Q psy5771 91 YRSANGVIIGEILCF 105 (108)
Q Consensus 91 ~~~~~~~i~v~dit~ 105 (108)
+..-|.+|++.+-.+
T Consensus 112 ~~~yD~fiii~s~rf 126 (376)
T PF05049_consen 112 FYRYDFFIIISSERF 126 (376)
T ss_dssp GGG-SEEEEEESSS-
T ss_pred ccccCEEEEEeCCCC
Confidence 456799999877543
No 276
>PRK00007 elongation factor G; Reviewed
Probab=98.86 E-value=8.9e-09 Score=76.77 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=58.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc--CCccc----------------cccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRS--GDFVE----------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
+...+|+++|..++|||||+++++. +.... +....+..+.....+.+++ .++++.||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 3456999999999999999999973 21100 0111222222233444444 56889999999
Q ss_pred hhhccchHhhcccCcEEEEEEecc
Q psy5771 81 ERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
.+|.......++.+|++++|.|.+
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~ 109 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAV 109 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECC
Confidence 888766777789999999999965
No 277
>KOG0090|consensus
Probab=98.86 E-value=3.9e-09 Score=67.87 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=57.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcc---cCcEEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR---SANGVII 99 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~---~~~~~i~ 99 (108)
.|+++|..++|||+|..++..+.+...+ +++. -......+++.. +.+.|.||+.+.+.-...+++ .+-+++|
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-tSie--pn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTV-TSIE--PNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCee-eeec--cceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 6999999999999999999999665433 2222 233344444433 789999999998877777777 7899999
Q ss_pred EEecc
Q psy5771 100 GEILC 104 (108)
Q Consensus 100 v~dit 104 (108)
|.|-.
T Consensus 115 VVDSa 119 (238)
T KOG0090|consen 115 VVDSA 119 (238)
T ss_pred EEecc
Confidence 99843
No 278
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.83 E-value=2.5e-08 Score=67.37 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=41.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
...++++++|.++||||||++++.+..... ..+..|.+.....+..+. .+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 345899999999999999999999876432 233444444444555543 37899999963
No 279
>KOG3886|consensus
Probab=98.82 E-value=1.8e-09 Score=70.33 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcc---ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh-----ccchHhhccc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFV---EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF-----RTITQSYYRS 93 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-----~~~~~~~~~~ 93 (108)
-||+++|.+|+|||++-.-+..+-.. ....+|+. +..-.+.+-| ...|++||++||+.+ ....+..++.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tid--veHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATID--VEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcce--eeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 48999999999999986655533211 11224444 3333333333 466899999999854 2344667899
Q ss_pred CcEEEEEEecccc
Q psy5771 94 ANGVIIGEILCFY 106 (108)
Q Consensus 94 ~~~~i~v~dit~~ 106 (108)
.++++++||+...
T Consensus 82 V~vli~vFDves~ 94 (295)
T KOG3886|consen 82 VQVLIYVFDVESR 94 (295)
T ss_pred heeeeeeeeccch
Confidence 9999999999754
No 280
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.82 E-value=1.9e-08 Score=67.58 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=40.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
..++++++|.+|||||||++++.+..... ..+..|.+.....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 45899999999999999999999765432 223334344444555543 3689999997
No 281
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.81 E-value=2.4e-08 Score=75.90 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=60.8
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCcc--c---------cccC---ceeeeeE--EEEEEE--------------
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV--E---------KTGN---TIGVDFS--MKTVNI-------------- 65 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~--~---------~~~~---t~~~~~~--~~~~~~-------------- 65 (108)
..++...+|+++|..++|||||+.+++...-. . ++.+ ..+.++. ...+.+
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 34556679999999999999999999753210 0 0000 0111111 111222
Q ss_pred CCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 66 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
++....+++.|+||+.+|.......++.+|+.|+|.|.+.
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~ 133 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC
Confidence 2235678999999999998878888999999999999763
No 282
>PRK12740 elongation factor G; Reviewed
Probab=98.80 E-value=1.5e-08 Score=75.25 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=53.9
Q ss_pred EcCCCCCHHHHHHHHHcCCcc--------c----------cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchH
Q psy5771 27 IGDCGVGKTCVVHRFRSGDFV--------E----------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQ 88 (108)
Q Consensus 27 vG~~~vGKtsli~~~~~~~~~--------~----------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~ 88 (108)
+|..++|||||+++++...-. . +....+.+......+.++ ...+.+||++|+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 589999999999999632110 0 001111112333344444 46789999999998887788
Q ss_pred hhcccCcEEEEEEeccc
Q psy5771 89 SYYRSANGVIIGEILCF 105 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~ 105 (108)
.+++.+|++++|+|.+.
T Consensus 79 ~~l~~aD~vllvvd~~~ 95 (668)
T PRK12740 79 RALRVLDGAVVVVCAVG 95 (668)
T ss_pred HHHHHhCeEEEEEeCCC
Confidence 89999999999999875
No 283
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.80 E-value=1.5e-08 Score=64.39 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc-------cccCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
.+++++|.+|||||||++.+.+..... ...+..|.+.....+.++. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 589999999999999999999754311 1122223334444555543 378999998
No 284
>PTZ00416 elongation factor 2; Provisional
Probab=98.79 E-value=3.3e-08 Score=75.10 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCc--cc---------cccC---ceeeeeE--EEEEEEC--------CeEEEEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF--VE---------KTGN---TIGVDFS--MKTVNID--------GKKVKLQ 73 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~--~~---------~~~~---t~~~~~~--~~~~~~~--------~~~~~l~ 73 (108)
.+...+|+++|..++|||||+.+++...- .. ++.+ ..|+... ...+.+. ++...+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45556999999999999999999985211 00 0000 0111111 1122222 2256789
Q ss_pred EeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 74 IWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 74 l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+.||||+.+|.......++.+|++|+|.|.+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~ 127 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVE 127 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC
Confidence 99999999988777888999999999999654
No 285
>KOG0082|consensus
Probab=98.74 E-value=4e-08 Score=67.70 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=41.7
Q ss_pred CceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 52 NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 52 ~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
||.| .....+.+.+ ..+.++|.+||..-+.-|.+++.+++++|||.++|.|+
T Consensus 181 ~T~G--I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYd 232 (354)
T KOG0082|consen 181 PTTG--IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYD 232 (354)
T ss_pred CcCC--eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhh
Confidence 4455 3334445544 66889999999999999999999999999999999885
No 286
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.74 E-value=2.6e-08 Score=74.75 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=60.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCc--cc---------cccC-------ceeeeeEEEEEEECCeEEEEEEeeCC
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDF--VE---------KTGN-------TIGVDFSMKTVNIDGKKVKLQIWDTA 78 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~--~~---------~~~~-------t~~~~~~~~~~~~~~~~~~l~l~D~~ 78 (108)
..+..-+|+++|..++|||||+.+++...- .. ++.+ |+........+.+++....+++.|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 345556899999999999999999974211 00 0000 11101111122334456788999999
Q ss_pred ChhhhccchHhhcccCcEEEEEEecc
Q psy5771 79 GQERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
|+.+|.......++.+|++++|.|..
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~ 121 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAV 121 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECC
Confidence 99999888888899999999999965
No 287
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.72 E-value=4.7e-08 Score=67.05 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=44.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
...++++++|-++||||||||++++.... ...+..|.+.....+.++.. +.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 34578999999999999999999987653 23444465566666666553 789999994
No 288
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.68 E-value=1e-07 Score=65.64 Aligned_cols=63 Identities=24% Similarity=0.488 Sum_probs=49.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCcccc----------ccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
....++|+++|++|.|||||++.+++...... ..+++.+..+...+.-++..+.|++.||+|-
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 46789999999999999999999987632211 3466666666667777888999999999984
No 289
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.66 E-value=2.8e-07 Score=57.10 Aligned_cols=34 Identities=29% Similarity=0.271 Sum_probs=27.0
Q ss_pred EEEeeCCChhh----hccchHhhcccCcEEEEEEeccc
Q psy5771 72 LQIWDTAGQER----FRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 72 l~l~D~~g~~~----~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+.|+|+||... ...++..|++.+|++|+|.+.+.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc
Confidence 66899999642 33667888999999999998765
No 290
>KOG1547|consensus
Probab=98.62 E-value=3.9e-07 Score=60.06 Aligned_cols=62 Identities=23% Similarity=0.455 Sum_probs=45.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccc---------cccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE---------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
...|+|++||.+|.|||||++.+....... .+..|.++......++-++...+|++.||+|.
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 467999999999999999999876432211 23345554455556666788889999999984
No 291
>KOG2655|consensus
Probab=98.61 E-value=2e-07 Score=64.41 Aligned_cols=63 Identities=22% Similarity=0.460 Sum_probs=46.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCcccc---------ccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK---------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
....+.++++|++|.|||||++.++...+..+ ...+..++.....+.-+|..++|++.||||-
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 45669999999999999999999886644321 1224554555555555788899999999984
No 292
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=8.6e-07 Score=62.03 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=58.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC--Cccc---------------------------cccCceeeeeEEEEEEECCe
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE---------------------------KTGNTIGVDFSMKTVNIDGK 68 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~--~~~~---------------------------~~~~t~~~~~~~~~~~~~~~ 68 (108)
....++++++|+..+|||||+-|++-. .+.+ ......|.++......+.-.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 344589999999999999999998621 1110 01112222233333333334
Q ss_pred EEEEEEeeCCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 69 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
...+.|.|+||+..|..-.-.-..+||+.|||.|..+-
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~ 121 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG 121 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC
Confidence 46789999999888865545556789999999998754
No 293
>KOG0705|consensus
Probab=98.50 E-value=1.3e-07 Score=68.27 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=67.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+|+-+||..++|||+|++||+.+.|..+..|.-+ .+.+++.++++...+-+.|.+|.. ...|..++|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence 347999999999999999999999999887666665 556777778888888899988832 3467788999999
Q ss_pred EEeccccCC
Q psy5771 100 GEILCFYGT 108 (108)
Q Consensus 100 v~dit~~~s 108 (108)
||.+.+..|
T Consensus 102 vf~~~d~~s 110 (749)
T KOG0705|consen 102 VFSVEDEQS 110 (749)
T ss_pred EEEeccccC
Confidence 999987653
No 294
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.50 E-value=9.7e-07 Score=61.47 Aligned_cols=83 Identities=13% Similarity=-0.030 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCc-cc-cccCceeeeeEEEEEEECCe---------------EEEEEEeeCCChhh--
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDF-VE-KTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQER-- 82 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~-- 82 (108)
+|+.++|.+++|||||++.+..... .. .|..+ ..+.....+.+.+. ...+++.|.+|.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypft-Ti~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFT-TIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCC-CCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999999999997764 22 23222 12233334444432 23578999998532
Q ss_pred -----hccchHhhcccCcEEEEEEeccc
Q psy5771 83 -----FRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 83 -----~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
.....-..++.+|+++.|.+...
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 11122335789999999999764
No 295
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.49 E-value=6.7e-07 Score=55.12 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=35.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
...+++++|.++||||||++.+....... ...+.. ......+..+ ..+.+.||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~--t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGT--TTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCc--ccceEEEEec---CCEEEEECCC
Confidence 45789999999999999999999765321 111211 1222233333 2478999998
No 296
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.49 E-value=2.9e-07 Score=57.33 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcccc------ccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEK------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 83 (108)
.++++|.+|||||||+|.+....-... ...-...+.....+..++. ..+.|+||...+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 689999999999999999997632211 0011111123344444332 357899996554
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.48 E-value=1e-06 Score=57.58 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=49.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
....|+++|.+|+|||||++.+....-........|. +. .+.. ...++.+.|++|.. ..+. ...+.+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~--i~~~--~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT--VVTG--KKRRLTFIECPNDI--NAMI-DIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE--EEec--CCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence 3468999999999999999998864211111111220 11 1111 34557899999864 2222 33678999999
Q ss_pred EEeccc
Q psy5771 100 GEILCF 105 (108)
Q Consensus 100 v~dit~ 105 (108)
+.|.+.
T Consensus 110 viDa~~ 115 (225)
T cd01882 110 LIDASF 115 (225)
T ss_pred EEecCc
Confidence 999763
No 298
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.6e-06 Score=60.07 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEE------------C----CeEEEEEEeeCCChh----
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI------------D----GKKVKLQIWDTAGQE---- 81 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~------------~----~~~~~l~l~D~~g~~---- 81 (108)
+++-++|.|+||||||.+.+....-....-|-..++...-.+.+ . -....+++.|.+|.-
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 68999999999999999999977643222232222222222222 1 134678899998742
Q ss_pred hhccchHh---hcccCcEEEEEEecccc
Q psy5771 82 RFRTITQS---YYRSANGVIIGEILCFY 106 (108)
Q Consensus 82 ~~~~~~~~---~~~~~~~~i~v~dit~~ 106 (108)
+=+.+-.. -+|.+|+++-|.++...
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 11223333 37899999999998743
No 299
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.47 E-value=8e-07 Score=63.74 Aligned_cols=82 Identities=18% Similarity=0.331 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC--CeEEEEEEeeCCChhhhccchHhhccc----Cc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID--GKKVKLQIWDTAGQERFRTITQSYYRS----AN 95 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~l~D~~g~~~~~~~~~~~~~~----~~ 95 (108)
-.|+|+|+.++|||||+.+|.+.+ .+.++.+.+|....+.-+ +...++.+|...|...+..+.+..+.. --
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 489999999999999999987654 345677777766555432 224578999999877777666655442 25
Q ss_pred EEEEEEecccc
Q psy5771 96 GVIIGEILCFY 106 (108)
Q Consensus 96 ~~i~v~dit~~ 106 (108)
.+|+|.|++..
T Consensus 103 ~vvIvlDlS~P 113 (472)
T PF05783_consen 103 LVVIVLDLSKP 113 (472)
T ss_pred EEEEEecCCCh
Confidence 77888888753
No 300
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.44 E-value=1.7e-06 Score=53.74 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=42.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 78 (108)
..+||.+.|.|||||||++.++.+.--... -+++ -++..++.-+++.+-+.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvg-Gf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVG-GFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceee-eEEeeeeecCCeEeeeEEEEcc
Confidence 357999999999999999999875422211 2232 3778888888888888888876
No 301
>PRK12288 GTPase RsgA; Reviewed
Probab=98.39 E-value=8.9e-07 Score=61.37 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=34.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCcccc-ccCc---ee--eeeEEEEEEECCeEEEEEEeeCCChhhhc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSGDFVEK-TGNT---IG--VDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~~~~~~-~~~t---~~--~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 84 (108)
++++|.+|||||||+|+++....... ..+. .| .+.....+.+.+. ..+.||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 78999999999999999997643211 1110 01 1122333444322 2489999965543
No 302
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2e-06 Score=61.74 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECC-eEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDG-KKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.=++++|.-.-|||||+..+..........--+.......++..+. ..-.+.|.||||++.|..++.+-..-+|.+++|
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 3689999999999999999998776554333333233344555431 234588999999999999999989999999999
Q ss_pred Eeccc
Q psy5771 101 EILCF 105 (108)
Q Consensus 101 ~dit~ 105 (108)
.++.+
T Consensus 86 Va~dD 90 (509)
T COG0532 86 VAADD 90 (509)
T ss_pred EEccC
Confidence 99864
No 303
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.38 E-value=1.5e-06 Score=60.56 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc----cccCceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE----KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
.+++++|.+|||||||++++.+..... ...+..|.+.....+.+++ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 489999999999999999999753211 1222223223333444422 25699999964
No 304
>PRK13796 GTPase YqeH; Provisional
Probab=98.37 E-value=1e-06 Score=61.48 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc----cccCceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE----KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
.+++++|.+|||||||+|++....... ...+..|.+.....+.+++. ..++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 479999999999999999998543111 11222232333444444332 3699999963
No 305
>PRK12289 GTPase RsgA; Reviewed
Probab=98.36 E-value=9.9e-07 Score=61.24 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCcee-------eeeEEEEEEECCeEEEEEEeeCCChhhhc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG-------VDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~-------~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 84 (108)
.++|+|.+|||||||+|.+....-... ....+ .+.....+...+. ..+.||||-..+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t-~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRV-GKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccc-ccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccccc
Confidence 379999999999999999996543211 11111 1223344444322 2589999965443
No 306
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.35 E-value=2.2e-06 Score=56.08 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=49.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC--Ccccc---ccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc------chHh
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG--DFVEK---TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT------ITQS 89 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~--~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~ 89 (108)
..-|.++|++++|||+|+|++.+. .|... ..-|.|+-.....+.. +....+.+.||+|...... ....
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 346889999999999999999988 66422 2234553333222221 2346789999999653322 1122
Q ss_pred hccc--CcEEEEEEec
Q psy5771 90 YYRS--ANGVIIGEIL 103 (108)
Q Consensus 90 ~~~~--~~~~i~v~di 103 (108)
.+.. ++++|+..+-
T Consensus 86 ~l~~llss~~i~n~~~ 101 (224)
T cd01851 86 ALATLLSSVLIYNSWE 101 (224)
T ss_pred HHHHHHhCEEEEeccC
Confidence 2333 6777765543
No 307
>KOG1486|consensus
Probab=98.34 E-value=2.8e-06 Score=56.54 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=56.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh------h-ccchHhhcc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER------F-RTITQSYYR 92 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~------~-~~~~~~~~~ 92 (108)
.-+++++|-|.||||||+..+...... ..|.-|. .+...-.+++++.. +++.|.||.-. = .+..-..-+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTT-LtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTT-LTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeE-EEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEee
Confidence 358999999999999999998865432 2233333 34556677787755 77999998321 1 112223467
Q ss_pred cCcEEEEEEeccc
Q psy5771 93 SANGVIIGEILCF 105 (108)
Q Consensus 93 ~~~~~i~v~dit~ 105 (108)
.||.+++|.|.|-
T Consensus 139 taDlilMvLDatk 151 (364)
T KOG1486|consen 139 TADLILMVLDATK 151 (364)
T ss_pred cccEEEEEecCCc
Confidence 8999999999763
No 308
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=2e-06 Score=56.95 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++++|.+|||||||++++....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 68999999999999999999754
No 309
>KOG1491|consensus
Probab=98.30 E-value=5.5e-06 Score=56.93 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=60.0
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECC---------------eEEEEEEeeCCCh
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDG---------------KKVKLQIWDTAGQ 80 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---------------~~~~l~l~D~~g~ 80 (108)
......+++-+||.++||||||++.+.........-|-..++....++.+.. .+..|+++|++|.
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 3344668999999999999999999998765544445444445545555422 3568999999874
Q ss_pred hh----hccchH---hhcccCcEEEEEEecc
Q psy5771 81 ER----FRTITQ---SYYRSANGVIIGEILC 104 (108)
Q Consensus 81 ~~----~~~~~~---~~~~~~~~~i~v~dit 104 (108)
-+ =+.+-. .-+|.+|+++=|.+..
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 32 122222 2367889988877764
No 310
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.30 E-value=1.8e-06 Score=54.22 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=35.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~ 77 (108)
||++.|++|+|||||+.+++..- .....+..| |++..+.-++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999988432 111224555 66666666666766677766
No 311
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.28 E-value=2.5e-06 Score=66.09 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHcCCccccccCceeeeeEEEEEEECC--e---------EE-----EEEEeeCCChhhhccchHhhcccCc
Q psy5771 32 VGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDG--K---------KV-----KLQIWDTAGQERFRTITQSYYRSAN 95 (108)
Q Consensus 32 vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~---------~~-----~l~l~D~~g~~~~~~~~~~~~~~~~ 95 (108)
++||||+..+.+.........-+....-...+..+. + .. .+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 349999999998766443222111111111222211 0 01 2789999999999988888889999
Q ss_pred EEEEEEeccc
Q psy5771 96 GVIIGEILCF 105 (108)
Q Consensus 96 ~~i~v~dit~ 105 (108)
++++|+|+++
T Consensus 552 ivlLVVDa~~ 561 (1049)
T PRK14845 552 LAVLVVDINE 561 (1049)
T ss_pred EEEEEEECcc
Confidence 9999999975
No 312
>KOG3905|consensus
Probab=98.26 E-value=3.9e-06 Score=57.66 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC--CeEEEEEEeeCCChhhhccchHhhcccC----c
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID--GKKVKLQIWDTAGQERFRTITQSYYRSA----N 95 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~l~D~~g~~~~~~~~~~~~~~~----~ 95 (108)
-+|+++|+.++|||||+.++.+.+ .+.+-.|.++....+.-+ +...++.+|-..|+.....+.+..+... .
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 489999999999999999998776 334555555655444432 2345778998889887777777665543 4
Q ss_pred EEEEEEecccc
Q psy5771 96 GVIIGEILCFY 106 (108)
Q Consensus 96 ~~i~v~dit~~ 106 (108)
.+|++.|+++.
T Consensus 130 lviltasms~P 140 (473)
T KOG3905|consen 130 LVILTASMSNP 140 (473)
T ss_pred EEEEEEecCCc
Confidence 67888888864
No 313
>COG2262 HflX GTPases [General function prediction only]
Probab=98.24 E-value=6.3e-06 Score=57.72 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=58.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh--hccchHh------h
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--FRTITQS------Y 90 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--~~~~~~~------~ 90 (108)
.....|.++|-.++|||||+|++.+.........-...+...+.+.+.+ ...+.+-||-|.-+ -..+... -
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3456899999999999999999997654433332222345667777764 23466789988421 1122222 2
Q ss_pred cccCcEEEEEEeccccC
Q psy5771 91 YRSANGVIIGEILCFYG 107 (108)
Q Consensus 91 ~~~~~~~i~v~dit~~~ 107 (108)
...+|.++.|.|.++.+
T Consensus 269 ~~~aDlllhVVDaSdp~ 285 (411)
T COG2262 269 VKEADLLLHVVDASDPE 285 (411)
T ss_pred hhcCCEEEEEeecCChh
Confidence 56899999999999863
No 314
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.19 E-value=4.7e-06 Score=56.41 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccc-cC-----ceeeeeEEEEEEECCeEEEEEEeeCCChhhhc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKT-GN-----TIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~-~~-----t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 84 (108)
-.++++|.+|||||||++.+.+....... .+ ..+.+.....+...+. ..++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46999999999999999999875432211 00 0011222333444321 3589999986543
No 315
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.19 E-value=3.6e-06 Score=57.01 Aligned_cols=59 Identities=25% Similarity=0.328 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc------cccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDF------VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 84 (108)
-.+++|.+|||||||+|++..+.- .+....-...+.....+.+++.. .+.||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 578999999999999999985321 11111111122344555553211 477999966543
No 316
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.19 E-value=3.2e-06 Score=50.46 Aligned_cols=72 Identities=22% Similarity=0.304 Sum_probs=47.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh----hhccchHhhcccCcEEE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSYYRSANGVI 98 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----~~~~~~~~~~~~~~~~i 98 (108)
||+++|..|+|||||.+.+.++... |..|..+++ +++. ..|++|.- ++..-.-....++++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~-------~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF-------NDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeec-------cCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999887643 333433333 2221 45888842 11111233467899999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|-+..+..
T Consensus 70 ~v~~and~~ 78 (148)
T COG4917 70 YVHAANDPE 78 (148)
T ss_pred eeecccCcc
Confidence 988776654
No 317
>KOG3859|consensus
Probab=98.18 E-value=5.6e-06 Score=55.81 Aligned_cols=62 Identities=21% Similarity=0.416 Sum_probs=46.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccc----cCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT----GNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
....++|+.+|+.|.|||||+..+.+..|.... .|++.....+..+.-.+.+++|.+.|+.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 567899999999999999999999988775432 34444333334444456788999999987
No 318
>KOG0468|consensus
Probab=98.17 E-value=1.3e-05 Score=59.50 Aligned_cols=90 Identities=22% Similarity=0.277 Sum_probs=64.7
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCcccc---------cc------CceeeeeEEEEE-----EECCeEEEEEE
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK---------TG------NTIGVDFSMKTV-----NIDGKKVKLQI 74 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~---------~~------~t~~~~~~~~~~-----~~~~~~~~l~l 74 (108)
+..++...++.++|.-+.|||+|+..+....-+.- |. ...|+.....-+ ..+++..-+++
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 45567788999999999999999999875432211 11 111111111111 12567788999
Q ss_pred eeCCChhhhccchHhhcccCcEEEEEEecc
Q psy5771 75 WDTAGQERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 75 ~D~~g~~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
.||+|+-.|.......++.+|++++++|+-
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~ 231 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVA 231 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcc
Confidence 999999999888888899999999999974
No 319
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=7.8e-06 Score=61.18 Aligned_cols=87 Identities=14% Similarity=0.199 Sum_probs=63.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC--Cccc--------------cccCceeeeeEEEEEEECCe-EEEEEEeeCCCh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE--------------KTGNTIGVDFSMKTVNIDGK-KVKLQIWDTAGQ 80 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~--~~~~--------------~~~~t~~~~~~~~~~~~~~~-~~~l~l~D~~g~ 80 (108)
....-+|.+++.-.+|||||..+++-. .... +....-|++.....+....+ ...+++.||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 445568999999999999999998731 1110 01123333444444444444 488999999999
Q ss_pred hhhccchHhhcccCcEEEEEEecc
Q psy5771 81 ERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
-+|.......++-+|+.++|+|..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdav 110 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAV 110 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECC
Confidence 999999999999999999999964
No 320
>KOG1424|consensus
Probab=98.14 E-value=5.6e-06 Score=59.45 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=44.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
.+.|-+||-|+|||||+||.+++.+... ...|.|.+-+-+++.+.. .+.|+|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 7899999999999999999999987653 556666655656666644 2679999995
No 321
>PRK00098 GTPase RsgA; Reviewed
Probab=98.12 E-value=8.4e-06 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++++|.+|||||||++.+.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998654
No 322
>KOG1489|consensus
Probab=98.07 E-value=1.8e-05 Score=54.09 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=50.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc-cccccCceeeeeEEEEEEECCeEEEEEEeeCCChh----hhccchHhh---cccC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSY---YRSA 94 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----~~~~~~~~~---~~~~ 94 (108)
.+-+||.|++|||||++.+...+. ...|.-|. .....-.+.+++. .++.+=|.||.- .-+.+-..| +..|
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTT-L~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTT-LRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceee-eccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 466899999999999999987643 11222111 1122224444432 237888999842 112232333 4568
Q ss_pred cEEEEEEecccc
Q psy5771 95 NGVIIGEILCFY 106 (108)
Q Consensus 95 ~~~i~v~dit~~ 106 (108)
+.++||.|++..
T Consensus 276 ~~l~fVvD~s~~ 287 (366)
T KOG1489|consen 276 KGLLFVVDLSGK 287 (366)
T ss_pred ceEEEEEECCCc
Confidence 999999999875
No 323
>KOG0458|consensus
Probab=98.07 E-value=2.6e-05 Score=56.73 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcC--------------------Ccc---------ccccCceeeeeEEEEEEECC
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSG--------------------DFV---------EKTGNTIGVDFSMKTVNIDG 67 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~--------------------~~~---------~~~~~t~~~~~~~~~~~~~~ 67 (108)
.+...+.++++|.-.+|||||+.+++.. ... ...+...|+........++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3446789999999999999999987631 100 01122334444555555555
Q ss_pred eEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecc
Q psy5771 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 68 ~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
....+.|.|+||+..|..-.-.-...||+.++|.|.+
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s 289 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAS 289 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECC
Confidence 6677899999998877654444466789999999976
No 324
>KOG0462|consensus
Probab=98.04 E-value=1.4e-05 Score=58.00 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=62.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCC-------ccc------cccCceeeeeEEEEEE---ECCeEEEEEEeeCCChhh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD-------FVE------KTGNTIGVDFSMKTVN---IDGKKVKLQIWDTAGQER 82 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~-------~~~------~~~~t~~~~~~~~~~~---~~~~~~~l~l~D~~g~~~ 82 (108)
+..-++.++-.-.-|||||..|++.-. ..+ +.+..-|++...+... .+++.+.|++.||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 555679999999999999999987411 111 1112233333322222 246679999999999999
Q ss_pred hccchHhhcccCcEEEEEEecc
Q psy5771 83 FRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~dit 104 (108)
|.....+.+.-|+++|++.|.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~ 159 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDAS 159 (650)
T ss_pred ccceehehhhhcCceEEEEEcC
Confidence 9999999999999999999964
No 325
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.03 E-value=3.9e-05 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
..+++++|+.|+||||+++.+.+..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 3489999999999999999998764
No 326
>KOG3887|consensus
Probab=98.03 E-value=7.1e-06 Score=54.32 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEE--EEEECCeEEEEEEeeCCChhhhcc---chHhhcccCc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMK--TVNIDGKKVKLQIWDTAGQERFRT---ITQSYYRSAN 95 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~l~l~D~~g~~~~~~---~~~~~~~~~~ 95 (108)
+.+|+++|...+||||+.+...++-.+.+ |.-.+-..+ +-.+.+.-+.+++||.|||-.+-. -....++++.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCc---eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 35699999999999999887776654432 222221111 112233567899999999975532 2345689999
Q ss_pred EEEEEEecc
Q psy5771 96 GVIIGEILC 104 (108)
Q Consensus 96 ~~i~v~dit 104 (108)
++++|.|-.
T Consensus 104 ALifvIDaQ 112 (347)
T KOG3887|consen 104 ALIFVIDAQ 112 (347)
T ss_pred eEEEEEech
Confidence 999999864
No 327
>KOG1145|consensus
Probab=98.02 E-value=2.9e-05 Score=56.51 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=60.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccC--ceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGN--TIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
+...=|.++|.-.-|||||+..|.+......... |.++--+...+. .| -.+.|.||||+..|..++.+--+-+|.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccE
Confidence 3445688999999999999999987765332111 222112333333 44 457899999999999999998899999
Q ss_pred EEEEEecc
Q psy5771 97 VIIGEILC 104 (108)
Q Consensus 97 ~i~v~dit 104 (108)
+++|...-
T Consensus 228 vVLVVAad 235 (683)
T KOG1145|consen 228 VVLVVAAD 235 (683)
T ss_pred EEEEEEcc
Confidence 99998653
No 328
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.01 E-value=2.1e-05 Score=56.31 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC--Cccc------------cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccch
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG--DFVE------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT 87 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~--~~~~------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 87 (108)
-+|.++-.-.-|||||+..++.. .|.+ ......|++...+.-.+..+..++++.||||+..|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 47999999999999999998853 2221 112234445555555555566889999999999999999
Q ss_pred HhhcccCcEEEEEEecc
Q psy5771 88 QSYYRSANGVIIGEILC 104 (108)
Q Consensus 88 ~~~~~~~~~~i~v~dit 104 (108)
...+.=.|+++++.|..
T Consensus 86 ERvl~MVDgvlLlVDA~ 102 (603)
T COG1217 86 ERVLSMVDGVLLLVDAS 102 (603)
T ss_pred hhhhhhcceEEEEEEcc
Confidence 99999999999999964
No 329
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.5e-05 Score=56.51 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--CCcc--------------c----cccCceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS--GDFV--------------E----KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~--~~~~--------------~----~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
-...++-.|.+|||||...++- +... . +....-|+...+-...++.....++|.||||++
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 4688999999999999998751 1110 0 011122333333333334445668999999999
Q ss_pred hhccchHhhcccCcEEEEEEec
Q psy5771 82 RFRTITQSYYRSANGVIIGEIL 103 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~di 103 (108)
+|..-.-+-+..+|..++|.|.
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDa 114 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDA 114 (528)
T ss_pred ccchhHHHHHHhhheeeEEEec
Confidence 9987777778899999999985
No 330
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.91 E-value=1.2e-05 Score=47.25 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.|+|.|.+||||||+++.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 331
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.90 E-value=4.2e-05 Score=54.99 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=56.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCC---cccccc--CceeeeeEEEE----------E---EEC------------C
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD---FVEKTG--NTIGVDFSMKT----------V---NID------------G 67 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~---~~~~~~--~t~~~~~~~~~----------~---~~~------------~ 67 (108)
....++|.++|.-..|||||+..+.+-. +.++-. -|+..-|.... . ... +
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3456899999999999999999998532 111110 11111111100 0 000 0
Q ss_pred ----eEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 68 ----KKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 68 ----~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
....+.+.|+||+++|......-...+|++++|.|...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~ 152 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANE 152 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 01357899999999987665666778999999999874
No 332
>PRK08118 topology modulation protein; Reviewed
Probab=97.87 E-value=1.5e-05 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
||+|+|.+|+|||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999998854
No 333
>KOG0461|consensus
Probab=97.84 E-value=0.00017 Score=50.19 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=52.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcC----CccccccC-----ceeeeeEEEEEEE-----CCeEEEEEEeeCCChhh
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSG----DFVEKTGN-----TIGVDFSMKTVNI-----DGKKVKLQIWDTAGQER 82 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~----~~~~~~~~-----t~~~~~~~~~~~~-----~~~~~~l~l~D~~g~~~ 82 (108)
.++..+++-++|.-.+|||+|.+++..- .|...... |...-|..-.+.. .+++.++.+.|+||+..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 3455699999999999999999998742 33322111 2211222222211 45678889999999864
Q ss_pred hccchHhhccc---CcEEEEEEecc
Q psy5771 83 FRTITQSYYRS---ANGVIIGEILC 104 (108)
Q Consensus 83 ~~~~~~~~~~~---~~~~i~v~dit 104 (108)
. .+..+.+ .|..++|.|++
T Consensus 83 L---IRtiiggaqiiDlm~lviDv~ 104 (522)
T KOG0461|consen 83 L---IRTIIGGAQIIDLMILVIDVQ 104 (522)
T ss_pred H---HHHHHhhhheeeeeeEEEehh
Confidence 4 3333333 46677888875
No 334
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.82 E-value=1.9e-05 Score=50.00 Aligned_cols=22 Identities=18% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
||+|+|.+|+||||+..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999876
No 335
>PRK07261 topology modulation protein; Provisional
Probab=97.81 E-value=2.1e-05 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
||+|+|.+|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998744
No 336
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=0.0001 Score=53.03 Aligned_cols=85 Identities=16% Similarity=0.249 Sum_probs=60.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC-----------Cccc--cccCceeeeeEE--EEEEE---CCeEEEEEEeeCCChh
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG-----------DFVE--KTGNTIGVDFSM--KTVNI---DGKKVKLQIWDTAGQE 81 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~-----------~~~~--~~~~t~~~~~~~--~~~~~---~~~~~~l~l~D~~g~~ 81 (108)
..-++.++-.-.-|||||..|+++. ++.. +.....|++... .++.+ +++.+.|++.||||+-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 3346888888999999999999752 1110 111222323322 22332 4578999999999999
Q ss_pred hhccchHhhcccCcEEEEEEecc
Q psy5771 82 RFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~dit 104 (108)
+|.....+.+..|.+.+++.|.+
T Consensus 88 DFsYEVSRSLAACEGalLvVDAs 110 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDAS 110 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECc
Confidence 99888888899999999999975
No 337
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.77 E-value=2.5e-05 Score=47.08 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy5771 24 VVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~ 42 (108)
|+++|.+|+|||||+.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
No 338
>KOG2484|consensus
Probab=97.69 E-value=4.5e-05 Score=53.48 Aligned_cols=58 Identities=31% Similarity=0.499 Sum_probs=43.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
...+++-|+|-++|||||+|+++....... ..++.|++...+.+..+. .|.|.|.+|.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCce
Confidence 566899999999999999999999876532 334555556666777654 3678999883
No 339
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.68 E-value=2.9e-05 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
||+|.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998754
No 340
>KOG1144|consensus
Probab=97.68 E-value=9.7e-05 Score=55.58 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=58.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccC----ceeeeeEEE----------------EEEECCeEEEEEEeeCCCh
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGN----TIGVDFSMK----------------TVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~----t~~~~~~~~----------------~~~~~~~~~~l~l~D~~g~ 80 (108)
..-||++|.-..|||-|+..+.+......... .+|-+|... ++.+. -+.+.||+|+
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP----g~lvIdtpgh 550 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP----GLLVIDTPGH 550 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC----eeEEecCCCc
Confidence 34699999999999999999987654432222 222222211 11222 2668899999
Q ss_pred hhhccchHhhcccCcEEEEEEecc
Q psy5771 81 ERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
+.|..++.+....||..|+|.||.
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdIm 574 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIM 574 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehh
Confidence 999999999999999999999985
No 341
>KOG0464|consensus
Probab=97.67 E-value=4.5e-05 Score=54.18 Aligned_cols=87 Identities=22% Similarity=0.281 Sum_probs=68.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHc--------CCccc--------cccCceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRS--------GDFVE--------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~--------~~~~~--------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
..+.-+|-++..-.+||||...|++- +.... ......|+...+..+.++++..++++.|++|+.
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 34455799999999999999998652 11111 012344566778888888899999999999999
Q ss_pred hhccchHhhcccCcEEEEEEecc
Q psy5771 82 RFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~dit 104 (108)
.|+.....++|--|+++.|||-+
T Consensus 114 df~leverclrvldgavav~das 136 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDAS 136 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEecc
Confidence 99999999999999999999965
No 342
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.66 E-value=4.9e-05 Score=44.92 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|++.|++|+|||++++.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998865
No 343
>PRK06217 hypothetical protein; Validated
Probab=97.63 E-value=6e-05 Score=47.68 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+|+|+|.+|+|||||..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 344
>KOG2485|consensus
Probab=97.61 E-value=0.00016 Score=49.37 Aligned_cols=62 Identities=21% Similarity=0.405 Sum_probs=37.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccc----cccCceeeeeEE-EEEEECCeEEEEEEeeCCCh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE----KTGNTIGVDFSM-KTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~----~~~~t~~~~~~~-~~~~~~~~~~~l~l~D~~g~ 80 (108)
.+..++++|+|-||||||||++.+....... ...+..|+.... ..+.+..+.. +.+.|++|-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~-vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPP-VYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCc-eEEecCCCc
Confidence 4456899999999999999999876422111 112222222222 2345544332 678899984
No 345
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=7.4e-05 Score=43.90 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFV 47 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~ 47 (108)
.++++|++|+|||+++..++..-..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCC
Confidence 6899999999999999999876543
No 346
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.60 E-value=6.3e-05 Score=44.29 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|+|.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988754
No 347
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.59 E-value=6.3e-05 Score=45.31 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998874
No 348
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.59 E-value=0.00046 Score=41.80 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 349
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.58 E-value=8.8e-05 Score=39.74 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999998855
No 350
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.56 E-value=0.00032 Score=48.51 Aligned_cols=81 Identities=14% Similarity=0.044 Sum_probs=46.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCc-cccccCceeeeeEEEEEEECCeEEEEEEeeCCChh----hhccchHhh---cccCc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSY---YRSAN 95 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----~~~~~~~~~---~~~~~ 95 (108)
|-+||.|++|||||++.+...+. ...|.-|.- ...--.+.+. ..-.+.+=|.||.= +=..+-..| +..+.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL-~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTL-VPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccc-cCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 45799999999999999987543 222322211 1111223332 22346788998731 111222333 44578
Q ss_pred EEEEEEecccc
Q psy5771 96 GVIIGEILCFY 106 (108)
Q Consensus 96 ~~i~v~dit~~ 106 (108)
+++.|.|++..
T Consensus 240 vL~hviD~s~~ 250 (369)
T COG0536 240 VLLHVIDLSPI 250 (369)
T ss_pred eeEEEEecCcc
Confidence 99999999854
No 351
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.55 E-value=0.00011 Score=38.65 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
..+|.|+.|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987653
No 352
>PRK03839 putative kinase; Provisional
Probab=97.54 E-value=9.3e-05 Score=46.57 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+|+++|.+|+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 353
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=8.4e-05 Score=49.19 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
+.++|++|||||||++-+.+=
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998753
No 354
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.53 E-value=9.9e-05 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999754
No 355
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.53 E-value=9e-05 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|+|++|+|||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998654
No 356
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.53 E-value=0.0001 Score=47.42 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
++|.++|+.|+|||||++++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999988753
No 357
>KOG0410|consensus
Probab=97.52 E-value=0.00026 Score=48.84 Aligned_cols=84 Identities=11% Similarity=0.113 Sum_probs=51.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh---------hhccchHhhcc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE---------RFRTITQSYYR 92 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~---------~~~~~~~~~~~ 92 (108)
--|.++|-.++|||||++.+.......+..--...+.........+. -.+-+-||-|.- .|.... .-..
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL-eeVa 256 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL-EEVA 256 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH-HHHh
Confidence 36899999999999999999965543332211111222223333322 235577888842 122111 1256
Q ss_pred cCcEEEEEEeccccC
Q psy5771 93 SANGVIIGEILCFYG 107 (108)
Q Consensus 93 ~~~~~i~v~dit~~~ 107 (108)
.+|.++=|.|+|+..
T Consensus 257 eadlllHvvDiShP~ 271 (410)
T KOG0410|consen 257 EADLLLHVVDISHPN 271 (410)
T ss_pred hcceEEEEeecCCcc
Confidence 899999999999864
No 358
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.52 E-value=0.00016 Score=46.71 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=22.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+....-|+|+|++|+|||||++.+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 344557889999999999999999754
No 359
>PRK14530 adenylate kinase; Provisional
Probab=97.52 E-value=9.9e-05 Score=47.84 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+|+|.+|+||||+.+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998864
No 360
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.52 E-value=0.00034 Score=49.90 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.+-|.++|+.++|||||+++|++.
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhh
Confidence 3478999999999999999999976
No 361
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.51 E-value=0.00011 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999887653
No 362
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.50 E-value=8.9e-05 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
-.++|.|++|+|||+|++++..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998764
No 363
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00038 Score=51.40 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=45.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
.+.++-+.++|++|+|||||+..+...-.........| ...-+.++.-++.+++++.+ ...+.+ .-+-||.+
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~D--l~~miD-vaKIaDLV 137 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPSD--LHQMID-VAKIADLV 137 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChHH--HHHHHh-HHHhhhee
Confidence 44567788999999999999998774321110001111 11122456667889988832 332322 23457778
Q ss_pred EEEEec
Q psy5771 98 IIGEIL 103 (108)
Q Consensus 98 i~v~di 103 (108)
++..|-
T Consensus 138 lLlIdg 143 (1077)
T COG5192 138 LLLIDG 143 (1077)
T ss_pred EEEecc
Confidence 777663
No 364
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.49 E-value=0.00011 Score=44.47 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 365
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.48 E-value=0.00012 Score=48.46 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+..++++|+|.+|+|||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45589999999999999999988744
No 366
>KOG1954|consensus
Probab=97.47 E-value=0.0011 Score=46.75 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=54.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcccc---ccCceeeeeEEEEEEE------CCeE--------------------
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK---TGNTIGVDFSMKTVNI------DGKK-------------------- 69 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~---~~~t~~~~~~~~~~~~------~~~~-------------------- 69 (108)
+.+.=|+++|.-..||||+|+.++.++|+.- ..||.. ++.....- .|..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 4445699999999999999999999988642 223332 22221111 1110
Q ss_pred -------------EEEEEeeCCChh-----------hhccchHhhcccCcEEEEEEec
Q psy5771 70 -------------VKLQIWDTAGQE-----------RFRTITQSYYRSANGVIIGEIL 103 (108)
Q Consensus 70 -------------~~l~l~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~di 103 (108)
-.+.+.|++|.- .|......+...+|.|+++||-
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~ 191 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDA 191 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEech
Confidence 136688999832 2344556677889999999985
No 367
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.47 E-value=0.00012 Score=45.87 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.|+|+|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999864
No 368
>PF13173 AAA_14: AAA domain
Probab=97.47 E-value=0.00011 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDF 46 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~ 46 (108)
-+++.|+.+||||||+.+++....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999986543
No 369
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.46 E-value=0.00012 Score=43.42 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
-+++.|++|+|||++++++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998653
No 370
>PRK14532 adenylate kinase; Provisional
Probab=97.46 E-value=0.00013 Score=46.19 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+++|.+|+||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 371
>PRK13949 shikimate kinase; Provisional
Probab=97.46 E-value=0.00014 Score=45.62 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+|+|.+|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 372
>PF05729 NACHT: NACHT domain
Probab=97.46 E-value=0.00012 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
++|.|++|+|||+++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998854
No 373
>KOG4273|consensus
Probab=97.45 E-value=0.00062 Score=45.61 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=50.4
Q ss_pred EEEEEcCCCC--CHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 23 KVVLIGDCGV--GKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 23 ki~lvG~~~v--GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
-++++|-+|| ||-+|+.++...+|..+....-..+++-.++........+.+.-.+-...+.......-....+++++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmv 85 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMV 85 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEE
Confidence 4689999999 99999999998888765555544556555443322222233332222121211111223345799999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||++.+.
T Consensus 86 fdlse~s 92 (418)
T KOG4273|consen 86 FDLSEKS 92 (418)
T ss_pred Eeccchh
Confidence 9998753
No 374
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00013 Score=47.60 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++++|++|+|||||++.+-.=+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58999999999999999987543
No 375
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00014 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~~ 45 (108)
++++|++|||||||++-+.+=+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999988643
No 376
>PRK10646 ADP-binding protein; Provisional
Probab=97.41 E-value=0.0019 Score=40.01 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|++-|+-|+|||||.+.++..
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998754
No 377
>KOG3347|consensus
Probab=97.40 E-value=0.00014 Score=44.92 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
+...||+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4556999999999999999999874
No 378
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.40 E-value=0.00017 Score=45.98 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
=|+|+|++|+||+||+++++..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999865
No 379
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.40 E-value=0.00017 Score=42.78 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
-+++.|++|+|||+|++.+...-
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988653
No 380
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.40 E-value=0.00016 Score=45.45 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
.|+++|.+|+||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999887
No 381
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.40 E-value=0.00023 Score=45.90 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...-|.++|.+|+|||||++.+.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999874
No 382
>PRK13695 putative NTPase; Provisional
Probab=97.39 E-value=0.00018 Score=45.07 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
+||++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998653
No 383
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.39 E-value=0.00051 Score=41.03 Aligned_cols=33 Identities=33% Similarity=0.357 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc--cccccCcee
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIG 55 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~--~~~~~~t~~ 55 (108)
-|++-|+-|+|||||.+.++..-- ....+||..
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~ 51 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFS 51 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT--S----TTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeE
Confidence 489999999999999999875321 123446554
No 384
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.39 E-value=0.00017 Score=43.93 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+++|..++|||||+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 385
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.39 E-value=0.00015 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+|+|+|.+|+||||+...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 386
>PRK00625 shikimate kinase; Provisional
Probab=97.38 E-value=0.0002 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+|+++|.+|+||||+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988643
No 387
>PRK14531 adenylate kinase; Provisional
Probab=97.38 E-value=0.0002 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+|+++|.+|+||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
No 388
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.38 E-value=0.00019 Score=47.23 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+||+|+|.+|+||||+..++...
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998753
No 389
>PHA00729 NTP-binding motif containing protein
Probab=97.37 E-value=0.00022 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+|++.|.+|+|||+|+.++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998754
No 390
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.37 E-value=0.00017 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+.++|++|+|||||++-+..-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999988754
No 391
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.37 E-value=0.00056 Score=44.51 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999988654
No 392
>PRK08233 hypothetical protein; Provisional
Probab=97.37 E-value=0.00019 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.-|++.|.+|+|||||..++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56888999999999999999854
No 393
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00098 Score=46.51 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=53.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcc---------------------------------ccccCceeeeeEEEEEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV---------------------------------EKTGNTIGVDFSMKTVNI 65 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~---------------------------------~~~~~t~~~~~~~~~~~~ 65 (108)
...++++-+|.-.=||||||-|++.+.-. .+.+.-+.++...+.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 34589999999999999999999753110 011122222333333333
Q ss_pred CCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEec
Q psy5771 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEIL 103 (108)
Q Consensus 66 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~di 103 (108)
+. -++.+-||||+++|.+-.-.--.-||+.|++.|.
T Consensus 84 ~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA 119 (431)
T COG2895 84 EK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDA 119 (431)
T ss_pred cc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEec
Confidence 33 3578899999999965444445568888888875
No 394
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.36 E-value=0.00021 Score=41.70 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
.++++|++|+|||||+..+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57999999999999999976
No 395
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.36 E-value=0.00022 Score=47.68 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.-.|++.|.+|+||||+++.++..
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCccccchHHHHHhhh
Confidence 358999999999999999999864
No 396
>PRK02496 adk adenylate kinase; Provisional
Probab=97.35 E-value=0.00024 Score=44.82 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+|+++|.+|+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 397
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.34 E-value=0.0004 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+++++|++|+|||||++-+.+-
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999988753
No 398
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.34 E-value=0.00025 Score=45.75 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
....|.++|..|+|||||+++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998754
No 399
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.33 E-value=0.00026 Score=45.56 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
....|.|.|.+|+|||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988753
No 400
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00023 Score=45.31 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.=++|.|++|||||||++.+....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 358899999999999999998765
No 401
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.33 E-value=0.00022 Score=45.52 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|.|.|.+|+|||||++.+..-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998653
No 402
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.32 E-value=0.00022 Score=45.63 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|+|+|++|+|||||++.+...
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998864
No 403
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.32 E-value=0.0002 Score=46.26 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
||+|+|.+|+||||+..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 404
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.32 E-value=0.00023 Score=44.74 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~ 43 (108)
|+++|.+|+||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998875
No 405
>KOG0066|consensus
Probab=97.31 E-value=0.00098 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+|++||+.|||||||+.-+++.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcC
Confidence 48999999999999999988865
No 406
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.31 E-value=0.00026 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+|+++|.+|+|||||...+...
T Consensus 6 ~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 7999999999999999998743
No 407
>PLN02200 adenylate kinase family protein
Probab=97.31 E-value=0.0004 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+.|+|+|.+|+||||+..++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 408
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.31 E-value=0.00024 Score=47.52 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~ 43 (108)
++++|+.|+|||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999875
No 409
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.30 E-value=0.00029 Score=44.59 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
.+.++|+.|+|||||++.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999875
No 410
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.29 E-value=0.0002 Score=44.27 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|+++|.+|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999988754
No 411
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.29 E-value=0.0012 Score=46.55 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=38.5
Q ss_pred EEEEEE-CCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 60 MKTVNI-DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 60 ~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
...+.+ ++ ..+.++|.+|+..-+.-|..++.+++++|||.+++.++
T Consensus 227 e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~yd 273 (389)
T PF00503_consen 227 EIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYD 273 (389)
T ss_dssp EEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGG
T ss_pred EEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchh
Confidence 334444 43 45789999999999999999999999999999999875
No 412
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.29 E-value=0.0003 Score=44.67 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.++++|++|+|||||++.+++-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999988754
No 413
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.28 E-value=0.0003 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 414
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00028 Score=44.42 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
+|++.|.||+||||+..++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 79999999999999999987
No 415
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00028 Score=46.56 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999876
No 416
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.26 E-value=0.00041 Score=43.48 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..-|++.|.+|+||||+++.+..
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999988764
No 417
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00028 Score=49.15 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~~ 45 (108)
+.++|++||||||+++.+.+=+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999988644
No 418
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00029 Score=45.63 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-++++|++|+|||||++-..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 478999999999999998775
No 419
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.25 E-value=0.00034 Score=45.22 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 420
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.25 E-value=0.0021 Score=39.56 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
=|++-|+=|+|||||.+-+..+
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~ 48 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKG 48 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHH
Confidence 4788999999999999998854
No 421
>PRK13947 shikimate kinase; Provisional
Probab=97.23 E-value=0.00035 Score=43.43 Aligned_cols=21 Identities=48% Similarity=0.656 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+++|.+|+||||+...+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998875
No 422
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.0011 Score=43.97 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998754
No 423
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.23 E-value=0.00037 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 424
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.23 E-value=0.00033 Score=44.95 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|++.|++|+||||+++.++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987754
No 425
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.22 E-value=0.00036 Score=42.52 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|++.|.+|+||||+.+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999988764
No 426
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.22 E-value=0.00038 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998865
No 427
>KOG1487|consensus
Probab=97.22 E-value=0.0012 Score=44.36 Aligned_cols=80 Identities=18% Similarity=0.082 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh-------ccchHhhccc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF-------RTITQSYYRS 93 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~~~~~~~ 93 (108)
-++-++|-|.+||||++..+.+-..+- .|.-|.- ....-.+.+++ -++++.|.||.-+= ....-..-|.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl-~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTL-TTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeE-EEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 489999999999999999988653211 1111110 11111222333 46889999984211 1112234567
Q ss_pred CcEEEEEEecc
Q psy5771 94 ANGVIIGEILC 104 (108)
Q Consensus 94 ~~~~i~v~dit 104 (108)
|+.+++|.|+-
T Consensus 137 cnli~~vld~~ 147 (358)
T KOG1487|consen 137 CNLIFIVLDVL 147 (358)
T ss_pred ccEEEEEeecc
Confidence 89999999873
No 428
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.22 E-value=0.00039 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
No 429
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.21 E-value=0.00032 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
-++|.|+.|+|||+|++.+....
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCcCCHHHHHHHHHHHh
Confidence 58888999999999999988643
No 430
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.21 E-value=0.00037 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++-+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999988653
No 431
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.21 E-value=0.00039 Score=45.70 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998864
No 432
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.21 E-value=0.0004 Score=44.78 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988864
No 433
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.20 E-value=0.00037 Score=44.18 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988764
No 434
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.20 E-value=0.00042 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
No 435
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.00042 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 436
>PRK14528 adenylate kinase; Provisional
Probab=97.19 E-value=0.00043 Score=44.02 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+++|++|+||||+.+.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998863
No 437
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.18 E-value=0.00038 Score=43.96 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-+.++|.+|+|||||+.+++.
T Consensus 8 ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred EEEEECCCCChHHHHHHHHHH
Confidence 589999999999999999874
No 438
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.18 E-value=0.00037 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+++.|++|+||||+++.+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5889999999999999998765
No 439
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.18 E-value=0.00042 Score=44.88 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+|+|.+|+||||+...+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 440
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.18 E-value=0.00037 Score=42.44 Aligned_cols=21 Identities=43% Similarity=0.580 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+++|.+|+||||+...+..
T Consensus 1 ~i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 441
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00045 Score=44.44 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 442
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.18 E-value=0.00035 Score=40.53 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|.|.|++|+|||+|++.++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999997743
No 443
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00039 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 444
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00046 Score=44.51 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999998864
No 445
>PF13479 AAA_24: AAA domain
Probab=97.17 E-value=0.00035 Score=45.36 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHH
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRF 41 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~ 41 (108)
.+|++|.|++|+|||||+..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 589999999999999999988
No 446
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00046 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998865
No 447
>PRK04040 adenylate kinase; Provisional
Probab=97.17 E-value=0.00047 Score=44.02 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..|+|.|.+|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47899999999999999988654
No 448
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.17 E-value=0.00047 Score=44.40 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 449
>PRK06547 hypothetical protein; Provisional
Probab=97.16 E-value=0.00055 Score=43.12 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
....|+|.|.+|+|||||.+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468888899999999999998753
No 450
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.16 E-value=0.00046 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 451
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.00048 Score=44.68 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998865
No 452
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.16 E-value=0.00045 Score=44.74 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988765
No 453
>KOG2486|consensus
Probab=97.16 E-value=0.0014 Score=44.29 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=37.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccC-ceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGN-TIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
.+....++++|.++||||+||+.+........... +.|......-..++ -.+.+.|.+|
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG 192 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPG 192 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCC
Confidence 45668999999999999999999886544322222 33322222222232 2366889998
No 454
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.16 E-value=0.00089 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
++.++|++|+|||||++-+.+-
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999998864
No 455
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.16 E-value=0.00062 Score=45.44 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+....+++.|++|+|||++++.+..
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 34557899999999999999988864
No 456
>PRK14529 adenylate kinase; Provisional
Probab=97.15 E-value=0.00046 Score=45.27 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
++|+|+|.+|+||||+..++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988764
No 457
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.15 E-value=0.00051 Score=43.80 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998754
No 458
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00053 Score=43.15 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5779999999999999999864
No 459
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.0015 Score=43.76 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++|+|+.|+|||||++.+.+-.
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998754
No 460
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.14 E-value=0.00046 Score=44.39 Aligned_cols=20 Identities=35% Similarity=0.704 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
-|+++|++||||||.+-++.
T Consensus 3 vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHH
Confidence 58999999999999988765
No 461
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.0015 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++|+|..|+|||||++.+.+-.
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998654
No 462
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.14 E-value=0.0005 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++-+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 463
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.14 E-value=0.00052 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 464
>PRK06762 hypothetical protein; Provisional
Probab=97.13 E-value=0.00048 Score=42.67 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|++.|.+|+||||+.+.+...
T Consensus 4 li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988644
No 465
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.00052 Score=44.91 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 466
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.13 E-value=0.00052 Score=42.52 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+++|.+|+||||+...+..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999988765
No 467
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00046 Score=45.23 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999865
No 468
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.13 E-value=0.00052 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999865
No 469
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00052 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 470
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.13 E-value=0.00055 Score=44.10 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988753
No 471
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.12 E-value=0.00045 Score=45.15 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~ 43 (108)
|.+.|.+|+|||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999998774
No 472
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0017 Score=43.24 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 473
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0017 Score=42.95 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999998754
No 474
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.12 E-value=0.0005 Score=43.15 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|++.|.+|+||||+.+.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999998764
No 475
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00053 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.|+|+.|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 476
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.12 E-value=0.00055 Score=45.59 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
+++++|++|+|||||++.+.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 89999999999999999988764
No 477
>PRK14526 adenylate kinase; Provisional
Probab=97.12 E-value=0.00053 Score=44.57 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+|+|.+|+||||+...+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998874
No 478
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.12 E-value=0.0005 Score=44.95 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999998864
No 479
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.11 E-value=0.00056 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998753
No 480
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.11 E-value=0.0005 Score=48.75 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+....+|+|+|.+|+|||||++.+...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998854
No 481
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.11 E-value=0.00053 Score=47.34 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.-+|+++|.+|+|||||++.+...
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~ 185 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAV 185 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 348999999999999999998853
No 482
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.11 E-value=0.00052 Score=44.24 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999998765
No 483
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.11 E-value=0.00052 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998653
No 484
>KOG0467|consensus
Probab=97.10 E-value=0.0014 Score=49.48 Aligned_cols=87 Identities=16% Similarity=0.298 Sum_probs=64.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCC------------cc--ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGD------------FV--EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~------------~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 82 (108)
..+..-+|+++-.-.-|||||+..+.... |. .+...+.|++...-.+..-.+.+.+++.|+||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 44556689999999999999999886321 11 11234555555444444444567899999999999
Q ss_pred hccchHhhcccCcEEEEEEec
Q psy5771 83 FRTITQSYYRSANGVIIGEIL 103 (108)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~di 103 (108)
|........+-+|+.++..|+
T Consensus 85 f~sevssas~l~d~alvlvdv 105 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDV 105 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEee
Confidence 999999999999999999886
No 485
>PRK10908 cell division protein FtsE; Provisional
Probab=97.10 E-value=0.00059 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 486
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.10 E-value=0.00082 Score=43.02 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999888653
No 487
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.10 E-value=0.00053 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999988653
No 488
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.10 E-value=0.00057 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~~ 45 (108)
|+++|++||||+||+.+++...
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999998763
No 489
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.10 E-value=0.0007 Score=44.32 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...+-|.|.|++|+|||||++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998874
No 490
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.10 E-value=0.00058 Score=44.84 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 491
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.09 E-value=0.00062 Score=43.46 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988753
No 492
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.0006 Score=44.78 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999865
No 493
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.09 E-value=0.00056 Score=43.20 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|+|+|++|+||++|.++++..
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999863
No 494
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.09 E-value=0.00066 Score=47.25 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
..+|++.|..|+|||||++.++..-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4689999999999999999998653
No 495
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00061 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.|+|+.|+|||||++.+.+-.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999988653
No 496
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.00046 Score=45.14 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy5771 24 VVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~ 42 (108)
-.++|++|+|||||++.+-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4789999999999999875
No 497
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.08 E-value=0.00056 Score=43.17 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~ 43 (108)
|++.|..|+||||+++++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
No 498
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.08 E-value=0.00093 Score=41.53 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++-+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 499
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.00062 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999864
No 500
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.00063 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
Done!