Query psy5771
Match_columns 108
No_of_seqs 203 out of 1080
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 17:35:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 7.3E-30 2.5E-34 164.4 8.8 91 18-108 10-100 (216)
2 2a5j_A RAS-related protein RAB 99.9 1.1E-26 3.7E-31 145.9 11.5 107 1-107 1-107 (191)
3 2hup_A RAS-related protein RAB 99.9 1.3E-25 4.4E-30 142.4 9.8 94 14-107 22-115 (201)
4 2ew1_A RAS-related protein RAB 99.9 3.7E-25 1.3E-29 140.6 10.6 94 14-107 19-112 (201)
5 2gf9_A RAS-related protein RAB 99.9 8.5E-25 2.9E-29 137.0 11.7 107 1-107 1-108 (189)
6 2oil_A CATX-8, RAS-related pro 99.9 9.3E-25 3.2E-29 137.1 11.1 92 15-106 19-110 (193)
7 3c5c_A RAS-like protein 12; GD 99.9 1.2E-24 4E-29 136.5 10.8 99 7-107 7-105 (187)
8 2il1_A RAB12; G-protein, GDP, 99.9 5.8E-25 2E-29 138.3 8.9 96 12-107 17-112 (192)
9 3q3j_B RHO-related GTP-binding 99.9 1.3E-24 4.4E-29 139.1 10.1 91 16-107 22-112 (214)
10 2o52_A RAS-related protein RAB 99.9 1.4E-24 4.7E-29 137.5 9.7 93 15-107 19-111 (200)
11 3tkl_A RAS-related protein RAB 99.9 5E-24 1.7E-28 133.7 11.6 93 15-107 10-102 (196)
12 1x3s_A RAS-related protein RAB 99.9 4.2E-24 1.4E-28 133.8 11.0 90 17-106 11-100 (195)
13 2f7s_A C25KG, RAS-related prot 99.9 1.4E-24 4.9E-29 138.5 8.9 93 15-107 19-121 (217)
14 1z0f_A RAB14, member RAS oncog 99.9 4.7E-24 1.6E-28 131.7 10.7 91 16-106 10-100 (179)
15 3reg_A RHO-like small GTPase; 99.9 6.4E-24 2.2E-28 133.5 11.2 93 14-107 16-108 (194)
16 2fg5_A RAB-22B, RAS-related pr 99.9 4.6E-24 1.6E-28 134.1 10.6 94 14-107 16-109 (192)
17 2bme_A RAB4A, RAS-related prot 99.9 5.8E-24 2E-28 132.4 10.9 91 17-107 6-96 (186)
18 3tw8_B RAS-related protein RAB 99.9 5.5E-24 1.9E-28 131.6 10.7 92 16-107 4-95 (181)
19 3kkq_A RAS-related protein M-R 99.9 6.1E-24 2.1E-28 132.1 11.0 92 15-107 12-103 (183)
20 2h17_A ADP-ribosylation factor 99.9 2.2E-24 7.5E-29 134.4 8.9 103 1-108 1-103 (181)
21 1wms_A RAB-9, RAB9, RAS-relate 99.9 6.4E-24 2.2E-28 131.2 10.7 90 17-106 3-92 (177)
22 2bcg_Y Protein YP2, GTP-bindin 99.9 6.5E-24 2.2E-28 134.5 11.0 91 17-107 4-94 (206)
23 1z06_A RAS-related protein RAB 99.9 5.3E-24 1.8E-28 133.4 10.4 91 16-106 15-106 (189)
24 2hxs_A RAB-26, RAS-related pro 99.9 1.9E-24 6.6E-29 133.7 8.3 89 19-107 4-93 (178)
25 2fu5_C RAS-related protein RAB 99.9 9.6E-25 3.3E-29 135.8 6.8 91 17-107 4-94 (183)
26 1z2a_A RAS-related protein RAB 99.9 6.9E-24 2.4E-28 129.8 10.5 89 19-107 3-91 (168)
27 1gwn_A RHO-related GTP-binding 99.9 5E-24 1.7E-28 135.7 9.9 90 17-107 24-113 (205)
28 1ek0_A Protein (GTP-binding pr 99.9 1.1E-23 3.9E-28 129.0 11.1 88 20-107 2-89 (170)
29 2y8e_A RAB-protein 6, GH09086P 99.9 1E-23 3.5E-28 130.2 10.8 91 16-106 9-99 (179)
30 1r2q_A RAS-related protein RAB 99.9 1.2E-23 4.1E-28 128.8 10.9 90 18-107 3-92 (170)
31 2efe_B Small GTP-binding prote 99.9 1.4E-23 4.7E-28 130.1 11.1 90 17-106 8-97 (181)
32 3dz8_A RAS-related protein RAB 99.9 2E-25 6.9E-30 140.1 2.8 94 14-107 16-109 (191)
33 1z08_A RAS-related protein RAB 99.9 4.8E-24 1.6E-28 130.9 8.9 90 18-107 3-92 (170)
34 3cpj_B GTP-binding protein YPT 99.9 7.5E-24 2.6E-28 136.0 10.0 91 17-107 9-99 (223)
35 1z0j_A RAB-22, RAS-related pro 99.9 2E-23 6.7E-28 128.0 11.4 90 18-107 3-92 (170)
36 3cbq_A GTP-binding protein REM 99.9 2.3E-24 7.9E-29 136.2 7.4 94 14-107 16-110 (195)
37 2p5s_A RAS and EF-hand domain 99.9 3.8E-24 1.3E-28 135.2 8.4 91 17-107 24-114 (199)
38 1m7b_A RND3/RHOE small GTP-bin 99.9 1E-23 3.6E-28 131.6 10.1 89 18-107 4-92 (184)
39 2h57_A ADP-ribosylation factor 99.9 2.9E-24 1E-28 134.6 7.6 103 1-107 1-104 (190)
40 1zbd_A Rabphilin-3A; G protein 99.9 1.6E-23 5.6E-28 132.3 11.1 91 17-107 4-94 (203)
41 2q3h_A RAS homolog gene family 99.9 1E-23 3.5E-28 133.1 9.9 92 15-107 14-105 (201)
42 2gco_A H9, RHO-related GTP-bin 99.9 2.8E-23 9.5E-28 131.4 11.7 89 18-107 22-110 (201)
43 3t5g_A GTP-binding protein RHE 99.9 1.9E-23 6.4E-28 129.7 10.7 88 19-107 4-91 (181)
44 3ihw_A Centg3; RAS, centaurin, 99.9 1.4E-23 4.8E-28 131.5 9.9 88 13-107 12-99 (184)
45 2fn4_A P23, RAS-related protei 99.9 2.5E-23 8.7E-28 128.6 10.9 89 18-107 6-94 (181)
46 1g16_A RAS-related protein SEC 99.9 8.4E-24 2.9E-28 129.7 8.7 87 20-106 2-88 (170)
47 2g6b_A RAS-related protein RAB 99.9 2.1E-23 7E-28 129.2 10.4 91 16-106 5-96 (180)
48 2atx_A Small GTP binding prote 99.9 1.4E-23 4.7E-28 131.8 9.6 90 17-107 14-103 (194)
49 1vg8_A RAS-related protein RAB 99.9 1.6E-23 5.3E-28 132.5 9.7 89 18-106 5-93 (207)
50 3cph_A RAS-related protein SEC 99.9 3E-23 1E-27 131.7 10.5 91 16-106 15-105 (213)
51 1zd9_A ADP-ribosylation factor 99.9 5.1E-23 1.7E-27 129.0 11.1 103 1-107 1-104 (188)
52 3bc1_A RAS-related protein RAB 99.9 3.2E-23 1.1E-27 129.3 10.1 91 17-107 7-107 (195)
53 4bas_A ADP-ribosylation factor 99.9 5.4E-23 1.8E-27 129.2 10.7 93 12-108 8-101 (199)
54 3l0i_B RAS-related protein RAB 99.9 1.1E-24 3.9E-29 137.6 2.8 98 10-107 22-119 (199)
55 2j0v_A RAC-like GTP-binding pr 99.9 2.9E-23 9.8E-28 132.0 9.0 88 19-107 7-94 (212)
56 3clv_A RAB5 protein, putative; 99.9 4.7E-23 1.6E-27 129.3 9.9 88 19-106 5-129 (208)
57 3gj0_A GTP-binding nuclear pro 99.9 1.6E-23 5.6E-28 134.1 7.7 93 15-107 9-101 (221)
58 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.2E-22 4.2E-27 126.2 11.3 87 20-107 4-90 (186)
59 3oes_A GTPase rhebl1; small GT 99.9 2.8E-23 9.5E-28 131.3 8.4 89 18-107 21-109 (201)
60 1ky3_A GTP-binding protein YPT 99.9 1.6E-23 5.5E-28 129.6 6.7 90 18-107 5-95 (182)
61 2a9k_A RAS-related protein RAL 99.9 6.8E-23 2.3E-27 127.3 9.6 91 16-107 13-103 (187)
62 1c1y_A RAS-related protein RAP 99.9 7E-23 2.4E-27 125.2 8.8 86 21-107 3-88 (167)
63 2j1l_A RHO-related GTP-binding 99.9 6.5E-23 2.2E-27 131.0 8.8 88 19-107 32-119 (214)
64 1oix_A RAS-related protein RAB 99.9 2.4E-22 8.2E-27 126.5 10.9 92 15-106 23-114 (191)
65 2bov_A RAla, RAS-related prote 99.9 1.6E-22 5.4E-27 127.7 9.8 89 18-107 11-99 (206)
66 2iwr_A Centaurin gamma 1; ANK 99.9 1E-22 3.5E-27 126.1 8.8 81 20-107 6-86 (178)
67 2g3y_A GTP-binding protein GEM 99.9 9.6E-23 3.3E-27 130.7 8.7 91 16-107 32-125 (211)
68 2f9l_A RAB11B, member RAS onco 99.9 3.3E-22 1.1E-26 126.3 11.0 88 19-106 3-90 (199)
69 4gzl_A RAS-related C3 botulinu 99.9 1.8E-22 6.2E-27 128.1 9.8 89 18-107 27-115 (204)
70 1kao_A RAP2A; GTP-binding prot 99.9 2.2E-22 7.5E-27 122.7 9.7 86 21-107 3-88 (167)
71 4dsu_A GTPase KRAS, isoform 2B 99.9 3.4E-22 1.2E-26 124.4 10.6 86 20-106 3-88 (189)
72 2fv8_A H6, RHO-related GTP-bin 99.9 2.7E-22 9.2E-27 127.4 10.1 88 19-107 23-110 (207)
73 2yc2_C IFT27, small RAB-relate 99.9 1.7E-23 5.8E-28 132.2 4.3 89 19-107 18-110 (208)
74 1u8z_A RAS-related protein RAL 99.9 3E-22 1E-26 122.2 9.6 86 21-107 4-89 (168)
75 2gf0_A GTP-binding protein DI- 99.9 2.8E-22 9.5E-27 125.9 9.6 88 18-106 5-92 (199)
76 3q85_A GTP-binding protein REM 99.9 1.8E-22 6.2E-27 123.8 8.4 87 21-107 2-89 (169)
77 3con_A GTPase NRAS; structural 99.9 6.2E-22 2.1E-26 123.8 10.6 88 18-106 18-105 (190)
78 2nzj_A GTP-binding protein REM 99.9 3.3E-22 1.1E-26 123.2 9.1 87 20-107 3-91 (175)
79 3bwd_D RAC-like GTP-binding pr 99.9 3.5E-23 1.2E-27 128.3 4.5 88 19-107 6-93 (182)
80 3t1o_A Gliding protein MGLA; G 99.9 8.9E-23 3E-27 127.8 6.4 90 15-105 8-109 (198)
81 2erx_A GTP-binding protein DI- 99.9 7.1E-22 2.4E-26 121.1 9.7 86 21-107 3-88 (172)
82 2atv_A RERG, RAS-like estrogen 99.9 6.1E-22 2.1E-26 124.7 9.4 87 19-107 26-112 (196)
83 1zj6_A ADP-ribosylation factor 99.9 8.2E-22 2.8E-26 123.1 9.5 85 19-108 14-98 (187)
84 2zej_A Dardarin, leucine-rich 99.9 2.7E-22 9.4E-27 125.3 7.3 86 21-106 2-92 (184)
85 1upt_A ARL1, ADP-ribosylation 99.9 2.3E-21 7.7E-26 119.0 10.9 84 20-108 6-89 (171)
86 1m2o_B GTP-binding protein SAR 99.9 2.2E-21 7.7E-26 121.9 10.7 85 19-108 21-105 (190)
87 4djt_A GTP-binding nuclear pro 99.9 2.9E-22 9.9E-27 127.8 6.6 93 15-107 5-98 (218)
88 1ksh_A ARF-like protein 2; sma 99.9 2.1E-21 7.2E-26 121.0 10.4 85 19-108 16-100 (186)
89 1fzq_A ADP-ribosylation factor 99.9 6.9E-22 2.4E-26 123.3 7.9 84 19-107 14-97 (181)
90 1f6b_A SAR1; gtpases, N-termin 99.9 9.6E-22 3.3E-26 124.3 8.4 83 20-107 24-106 (198)
91 1r8s_A ADP-ribosylation factor 99.9 1E-21 3.4E-26 120.0 8.0 82 22-108 1-82 (164)
92 2ce2_X GTPase HRAS; signaling 99.9 2.2E-21 7.7E-26 118.0 9.5 85 21-106 3-87 (166)
93 3q72_A GTP-binding protein RAD 99.9 1.2E-21 3.9E-26 119.9 8.0 85 21-107 2-86 (166)
94 2cjw_A GTP-binding protein GEM 99.9 1.7E-21 5.7E-26 122.8 8.8 87 20-107 5-94 (192)
95 2b6h_A ADP-ribosylation factor 99.9 2.5E-21 8.5E-26 121.8 8.7 84 19-107 27-110 (192)
96 2fh5_B SR-beta, signal recogni 99.8 3.4E-21 1.2E-25 122.6 8.0 86 18-106 4-91 (214)
97 1moz_A ARL1, ADP-ribosylation 99.8 2.7E-21 9.3E-26 120.0 7.1 85 19-108 16-100 (183)
98 3llu_A RAS-related GTP-binding 99.8 2.5E-21 8.5E-26 122.0 6.7 91 13-106 12-108 (196)
99 2wkq_A NPH1-1, RAS-related C3 99.8 1.7E-20 5.8E-25 125.9 10.6 87 20-107 154-240 (332)
100 2x77_A ADP-ribosylation factor 99.8 4.3E-21 1.5E-25 120.0 7.1 85 19-108 20-104 (189)
101 2lkc_A Translation initiation 99.8 6.9E-21 2.4E-25 117.6 7.9 85 19-105 6-90 (178)
102 3th5_A RAS-related C3 botulinu 99.7 1.4E-22 4.6E-27 128.3 0.0 89 19-108 28-116 (204)
103 3r7w_B Gtpase2, GTP-binding pr 99.8 3.3E-21 1.1E-25 130.3 5.2 79 23-106 1-85 (331)
104 3r7w_A Gtpase1, GTP-binding pr 99.8 5.1E-20 1.8E-24 123.7 9.9 85 20-107 2-94 (307)
105 3o47_A ADP-ribosylation factor 99.8 5E-20 1.7E-24 124.8 9.3 85 19-108 163-247 (329)
106 3c5h_A Glucocorticoid receptor 99.8 3.7E-21 1.3E-25 126.2 1.5 94 13-106 11-175 (255)
107 3lvq_E ARF-GAP with SH3 domain 99.8 2.2E-19 7.6E-24 126.9 10.1 84 19-107 320-403 (497)
108 2wji_A Ferrous iron transport 99.8 6E-19 2.1E-23 108.4 9.5 84 21-106 3-94 (165)
109 1svi_A GTP-binding protein YSX 99.8 4.7E-19 1.6E-23 110.9 7.6 86 18-106 20-118 (195)
110 2wjg_A FEOB, ferrous iron tran 99.8 3.4E-18 1.2E-22 106.4 9.9 85 20-106 6-98 (188)
111 1nrj_B SR-beta, signal recogni 99.8 2E-19 6.9E-24 114.6 4.4 81 18-107 9-97 (218)
112 2dyk_A GTP-binding protein; GT 99.8 3.4E-18 1.1E-22 103.8 9.6 83 22-106 2-92 (161)
113 2qu8_A Putative nucleolar GTP- 99.8 3.8E-18 1.3E-22 109.7 10.0 86 19-107 27-122 (228)
114 2gj8_A MNME, tRNA modification 99.8 8.4E-18 2.9E-22 104.1 10.3 86 21-108 4-98 (172)
115 3lxx_A GTPase IMAP family memb 99.8 1E-17 3.5E-22 108.5 10.4 90 15-106 23-125 (239)
116 3dpu_A RAB family protein; roc 99.7 6.4E-19 2.2E-23 125.7 4.3 90 17-106 37-134 (535)
117 2ged_A SR-beta, signal recogni 99.7 3.7E-19 1.3E-23 111.4 1.8 77 19-104 46-129 (193)
118 2cxx_A Probable GTP-binding pr 99.7 2.1E-18 7.3E-23 107.3 4.0 80 22-107 2-93 (190)
119 3a1s_A Iron(II) transport prot 99.7 5E-17 1.7E-21 106.8 10.6 86 19-106 3-96 (258)
120 3k53_A Ferrous iron transport 99.7 5.1E-17 1.7E-21 107.2 9.7 84 21-106 3-94 (271)
121 3iby_A Ferrous iron transport 99.7 4.7E-17 1.6E-21 106.9 9.5 83 22-106 2-96 (256)
122 2xtp_A GTPase IMAP family memb 99.7 1.1E-16 3.8E-21 104.7 10.8 87 17-105 18-117 (260)
123 3lxw_A GTPase IMAP family memb 99.7 2.9E-17 1E-21 107.3 7.3 87 17-105 17-117 (247)
124 3b1v_A Ferrous iron uptake tra 99.7 2.8E-17 9.5E-22 108.9 6.6 83 21-106 3-93 (272)
125 3pqc_A Probable GTP-binding pr 99.7 1.2E-16 3.9E-21 99.7 9.0 85 18-106 20-117 (195)
126 3i8s_A Ferrous iron transport 99.7 1.9E-16 6.4E-21 104.9 8.8 84 21-106 3-98 (274)
127 1wf3_A GTP-binding protein; GT 99.7 1.3E-16 4.5E-21 107.0 8.1 86 19-106 5-99 (301)
128 4dhe_A Probable GTP-binding pr 99.7 3.7E-17 1.3E-21 104.3 4.5 87 19-105 27-127 (223)
129 3def_A T7I23.11 protein; chlor 99.7 6.5E-16 2.2E-20 101.5 10.1 83 20-105 35-128 (262)
130 1mky_A Probable GTP-binding pr 99.7 3E-16 1E-20 109.7 8.7 82 22-105 2-93 (439)
131 3iev_A GTP-binding protein ERA 99.6 4.7E-16 1.6E-20 104.4 7.7 90 16-106 5-105 (308)
132 2hjg_A GTP-binding protein ENG 99.6 2.4E-16 8.3E-21 110.1 6.0 86 19-106 173-270 (436)
133 3ohm_A Guanine nucleotide-bind 99.6 3.8E-15 1.3E-19 100.8 11.3 52 52-107 153-204 (327)
134 4dcu_A GTP-binding protein ENG 99.6 1.8E-16 6.1E-21 111.3 3.9 86 19-105 21-114 (456)
135 3gee_A MNME, tRNA modification 99.6 1.2E-15 4.1E-20 107.8 7.6 86 20-107 232-326 (476)
136 1h65_A Chloroplast outer envel 99.6 1.1E-15 3.9E-20 100.7 6.9 83 20-105 38-131 (270)
137 3j2k_7 ERF3, eukaryotic polype 99.6 6.2E-15 2.1E-19 103.2 10.9 87 17-105 13-130 (439)
138 2hjg_A GTP-binding protein ENG 99.6 2.3E-16 8E-21 110.2 3.7 84 22-106 4-95 (436)
139 3t5d_A Septin-7; GTP-binding p 99.6 2.4E-15 8.1E-20 99.4 7.2 88 18-105 5-127 (274)
140 4fid_A G protein alpha subunit 99.6 7.8E-15 2.7E-19 99.7 9.1 51 52-106 147-197 (340)
141 1wb1_A Translation elongation 99.6 8.5E-15 2.9E-19 103.6 9.1 89 15-105 13-108 (482)
142 4dcu_A GTP-binding protein ENG 99.6 2.6E-15 9.1E-20 105.4 6.5 85 19-105 193-289 (456)
143 3qq5_A Small GTP-binding prote 99.6 1.4E-15 4.7E-20 106.1 4.7 87 17-104 30-124 (423)
144 3p26_A Elongation factor 1 alp 99.6 4.3E-15 1.5E-19 105.0 7.2 88 19-106 31-147 (483)
145 1cip_A Protein (guanine nucleo 99.6 1.7E-14 5.9E-19 98.6 9.5 52 52-107 179-230 (353)
146 2qag_A Septin-2, protein NEDD5 99.6 3.7E-15 1.3E-19 102.1 5.4 87 19-105 35-155 (361)
147 1xzp_A Probable tRNA modificat 99.6 2.7E-15 9.4E-20 106.1 4.7 85 21-107 243-337 (482)
148 2xtz_A Guanine nucleotide-bind 99.5 2.3E-14 7.7E-19 98.0 8.2 39 68-106 181-219 (354)
149 3geh_A MNME, tRNA modification 99.5 5E-15 1.7E-19 104.3 4.9 85 20-106 223-316 (462)
150 3izy_P Translation initiation 99.5 1.5E-16 5E-21 113.7 -3.2 84 21-105 4-87 (537)
151 1kk1_A EIF2gamma; initiation o 99.5 1.6E-13 5.6E-18 95.1 11.5 89 17-105 6-118 (410)
152 1jal_A YCHF protein; nucleotid 99.5 1.5E-14 5.1E-19 99.1 6.0 83 22-106 3-109 (363)
153 1pui_A ENGB, probable GTP-bind 99.5 1.6E-14 5.4E-19 91.3 5.8 85 19-106 24-121 (210)
154 1zun_B Sulfate adenylate trans 99.5 4.2E-14 1.4E-18 98.8 8.2 88 18-105 21-139 (434)
155 2ohf_A Protein OLA1, GTP-bindi 99.5 1.4E-14 4.9E-19 100.1 5.7 89 19-107 20-130 (396)
156 1jny_A EF-1-alpha, elongation 99.5 1.4E-14 4.9E-19 101.2 5.8 84 20-105 5-119 (435)
157 2c78_A Elongation factor TU-A; 99.5 1.2E-14 4.2E-19 100.7 5.1 88 19-106 9-111 (405)
158 1s0u_A EIF-2-gamma, translatio 99.5 1.2E-13 4E-18 95.8 10.0 86 20-105 7-116 (408)
159 1d2e_A Elongation factor TU (E 99.5 2.9E-14 9.8E-19 98.7 6.3 85 21-105 3-101 (397)
160 3sjy_A Translation initiation 99.5 2.9E-13 9.9E-18 93.8 11.0 89 18-106 5-111 (403)
161 1mky_A Probable GTP-binding pr 99.5 1.3E-13 4.6E-18 96.3 9.0 86 19-106 178-276 (439)
162 1f60_A Elongation factor EEF1A 99.5 3.3E-14 1.1E-18 100.0 5.7 83 19-105 5-120 (458)
163 2h5e_A Peptide chain release f 99.5 3.2E-14 1.1E-18 101.6 5.8 87 19-105 11-117 (529)
164 3cb4_D GTP-binding protein LEP 99.5 4.6E-14 1.6E-18 102.0 6.3 87 20-106 3-107 (599)
165 1zo1_I IF2, translation initia 99.5 3E-15 1E-19 106.2 0.0 84 20-105 3-86 (501)
166 3izq_1 HBS1P, elongation facto 99.5 7.7E-14 2.6E-18 101.1 7.1 85 19-105 165-280 (611)
167 2qtf_A Protein HFLX, GTP-bindi 99.5 2E-13 6.7E-18 93.7 8.7 82 22-106 179-270 (364)
168 1n0u_A EF-2, elongation factor 99.5 8E-14 2.7E-18 104.0 7.1 89 18-106 16-134 (842)
169 1ega_A Protein (GTP-binding pr 99.5 6.6E-14 2.3E-18 93.8 6.0 84 20-105 7-100 (301)
170 3tr5_A RF-3, peptide chain rel 99.5 1.8E-14 6.1E-19 102.9 3.2 85 19-105 11-117 (528)
171 1wxq_A GTP-binding protein; st 99.5 2.2E-13 7.6E-18 94.3 7.9 85 22-106 1-114 (397)
172 2elf_A Protein translation elo 99.4 1.2E-13 4.1E-18 94.9 6.0 70 23-102 23-92 (370)
173 2ywe_A GTP-binding protein LEP 99.4 3.5E-13 1.2E-17 97.4 8.4 88 19-106 4-109 (600)
174 2aka_B Dynamin-1; fusion prote 99.4 2.2E-13 7.4E-18 90.4 6.7 29 19-47 24-52 (299)
175 1r5b_A Eukaryotic peptide chai 99.4 2.2E-13 7.6E-18 96.0 7.0 83 19-105 41-156 (467)
176 1jwy_B Dynamin A GTPase domain 99.4 3.4E-13 1.2E-17 90.1 6.8 28 19-46 22-49 (315)
177 1g7s_A Translation initiation 99.4 6.8E-14 2.3E-18 101.1 3.5 85 21-105 5-105 (594)
178 1lnz_A SPO0B-associated GTP-bi 99.4 1.2E-13 4.1E-18 94.1 4.2 80 23-105 160-248 (342)
179 3avx_A Elongation factor TS, e 99.4 1.8E-13 6.3E-18 104.3 5.5 87 19-105 294-394 (1289)
180 1dar_A EF-G, elongation factor 99.4 6.3E-13 2.1E-17 97.5 8.2 85 18-106 9-113 (691)
181 2e87_A Hypothetical protein PH 99.4 1.2E-12 4.2E-17 89.3 9.2 86 19-106 165-259 (357)
182 3mca_A HBS1, elongation factor 99.4 4.1E-14 1.4E-18 102.2 1.6 86 18-105 174-290 (592)
183 2rdo_7 EF-G, elongation factor 99.4 1.3E-12 4.5E-17 96.0 8.9 86 18-105 7-117 (704)
184 2dy1_A Elongation factor G; tr 99.4 5.6E-13 1.9E-17 97.4 6.4 87 19-105 7-109 (665)
185 3t34_A Dynamin-related protein 99.4 1.3E-12 4.4E-17 89.2 6.8 86 21-106 34-185 (360)
186 2xex_A Elongation factor G; GT 99.4 2.3E-12 8E-17 94.5 8.4 84 19-106 8-111 (693)
187 2qpt_A EH domain-containing pr 99.3 2E-12 6.7E-17 92.8 7.0 86 18-106 62-201 (550)
188 2dby_A GTP-binding protein; GD 99.3 1.3E-12 4.5E-17 89.7 5.5 78 22-105 2-111 (368)
189 2qnr_A Septin-2, protein NEDD5 99.3 9E-13 3.1E-17 88.3 3.3 72 17-88 14-101 (301)
190 2j69_A Bacterial dynamin-like 99.3 7.1E-12 2.4E-16 92.0 7.0 87 20-106 68-213 (695)
191 2x2e_A Dynamin-1; nitration, h 99.2 6.2E-12 2.1E-16 85.7 4.9 28 20-47 30-57 (353)
192 2qag_C Septin-7; cell cycle, c 99.2 2.3E-11 7.9E-16 84.8 6.5 67 17-83 27-101 (418)
193 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4.7E-11 1.6E-15 82.6 7.3 88 18-105 17-127 (392)
194 1azs_C GS-alpha; complex (lyas 99.1 2.4E-10 8.1E-15 79.3 8.6 50 53-106 204-253 (402)
195 4a9a_A Ribosome-interacting GT 99.1 1.8E-10 6.3E-15 79.3 7.6 84 20-105 71-161 (376)
196 1zcb_A G alpha I/13; GTP-bindi 99.0 6E-10 2.1E-14 76.4 7.1 52 52-107 187-238 (362)
197 1udx_A The GTP-binding protein 99.0 9.3E-10 3.2E-14 76.7 6.1 80 23-104 159-246 (416)
198 2hf9_A Probable hydrogenase ni 98.9 1.5E-10 5E-15 73.8 0.4 40 20-59 37-76 (226)
199 3cnl_A YLQF, putative uncharac 98.9 8.4E-10 2.9E-14 72.6 3.3 57 22-82 100-156 (262)
200 1u0l_A Probable GTPase ENGC; p 98.9 8.2E-11 2.8E-15 78.7 -1.8 66 36-107 32-98 (301)
201 3vqt_A RF-3, peptide chain rel 98.9 2.6E-09 8.9E-14 76.7 5.1 84 19-104 29-134 (548)
202 1puj_A YLQF, conserved hypothe 98.8 5.5E-09 1.9E-13 69.4 5.0 59 19-81 118-176 (282)
203 2wsm_A Hydrogenase expression/ 98.8 4.3E-09 1.5E-13 66.7 4.1 24 21-44 30-53 (221)
204 3p32_A Probable GTPase RV1496/ 98.6 6E-08 2E-12 66.1 5.1 24 20-43 78-101 (355)
205 4fn5_A EF-G 1, elongation fact 98.6 2.1E-07 7.2E-12 68.6 8.1 86 19-104 11-119 (709)
206 3j25_A Tetracycline resistance 98.5 4.6E-09 1.6E-13 76.6 -1.5 83 22-104 3-101 (638)
207 1bif_A 6-phosphofructo-2-kinas 98.5 2.1E-09 7.2E-14 75.8 -4.6 87 19-106 37-133 (469)
208 2www_A Methylmalonic aciduria 98.5 2.3E-07 7.8E-12 63.2 5.5 23 21-43 74-96 (349)
209 3zvr_A Dynamin-1; hydrolase, D 98.4 1.5E-06 5.2E-11 64.6 9.4 28 19-46 49-76 (772)
210 2p67_A LAO/AO transport system 98.4 7.2E-08 2.4E-12 65.5 1.6 33 70-105 149-181 (341)
211 3ec1_A YQEH GTPase; atnos1, at 98.3 6.7E-07 2.3E-11 61.4 5.2 77 22-103 163-255 (369)
212 3h2y_A GTPase family protein; 98.3 4.6E-07 1.6E-11 62.2 3.9 57 22-81 161-222 (368)
213 1f5n_A Interferon-induced guan 98.3 1.4E-06 5E-11 63.1 5.7 62 19-82 36-103 (592)
214 3sop_A Neuronal-specific septi 98.2 9.4E-07 3.2E-11 58.3 3.2 24 21-44 2-25 (270)
215 1yrb_A ATP(GTP)binding protein 98.1 4E-06 1.4E-10 54.3 5.2 24 19-42 12-35 (262)
216 2qag_B Septin-6, protein NEDD5 98.0 1.9E-05 6.5E-10 55.3 6.9 27 20-46 41-67 (427)
217 2j37_W Signal recognition part 97.8 6E-06 2E-10 58.9 2.0 23 20-42 100-122 (504)
218 1ye8_A Protein THEP1, hypothet 97.8 1.5E-05 5.1E-10 49.4 3.3 22 23-44 2-23 (178)
219 2cdn_A Adenylate kinase; phosp 97.8 1.7E-05 5.7E-10 49.6 3.6 26 18-43 17-42 (201)
220 1kgd_A CASK, peripheral plasma 97.8 1.5E-05 5.2E-10 49.1 3.1 22 23-44 7-28 (180)
221 2qt1_A Nicotinamide riboside k 97.7 3E-05 1E-09 48.6 4.1 26 19-44 19-44 (207)
222 1lvg_A Guanylate kinase, GMP k 97.7 2.3E-05 7.9E-10 49.1 3.1 21 23-43 6-26 (198)
223 3ney_A 55 kDa erythrocyte memb 97.7 3.4E-05 1.2E-09 48.7 3.4 22 23-44 21-42 (197)
224 1ex7_A Guanylate kinase; subst 97.7 3.1E-05 1.1E-09 48.5 3.1 21 24-44 4-24 (186)
225 1zp6_A Hypothetical protein AT 97.7 3.1E-05 1E-09 47.8 3.0 22 23-44 11-32 (191)
226 3q5d_A Atlastin-1; G protein, 97.6 7.8E-05 2.7E-09 52.5 5.3 62 20-81 66-151 (447)
227 3tr0_A Guanylate kinase, GMP k 97.6 3.5E-05 1.2E-09 48.0 3.1 22 23-44 9-30 (205)
228 3a00_A Guanylate kinase, GMP k 97.6 3.4E-05 1.2E-09 47.7 3.0 20 24-43 4-23 (186)
229 1s96_A Guanylate kinase, GMP k 97.6 3.7E-05 1.3E-09 49.2 3.1 22 23-44 18-39 (219)
230 3tau_A Guanylate kinase, GMP k 97.6 4.3E-05 1.5E-09 48.2 3.1 22 23-44 10-31 (208)
231 1znw_A Guanylate kinase, GMP k 97.6 4.2E-05 1.5E-09 48.1 3.0 22 23-44 22-43 (207)
232 4gp7_A Metallophosphoesterase; 97.6 3.7E-05 1.3E-09 47.1 2.6 18 23-40 11-28 (171)
233 1z6g_A Guanylate kinase; struc 97.6 4.7E-05 1.6E-09 48.4 3.0 22 23-44 25-46 (218)
234 2qor_A Guanylate kinase; phosp 97.5 5.5E-05 1.9E-09 47.4 3.1 22 23-44 14-35 (204)
235 3kb2_A SPBC2 prophage-derived 97.5 6.7E-05 2.3E-09 45.3 3.2 21 23-43 3-23 (173)
236 1kag_A SKI, shikimate kinase I 97.5 6.8E-05 2.3E-09 45.5 3.1 21 23-43 6-26 (173)
237 1ly1_A Polynucleotide kinase; 97.5 8.9E-05 3E-09 45.1 3.5 22 22-43 3-24 (181)
238 3c8u_A Fructokinase; YP_612366 97.5 6.9E-05 2.4E-09 47.1 3.0 23 21-43 22-44 (208)
239 1htw_A HI0065; nucleotide-bind 97.5 7.7E-05 2.6E-09 45.4 3.0 23 23-45 35-57 (158)
240 2bdt_A BH3686; alpha-beta prot 97.5 7.6E-05 2.6E-09 46.0 3.0 21 23-43 4-24 (189)
241 3lw7_A Adenylate kinase relate 97.5 8.6E-05 2.9E-09 44.7 3.2 20 22-41 2-21 (179)
242 3vaa_A Shikimate kinase, SK; s 97.5 9.1E-05 3.1E-09 46.2 3.3 21 23-43 27-47 (199)
243 3fb4_A Adenylate kinase; psych 97.5 8.7E-05 3E-09 46.7 3.2 22 22-43 1-22 (216)
244 3dl0_A Adenylate kinase; phosp 97.4 9.1E-05 3.1E-09 46.6 3.2 22 22-43 1-22 (216)
245 1qhx_A CPT, protein (chloramph 97.4 8.8E-05 3E-09 45.2 3.1 21 23-43 5-25 (178)
246 2j41_A Guanylate kinase; GMP, 97.4 8.2E-05 2.8E-09 46.3 3.0 23 23-45 8-30 (207)
247 1ukz_A Uridylate kinase; trans 97.4 0.00013 4.5E-09 45.4 3.9 23 21-43 15-37 (203)
248 2bbw_A Adenylate kinase 4, AK4 97.4 9.7E-05 3.3E-09 47.6 3.4 21 22-42 28-48 (246)
249 4eun_A Thermoresistant glucoki 97.4 8.8E-05 3E-09 46.3 3.1 22 22-43 30-51 (200)
250 1p5z_B DCK, deoxycytidine kina 97.4 5.7E-05 1.9E-09 49.2 2.2 26 19-44 22-47 (263)
251 1ak2_A Adenylate kinase isoenz 97.4 0.00011 3.7E-09 47.0 3.4 24 20-43 15-38 (233)
252 3t61_A Gluconokinase; PSI-biol 97.4 9.5E-05 3.3E-09 46.1 3.0 22 22-43 19-40 (202)
253 1knq_A Gluconate kinase; ALFA/ 97.4 0.00014 4.8E-09 44.3 3.6 22 22-43 9-30 (175)
254 1nks_A Adenylate kinase; therm 97.4 0.00011 3.7E-09 45.1 3.2 21 23-43 3-23 (194)
255 2i3b_A HCR-ntpase, human cance 97.4 9.3E-05 3.2E-09 46.3 2.9 21 23-43 3-23 (189)
256 3tif_A Uncharacterized ABC tra 97.4 9.4E-05 3.2E-09 47.7 2.9 22 23-44 33-54 (235)
257 2jaq_A Deoxyguanosine kinase; 97.4 0.00012 4E-09 45.4 3.3 21 23-43 2-22 (205)
258 3ec2_A DNA replication protein 97.4 8E-05 2.7E-09 45.6 2.4 23 22-44 39-61 (180)
259 2rcn_A Probable GTPase ENGC; Y 97.4 0.00011 3.8E-09 50.3 3.2 24 23-46 217-240 (358)
260 3trf_A Shikimate kinase, SK; a 97.4 0.00014 4.7E-09 44.6 3.3 22 22-43 6-27 (185)
261 3sr0_A Adenylate kinase; phosp 97.4 0.00013 4.6E-09 46.2 3.2 21 23-43 2-22 (206)
262 2ehv_A Hypothetical protein PH 97.4 0.00012 4.3E-09 46.7 3.2 20 23-42 32-51 (251)
263 2if2_A Dephospho-COA kinase; a 97.4 0.00013 4.4E-09 45.5 3.2 22 22-43 2-23 (204)
264 2pcj_A ABC transporter, lipopr 97.4 0.00011 3.7E-09 47.1 2.8 22 23-44 32-53 (224)
265 1jbk_A CLPB protein; beta barr 97.4 0.00013 4.4E-09 44.3 3.1 23 22-44 44-66 (195)
266 2onk_A Molybdate/tungstate ABC 97.4 0.00013 4.5E-09 47.2 3.2 22 23-44 26-47 (240)
267 1kht_A Adenylate kinase; phosp 97.3 0.00015 5E-09 44.5 3.3 22 22-43 4-25 (192)
268 3uie_A Adenylyl-sulfate kinase 97.3 0.00013 4.4E-09 45.6 3.0 22 22-43 26-47 (200)
269 2rhm_A Putative kinase; P-loop 97.3 0.00017 5.7E-09 44.4 3.4 22 22-43 6-27 (193)
270 1zd8_A GTP:AMP phosphotransfer 97.3 0.00014 4.8E-09 46.2 3.1 22 22-43 8-29 (227)
271 1b0u_A Histidine permease; ABC 97.3 0.00013 4.5E-09 47.8 3.0 22 23-44 34-55 (262)
272 3umf_A Adenylate kinase; rossm 97.3 0.00017 5.7E-09 46.2 3.4 20 24-43 32-51 (217)
273 3asz_A Uridine kinase; cytidin 97.3 0.00015 5.1E-09 45.4 3.1 22 22-43 7-28 (211)
274 4a74_A DNA repair and recombin 97.3 0.00014 4.7E-09 45.9 2.9 21 23-43 27-47 (231)
275 1e4v_A Adenylate kinase; trans 97.3 0.00015 5.2E-09 45.6 3.1 21 23-43 2-22 (214)
276 1np6_A Molybdopterin-guanine d 97.3 0.00016 5.5E-09 44.7 3.1 22 23-44 8-29 (174)
277 1cke_A CK, MSSA, protein (cyti 97.3 0.00017 5.9E-09 45.5 3.3 22 22-43 6-27 (227)
278 3cm0_A Adenylate kinase; ATP-b 97.3 0.0002 6.7E-09 43.9 3.5 22 22-43 5-26 (186)
279 2cbz_A Multidrug resistance-as 97.3 0.00016 5.5E-09 46.7 3.1 22 23-44 33-54 (237)
280 1y63_A LMAJ004144AAA protein; 97.3 0.0002 6.7E-09 44.2 3.4 23 22-44 11-33 (184)
281 2eyu_A Twitching motility prot 97.3 0.00016 5.4E-09 47.4 3.1 21 23-43 27-47 (261)
282 1sgw_A Putative ABC transporte 97.3 0.00016 5.3E-09 46.1 3.0 22 23-44 37-58 (214)
283 3gfo_A Cobalt import ATP-bindi 97.3 0.00015 5.1E-09 47.9 3.0 22 23-44 36-57 (275)
284 1mv5_A LMRA, multidrug resista 97.3 0.00017 5.9E-09 46.6 3.2 22 23-44 30-51 (243)
285 3tlx_A Adenylate kinase 2; str 97.3 0.00021 7.2E-09 46.1 3.6 24 20-43 28-51 (243)
286 2ff7_A Alpha-hemolysin translo 97.3 0.00017 5.8E-09 46.9 3.1 22 23-44 37-58 (247)
287 1g6h_A High-affinity branched- 97.3 0.00015 5.1E-09 47.3 2.9 22 23-44 35-56 (257)
288 1via_A Shikimate kinase; struc 97.3 0.00016 5.5E-09 44.1 2.9 21 23-43 6-26 (175)
289 3l82_B F-box only protein 4; T 97.3 0.00013 4.4E-09 46.8 2.4 30 77-106 109-138 (227)
290 1jjv_A Dephospho-COA kinase; P 97.3 0.00023 7.7E-09 44.5 3.5 22 22-43 3-24 (206)
291 2olj_A Amino acid ABC transpor 97.3 0.00016 5.6E-09 47.4 3.0 22 23-44 52-73 (263)
292 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00018 6.2E-09 46.8 3.1 22 23-44 31-52 (250)
293 2zu0_C Probable ATP-dependent 97.3 0.00019 6.4E-09 47.2 3.2 22 23-44 48-69 (267)
294 4g1u_C Hemin import ATP-bindin 97.3 0.00016 5.6E-09 47.5 2.9 22 23-44 39-60 (266)
295 1ji0_A ABC transporter; ATP bi 97.3 0.00017 5.7E-09 46.7 2.9 22 23-44 34-55 (240)
296 2yv5_A YJEQ protein; hydrolase 97.3 0.00018 6.1E-09 48.0 3.1 20 23-42 167-186 (302)
297 2plr_A DTMP kinase, probable t 97.3 0.00023 8E-09 44.3 3.5 22 22-43 5-26 (213)
298 2pze_A Cystic fibrosis transme 97.3 0.0002 6.8E-09 46.0 3.2 22 23-44 36-57 (229)
299 2qm8_A GTPase/ATPase; G protei 97.3 0.00019 6.6E-09 48.6 3.3 21 22-42 56-76 (337)
300 2qi9_C Vitamin B12 import ATP- 97.3 0.00018 6E-09 46.9 3.0 22 23-44 28-49 (249)
301 1tq4_A IIGP1, interferon-induc 97.3 0.00017 5.9E-09 50.2 3.1 23 22-44 70-92 (413)
302 1tev_A UMP-CMP kinase; ploop, 97.3 0.00024 8.3E-09 43.6 3.5 22 22-43 4-25 (196)
303 3lnc_A Guanylate kinase, GMP k 97.3 0.0001 3.6E-09 46.9 1.8 20 23-42 29-48 (231)
304 1aky_A Adenylate kinase; ATP:A 97.3 0.00022 7.4E-09 45.1 3.3 22 22-43 5-26 (220)
305 1u0l_A Probable GTPase ENGC; p 97.2 0.00021 7.1E-09 47.6 3.3 23 23-45 171-193 (301)
306 2v9p_A Replication protein E1; 97.2 0.0002 7E-09 48.0 3.2 20 23-42 128-147 (305)
307 1zcb_A G alpha I/13; GTP-bindi 97.2 0.00022 7.6E-09 48.8 3.5 24 19-42 31-54 (362)
308 3b85_A Phosphate starvation-in 97.2 0.00015 5.1E-09 46.0 2.4 22 23-44 24-45 (208)
309 3iij_A Coilin-interacting nucl 97.2 0.00024 8.1E-09 43.5 3.3 22 22-43 12-33 (180)
310 2ghi_A Transport protein; mult 97.2 0.00021 7.1E-09 46.8 3.1 22 23-44 48-69 (260)
311 1vpl_A ABC transporter, ATP-bi 97.2 0.00019 6.5E-09 46.9 3.0 22 23-44 43-64 (256)
312 2ixe_A Antigen peptide transpo 97.2 0.00018 6.3E-09 47.3 2.9 22 23-44 47-68 (271)
313 2ihy_A ABC transporter, ATP-bi 97.2 0.00022 7.4E-09 47.2 3.2 22 23-44 49-70 (279)
314 2pt5_A Shikimate kinase, SK; a 97.2 0.00025 8.5E-09 42.7 3.3 21 23-43 2-22 (168)
315 1uf9_A TT1252 protein; P-loop, 97.2 0.00027 9.3E-09 43.7 3.4 24 21-44 8-31 (203)
316 2wwf_A Thymidilate kinase, put 97.2 0.00033 1.1E-08 43.7 3.8 22 22-43 11-32 (212)
317 1lw7_A Transcriptional regulat 97.2 0.00018 6E-09 49.1 2.7 23 21-43 170-192 (365)
318 1gvn_B Zeta; postsegregational 97.2 0.00029 9.8E-09 46.7 3.6 23 21-43 33-55 (287)
319 1ixz_A ATP-dependent metallopr 97.2 0.00023 8E-09 45.8 3.1 21 24-44 52-72 (254)
320 2nq2_C Hypothetical ABC transp 97.2 0.00022 7.4E-09 46.5 2.9 22 23-44 33-54 (253)
321 2p65_A Hypothetical protein PF 97.2 0.00018 6.2E-09 43.6 2.4 23 22-44 44-66 (187)
322 2yz2_A Putative ABC transporte 97.2 0.00022 7.6E-09 46.8 2.9 22 23-44 35-56 (266)
323 2xb4_A Adenylate kinase; ATP-b 97.2 0.00027 9.3E-09 44.9 3.3 21 23-43 2-22 (223)
324 2yvu_A Probable adenylyl-sulfa 97.2 0.00042 1.4E-08 42.6 4.0 23 21-43 13-35 (186)
325 1zak_A Adenylate kinase; ATP:A 97.2 0.00022 7.5E-09 45.1 2.7 22 22-43 6-27 (222)
326 3aez_A Pantothenate kinase; tr 97.2 0.00025 8.6E-09 47.6 3.1 25 19-43 88-112 (312)
327 2pjz_A Hypothetical protein ST 97.2 0.00028 9.5E-09 46.3 3.2 23 23-45 32-54 (263)
328 1t9h_A YLOQ, probable GTPase E 97.2 6.4E-05 2.2E-09 50.5 0.1 23 23-45 175-197 (307)
329 2v54_A DTMP kinase, thymidylat 97.2 0.00031 1.1E-08 43.6 3.3 23 22-44 5-27 (204)
330 2x8a_A Nuclear valosin-contain 97.2 0.00026 8.9E-09 46.6 3.0 21 24-44 47-67 (274)
331 2kjq_A DNAA-related protein; s 97.2 0.00019 6.6E-09 43.1 2.2 22 23-44 38-59 (149)
332 1rj9_A FTSY, signal recognitio 97.1 0.00027 9.1E-09 47.3 3.0 21 22-42 103-123 (304)
333 3bos_A Putative DNA replicatio 97.1 0.00032 1.1E-08 44.3 3.3 22 22-43 53-74 (242)
334 2ze6_A Isopentenyl transferase 97.1 0.00029 1E-08 45.7 3.1 21 23-43 3-23 (253)
335 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00031 1E-08 44.2 3.1 21 23-43 25-45 (235)
336 2f1r_A Molybdopterin-guanine d 97.1 0.00012 4.3E-09 45.0 1.2 21 23-43 4-24 (171)
337 3be4_A Adenylate kinase; malar 97.1 0.00033 1.1E-08 44.3 3.2 22 22-43 6-27 (217)
338 2c95_A Adenylate kinase 1; tra 97.1 0.00035 1.2E-08 43.0 3.2 22 22-43 10-31 (196)
339 3b9q_A Chloroplast SRP recepto 97.1 0.00031 1.1E-08 47.0 3.1 22 22-43 101-122 (302)
340 3fvq_A Fe(3+) IONS import ATP- 97.1 0.0003 1E-08 48.2 3.0 23 23-45 32-54 (359)
341 2bwj_A Adenylate kinase 5; pho 97.1 0.00037 1.3E-08 43.0 3.2 22 22-43 13-34 (199)
342 2p5t_B PEZT; postsegregational 97.1 0.00033 1.1E-08 45.4 3.0 23 21-43 32-54 (253)
343 2pbr_A DTMP kinase, thymidylat 97.1 0.00039 1.3E-08 42.7 3.2 21 23-43 2-22 (195)
344 2z0h_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 43.0 3.0 22 23-44 2-23 (197)
345 1qf9_A UMP/CMP kinase, protein 97.1 0.00048 1.7E-08 42.1 3.6 22 22-43 7-28 (194)
346 1odf_A YGR205W, hypothetical 3 97.1 0.0005 1.7E-08 45.7 3.9 23 20-42 30-52 (290)
347 1e6c_A Shikimate kinase; phosp 97.1 0.00038 1.3E-08 42.1 3.1 21 23-43 4-24 (173)
348 1z47_A CYSA, putative ABC-tran 97.1 0.00034 1.2E-08 47.8 3.1 23 23-45 43-65 (355)
349 3e70_C DPA, signal recognition 97.1 0.00034 1.2E-08 47.3 3.1 23 21-43 129-151 (328)
350 1iy2_A ATP-dependent metallopr 97.1 0.00035 1.2E-08 45.7 3.1 21 24-44 76-96 (278)
351 2jeo_A Uridine-cytidine kinase 97.1 0.00035 1.2E-08 45.0 3.0 22 22-43 26-47 (245)
352 1njg_A DNA polymerase III subu 97.1 0.00036 1.2E-08 43.7 3.0 21 23-43 47-67 (250)
353 1in4_A RUVB, holliday junction 97.1 0.00034 1.2E-08 47.1 3.0 22 23-44 53-74 (334)
354 2bbs_A Cystic fibrosis transme 97.1 0.00035 1.2E-08 46.5 3.0 22 23-44 66-87 (290)
355 1nn5_A Similar to deoxythymidy 97.1 0.0004 1.4E-08 43.3 3.2 22 22-43 10-31 (215)
356 2yyz_A Sugar ABC transporter, 97.1 0.00036 1.2E-08 47.8 3.1 22 23-44 31-52 (359)
357 2it1_A 362AA long hypothetical 97.1 0.00037 1.3E-08 47.8 3.2 22 23-44 31-52 (362)
358 3rlf_A Maltose/maltodextrin im 97.1 0.00039 1.3E-08 48.0 3.2 23 23-45 31-53 (381)
359 2chg_A Replication factor C sm 97.1 0.0004 1.4E-08 43.0 3.0 21 23-43 40-60 (226)
360 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00039 1.3E-08 45.2 3.1 22 22-43 5-26 (260)
361 2vli_A Antibiotic resistance p 97.1 0.00028 9.4E-09 43.1 2.2 22 22-43 6-27 (183)
362 1xjc_A MOBB protein homolog; s 97.1 0.00043 1.5E-08 42.6 3.1 22 22-43 5-26 (169)
363 3jvv_A Twitching mobility prot 97.0 0.00037 1.2E-08 47.7 3.0 21 23-43 125-145 (356)
364 2w58_A DNAI, primosome compone 97.0 0.00041 1.4E-08 43.1 3.0 22 22-43 55-76 (202)
365 1gtv_A TMK, thymidylate kinase 97.0 0.00012 4.2E-09 45.8 0.6 21 23-43 2-22 (214)
366 1v43_A Sugar-binding transport 97.0 0.0004 1.4E-08 47.8 3.2 22 23-44 39-60 (372)
367 1g29_1 MALK, maltose transport 97.0 0.00039 1.3E-08 47.8 3.1 23 23-45 31-53 (372)
368 1lv7_A FTSH; alpha/beta domain 97.0 0.0004 1.4E-08 44.8 3.1 21 23-43 47-67 (257)
369 2iyv_A Shikimate kinase, SK; t 97.0 0.00043 1.5E-08 42.4 3.0 21 23-43 4-24 (184)
370 2f6r_A COA synthase, bifunctio 97.0 0.0009 3.1E-08 44.1 4.6 24 19-42 73-96 (281)
371 2cvh_A DNA repair and recombin 97.0 0.00048 1.6E-08 43.1 3.1 21 23-43 22-42 (220)
372 4e22_A Cytidylate kinase; P-lo 97.0 0.00054 1.8E-08 44.4 3.4 21 22-42 28-48 (252)
373 1n0w_A DNA repair protein RAD5 97.0 0.0005 1.7E-08 43.6 3.2 22 23-44 26-47 (243)
374 1rz3_A Hypothetical protein rb 97.0 0.0006 2.1E-08 42.6 3.5 23 21-43 22-44 (201)
375 2ewv_A Twitching motility prot 97.0 0.00048 1.6E-08 47.3 3.2 21 23-43 138-158 (372)
376 1cr0_A DNA primase/helicase; R 97.0 0.00043 1.5E-08 45.6 2.9 22 23-44 37-58 (296)
377 3nh6_A ATP-binding cassette SU 97.0 0.00026 9E-09 47.5 1.9 22 23-44 82-103 (306)
378 2gza_A Type IV secretion syste 97.0 0.00043 1.5E-08 47.3 2.9 22 23-44 177-198 (361)
379 1zuh_A Shikimate kinase; alpha 97.0 0.0006 2.1E-08 41.1 3.3 21 23-43 9-29 (168)
380 3tqc_A Pantothenate kinase; bi 97.0 0.00082 2.8E-08 45.4 4.2 24 19-42 90-113 (321)
381 3tui_C Methionine import ATP-b 97.0 0.0005 1.7E-08 47.3 3.2 21 24-44 57-77 (366)
382 2pez_A Bifunctional 3'-phospho 97.0 0.00053 1.8E-08 41.8 3.1 22 22-43 6-27 (179)
383 1sq5_A Pantothenate kinase; P- 97.0 0.0007 2.4E-08 45.2 3.7 23 21-43 80-102 (308)
384 2og2_A Putative signal recogni 97.0 0.00051 1.8E-08 47.0 3.1 22 22-43 158-179 (359)
385 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00048 1.6E-08 46.6 2.9 22 23-44 173-194 (330)
386 1vht_A Dephospho-COA kinase; s 96.9 0.0007 2.4E-08 42.6 3.4 22 22-43 5-26 (218)
387 3kta_A Chromosome segregation 96.9 0.00059 2E-08 41.7 3.0 20 23-42 28-47 (182)
388 3h4m_A Proteasome-activating n 96.9 0.00056 1.9E-08 44.6 3.0 22 23-44 53-74 (285)
389 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0006 2E-08 43.8 3.1 22 22-43 40-61 (262)
390 3d31_A Sulfate/molybdate ABC t 96.9 0.00033 1.1E-08 47.8 1.9 22 23-44 28-49 (348)
391 3gd7_A Fusion complex of cysti 96.9 0.00055 1.9E-08 47.4 3.0 22 23-44 49-70 (390)
392 2vp4_A Deoxynucleoside kinase; 96.9 0.00077 2.6E-08 43.0 3.4 24 21-44 20-43 (230)
393 1m7g_A Adenylylsulfate kinase; 96.9 0.00064 2.2E-08 42.7 3.0 22 22-43 26-47 (211)
394 3syl_A Protein CBBX; photosynt 96.9 0.00084 2.9E-08 44.2 3.7 23 21-43 67-89 (309)
395 3nwj_A ATSK2; P loop, shikimat 96.9 0.00058 2E-08 44.5 2.8 21 23-43 50-70 (250)
396 2yhs_A FTSY, cell division pro 96.9 0.0006 2.1E-08 48.6 3.1 22 22-43 294-315 (503)
397 2obl_A ESCN; ATPase, hydrolase 96.9 0.00067 2.3E-08 46.2 3.2 23 23-45 73-95 (347)
398 4eaq_A DTMP kinase, thymidylat 96.9 0.00067 2.3E-08 43.5 3.1 23 21-43 26-48 (229)
399 3b9p_A CG5977-PA, isoform A; A 96.9 0.00062 2.1E-08 44.7 2.9 23 22-44 55-77 (297)
400 1p9r_A General secretion pathw 96.9 0.00061 2.1E-08 47.6 3.0 22 23-44 169-190 (418)
401 1uj2_A Uridine-cytidine kinase 96.9 0.00082 2.8E-08 43.4 3.4 24 20-43 21-44 (252)
402 2qby_A CDC6 homolog 1, cell di 96.9 0.00063 2.1E-08 45.8 2.9 21 23-43 47-67 (386)
403 3n70_A Transport activator; si 96.9 0.00079 2.7E-08 39.9 3.0 23 22-44 25-47 (145)
404 3r20_A Cytidylate kinase; stru 96.9 0.00083 2.8E-08 43.4 3.3 22 21-42 9-30 (233)
405 1ltq_A Polynucleotide kinase; 96.8 0.00089 3E-08 44.1 3.5 22 22-43 3-24 (301)
406 1l8q_A Chromosomal replication 96.8 0.0007 2.4E-08 45.1 3.0 21 23-43 39-59 (324)
407 2qen_A Walker-type ATPase; unk 96.8 0.00078 2.7E-08 44.8 3.1 22 23-44 33-54 (350)
408 1q3t_A Cytidylate kinase; nucl 96.8 0.00095 3.3E-08 42.6 3.3 27 17-43 12-38 (236)
409 1ofh_A ATP-dependent HSL prote 96.8 0.00082 2.8E-08 44.1 3.1 22 22-43 51-72 (310)
410 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00065 2.2E-08 48.0 2.7 22 23-44 140-161 (460)
411 2dr3_A UPF0273 protein PH0284; 96.8 0.00083 2.8E-08 42.7 3.0 21 23-43 25-45 (247)
412 1oxx_K GLCV, glucose, ABC tran 96.8 0.00033 1.1E-08 47.8 1.2 22 23-44 33-54 (353)
413 2oap_1 GSPE-2, type II secreti 96.8 0.00075 2.6E-08 48.2 3.0 22 23-44 262-283 (511)
414 3t15_A Ribulose bisphosphate c 96.8 0.0011 3.6E-08 44.0 3.5 22 22-43 37-58 (293)
415 1nij_A Hypothetical protein YJ 96.8 0.0006 2.1E-08 45.7 2.3 22 23-44 6-27 (318)
416 1azs_C GS-alpha; complex (lyas 96.8 0.0011 3.7E-08 46.1 3.6 25 18-42 37-61 (402)
417 3szr_A Interferon-induced GTP- 96.8 0.00051 1.7E-08 50.0 2.0 23 23-45 47-69 (608)
418 3cf0_A Transitional endoplasmi 96.8 0.00087 3E-08 44.4 3.0 22 23-44 51-72 (301)
419 1d2n_A N-ethylmaleimide-sensit 96.8 0.0015 5E-08 42.5 4.0 25 20-44 63-87 (272)
420 1fnn_A CDC6P, cell division co 96.8 0.00091 3.1E-08 45.2 3.1 22 23-44 46-67 (389)
421 2dpy_A FLII, flagellum-specifi 96.8 0.00093 3.2E-08 46.9 3.2 23 23-45 159-181 (438)
422 2fna_A Conserved hypothetical 96.8 0.00085 2.9E-08 44.7 2.9 22 23-44 32-53 (357)
423 1nlf_A Regulatory protein REPA 96.8 0.00092 3.1E-08 43.8 3.0 21 23-43 32-52 (279)
424 4fcw_A Chaperone protein CLPB; 96.7 0.0011 3.8E-08 43.6 3.0 23 22-44 48-70 (311)
425 2qmh_A HPR kinase/phosphorylas 96.7 0.0012 4.2E-08 41.8 3.0 23 22-44 35-57 (205)
426 3a8t_A Adenylate isopentenyltr 96.7 0.0016 5.5E-08 44.3 3.8 22 23-44 42-63 (339)
427 1sxj_E Activator 1 40 kDa subu 96.7 0.0009 3.1E-08 44.9 2.5 20 24-43 39-58 (354)
428 3pxg_A Negative regulator of g 96.7 0.0011 3.8E-08 46.7 3.0 23 22-44 202-224 (468)
429 3uk6_A RUVB-like 2; hexameric 96.7 0.0011 3.8E-08 44.7 2.9 22 23-44 72-93 (368)
430 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0049 1.7E-07 43.5 6.2 63 20-82 66-152 (457)
431 2px0_A Flagellar biosynthesis 96.6 0.0012 4E-08 44.0 2.9 21 22-42 106-126 (296)
432 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0014 4.7E-08 47.1 3.4 22 23-44 49-70 (538)
433 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0012 4.2E-08 44.2 2.9 23 22-44 46-68 (322)
434 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0014 4.8E-08 39.2 2.9 19 24-42 26-44 (149)
435 3zvl_A Bifunctional polynucleo 96.6 0.0021 7.2E-08 44.7 4.1 24 21-44 258-281 (416)
436 2v1u_A Cell division control p 96.6 0.001 3.5E-08 44.8 2.5 23 22-44 45-67 (387)
437 1sxj_C Activator 1 40 kDa subu 96.6 0.0013 4.4E-08 44.2 3.0 21 24-44 49-69 (340)
438 1sxj_D Activator 1 41 kDa subu 96.6 0.0013 4.6E-08 43.9 3.0 21 24-44 61-81 (353)
439 1vma_A Cell division protein F 96.6 0.0014 4.8E-08 43.9 3.1 21 22-42 105-125 (306)
440 3l2o_B F-box only protein 4; s 96.6 0.00039 1.3E-08 46.6 0.4 31 77-107 194-224 (312)
441 1svm_A Large T antigen; AAA+ f 96.6 0.0014 4.6E-08 45.2 3.0 21 23-43 171-191 (377)
442 3pfi_A Holliday junction ATP-d 96.6 0.0014 4.7E-08 43.8 3.0 22 23-44 57-78 (338)
443 3b60_A Lipid A export ATP-bind 96.6 0.0013 4.6E-08 47.5 3.1 22 23-44 371-392 (582)
444 3eie_A Vacuolar protein sortin 96.6 0.0014 4.7E-08 43.9 2.9 23 22-44 52-74 (322)
445 2qby_B CDC6 homolog 3, cell di 96.6 0.0014 4.7E-08 44.4 2.9 22 23-44 47-68 (384)
446 2grj_A Dephospho-COA kinase; T 96.6 0.002 6.8E-08 40.3 3.4 25 20-44 11-35 (192)
447 3euj_A Chromosome partition pr 96.6 0.0015 5E-08 46.5 3.1 21 23-43 31-51 (483)
448 2r8r_A Sensor protein; KDPD, P 96.6 0.0023 7.8E-08 41.2 3.7 24 19-42 4-27 (228)
449 3b5x_A Lipid A export ATP-bind 96.5 0.0016 5.5E-08 47.1 3.3 22 23-44 371-392 (582)
450 1tue_A Replication protein E1; 96.5 0.0011 3.9E-08 42.2 2.1 21 23-43 60-80 (212)
451 3co5_A Putative two-component 96.5 0.0008 2.8E-08 39.8 1.4 23 22-44 28-50 (143)
452 3crm_A TRNA delta(2)-isopenten 96.5 0.0016 5.6E-08 44.0 3.1 21 23-43 7-27 (323)
453 3ake_A Cytidylate kinase; CMP 96.5 0.002 6.7E-08 39.9 3.3 21 23-43 4-24 (208)
454 2qgz_A Helicase loader, putati 96.5 0.0018 6.2E-08 43.2 3.3 22 22-43 153-174 (308)
455 2bjv_A PSP operon transcriptio 96.5 0.0017 5.9E-08 42.0 3.1 23 22-44 30-52 (265)
456 1um8_A ATP-dependent CLP prote 96.5 0.0017 5.7E-08 44.3 3.1 22 22-43 73-94 (376)
457 3exa_A TRNA delta(2)-isopenten 96.5 0.0019 6.5E-08 43.6 3.2 22 23-44 5-26 (322)
458 1pzn_A RAD51, DNA repair and r 96.5 0.0017 5.9E-08 44.1 3.0 22 23-44 133-154 (349)
459 2r62_A Cell division protease 96.5 0.00065 2.2E-08 44.0 0.8 21 23-43 46-66 (268)
460 2qp9_X Vacuolar protein sortin 96.5 0.0019 6.4E-08 43.9 3.0 22 23-44 86-107 (355)
461 4b4t_K 26S protease regulatory 96.5 0.0019 6.5E-08 45.2 3.1 21 23-43 208-228 (428)
462 3ozx_A RNAse L inhibitor; ATP 96.5 0.0018 6E-08 46.6 3.0 22 23-44 27-48 (538)
463 3d8b_A Fidgetin-like protein 1 96.5 0.0019 6.5E-08 43.9 3.0 23 22-44 118-140 (357)
464 3j16_B RLI1P; ribosome recycli 96.5 0.0019 6.6E-08 47.1 3.2 22 23-44 105-126 (608)
465 3d3q_A TRNA delta(2)-isopenten 96.4 0.002 6.9E-08 43.8 3.0 22 22-43 8-29 (340)
466 2yl4_A ATP-binding cassette SU 96.4 0.0014 4.9E-08 47.4 2.4 22 23-44 372-393 (595)
467 3m6a_A ATP-dependent protease 96.4 0.0019 6.6E-08 46.3 3.0 21 23-43 110-130 (543)
468 3foz_A TRNA delta(2)-isopenten 96.4 0.003 1E-07 42.6 3.7 22 23-44 12-33 (316)
469 2z4s_A Chromosomal replication 96.4 0.002 6.9E-08 45.1 3.0 21 23-43 132-152 (440)
470 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.0023 7.7E-08 43.8 3.2 19 24-42 26-44 (365)
471 3hws_A ATP-dependent CLP prote 96.4 0.0022 7.6E-08 43.5 3.1 22 22-43 52-73 (363)
472 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0014 4.8E-08 43.4 2.0 22 22-43 39-60 (324)
473 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0033 1.1E-07 43.1 3.8 23 21-43 24-46 (359)
474 1tf7_A KAIC; homohexamer, hexa 96.4 0.0021 7.2E-08 45.8 3.0 19 24-42 42-60 (525)
475 3lda_A DNA repair protein RAD5 96.4 0.0022 7.6E-08 44.5 3.0 20 23-42 180-199 (400)
476 4b4t_M 26S protease regulatory 96.4 0.0023 8E-08 44.9 3.1 23 22-44 216-238 (434)
477 3qf4_B Uncharacterized ABC tra 96.4 0.0018 6.1E-08 47.0 2.6 22 23-44 383-404 (598)
478 2r44_A Uncharacterized protein 96.4 0.0014 4.7E-08 43.8 1.8 21 23-43 48-68 (331)
479 3bk7_A ABC transporter ATP-bin 96.4 0.0024 8.2E-08 46.6 3.2 22 23-44 119-140 (607)
480 2axn_A 6-phosphofructo-2-kinas 96.3 0.005 1.7E-07 44.1 4.7 23 20-42 34-56 (520)
481 4b4t_L 26S protease subunit RP 96.3 0.0025 8.5E-08 44.8 3.1 22 23-44 217-238 (437)
482 4f4c_A Multidrug resistance pr 96.3 0.0022 7.6E-08 50.5 3.1 21 23-43 1107-1127(1321)
483 2zts_A Putative uncharacterize 96.3 0.0028 9.6E-08 40.2 3.2 20 23-42 32-51 (251)
484 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0028 9.7E-08 45.5 3.4 23 23-45 314-336 (538)
485 3pvs_A Replication-associated 96.3 0.0026 8.7E-08 44.7 3.0 22 23-44 52-73 (447)
486 3vfd_A Spastin; ATPase, microt 96.3 0.0026 8.8E-08 43.6 3.0 23 22-44 149-171 (389)
487 3ozx_A RNAse L inhibitor; ATP 96.3 0.0024 8.3E-08 45.9 3.0 23 23-45 296-318 (538)
488 1c9k_A COBU, adenosylcobinamid 96.3 0.0032 1.1E-07 39.1 3.1 21 24-44 2-22 (180)
489 3tqf_A HPR(Ser) kinase; transf 96.3 0.003 1E-07 39.2 3.0 22 23-44 18-39 (181)
490 2v3c_C SRP54, signal recogniti 96.3 0.002 6.9E-08 45.1 2.5 22 22-43 100-121 (432)
491 2ocp_A DGK, deoxyguanosine kin 96.3 0.0034 1.2E-07 40.1 3.3 23 22-44 3-25 (241)
492 1iqp_A RFCS; clamp loader, ext 96.3 0.0029 9.9E-08 41.7 3.1 22 23-44 48-69 (327)
493 3bk7_A ABC transporter ATP-bin 96.3 0.0031 1.1E-07 46.0 3.4 23 23-45 384-406 (607)
494 1jr3_A DNA polymerase III subu 96.3 0.0029 9.8E-08 42.6 3.1 21 23-43 40-60 (373)
495 4a82_A Cystic fibrosis transme 96.3 0.0016 5.3E-08 47.1 1.8 22 23-44 369-390 (578)
496 1g8p_A Magnesium-chelatase 38 96.3 0.0014 4.9E-08 43.8 1.5 21 23-43 47-67 (350)
497 4f4c_A Multidrug resistance pr 96.3 0.007 2.4E-07 47.7 5.5 28 23-55 446-473 (1321)
498 2ce7_A Cell division protein F 96.2 0.0029 9.8E-08 44.9 3.1 21 23-43 51-71 (476)
499 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0028 9.6E-08 45.2 3.0 22 23-44 66-87 (499)
500 3qf4_A ABC transporter, ATP-bi 96.2 0.002 6.9E-08 46.7 2.3 22 23-44 371-392 (587)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=7.3e-30 Score=164.38 Aligned_cols=91 Identities=35% Similarity=0.604 Sum_probs=74.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
+...+||+|+|++|||||||++||+.+.|.+.+.||++.++..+.+.+++..++++||||+|+++|..+++.|+++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCC
Q psy5771 98 IIGEILCFYGT 108 (108)
Q Consensus 98 i~v~dit~~~s 108 (108)
++|||+++..|
T Consensus 90 ilv~di~~~~S 100 (216)
T 4dkx_A 90 VVVYDITNVNS 100 (216)
T ss_dssp EEEEETTCHHH
T ss_pred EEEeecchhHH
Confidence 99999998753
No 2
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.94 E-value=1.1e-26 Score=145.94 Aligned_cols=107 Identities=46% Similarity=0.737 Sum_probs=87.3
Q ss_pred CCCCCCCCCCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 1 MSSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
|+++.+...+..+........+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 80 (191)
T 2a5j_A 1 MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80 (191)
T ss_dssp ---------CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred CCccccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc
Confidence 78888888888888888999999999999999999999999999998888889888888888999999999999999999
Q ss_pred hhhccchHhhcccCcEEEEEEeccccC
Q psy5771 81 ERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
+++..++..+++.+|++++|||+++..
T Consensus 81 ~~~~~~~~~~~~~~d~ii~v~d~~~~~ 107 (191)
T 2a5j_A 81 ESFRSITRSYYRGAAGALLVYDITRRE 107 (191)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHH
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHH
Confidence 999999999999999999999998753
No 3
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=142.39 Aligned_cols=94 Identities=68% Similarity=1.136 Sum_probs=75.3
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 14 ~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
+....+..+||+++|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus 22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 44556788999999999999999999999999988888999988888889999988999999999999999999999999
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
+|++|+|||+++..
T Consensus 102 ~d~iilv~D~~~~~ 115 (201)
T 2hup_A 102 ANGAILAYDITKRS 115 (201)
T ss_dssp CSEEEEEEETTBHH
T ss_pred CCEEEEEEECCCHH
Confidence 99999999999753
No 4
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=3.7e-25 Score=140.63 Aligned_cols=94 Identities=64% Similarity=1.026 Sum_probs=85.3
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 14 ~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
.+..++..+||+++|++|||||||+++|.++.+...+.+|++.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus 19 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp ---CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTT
T ss_pred CccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 45567788999999999999999999999999988888999989988899999999999999999999999999999999
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
+|++++|||+++..
T Consensus 99 ~d~~i~v~D~~~~~ 112 (201)
T 2ew1_A 99 ANALILTYDITCEE 112 (201)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CCEEEEEEECCCHH
Confidence 99999999998753
No 5
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=8.5e-25 Score=136.98 Aligned_cols=107 Identities=42% Similarity=0.706 Sum_probs=85.8
Q ss_pred CCCCCCCCCCCC-CCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 1 MSSSLTNDHPNT-FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 1 m~~~~~~~~~~~-~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
|+++-....+.+ ......+..+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 80 (189)
T 2gf9_A 1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80 (189)
T ss_dssp -------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCS
T ss_pred CCccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 555554443332 2344567889999999999999999999999999888889999888888888888899999999999
Q ss_pred hhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 80 QERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
++++..++..+++.+|++++|||+++..
T Consensus 81 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 108 (189)
T 2gf9_A 81 QERYRTITTAYYRGAMGFLLMYDIANQE 108 (189)
T ss_dssp CCSSCCSGGGGGTTCSEEEEEEETTCHH
T ss_pred cHHHhhhHHHhccCCCEEEEEEECCCHH
Confidence 9999999999999999999999998753
No 6
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.92 E-value=9.3e-25 Score=137.08 Aligned_cols=92 Identities=49% Similarity=0.818 Sum_probs=84.4
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
...++..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 44466789999999999999999999999999888889999888888888999999999999999999999999999999
Q ss_pred cEEEEEEecccc
Q psy5771 95 NGVIIGEILCFY 106 (108)
Q Consensus 95 ~~~i~v~dit~~ 106 (108)
|++|+|||+++.
T Consensus 99 d~vi~v~D~~~~ 110 (193)
T 2oil_A 99 VGALLVFDLTKH 110 (193)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999875
No 7
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=136.52 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=74.7
Q ss_pred CCCCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc
Q psy5771 7 NDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 7 ~~~~~~~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 86 (108)
.+..+.+........+||+++|++|||||||+++|.++.+...+.+|.+.++ ...+.+++..+.+.+||++|++++..+
T Consensus 7 ~~~~~~~~~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (187)
T 3c5c_A 7 HSSGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC 85 (187)
T ss_dssp -------------CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT
T ss_pred ccchhhhHHhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH
Confidence 3333344455566789999999999999999999999999888999998665 456778889999999999999998875
Q ss_pred hHhhcccCcEEEEEEeccccC
Q psy5771 87 TQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~~~ 107 (108)
..+++.+|++++|||+++..
T Consensus 86 -~~~~~~~~~~ilv~d~~~~~ 105 (187)
T 3c5c_A 86 -ERYLNWAHAFLVVYSVDSRQ 105 (187)
T ss_dssp -HHHHTTCSEEEEEEETTCHH
T ss_pred -HHHHhhCCEEEEEEECCCHH
Confidence 67999999999999999754
No 8
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.92 E-value=5.8e-25 Score=138.33 Aligned_cols=96 Identities=48% Similarity=0.797 Sum_probs=77.7
Q ss_pred CCCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhc
Q psy5771 12 TFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYY 91 (108)
Q Consensus 12 ~~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~ 91 (108)
...+...+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..++
T Consensus 17 ~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 96 (192)
T 2il1_A 17 RGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY 96 (192)
T ss_dssp -----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHH
T ss_pred CCCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHh
Confidence 34455667889999999999999999999999998888889998888888999999899999999999999999999999
Q ss_pred ccCcEEEEEEeccccC
Q psy5771 92 RSANGVIIGEILCFYG 107 (108)
Q Consensus 92 ~~~~~~i~v~dit~~~ 107 (108)
+.+|++|+|||+++..
T Consensus 97 ~~~d~iilV~D~~~~~ 112 (192)
T 2il1_A 97 RSAKGIILVYDITKKE 112 (192)
T ss_dssp HHCSEEEEEEETTCHH
T ss_pred cCCCEEEEEEECcCHH
Confidence 9999999999998753
No 9
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=1.3e-24 Score=139.11 Aligned_cols=91 Identities=20% Similarity=0.353 Sum_probs=77.8
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCc
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 95 (108)
......+||+++|++|||||||+++|.++.+...+.||.+.++ ...+.+++..+.+.+||++|++++..+++.+++.+|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3445679999999999999999999999999988899998665 566778888899999999999999999999999999
Q ss_pred EEEEEEeccccC
Q psy5771 96 GVIIGEILCFYG 107 (108)
Q Consensus 96 ~~i~v~dit~~~ 107 (108)
++|+|||+++..
T Consensus 101 ~~i~v~d~~~~~ 112 (214)
T 3q3j_B 101 AVLLCFDISRPE 112 (214)
T ss_dssp EEEEEEETTCTH
T ss_pred EEEEEEECcCHH
Confidence 999999999864
No 10
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=137.46 Aligned_cols=93 Identities=48% Similarity=0.864 Sum_probs=73.2
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
....+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 98 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 98 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence 33456789999999999999999999999999888889998888888889999899999999999999999999999999
Q ss_pred cEEEEEEeccccC
Q psy5771 95 NGVIIGEILCFYG 107 (108)
Q Consensus 95 ~~~i~v~dit~~~ 107 (108)
|++|+|||+++..
T Consensus 99 d~~i~v~d~~~~~ 111 (200)
T 2o52_A 99 AGALLVYDITSRE 111 (200)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEEECcCHH
Confidence 9999999998753
No 11
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.91 E-value=5e-24 Score=133.69 Aligned_cols=93 Identities=55% Similarity=0.969 Sum_probs=85.6
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
....+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 44557889999999999999999999999999888889999889889999999999999999999999999999999999
Q ss_pred cEEEEEEeccccC
Q psy5771 95 NGVIIGEILCFYG 107 (108)
Q Consensus 95 ~~~i~v~dit~~~ 107 (108)
|++++|||+++..
T Consensus 90 d~~i~v~d~~~~~ 102 (196)
T 3tkl_A 90 HGIIVVYDVTDQE 102 (196)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEEECcCHH
Confidence 9999999999753
No 12
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=4.2e-24 Score=133.82 Aligned_cols=90 Identities=49% Similarity=0.801 Sum_probs=83.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.....+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 44567999999999999999999999999988888999988888889999999999999999999999999999999999
Q ss_pred EEEEEecccc
Q psy5771 97 VIIGEILCFY 106 (108)
Q Consensus 97 ~i~v~dit~~ 106 (108)
+|+|||+++.
T Consensus 91 ii~v~d~~~~ 100 (195)
T 1x3s_A 91 VILVYDVTRR 100 (195)
T ss_dssp EEEEEETTCH
T ss_pred EEEEEECcCH
Confidence 9999999875
No 13
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.91 E-value=1.4e-24 Score=138.51 Aligned_cols=93 Identities=42% Similarity=0.725 Sum_probs=82.2
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCe----------EEEEEEeeCCChhhhc
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK----------KVKLQIWDTAGQERFR 84 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~l~l~D~~g~~~~~ 84 (108)
...++..+||+|+|+++||||||+++|.++.+...+.+|.+.++....+.+++. .+.+.+||++|++++.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 444578899999999999999999999999998888899998888888887766 7899999999999999
Q ss_pred cchHhhcccCcEEEEEEeccccC
Q psy5771 85 TITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 85 ~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
.++..+++.+|++|+|||+++..
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~ 121 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQ 121 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHH
T ss_pred hHHHHHhcCCCEEEEEEECcCHH
Confidence 99999999999999999998753
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.91 E-value=4.7e-24 Score=131.75 Aligned_cols=91 Identities=46% Similarity=0.921 Sum_probs=83.8
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCc
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 95 (108)
...+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34567899999999999999999999999998888899988888888899999999999999999999999999999999
Q ss_pred EEEEEEecccc
Q psy5771 96 GVIIGEILCFY 106 (108)
Q Consensus 96 ~~i~v~dit~~ 106 (108)
++++|||+++.
T Consensus 90 ~~i~v~d~~~~ 100 (179)
T 1z0f_A 90 GALMVYDITRR 100 (179)
T ss_dssp EEEEEEETTCH
T ss_pred EEEEEEeCcCH
Confidence 99999999875
No 15
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.91 E-value=6.4e-24 Score=133.46 Aligned_cols=93 Identities=26% Similarity=0.440 Sum_probs=80.8
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 14 ~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
........+||+++|++|||||||+++|.++.+...+.+|.+.++. ..+.+++..+.+.+||++|++++..++..++++
T Consensus 16 ~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 94 (194)
T 3reg_A 16 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYAD 94 (194)
T ss_dssp -----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred cccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccC
Confidence 3455677899999999999999999999999998888899986654 567889999999999999999999999999999
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
+|++++|||+++..
T Consensus 95 ~d~~i~v~d~~~~~ 108 (194)
T 3reg_A 95 SDVVLLCFAVNNRT 108 (194)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CcEEEEEEECCCHH
Confidence 99999999999753
No 16
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=4.6e-24 Score=134.13 Aligned_cols=94 Identities=38% Similarity=0.558 Sum_probs=83.2
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 14 ~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
+...++..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 34456788999999999999999999999999888888999988888888888889999999999999999999999999
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
+|++++|||+++..
T Consensus 96 ~d~iilV~d~~~~~ 109 (192)
T 2fg5_A 96 SAAAVIVYDITKQD 109 (192)
T ss_dssp CSEEEEEEETTCTH
T ss_pred CCEEEEEEeCCCHH
Confidence 99999999998754
No 17
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=5.8e-24 Score=132.43 Aligned_cols=91 Identities=51% Similarity=0.943 Sum_probs=84.3
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
..+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 45678999999999999999999999999988888999988888889999988999999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+++|||+++..
T Consensus 86 ~i~v~d~~~~~ 96 (186)
T 2bme_A 86 ALLVYDITSRE 96 (186)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECcCHH
Confidence 99999998753
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.91 E-value=5.5e-24 Score=131.65 Aligned_cols=92 Identities=54% Similarity=0.894 Sum_probs=81.6
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCc
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 95 (108)
...+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 34567899999999999999999999999988888899998898899999999999999999999999999999999999
Q ss_pred EEEEEEeccccC
Q psy5771 96 GVIIGEILCFYG 107 (108)
Q Consensus 96 ~~i~v~dit~~~ 107 (108)
++++|||+++..
T Consensus 84 ~~i~v~d~~~~~ 95 (181)
T 3tw8_B 84 GVIVVYDVTSAE 95 (181)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECCCHH
Confidence 999999998753
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.91 E-value=6.1e-24 Score=132.13 Aligned_cols=92 Identities=30% Similarity=0.470 Sum_probs=82.2
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
.......+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34456789999999999999999999999999888989988666 67788899999999999999999999999999999
Q ss_pred cEEEEEEeccccC
Q psy5771 95 NGVIIGEILCFYG 107 (108)
Q Consensus 95 ~~~i~v~dit~~~ 107 (108)
|++++|||+++..
T Consensus 91 d~~i~v~d~~~~~ 103 (183)
T 3kkq_A 91 DGFLIVYSVTDKA 103 (183)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEEECCCHH
Confidence 9999999999753
No 20
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.91 E-value=2.2e-24 Score=134.39 Aligned_cols=103 Identities=25% Similarity=0.351 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh
Q psy5771 1 MSSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (108)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 80 (108)
|+++.+......+........+||+++|++|||||||+++|.++.+ ..+.+|.+.. ...+.+++ +.+.+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~ 75 (181)
T 2h17_A 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQ 75 (181)
T ss_dssp --------------------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSS
T ss_pred CCcccccccccCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCC
Confidence 6777777777777777778889999999999999999999999988 5577888743 45666665 67899999999
Q ss_pred hhhccchHhhcccCcEEEEEEeccccCC
Q psy5771 81 ERFRTITQSYYRSANGVIIGEILCFYGT 108 (108)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~dit~~~s 108 (108)
+++..++..+++.+|++++|||+++..|
T Consensus 76 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s 103 (181)
T 2h17_A 76 ESLRSSWNTYYTNTEFVIVVVDSTDRER 103 (181)
T ss_dssp GGGTCGGGGGGTTCCEEEEEEETTCTTT
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence 9999999999999999999999998653
No 21
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=6.4e-24 Score=131.20 Aligned_cols=90 Identities=40% Similarity=0.702 Sum_probs=80.2
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.....+||+++|++|||||||++++.++.+...+.|+.+.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45677999999999999999999999999888888999988888889999999999999999999999999999999999
Q ss_pred EEEEEecccc
Q psy5771 97 VIIGEILCFY 106 (108)
Q Consensus 97 ~i~v~dit~~ 106 (108)
+++|||+++.
T Consensus 83 ~i~v~d~~~~ 92 (177)
T 1wms_A 83 CLLTFSVDDS 92 (177)
T ss_dssp EEEEEETTCH
T ss_pred EEEEEECcCH
Confidence 9999999875
No 22
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=6.5e-24 Score=134.50 Aligned_cols=91 Identities=57% Similarity=0.971 Sum_probs=84.5
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
..+..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35678999999999999999999999999988888999988888889999999999999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+|+|||+++..
T Consensus 84 vilv~d~~~~~ 94 (206)
T 2bcg_Y 84 IIIVYDVTDQE 94 (206)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECcCHH
Confidence 99999998753
No 23
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.91 E-value=5.3e-24 Score=133.36 Aligned_cols=91 Identities=47% Similarity=0.872 Sum_probs=81.7
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc-cchHhhcccC
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-TITQSYYRSA 94 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-~~~~~~~~~~ 94 (108)
......+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++. .++..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 334567999999999999999999999999988888999988888899999989999999999999998 8999999999
Q ss_pred cEEEEEEecccc
Q psy5771 95 NGVIIGEILCFY 106 (108)
Q Consensus 95 ~~~i~v~dit~~ 106 (108)
|++|+|||+++.
T Consensus 95 d~iilv~D~~~~ 106 (189)
T 1z06_A 95 HAVVFVYDMTNM 106 (189)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999875
No 24
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.91 E-value=1.9e-24 Score=133.65 Aligned_cols=89 Identities=31% Similarity=0.508 Sum_probs=81.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECC-eEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDG-KKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
...+||+++|++|||||||+++|.++.+...+.||.+.++....+.+++ ..+.+.+||++|++.+..++..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4569999999999999999999999998877889998888888888876 678999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 84 i~v~d~~~~~ 93 (178)
T 2hxs_A 84 LLVYDITNYQ 93 (178)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999753
No 25
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=9.6e-25 Score=135.78 Aligned_cols=91 Identities=55% Similarity=0.979 Sum_probs=59.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
..+..+||+++|++|||||||+++|.++.+...+.|+.+.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 34678999999999999999999999999888888999988888888899999999999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+++|||+++..
T Consensus 84 ~i~v~d~~~~~ 94 (183)
T 2fu5_C 84 IMLVYDITNEK 94 (183)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECcCHH
Confidence 99999999753
No 26
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.91 E-value=6.9e-24 Score=129.82 Aligned_cols=89 Identities=35% Similarity=0.660 Sum_probs=82.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999998888899998888888999998999999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 83 ~v~d~~~~~ 91 (168)
T 1z2a_A 83 LVFSTTDRE 91 (168)
T ss_dssp EEEETTCHH
T ss_pred EEEECcCHH
Confidence 999998753
No 27
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.91 E-value=5e-24 Score=135.69 Aligned_cols=90 Identities=24% Similarity=0.445 Sum_probs=79.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.....+||+++|++|||||||+++|.++.+...+.||.+.++ ...+.+++..+.+.+||++|+++|..+++.+++.+|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 346779999999999999999999999999888889998665 4567778888999999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+|+|||+++..
T Consensus 103 ~ilv~D~~~~~ 113 (205)
T 1gwn_A 103 VLICFDISRPE 113 (205)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECCCHH
Confidence 99999999753
No 28
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.1e-23 Score=128.95 Aligned_cols=88 Identities=41% Similarity=0.679 Sum_probs=81.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||++++.++.+...+.|+.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999999888888999988888888999999999999999999999999999999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 82 v~d~~~~~ 89 (170)
T 1ek0_A 82 VYDVTKPQ 89 (170)
T ss_dssp EEETTCHH
T ss_pred EEecCChH
Confidence 99998753
No 29
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=1e-23 Score=130.24 Aligned_cols=91 Identities=37% Similarity=0.603 Sum_probs=82.6
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCc
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 95 (108)
..+...+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 34456799999999999999999999999998888899998898889999999999999999999999999999999999
Q ss_pred EEEEEEecccc
Q psy5771 96 GVIIGEILCFY 106 (108)
Q Consensus 96 ~~i~v~dit~~ 106 (108)
++++|||+++.
T Consensus 89 ~~i~v~d~~~~ 99 (179)
T 2y8e_A 89 VAVVVYDITNT 99 (179)
T ss_dssp EEEEEEETTCH
T ss_pred EEEEEEECCCH
Confidence 99999999875
No 30
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.91 E-value=1.2e-23 Score=128.83 Aligned_cols=90 Identities=41% Similarity=0.657 Sum_probs=83.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
+...+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34679999999999999999999999999888889999888888888998899999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 83 i~v~d~~~~~ 92 (170)
T 1r2q_A 83 IVVYDITNEE 92 (170)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999998753
No 31
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=1.4e-23 Score=130.11 Aligned_cols=90 Identities=40% Similarity=0.639 Sum_probs=82.5
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.+...+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45677999999999999999999999999988888999988888888899889999999999999999999999999999
Q ss_pred EEEEEecccc
Q psy5771 97 VIIGEILCFY 106 (108)
Q Consensus 97 ~i~v~dit~~ 106 (108)
+++|||+++.
T Consensus 88 ~i~v~d~~~~ 97 (181)
T 2efe_B 88 AIIVFDVTNQ 97 (181)
T ss_dssp EEEEEETTCH
T ss_pred EEEEEECCCH
Confidence 9999999875
No 32
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2e-25 Score=140.14 Aligned_cols=94 Identities=45% Similarity=0.759 Sum_probs=85.9
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 14 ~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
....++..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 35556788999999999999999999999999888888999888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
+|++++|||+++..
T Consensus 96 ~d~~i~v~d~~~~~ 109 (191)
T 3dz8_A 96 AMGFILMYDITNEE 109 (191)
T ss_dssp CCEEEEEEETTCHH
T ss_pred CCEEEEEEECcCHH
Confidence 99999999999753
No 33
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.91 E-value=4.8e-24 Score=130.90 Aligned_cols=90 Identities=44% Similarity=0.713 Sum_probs=76.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
.+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999999888889999888888888888999999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 83 i~v~d~~~~~ 92 (170)
T 1z08_A 83 ILVYDITDED 92 (170)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECcCHH
Confidence 9999998753
No 34
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.5e-24 Score=136.03 Aligned_cols=91 Identities=51% Similarity=0.898 Sum_probs=77.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.++..+||+|+|+++||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 35678999999999999999999999999988888999988888889999988999999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+|+|||+++..
T Consensus 89 vilV~D~~~~~ 99 (223)
T 3cpj_B 89 ALIVYDISKSS 99 (223)
T ss_dssp EEEEEC-CCHH
T ss_pred EEEEEeCCCHH
Confidence 99999998753
No 35
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.91 E-value=2e-23 Score=128.00 Aligned_cols=90 Identities=39% Similarity=0.571 Sum_probs=83.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
....+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888889999888888889999999999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 83 i~v~d~~~~~ 92 (170)
T 1z0j_A 83 IIVYDITKEE 92 (170)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECcCHH
Confidence 9999998753
No 36
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=136.19 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=75.3
Q ss_pred CCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc-chHhhcc
Q psy5771 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT-ITQSYYR 92 (108)
Q Consensus 14 ~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~ 92 (108)
.+......+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+.. +++.+++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 344556789999999999999999999976544334456666677788888999999999999999998765 7888999
Q ss_pred cCcEEEEEEeccccC
Q psy5771 93 SANGVIIGEILCFYG 107 (108)
Q Consensus 93 ~~~~~i~v~dit~~~ 107 (108)
.+|++|+|||+++..
T Consensus 96 ~~d~~ilv~d~~~~~ 110 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRR 110 (195)
T ss_dssp HCSEEEEEEETTCHH
T ss_pred cCCEEEEEEECCCHH
Confidence 999999999999764
No 37
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=135.17 Aligned_cols=91 Identities=45% Similarity=0.761 Sum_probs=72.8
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
..+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34567999999999999999999999999888888999988888889999999999999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+|+|||+++..
T Consensus 104 iilv~d~~~~~ 114 (199)
T 2p5s_A 104 VLLLYDVTCEK 114 (199)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECCChH
Confidence 99999998753
No 38
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.90 E-value=1e-23 Score=131.61 Aligned_cols=89 Identities=25% Similarity=0.446 Sum_probs=79.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
+...+||+++|++|||||||+++|.++.+...+.||.+..+ ...+.+++..+.+.+||++|++.|..+++.+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999999888889998655 45677888889999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 83 i~v~d~~~~~ 92 (184)
T 1m7b_A 83 LICFDISRPE 92 (184)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999753
No 39
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=134.62 Aligned_cols=103 Identities=21% Similarity=0.313 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCC-ccccccCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 1 MSSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGD-FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
|+++.+...+..+........+||+++|++|||||||+++|.++. +...+.+|.+ +....+.+++ +.+.+||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G 76 (190)
T 2h57_A 1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSG 76 (190)
T ss_dssp --------------------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECC
T ss_pred CCccccccccccCcccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCC
Confidence 677777777777777777888999999999999999999999887 5667788887 5556667665 6789999999
Q ss_pred hhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 80 QERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
++++..++..+++.+|++++|||+++..
T Consensus 77 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 104 (190)
T 2h57_A 77 QGRYRNLWEHYYKEGQAIIFVIDSSDRL 104 (190)
T ss_dssp STTTGGGGGGGGGGCSEEEEEEETTCHH
T ss_pred CHHHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 9999999999999999999999998753
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.90 E-value=1.6e-23 Score=132.28 Aligned_cols=91 Identities=43% Similarity=0.780 Sum_probs=83.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
..+..+||+|+|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 34678999999999999999999999999988888999988888888889999999999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+|+|||+++..
T Consensus 84 ii~v~d~~~~~ 94 (203)
T 1zbd_A 84 FILMYDITNEE 94 (203)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECcCHH
Confidence 99999998753
No 41
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=133.07 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=71.3
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
.......+||+++|++|||||||+++|.++.+...+.||.+..+ ...+.+++..+.+.+||++|++++..++..+++.+
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34456779999999999999999999999998888889887444 56778889899999999999999999999999999
Q ss_pred cEEEEEEeccccC
Q psy5771 95 NGVIIGEILCFYG 107 (108)
Q Consensus 95 ~~~i~v~dit~~~ 107 (108)
|++++|||+++..
T Consensus 93 ~~~i~v~d~~~~~ 105 (201)
T 2q3h_A 93 DIFLLCFSVVSPS 105 (201)
T ss_dssp SEEEEEEETTCHH
T ss_pred cEEEEEEECCCHH
Confidence 9999999999754
No 42
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.90 E-value=2.8e-23 Score=131.44 Aligned_cols=89 Identities=28% Similarity=0.480 Sum_probs=80.2
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
....+||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 457899999999999999999999999998888899886654 4577888889999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 101 i~v~d~~~~~ 110 (201)
T 2gco_A 101 LMCFSIDSPD 110 (201)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999753
No 43
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.90 E-value=1.9e-23 Score=129.73 Aligned_cols=88 Identities=30% Similarity=0.460 Sum_probs=80.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4578999999999999999999999999888999998666 678888999999999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 83 ~v~d~~~~~ 91 (181)
T 3t5g_A 83 LVYSVTSIK 91 (181)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999999753
No 44
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.90 E-value=1.4e-23 Score=131.46 Aligned_cols=88 Identities=23% Similarity=0.256 Sum_probs=74.7
Q ss_pred CCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcc
Q psy5771 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92 (108)
Q Consensus 13 ~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~ 92 (108)
++.......+||+++|++|||||||+++|+++.+...+.||.+ .+...+.++++.+.+.+||++|++++. +++
T Consensus 12 ~~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~ 84 (184)
T 3ihw_A 12 ENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAA 84 (184)
T ss_dssp ----CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHH
T ss_pred CCCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eec
Confidence 3444556789999999999999999999999999888888854 445888899999999999999998876 888
Q ss_pred cCcEEEEEEeccccC
Q psy5771 93 SANGVIIGEILCFYG 107 (108)
Q Consensus 93 ~~~~~i~v~dit~~~ 107 (108)
.+|++++|||+++..
T Consensus 85 ~~~~~i~v~d~~~~~ 99 (184)
T 3ihw_A 85 WVDAVVFVFSLEDEI 99 (184)
T ss_dssp HCSEEEEEEETTCHH
T ss_pred CCCEEEEEEECcCHH
Confidence 999999999999854
No 45
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.90 E-value=2.5e-23 Score=128.63 Aligned_cols=89 Identities=30% Similarity=0.475 Sum_probs=80.6
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
+...+||+++|++|||||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 456789999999999999999999999998888899886655 6778888889999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 85 i~v~d~~~~~ 94 (181)
T 2fn4_A 85 LLVFAINDRQ 94 (181)
T ss_dssp EEEEETTCHH
T ss_pred EEEEeCCCHH
Confidence 9999999753
No 46
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.90 E-value=8.4e-24 Score=129.68 Aligned_cols=87 Identities=56% Similarity=0.905 Sum_probs=74.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999888888999888888888888888999999999999999999999999999999
Q ss_pred EEecccc
Q psy5771 100 GEILCFY 106 (108)
Q Consensus 100 v~dit~~ 106 (108)
|||+++.
T Consensus 82 v~d~~~~ 88 (170)
T 1g16_A 82 VYDITDE 88 (170)
T ss_dssp EEETTCH
T ss_pred EEECCCH
Confidence 9999875
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.1e-23 Score=129.21 Aligned_cols=91 Identities=51% Similarity=0.913 Sum_probs=74.6
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
..++..+||+++|++|||||||+++|.++.+. ..+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34577899999999999999999999999885 46778998888888888899999999999999999999999999999
Q ss_pred cEEEEEEecccc
Q psy5771 95 NGVIIGEILCFY 106 (108)
Q Consensus 95 ~~~i~v~dit~~ 106 (108)
|++++|||+++.
T Consensus 85 d~ii~v~d~~~~ 96 (180)
T 2g6b_A 85 HALLLLYDVTNK 96 (180)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999999875
No 48
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.4e-23 Score=131.84 Aligned_cols=90 Identities=27% Similarity=0.428 Sum_probs=80.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
.+...+||+++|++|||||||+++|.++.+...+.||.+..+ ...+.++++.+.+.+||++|++++..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345779999999999999999999999999888889987554 5667788888999999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+++|||+++..
T Consensus 93 ~i~v~d~~~~~ 103 (194)
T 2atx_A 93 FLICFSVVNPA 103 (194)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECCCHH
Confidence 99999998764
No 49
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.90 E-value=1.6e-23 Score=132.51 Aligned_cols=89 Identities=38% Similarity=0.676 Sum_probs=81.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
....+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999999888889999888888888888889999999999999999999999999999
Q ss_pred EEEEecccc
Q psy5771 98 IIGEILCFY 106 (108)
Q Consensus 98 i~v~dit~~ 106 (108)
|+|||+++.
T Consensus 85 i~v~d~~~~ 93 (207)
T 1vg8_A 85 VLVFDVTAP 93 (207)
T ss_dssp EEEEETTCH
T ss_pred EEEEECCCH
Confidence 999999875
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=3e-23 Score=131.70 Aligned_cols=91 Identities=56% Similarity=0.913 Sum_probs=81.2
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCc
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 95 (108)
...+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34566799999999999999999999999988888899998888888999998899999999999999999999999999
Q ss_pred EEEEEEecccc
Q psy5771 96 GVIIGEILCFY 106 (108)
Q Consensus 96 ~~i~v~dit~~ 106 (108)
++++|||+++.
T Consensus 95 ~ii~v~d~~~~ 105 (213)
T 3cph_A 95 GIILVYDVTDE 105 (213)
T ss_dssp EEEEEEETTCH
T ss_pred EEEEEEECCCH
Confidence 99999999875
No 51
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.90 E-value=5.1e-23 Score=128.97 Aligned_cols=103 Identities=25% Similarity=0.384 Sum_probs=75.5
Q ss_pred CCCCCCCCC-CCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC
Q psy5771 1 MSSSLTNDH-PNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (108)
Q Consensus 1 m~~~~~~~~-~~~~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g 79 (108)
|+++-.... +..+........+||+|+|++|||||||+++|.++.+...+.||.+.++. .+..+ .+.+.+||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G 76 (188)
T 1zd9_A 1 MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGG 76 (188)
T ss_dssp ------------------CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECC
T ss_pred CCcccccccccccccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCC
Confidence 555544333 33334444567899999999999999999999999998888899986554 34444 46789999999
Q ss_pred hhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 80 QERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
++++..++..+++.+|++++|||+++..
T Consensus 77 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 104 (188)
T 1zd9_A 77 QPRFRSMWERYCRGVSAIVYMVDAADQE 104 (188)
T ss_dssp SHHHHTTHHHHHTTCSEEEEEEETTCGG
T ss_pred CHhHHHHHHHHHccCCEEEEEEECCCHH
Confidence 9999999999999999999999999864
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.90 E-value=3.2e-23 Score=129.35 Aligned_cols=91 Identities=40% Similarity=0.712 Sum_probs=81.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeE-EEEEEECCe---------EEEEEEeeCCChhhhccc
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFS-MKTVNIDGK---------KVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~l~l~D~~g~~~~~~~ 86 (108)
..+..+||+++|++|||||||+++|.++.+...+.++.+.++. ...+.+++. .+.+.+||++|++++..+
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4577899999999999999999999999998888899998877 667777765 789999999999999999
Q ss_pred hHhhcccCcEEEEEEeccccC
Q psy5771 87 TQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~~~ 107 (108)
+..+++.+|++++|||+++..
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~ 107 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQ 107 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHH
T ss_pred HHHHHcCCCEEEEEEECCCHH
Confidence 999999999999999998753
No 53
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=5.4e-23 Score=129.22 Aligned_cols=93 Identities=19% Similarity=0.329 Sum_probs=72.1
Q ss_pred CCCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhh
Q psy5771 12 TFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSY 90 (108)
Q Consensus 12 ~~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~ 90 (108)
.++...+...+||+|+|++|||||||+++|.++.+.. .+.||.+ +....+.. ..+.+.+||++|++++..++..+
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~ 83 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEK--GRVAFTVFDMGGAKKFRGLWETY 83 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEE--TTEEEEEEEECCSGGGGGGGGGG
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEe--CCEEEEEEECCCCHhHHHHHHHH
Confidence 3445667788999999999999999999999999988 7889998 33444444 44779999999999999999999
Q ss_pred cccCcEEEEEEeccccCC
Q psy5771 91 YRSANGVIIGEILCFYGT 108 (108)
Q Consensus 91 ~~~~~~~i~v~dit~~~s 108 (108)
++.+|++|+|||+++..|
T Consensus 84 ~~~~d~ii~v~D~~~~~s 101 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLR 101 (199)
T ss_dssp CTTCSEEEEEEETTCGGG
T ss_pred HhcCCEEEEEEECCcHHH
Confidence 999999999999998653
No 54
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.89 E-value=1.1e-24 Score=137.57 Aligned_cols=98 Identities=53% Similarity=0.930 Sum_probs=83.2
Q ss_pred CCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHh
Q psy5771 10 PNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQS 89 (108)
Q Consensus 10 ~~~~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~ 89 (108)
++.......+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..
T Consensus 22 pm~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 101 (199)
T 3l0i_B 22 PMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSS 101 (199)
T ss_dssp ---CC-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC
T ss_pred cccccCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHH
Confidence 34444555678899999999999999999999999988888889888888889999999999999999999999999999
Q ss_pred hcccCcEEEEEEeccccC
Q psy5771 90 YYRSANGVIIGEILCFYG 107 (108)
Q Consensus 90 ~~~~~~~~i~v~dit~~~ 107 (108)
+++.+|++++|||+++..
T Consensus 102 ~~~~~d~~i~v~d~~~~~ 119 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQE 119 (199)
T ss_dssp --CCCSEEEECC-CCCSH
T ss_pred HhhcCCEEEEEEECCCHH
Confidence 999999999999999854
No 55
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.89 E-value=2.9e-23 Score=132.03 Aligned_cols=88 Identities=33% Similarity=0.512 Sum_probs=77.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||+++|.++.+...+.||.+..+ ...+.+++..+.+.+||++|+++|..+++.+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3569999999999999999999999999888889988544 556778888899999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 86 lv~d~~~~~ 94 (212)
T 2j0v_A 86 LAFSLISKA 94 (212)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999999753
No 56
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.89 E-value=4.7e-23 Score=129.31 Aligned_cols=88 Identities=39% Similarity=0.644 Sum_probs=79.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeE-----------------------------
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKK----------------------------- 69 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----------------------------- 69 (108)
+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 456899999999999999999999999988889999988888888877655
Q ss_pred --------EEEEEeeCCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 70 --------VKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 70 --------~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
+.+.+||++|++.+..++..+++.+|++++|||+++.
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~ 129 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS 129 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 8899999999999999999999999999999999875
No 57
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.89 E-value=1.6e-23 Score=134.10 Aligned_cols=93 Identities=34% Similarity=0.530 Sum_probs=84.9
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
...+...+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34556779999999999999999999998888888889999888888889999999999999999999999999999999
Q ss_pred cEEEEEEeccccC
Q psy5771 95 NGVIIGEILCFYG 107 (108)
Q Consensus 95 ~~~i~v~dit~~~ 107 (108)
|++++|||+++..
T Consensus 89 ~~~i~v~d~~~~~ 101 (221)
T 3gj0_A 89 QCAIIMFDVTSRV 101 (221)
T ss_dssp CEEEEEEETTCHH
T ss_pred CEEEEEEECCCHH
Confidence 9999999999753
No 58
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.89 E-value=1.2e-22 Score=126.15 Aligned_cols=87 Identities=31% Similarity=0.457 Sum_probs=78.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 56899999999999999999999999988888888744 45677888999999999999999999999999999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 83 v~d~~~~~ 90 (186)
T 1mh1_A 83 CFSLVSPA 90 (186)
T ss_dssp EEETTCHH
T ss_pred EEECCChh
Confidence 99998753
No 59
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=131.34 Aligned_cols=89 Identities=27% Similarity=0.405 Sum_probs=76.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
....+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34679999999999999999999999999988889988665 56667777788999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 100 i~v~d~~~~~ 109 (201)
T 3oes_A 100 VLVYSVTSLH 109 (201)
T ss_dssp EEEEETTCHH
T ss_pred EEEEeCCCHH
Confidence 9999999753
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.89 E-value=1.6e-23 Score=129.64 Aligned_cols=90 Identities=37% Similarity=0.686 Sum_probs=68.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC-CeEEEEEEeeCCChhhhccchHhhcccCcE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~ 96 (108)
....+||+++|++|||||||++++.++.+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999999988888999888888888776 567889999999999999999999999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+++|||+++..
T Consensus 85 ~i~v~d~~~~~ 95 (182)
T 1ky3_A 85 CVLVYDVTNAS 95 (182)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECCChH
Confidence 99999998753
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.89 E-value=6.8e-23 Score=127.28 Aligned_cols=91 Identities=33% Similarity=0.529 Sum_probs=78.3
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCc
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 95 (108)
......+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3345679999999999999999999999999888888887544 456778888899999999999999999999999999
Q ss_pred EEEEEEeccccC
Q psy5771 96 GVIIGEILCFYG 107 (108)
Q Consensus 96 ~~i~v~dit~~~ 107 (108)
++++|||+++..
T Consensus 92 ~~i~v~d~~~~~ 103 (187)
T 2a9k_A 92 GFLCVFSITEME 103 (187)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECcCHH
Confidence 999999998753
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.89 E-value=7e-23 Score=125.23 Aligned_cols=86 Identities=33% Similarity=0.537 Sum_probs=77.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999999888889988554 46677788889999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 82 ~d~~~~~ 88 (167)
T 1c1y_A 82 YSITAQS 88 (167)
T ss_dssp EETTCHH
T ss_pred EECCCHH
Confidence 9999753
No 63
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.89 E-value=6.5e-23 Score=131.01 Aligned_cols=88 Identities=33% Similarity=0.494 Sum_probs=58.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||+++|.++.+...+.+|.+.. +...+.+++..+.+.+||++|++++..+++.+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 457999999999999999999999999888888888644 4567788899999999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 111 ~v~d~~~~~ 119 (214)
T 2j1l_A 111 LCFDVTSPN 119 (214)
T ss_dssp EEEETTCHH
T ss_pred EEEECcCHH
Confidence 999999753
No 64
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.88 E-value=2.4e-22 Score=126.49 Aligned_cols=92 Identities=50% Similarity=0.906 Sum_probs=84.3
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccC
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
....+..+||+++|++|||||||++++.+..+...+.||.+.++....+.++++.+.+.+||++|++++..++..+++.+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 34556789999999999999999999999999888899999998889999999999999999999999999999999999
Q ss_pred cEEEEEEecccc
Q psy5771 95 NGVIIGEILCFY 106 (108)
Q Consensus 95 ~~~i~v~dit~~ 106 (108)
+++++|||+++.
T Consensus 103 ~~~i~v~d~~~~ 114 (191)
T 1oix_A 103 VGALLVYDIAKH 114 (191)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999999864
No 65
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=127.66 Aligned_cols=89 Identities=34% Similarity=0.534 Sum_probs=79.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
....+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 44579999999999999999999999998888888887544 56778888889999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 90 i~v~d~~~~~ 99 (206)
T 2bov_A 90 LCVFSITEME 99 (206)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999753
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.88 E-value=1e-22 Score=126.06 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=71.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||+++|.++.+.. +.||.+ +.+.+.+.+++..+.+.+||++|+++ ..+++++|++++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 46899999999999999999999999886 778887 44567888899999999999999986 578899999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 79 v~D~~~~~ 86 (178)
T 2iwr_A 79 VFSLEDEN 86 (178)
T ss_dssp EEETTCHH
T ss_pred EEECcCHH
Confidence 99999864
No 67
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=9.6e-23 Score=130.68 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=73.0
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCC--ccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh-hccchHhhcc
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGD--FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-FRTITQSYYR 92 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~~~~~ 92 (108)
......+||+|+|++|||||||+++|.+.. +...+ ++++.+++.+.+.+++..+.+.+||++|++. +..+.+.|++
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 345567999999999999999999999643 34433 4566778888889999999999999999887 5667788899
Q ss_pred cCcEEEEEEeccccC
Q psy5771 93 SANGVIIGEILCFYG 107 (108)
Q Consensus 93 ~~~~~i~v~dit~~~ 107 (108)
.++++|+|||+++..
T Consensus 111 ~a~~~ilVydvt~~~ 125 (211)
T 2g3y_A 111 VGDAYLIVYSITDRA 125 (211)
T ss_dssp CCSEEEEEEETTCHH
T ss_pred hCCEEEEEEECCCHH
Confidence 999999999999864
No 68
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.88 E-value=3.3e-22 Score=126.32 Aligned_cols=88 Identities=50% Similarity=0.894 Sum_probs=79.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
+..+||+++|++|||||||++++.+..+...+.|+.+.++....+.++++.+.+.+||++|++++..++..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56799999999999999999999999998888899988888889999999999999999999999999999999999999
Q ss_pred EEEecccc
Q psy5771 99 IGEILCFY 106 (108)
Q Consensus 99 ~v~dit~~ 106 (108)
+|||+++.
T Consensus 83 ~v~d~~~~ 90 (199)
T 2f9l_A 83 LVYDIAKH 90 (199)
T ss_dssp EEEETTCH
T ss_pred EEEECcCH
Confidence 99999875
No 69
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=1.8e-22 Score=128.12 Aligned_cols=89 Identities=30% Similarity=0.438 Sum_probs=76.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
....+||+++|++|||||||+++|..+.+...+.++.+ +.....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35679999999999999999999999999888888886 45566778888899999999999999999999999999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 106 i~v~d~~~~~ 115 (204)
T 4gzl_A 106 LICFSLVSPA 115 (204)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999754
No 70
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.88 E-value=2.2e-22 Score=122.75 Aligned_cols=86 Identities=35% Similarity=0.566 Sum_probs=77.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||++++.++.+...+.++.+. .....+.+++..+.+.+||++|++++..++..+++.++++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999988888888874 4467788899999999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 82 ~d~~~~~ 88 (167)
T 1kao_A 82 YSLVNQQ 88 (167)
T ss_dssp EETTCHH
T ss_pred EeCCCHH
Confidence 9998753
No 71
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.88 E-value=3.4e-22 Score=124.41 Aligned_cols=86 Identities=33% Similarity=0.490 Sum_probs=75.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 568999999999999999999999998888888885 5556777889999999999999999999999999999999999
Q ss_pred EEecccc
Q psy5771 100 GEILCFY 106 (108)
Q Consensus 100 v~dit~~ 106 (108)
|||+++.
T Consensus 82 v~d~~~~ 88 (189)
T 4dsu_A 82 VFAINNT 88 (189)
T ss_dssp EEETTCH
T ss_pred EEECCCH
Confidence 9999875
No 72
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.7e-22 Score=127.39 Aligned_cols=88 Identities=28% Similarity=0.486 Sum_probs=72.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45789999999999999999999999998888888876554 45778888999999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 102 ~v~d~~~~~ 110 (207)
T 2fv8_A 102 MCFSVDSPD 110 (207)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999999753
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=1.7e-23 Score=132.18 Aligned_cols=89 Identities=25% Similarity=0.398 Sum_probs=52.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--CccccccCceeeeeEEEEEEECCe--EEEEEEeeCCChhhhccchHhhcccC
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNIDGK--KVKLQIWDTAGQERFRTITQSYYRSA 94 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~l~l~D~~g~~~~~~~~~~~~~~~ 94 (108)
...+||+++|++|||||||+++|.++ .+...+.+|.+.++....+.+++. .+.+.+||++|++++..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999998 888888899988888888898887 89999999999999999999999999
Q ss_pred cEEEEEEeccccC
Q psy5771 95 NGVIIGEILCFYG 107 (108)
Q Consensus 95 ~~~i~v~dit~~~ 107 (108)
|++++|||+++..
T Consensus 98 d~~i~v~d~~~~~ 110 (208)
T 2yc2_C 98 YYAILVFDVSSME 110 (208)
T ss_dssp CEEEEEEETTCHH
T ss_pred cEEEEEEECCCHH
Confidence 9999999998753
No 74
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.88 E-value=3e-22 Score=122.22 Aligned_cols=86 Identities=35% Similarity=0.584 Sum_probs=74.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999998888888887544 45677888889999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 83 ~d~~~~~ 89 (168)
T 1u8z_A 83 FSITEME 89 (168)
T ss_dssp EETTCHH
T ss_pred EECCCHH
Confidence 9999753
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.8e-22 Score=125.95 Aligned_cols=88 Identities=26% Similarity=0.357 Sum_probs=77.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
....+||+++|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34568999999999999999999999998888888887444 45667788889999999999999999999999999999
Q ss_pred EEEEecccc
Q psy5771 98 IIGEILCFY 106 (108)
Q Consensus 98 i~v~dit~~ 106 (108)
++|||+++.
T Consensus 84 i~v~d~~~~ 92 (199)
T 2gf0_A 84 ILVFSVTSK 92 (199)
T ss_dssp EEEEETTCH
T ss_pred EEEEECcCH
Confidence 999999875
No 76
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.88 E-value=1.8e-22 Score=123.84 Aligned_cols=87 Identities=20% Similarity=0.245 Sum_probs=63.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc-chHhhcccCcEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT-ITQSYYRSANGVII 99 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-~~~~~~~~~~~~i~ 99 (108)
.+||+++|++|||||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|++++.. +++.+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998877666666666778888889999999999999999999876 78888999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 82 v~d~~~~~ 89 (169)
T 3q85_A 82 VFSVTDRR 89 (169)
T ss_dssp EEETTCHH
T ss_pred EEECCChH
Confidence 99999854
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.88 E-value=6.2e-22 Score=123.78 Aligned_cols=88 Identities=31% Similarity=0.440 Sum_probs=67.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~ 97 (108)
....+||+++|++|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+||++|++++..++..+++.++++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 3466999999999999999999999998888788887644 456778888889999999999999999999999999999
Q ss_pred EEEEecccc
Q psy5771 98 IIGEILCFY 106 (108)
Q Consensus 98 i~v~dit~~ 106 (108)
++|||+++.
T Consensus 97 i~v~d~~~~ 105 (190)
T 3con_A 97 LCVFAINNS 105 (190)
T ss_dssp EEEEETTCH
T ss_pred EEEEECcCH
Confidence 999999875
No 78
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=123.16 Aligned_cols=87 Identities=28% Similarity=0.378 Sum_probs=68.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh--hccchHhhcccCcEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--FRTITQSYYRSANGV 97 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--~~~~~~~~~~~~~~~ 97 (108)
..+||+++|++|||||||+++|.++.+... .++.+.++....+.+++..+.+.+||++|++. +..+...+++.++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 468999999999999999999999887654 35666777788888999999999999999988 567778899999999
Q ss_pred EEEEeccccC
Q psy5771 98 IIGEILCFYG 107 (108)
Q Consensus 98 i~v~dit~~~ 107 (108)
++|||+++..
T Consensus 82 i~v~d~~~~~ 91 (175)
T 2nzj_A 82 VIVYSIADRG 91 (175)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999754
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.87 E-value=3.5e-23 Score=128.34 Aligned_cols=88 Identities=33% Similarity=0.518 Sum_probs=62.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++..+.+...+.||.+..+ ...+.+++..+.+++||++|++++..++..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 3458999999999999999999999998888888887444 334556777888999999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 85 ~v~d~~~~~ 93 (182)
T 3bwd_D 85 LAFSLISKA 93 (182)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999998753
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.87 E-value=8.9e-23 Score=127.75 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=75.0
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCcccc-----------ccCceeeeeEEEEE-EECCeEEEEEEeeCCChhh
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK-----------TGNTIGVDFSMKTV-NIDGKKVKLQIWDTAGQER 82 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~l~l~D~~g~~~ 82 (108)
....+..+||+++|++|||||||++ ++.+.+... +.||.+.++....+ .+++..+.+.+||++|+++
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 3455778999999999999999995 555555554 34677777766655 6678889999999999999
Q ss_pred hccchHhhcccCcEEEEEEeccc
Q psy5771 83 FRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+..+++.+++.+|++|+|||+++
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~ 109 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAP 109 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCG
T ss_pred HHHHHHHHHhcCCEEEEEEECCc
Confidence 99999999999999999999983
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=7.1e-22 Score=121.11 Aligned_cols=86 Identities=26% Similarity=0.373 Sum_probs=76.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 58999999999999999999999998877888887544 45667788889999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 82 ~d~~~~~ 88 (172)
T 2erx_A 82 YSITSRQ 88 (172)
T ss_dssp EETTCHH
T ss_pred EECcCHH
Confidence 9998753
No 82
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=6.1e-22 Score=124.65 Aligned_cols=87 Identities=28% Similarity=0.404 Sum_probs=76.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++. ..++..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4568999999999999999999999999888889988554 56678888899999999999988 778899999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 104 lv~D~~~~~ 112 (196)
T 2atv_A 104 LVYDITDRG 112 (196)
T ss_dssp EEEETTCHH
T ss_pred EEEECcCHH
Confidence 999999853
No 83
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=8.2e-22 Score=123.15 Aligned_cols=85 Identities=27% Similarity=0.428 Sum_probs=70.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++.++++. .+.||.+ +....+.+++ +.+.+||++|++++..++..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 34689999999999999999999998887 6778887 4445666665 67899999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||+++..|
T Consensus 89 ~v~d~~~~~s 98 (187)
T 1zj6_A 89 VVVDSTDRER 98 (187)
T ss_dssp EEEETTCTTT
T ss_pred EEEeCCCHHH
Confidence 9999998754
No 84
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.87 E-value=2.7e-22 Score=125.32 Aligned_cols=86 Identities=21% Similarity=0.367 Sum_probs=64.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC--CccccccCceeeeeEEEEEEE---CCeEEEEEEeeCCChhhhccchHhhcccCc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNI---DGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~ 95 (108)
.+||+++|++|||||||+++|.+. .+...+.+|++.++....+.+ ++..+.+.+||++|+++|..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 566667889988877665554 345778999999999999999999999999
Q ss_pred EEEEEEecccc
Q psy5771 96 GVIIGEILCFY 106 (108)
Q Consensus 96 ~~i~v~dit~~ 106 (108)
++++|||+++.
T Consensus 82 ~~i~v~d~~~~ 92 (184)
T 2zej_A 82 LYLAVYDLSKG 92 (184)
T ss_dssp EEEEEEEGGGC
T ss_pred EEEEEEeCCcc
Confidence 99999999975
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.87 E-value=2.3e-21 Score=118.99 Aligned_cols=84 Identities=31% Similarity=0.540 Sum_probs=72.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||++++.++.+.. +.||.+ +....+.+++ +.+.+||++|++.+..++..+++.+|++++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 45899999999999999999999998864 678887 4445666664 678999999999999999999999999999
Q ss_pred EEeccccCC
Q psy5771 100 GEILCFYGT 108 (108)
Q Consensus 100 v~dit~~~s 108 (108)
|||+++..|
T Consensus 81 v~d~~~~~s 89 (171)
T 1upt_A 81 VVDSCDRDR 89 (171)
T ss_dssp EEETTCCTT
T ss_pred EEECCCHHH
Confidence 999998653
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.86 E-value=2.2e-21 Score=121.86 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=72.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++.++.+. .+.||.+. ....+.+++ +.+.+||++|+++++.+++.+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 34579999999999999999999998876 46788874 456777776 77899999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||+++..|
T Consensus 96 ~v~d~~~~~s 105 (190)
T 1m2o_B 96 FLVDAADPER 105 (190)
T ss_dssp EEEETTCGGG
T ss_pred EEEECCChHH
Confidence 9999998753
No 87
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.86 E-value=2.9e-22 Score=127.84 Aligned_cols=93 Identities=33% Similarity=0.495 Sum_probs=77.3
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC-CeEEEEEEeeCCChhhhccchHhhccc
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRS 93 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~ 93 (108)
+......+||+++|++|||||||+++|.++.+...+.++.+.......+... +..+.+.+||++|++.+..++..+++.
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 3455678999999999999999999999999888888888876666555543 445889999999999999999999999
Q ss_pred CcEEEEEEeccccC
Q psy5771 94 ANGVIIGEILCFYG 107 (108)
Q Consensus 94 ~~~~i~v~dit~~~ 107 (108)
+|++|+|||+++..
T Consensus 85 ~d~~i~v~d~~~~~ 98 (218)
T 4djt_A 85 ASGAILFFDVTSRI 98 (218)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CCEEEEEEeCCCHH
Confidence 99999999999753
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.86 E-value=2.1e-21 Score=120.98 Aligned_cols=85 Identities=29% Similarity=0.553 Sum_probs=73.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++.++. ...+.||.+ +....+.+++ +.+.+||++|++++..++..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456899999999999999999999888 667888888 4455666654 67899999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||+++..|
T Consensus 91 ~v~d~~~~~s 100 (186)
T 1ksh_A 91 WVVDSADRQR 100 (186)
T ss_dssp EEEETTCGGG
T ss_pred EEEECcCHHH
Confidence 9999998653
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.86 E-value=6.9e-22 Score=123.30 Aligned_cols=84 Identities=29% Similarity=0.458 Sum_probs=72.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++.++.+. .+.||.+ +....+.+++ +.+.+||++|++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999988764 4678887 4455666664 67899999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 89 ~v~d~~~~~ 97 (181)
T 1fzq_A 89 YVIDSADRK 97 (181)
T ss_dssp EEEETTCGG
T ss_pred EEEECcCHH
Confidence 999999864
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.86 E-value=9.6e-22 Score=124.34 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=64.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||++++.++.+. .+.||.+.. ...+.+++ +.+.+||++|+++++.+++.+++++|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999998875 477888744 45677776 679999999999999999999999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 99 v~D~~~~~ 106 (198)
T 1f6b_A 99 LVDCADHE 106 (198)
T ss_dssp EEETTCGG
T ss_pred EEECCCHH
Confidence 99999864
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.86 E-value=1e-21 Score=119.96 Aligned_cols=82 Identities=26% Similarity=0.551 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEE
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGE 101 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 101 (108)
+||+++|++|||||||++++.++.+.. +.||.+ +....+..+ .+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988865 678887 444455554 467899999999999999999999999999999
Q ss_pred eccccCC
Q psy5771 102 ILCFYGT 108 (108)
Q Consensus 102 dit~~~s 108 (108)
|+++..|
T Consensus 76 d~~~~~s 82 (164)
T 1r8s_A 76 DSNDRER 82 (164)
T ss_dssp ETTCGGG
T ss_pred ECCCHHH
Confidence 9998643
No 92
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.86 E-value=2.2e-21 Score=117.99 Aligned_cols=85 Identities=32% Similarity=0.497 Sum_probs=76.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||++++.++.+...+.++.+.. ....+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 4799999999999999999999999888788888643 456777888899999999999999999999999999999999
Q ss_pred Eecccc
Q psy5771 101 EILCFY 106 (108)
Q Consensus 101 ~dit~~ 106 (108)
||+++.
T Consensus 82 ~d~~~~ 87 (166)
T 2ce2_X 82 FAINNT 87 (166)
T ss_dssp EETTCH
T ss_pred EECCCH
Confidence 999875
No 93
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=1.2e-21 Score=119.91 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=53.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
.+||+++|++|||||||++++.+..+.. ..++.+.++ ...+.+++..+.+.+||++|++.+..+++.+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 4799999999999999999999776543 446666444 56778899999999999999999999999999999999999
Q ss_pred EeccccC
Q psy5771 101 EILCFYG 107 (108)
Q Consensus 101 ~dit~~~ 107 (108)
||+++..
T Consensus 80 ~d~~~~~ 86 (166)
T 3q72_A 80 YSVTDKG 86 (166)
T ss_dssp EETTCHH
T ss_pred EECCCHH
Confidence 9999753
No 94
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.86 E-value=1.7e-21 Score=122.78 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=69.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC--CccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh-hccchHhhcccCcE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-FRTITQSYYRSANG 96 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-~~~~~~~~~~~~~~ 96 (108)
..+||+++|++|||||||+++|.+. .+...+ ++.+.++..+.+.+++..+.+.+||++|++. +..+++.+++.+++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4689999999999999999999963 344433 4466677778888999999999999999876 56678889999999
Q ss_pred EEEEEeccccC
Q psy5771 97 VIIGEILCFYG 107 (108)
Q Consensus 97 ~i~v~dit~~~ 107 (108)
+++|||+++..
T Consensus 84 ~i~v~dv~~~~ 94 (192)
T 2cjw_A 84 YLIVYSITDRA 94 (192)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECCCHH
Confidence 99999999864
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=2.5e-21 Score=121.83 Aligned_cols=84 Identities=25% Similarity=0.508 Sum_probs=67.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++..+++.. +.||.+ +....+..++ +.+.+||++|++++..+++.+++.+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 456899999999999999999999988864 567877 4455566654 67899999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 102 lv~D~~~~~ 110 (192)
T 2b6h_A 102 FVVDSNDRE 110 (192)
T ss_dssp EEEETTCGG
T ss_pred EEEECCCHH
Confidence 999999864
No 96
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.85 E-value=3.4e-21 Score=122.58 Aligned_cols=86 Identities=19% Similarity=0.306 Sum_probs=69.7
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCe-EEEEEEeeCCChhhhcc-chHhhcccCc
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK-KVKLQIWDTAGQERFRT-ITQSYYRSAN 95 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~D~~g~~~~~~-~~~~~~~~~~ 95 (108)
....+||+++|++|||||||+++|.++.+...+.++. .++.. +.+++. .+.+.+||++|++++.. +++.|++.++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 3456899999999999999999999999887775544 34433 566644 57899999999999987 8899999999
Q ss_pred EEEEEEecccc
Q psy5771 96 GVIIGEILCFY 106 (108)
Q Consensus 96 ~~i~v~dit~~ 106 (108)
++++|||+++.
T Consensus 81 ~~i~v~d~~~~ 91 (214)
T 2fh5_B 81 AVVFVVDSAAF 91 (214)
T ss_dssp EEEEEEETTTH
T ss_pred EEEEEEECCCc
Confidence 99999999873
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=2.7e-21 Score=119.99 Aligned_cols=85 Identities=28% Similarity=0.491 Sum_probs=69.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++.++++ ..+.||.+ +....+.+++ +.+.+||++|++++..++..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4568999999999999999999998887 55778887 4445666665 67899999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||+++..|
T Consensus 91 ~v~d~~~~~s 100 (183)
T 1moz_A 91 FVVDSTDKDR 100 (183)
T ss_dssp EEEETTCTTT
T ss_pred EEEECCCHHH
Confidence 9999998653
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=2.5e-21 Score=122.01 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=65.3
Q ss_pred CCCCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEE--EEC-CeEEEEEEeeCCChhhhccch--
Q psy5771 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTV--NID-GKKVKLQIWDTAGQERFRTIT-- 87 (108)
Q Consensus 13 ~~~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~--~~~-~~~~~l~l~D~~g~~~~~~~~-- 87 (108)
.+.......+||+++|++|||||||++++.+. +... ++.+.++....+ .+. +..+.+++||++|+++|....
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 88 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD 88 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence 34455667899999999999999999987764 4333 444444433333 332 566889999999999988776
Q ss_pred -HhhcccCcEEEEEEecccc
Q psy5771 88 -QSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 88 -~~~~~~~~~~i~v~dit~~ 106 (108)
+.+++++|++|+|||+++.
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDD 108 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSC
T ss_pred cccccccCCEEEEEEECCCc
Confidence 8999999999999999974
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.84 E-value=1.7e-20 Score=125.89 Aligned_cols=87 Identities=31% Similarity=0.460 Sum_probs=78.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
..+||+++|++|||||||++++.++.+...+.+|.+.. ....+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 45899999999999999999999999988888888744 45677889999999999999999999999999999999999
Q ss_pred EEeccccC
Q psy5771 100 GEILCFYG 107 (108)
Q Consensus 100 v~dit~~~ 107 (108)
|||+++..
T Consensus 233 v~d~~~~~ 240 (332)
T 2wkq_A 233 CFSLVSPA 240 (332)
T ss_dssp EEETTCHH
T ss_pred EEeCCCHH
Confidence 99999753
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.84 E-value=4.3e-21 Score=119.96 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=72.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||++++..+++.. +.||.+ +....+.+++ +.+.+||++|++++..+++.+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 346899999999999999999999888764 668887 4455666654 67899999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||+++..|
T Consensus 95 ~v~d~~~~~s 104 (189)
T 2x77_A 95 YVVDSTDRDR 104 (189)
T ss_dssp EEEETTCCTT
T ss_pred EEEeCCCHHH
Confidence 9999998653
No 101
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.84 E-value=6.9e-21 Score=117.58 Aligned_cols=85 Identities=22% Similarity=0.271 Sum_probs=74.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++.. +.+||++|++++..++..+++.+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 456799999999999999999999999887777777666666677777754 679999999999999999999999999
Q ss_pred EEEeccc
Q psy5771 99 IGEILCF 105 (108)
Q Consensus 99 ~v~dit~ 105 (108)
+|||+++
T Consensus 84 ~v~d~~~ 90 (178)
T 2lkc_A 84 LVVAADD 90 (178)
T ss_dssp EEEETTC
T ss_pred EEEECCC
Confidence 9999987
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.4e-22 Score=128.34 Aligned_cols=89 Identities=30% Similarity=0.457 Sum_probs=78.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|++|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 467999999999999999999999999888888888643 3556677788889999999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||+++..|
T Consensus 107 lv~D~~~~~s 116 (204)
T 3th5_A 107 ICFSLVSPAS 116 (204)
Confidence 9999998653
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.83 E-value=3.3e-21 Score=130.30 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccc---cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc---chHhhcccCcE
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVE---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT---ITQSYYRSANG 96 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~---~~~~~~~~~~~ 96 (108)
||+++|++|||||||++++.++.++. .+.||++.++.. + + ..+++++|||+||++|.. +++.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999988765443 256888876653 2 3 358899999999999974 46899999999
Q ss_pred EEEEEecccc
Q psy5771 97 VIIGEILCFY 106 (108)
Q Consensus 97 ~i~v~dit~~ 106 (108)
+|+|||+|+.
T Consensus 76 ~IlV~Ditd~ 85 (331)
T 3r7w_B 76 LVYVIDSQDE 85 (331)
T ss_dssp EEEECCCSSC
T ss_pred EEEEEECCch
Confidence 9999999975
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.82 E-value=5.1e-20 Score=123.66 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=70.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC--Ccc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh-----ccchHhhc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG--DFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF-----RTITQSYY 91 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~--~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-----~~~~~~~~ 91 (108)
..+||+++|++|||||||++++.++ .+. ..+.+|++.++. .+.+++ .+.+.+||++|++++ ..+++.++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4589999999999999999999987 332 246678875554 444544 578999999999998 78899999
Q ss_pred ccCcEEEEEEeccccC
Q psy5771 92 RSANGVIIGEILCFYG 107 (108)
Q Consensus 92 ~~~~~~i~v~dit~~~ 107 (108)
+++|++|+|||+++..
T Consensus 79 ~~ad~vi~V~D~t~~~ 94 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTE 94 (307)
T ss_dssp TTCSEEEEEEETTCSC
T ss_pred ccCCEEEEEEECCChh
Confidence 9999999999999865
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=124.80 Aligned_cols=85 Identities=22% Similarity=0.471 Sum_probs=66.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+|+|+++||||||+++|.++.+... .||.+..+ ..+...+ +.+.|||++|++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999988654 47777443 3455544 67999999999999999999999999999
Q ss_pred EEEeccccCC
Q psy5771 99 IGEILCFYGT 108 (108)
Q Consensus 99 ~v~dit~~~s 108 (108)
+|||+++..|
T Consensus 238 lV~D~~~~~s 247 (329)
T 3o47_A 238 FVVDSNDRER 247 (329)
T ss_dssp EEEETTCSSS
T ss_pred EEEECCchHH
Confidence 9999998654
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.7e-21 Score=126.20 Aligned_cols=94 Identities=20% Similarity=0.385 Sum_probs=69.9
Q ss_pred CCCCCCCeeeEEEEEcCC---------CCCHHHHHHHHHc---CCccccccCce-eeeeEEEEEE--------------E
Q psy5771 13 FQDDSYDFLFKVVLIGDC---------GVGKTCVVHRFRS---GDFVEKTGNTI-GVDFSMKTVN--------------I 65 (108)
Q Consensus 13 ~~~~~~~~~~ki~lvG~~---------~vGKtsli~~~~~---~~~~~~~~~t~-~~~~~~~~~~--------------~ 65 (108)
.........+||+|+|++ |||||||+++|.+ +.+...+.|+. +.++..+.+. +
T Consensus 11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (255)
T 3c5h_A 11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE 90 (255)
T ss_dssp CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence 334456677999999999 9999999999999 66766677765 4444433222 4
Q ss_pred CCeEEEEEEee-----------------------CCChhhhccchHhhcc---------------------cCcEEEEEE
Q psy5771 66 DGKKVKLQIWD-----------------------TAGQERFRTITQSYYR---------------------SANGVIIGE 101 (108)
Q Consensus 66 ~~~~~~l~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~ 101 (108)
++..+.+++|| ++|+++|..+++.+++ ++|++|+||
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 56788999999 7788888888888888 899999999
Q ss_pred ecccc
Q psy5771 102 ILCFY 106 (108)
Q Consensus 102 dit~~ 106 (108)
|+++.
T Consensus 171 D~t~~ 175 (255)
T 3c5h_A 171 DVSRG 175 (255)
T ss_dssp ECBC-
T ss_pred ECCCC
Confidence 99986
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=2.2e-19 Score=126.90 Aligned_cols=84 Identities=26% Similarity=0.498 Sum_probs=72.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i 98 (108)
...+||+++|.++||||||+++|.++++.. +.||.+..+ ..+.+++ +.+.+|||+|++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999998664 568887443 4455544 67899999999999999999999999999
Q ss_pred EEEeccccC
Q psy5771 99 IGEILCFYG 107 (108)
Q Consensus 99 ~v~dit~~~ 107 (108)
+|||+++..
T Consensus 395 ~V~D~~~~~ 403 (497)
T 3lvq_E 395 FVVDCADRD 403 (497)
T ss_dssp EEEETTCGG
T ss_pred EEEECcchh
Confidence 999999864
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.79 E-value=6e-19 Score=108.38 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=64.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc------cchHhhcc--
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR------TITQSYYR-- 92 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~-- 92 (108)
.+||+++|++|||||||+++|.+..+.....|+.+.+.....+.+++ ..+.+||++|++++. .+.+.|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998876555556555556666677766 468999999998775 34466775
Q ss_pred cCcEEEEEEecccc
Q psy5771 93 SANGVIIGEILCFY 106 (108)
Q Consensus 93 ~~~~~i~v~dit~~ 106 (108)
+++++++|+|+++.
T Consensus 81 ~~~~~i~v~D~~~~ 94 (165)
T 2wji_A 81 KPDLVVNIVDATAL 94 (165)
T ss_dssp CCSEEEEEEETTCH
T ss_pred CCCEEEEEecCCch
Confidence 89999999999863
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.78 E-value=4.7e-19 Score=110.92 Aligned_cols=86 Identities=19% Similarity=0.263 Sum_probs=61.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC----------hhhhccch
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG----------QERFRTIT 87 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~ 87 (108)
....+||+++|++|||||||++++.++.+...+.++.+.+........++ .+.+||++| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34578999999999999999999999987666667766555444445544 489999999 88888888
Q ss_pred HhhcccC---cEEEEEEecccc
Q psy5771 88 QSYYRSA---NGVIIGEILCFY 106 (108)
Q Consensus 88 ~~~~~~~---~~~i~v~dit~~ 106 (108)
..+++.+ +++++|+|+++.
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~ 118 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHA 118 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHhhhhcCCEEEEEEECCCC
Confidence 9998888 999999999875
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=3.4e-18 Score=106.44 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=68.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc------cchHhhcc-
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR------TITQSYYR- 92 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~- 92 (108)
..+||+++|++|||||||+++|.+..+.....|+...+.....+.+++ ..+.+||++|++.+. .++..+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999998876655567666666677777766 568999999998875 35666775
Q ss_pred -cCcEEEEEEecccc
Q psy5771 93 -SANGVIIGEILCFY 106 (108)
Q Consensus 93 -~~~~~i~v~dit~~ 106 (108)
.++++++|+|.++.
T Consensus 84 ~~~~~~i~v~d~~~~ 98 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL 98 (188)
T ss_dssp HCCSEEEEEEEGGGH
T ss_pred cCCCEEEEEecchhH
Confidence 49999999999863
No 111
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=2e-19 Score=114.61 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=65.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccc---cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc-
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS- 93 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~- 93 (108)
....+||+++|++|||||||++++.++.+.. .+.|+.+.++ ..+.+.+||++|++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4556899999999999999999999988754 2445554333 34568999999999999999999887
Q ss_pred ---CcEEEEEEecc-ccC
Q psy5771 94 ---ANGVIIGEILC-FYG 107 (108)
Q Consensus 94 ---~~~~i~v~dit-~~~ 107 (108)
++++++|||++ +..
T Consensus 80 ~~~~~~~i~v~D~~~~~~ 97 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPK 97 (218)
T ss_dssp GGGEEEEEEEEETTSCTT
T ss_pred cccCCEEEEEEECCCChH
Confidence 89999999999 544
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=3.4e-18 Score=103.82 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh-------hccchHhhccc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-------FRTITQSYYRS 93 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~~~~ 93 (108)
.||+++|++|||||||++++.++.+. ....+....+.....+..++. .+.+||++|++. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988753 122334434566666777765 578999999887 34556678999
Q ss_pred CcEEEEEEecccc
Q psy5771 94 ANGVIIGEILCFY 106 (108)
Q Consensus 94 ~~~~i~v~dit~~ 106 (108)
+|++++|||+++.
T Consensus 80 ~~~~i~v~d~~~~ 92 (161)
T 2dyk_A 80 AEVVLFAVDGRAE 92 (161)
T ss_dssp CSEEEEEEESSSC
T ss_pred CCEEEEEEECCCc
Confidence 9999999999874
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.77 E-value=3.8e-18 Score=109.74 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=60.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh------hh----hccchH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ------ER----FRTITQ 88 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~------~~----~~~~~~ 88 (108)
...+||+|+|++|||||||+++|+++.+.....+....+.....+..++ ..+.+||++|+ +. +.. +.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 4578999999999999999999999887533323222234444444444 56899999998 33 222 24
Q ss_pred hhcccCcEEEEEEeccccC
Q psy5771 89 SYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~~~ 107 (108)
.+++.+|++|+|||+++..
T Consensus 104 ~~~~~~d~~i~v~d~~~~~ 122 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQC 122 (228)
T ss_dssp HHHTSSEEEEEEEETTCTT
T ss_pred HhhccccEEEEEEeccccc
Confidence 4578899999999999864
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.76 E-value=8.4e-18 Score=104.08 Aligned_cols=86 Identities=21% Similarity=0.170 Sum_probs=64.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc--------hHhhc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQSYY 91 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~--------~~~~~ 91 (108)
.+||+++|++|||||||++++.+..+.. ...+....++....+.+++.. +.+||++|++++... ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 4799999999999999999999876421 222333455667778888754 789999998653211 12468
Q ss_pred ccCcEEEEEEeccccCC
Q psy5771 92 RSANGVIIGEILCFYGT 108 (108)
Q Consensus 92 ~~~~~~i~v~dit~~~s 108 (108)
+.+|++++|||+++..|
T Consensus 82 ~~ad~~i~v~D~~~~~s 98 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDA 98 (172)
T ss_dssp HTCSEEEEEEETTTCCC
T ss_pred HhCCEEEEEEECCCCCC
Confidence 99999999999998654
No 115
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=108.54 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=63.7
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccC--ceeeeeEEEEEEECCeEEEEEEeeCCC-----------hh
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGN--TIGVDFSMKTVNIDGKKVKLQIWDTAG-----------QE 81 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~l~D~~g-----------~~ 81 (108)
.......+||+|+|.+|||||||++++++..+.....+ +...+.....+.+++. .+.+|||+| .+
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~ 100 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSK 100 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHH
Confidence 33445679999999999999999999999887655444 3334455556666664 578999999 34
Q ss_pred hhccchHhhcccCcEEEEEEecccc
Q psy5771 82 RFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
.+......+++++|++|+|+|++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~ 125 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRY 125 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCC
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCC
Confidence 5556666677889999999998753
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.75 E-value=6.4e-19 Score=125.72 Aligned_cols=90 Identities=23% Similarity=0.241 Sum_probs=66.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEE------EEE--CCeEEEEEEeeCCChhhhccchH
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKT------VNI--DGKKVKLQIWDTAGQERFRTITQ 88 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~------~~~--~~~~~~l~l~D~~g~~~~~~~~~ 88 (108)
.....+||+++|++|||||||++++.++.+...+.||++.++.... +.+ ++..+.+.+||++|++.+..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3556799999999999999999999999998888899997776542 122 33457899999999999999999
Q ss_pred hhcccCcEEEEEEecccc
Q psy5771 89 SYYRSANGVIIGEILCFY 106 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~~ 106 (108)
.+++.++++|+|||+++.
T Consensus 117 ~~l~~~d~ii~V~D~s~~ 134 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD 134 (535)
T ss_dssp HHHHSSEEEEEEECGGGG
T ss_pred HHccCCcEEEEEEeCCCc
Confidence 999999999999999864
No 117
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.7e-19 Score=111.36 Aligned_cols=77 Identities=14% Similarity=0.259 Sum_probs=59.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccc---cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhccc--
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS-- 93 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~-- 93 (108)
...++|+++|++|||||||++++.+..+.. .+.++.+.++ ..+.+.+||++|++.+...+..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 456899999999999999999999987654 2233333221 34568899999999998888888876
Q ss_pred --CcEEEEEEecc
Q psy5771 94 --ANGVIIGEILC 104 (108)
Q Consensus 94 --~~~~i~v~dit 104 (108)
+|++++|||++
T Consensus 117 ~~~~~~i~v~d~~ 129 (193)
T 2ged_A 117 KFVKGLIFMVDST 129 (193)
T ss_dssp GGEEEEEEEEETT
T ss_pred ccCCEEEEEEECC
Confidence 89999999998
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.72 E-value=2.1e-18 Score=107.31 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC-----------hhhhccchHhh
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG-----------QERFRTITQSY 90 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g-----------~~~~~~~~~~~ 90 (108)
+||+++|++|||||||++++.++.+...+.|+.. .....+.++ .+.+||++| ++.+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc--ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999988777767654 333444444 588999999 78888888889
Q ss_pred ccc-CcEEEEEEeccccC
Q psy5771 91 YRS-ANGVIIGEILCFYG 107 (108)
Q Consensus 91 ~~~-~~~~i~v~dit~~~ 107 (108)
++. ++++++||++++..
T Consensus 76 ~~~~~~~~~~v~~v~d~~ 93 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGK 93 (190)
T ss_dssp HHHHGGGCCEEEEEEETT
T ss_pred HHhhhccCCEEEEEEcch
Confidence 988 88888888887754
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.72 E-value=5e-17 Score=106.83 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=66.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc------hHhhc-
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI------TQSYY- 91 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------~~~~~- 91 (108)
...+||+++|++|||||||+++|.+..+.....|....+.....+..++ ..+.+||++|+..+... .+.|+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4568999999999999999999998876544445554455555555544 57899999999877653 35666
Q ss_pred -ccCcEEEEEEecccc
Q psy5771 92 -RSANGVIIGEILCFY 106 (108)
Q Consensus 92 -~~~~~~i~v~dit~~ 106 (108)
..+|++++|+|.++.
T Consensus 81 ~~~~d~ii~V~D~t~~ 96 (258)
T 3a1s_A 81 KGDADLVILVADSVNP 96 (258)
T ss_dssp HSCCSEEEEEEETTSC
T ss_pred hcCCCEEEEEeCCCch
Confidence 589999999999874
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.72 E-value=5.1e-17 Score=107.20 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=69.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc------chHhhc--c
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT------ITQSYY--R 92 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~------~~~~~~--~ 92 (108)
.+||+++|++|||||||++++.+..+.....|+.+.+.....+.+++.. +.+||+||+..+.. +.+.|+ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 4799999999999999999999988765566777767777777777754 88999999988766 566676 6
Q ss_pred cCcEEEEEEecccc
Q psy5771 93 SANGVIIGEILCFY 106 (108)
Q Consensus 93 ~~~~~i~v~dit~~ 106 (108)
.+|++++|+|.++.
T Consensus 81 ~~d~vi~v~D~~~~ 94 (271)
T 3k53_A 81 NADVIVDIVDSTCL 94 (271)
T ss_dssp CCSEEEEEEEGGGH
T ss_pred CCcEEEEEecCCcc
Confidence 89999999999873
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.72 E-value=4.7e-17 Score=106.90 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc----------chHhhc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT----------ITQSYY 91 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----------~~~~~~ 91 (108)
.+|+++|.+|||||||++++.+..+.....|....+.....+.+++. .+.+||+||...+.. +.+.|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988765555566666677777787775 688999999987653 556677
Q ss_pred --ccCcEEEEEEecccc
Q psy5771 92 --RSANGVIIGEILCFY 106 (108)
Q Consensus 92 --~~~~~~i~v~dit~~ 106 (108)
+.+|++++|+|.++.
T Consensus 80 ~~~~~d~vi~VvDas~~ 96 (256)
T 3iby_A 80 IDLEYDCIINVIDACHL 96 (256)
T ss_dssp HHSCCSEEEEEEEGGGH
T ss_pred hhCCCCEEEEEeeCCCc
Confidence 899999999999874
No 122
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.71 E-value=1.1e-16 Score=104.73 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=63.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCC-ccccccCc-eeeeeEEEEEEECCeEEEEEEeeCCChhhhccc--------
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGD-FVEKTGNT-IGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI-------- 86 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-------- 86 (108)
.....++|+|+|.+|||||||++++++.. +...+.++ ...+.....+..++. .+.+|||||...+...
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHH
Confidence 34566899999999999999999999876 54444444 333455555666664 5889999998765432
Q ss_pred ---hHhhcccCcEEEEEEeccc
Q psy5771 87 ---TQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 87 ---~~~~~~~~~~~i~v~dit~ 105 (108)
...+++.+|++++|||++.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC
T ss_pred HHHHHhcCCCCcEEEEEEeCCC
Confidence 2236789999999999974
No 123
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.70 E-value=2.9e-17 Score=107.26 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=56.7
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceee--eeEEEEEEECCeEEEEEEeeCCCh--------hhhccc
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV--DFSMKTVNIDGKKVKLQIWDTAGQ--------ERFRTI 86 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~D~~g~--------~~~~~~ 86 (108)
.....+||+|+|.+|||||||++++++..+.....++.+. ......+..++ ..+.+|||||. +.+...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 3356799999999999999999999988764433222222 23334455555 45889999996 333333
Q ss_pred hHhhc----ccCcEEEEEEeccc
Q psy5771 87 TQSYY----RSANGVIIGEILCF 105 (108)
Q Consensus 87 ~~~~~----~~~~~~i~v~dit~ 105 (108)
...++ +.+|++|+|+|++.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTB
T ss_pred HHHHHHhcCCCCCEEEEEEeCCC
Confidence 33333 89999999999875
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.70 E-value=2.8e-17 Score=108.86 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=62.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc------cchHhhcc--
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR------TITQSYYR-- 92 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~------~~~~~~~~-- 92 (108)
.+||+++|++|||||||+++|.+........|.. ++......+.. ...+.+||++|++.+. .+.+.|++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 5799999999999999999999876433333432 33334444554 5678999999998875 45677776
Q ss_pred cCcEEEEEEecccc
Q psy5771 93 SANGVIIGEILCFY 106 (108)
Q Consensus 93 ~~~~~i~v~dit~~ 106 (108)
.+|++++|||+++.
T Consensus 80 ~~d~vi~V~D~t~~ 93 (272)
T 3b1v_A 80 RADSILNVVDATNL 93 (272)
T ss_dssp CCSEEEEEEEGGGH
T ss_pred CCCEEEEEecCCch
Confidence 59999999999874
No 125
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.70 E-value=1.2e-16 Score=99.68 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=65.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC----------hhhhccch
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG----------QERFRTIT 87 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~ 87 (108)
....+||+++|++|||||||+++|.++.+. .+.++.+.+........+. .+.+||++| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 345689999999999999999999988743 3556655444433333333 377999999 77888888
Q ss_pred HhhcccC---cEEEEEEecccc
Q psy5771 88 QSYYRSA---NGVIIGEILCFY 106 (108)
Q Consensus 88 ~~~~~~~---~~~i~v~dit~~ 106 (108)
+.+++.+ +++++|+|.++.
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~ 117 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIP 117 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHhcCcCceEEEEEecCCCC
Confidence 8888877 999999998753
No 126
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.68 E-value=1.9e-16 Score=104.85 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=65.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc----------chHhh
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT----------ITQSY 90 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~----------~~~~~ 90 (108)
.++|+++|.+|||||||++++.+..+.....|....+.....+...+. .+.+||++|+..+.. +...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 479999999999999999999988765555566555666666776654 477899999887662 23334
Q ss_pred c--ccCcEEEEEEecccc
Q psy5771 91 Y--RSANGVIIGEILCFY 106 (108)
Q Consensus 91 ~--~~~~~~i~v~dit~~ 106 (108)
+ +.+|++++|+|.++.
T Consensus 81 ~~~~~~d~ii~VvD~~~~ 98 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNL 98 (274)
T ss_dssp HHHTCCSEEEEEEEGGGH
T ss_pred HhhcCCCEEEEEecCCCh
Confidence 3 799999999999874
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.68 E-value=1.3e-16 Score=106.95 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=61.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChhh--------hccchHh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--------FRTITQS 89 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~~~~~ 89 (108)
-...+|+++|.+|||||||++++++.++.. ...|....+.....+..+ ..++.+|||+|..+ +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 345689999999999999999999887642 122211112222223333 46789999999875 4456667
Q ss_pred hcccCcEEEEEEecccc
Q psy5771 90 YYRSANGVIIGEILCFY 106 (108)
Q Consensus 90 ~~~~~~~~i~v~dit~~ 106 (108)
+++.+|++++|||+++.
T Consensus 83 ~l~~ad~il~VvD~~~~ 99 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHP 99 (301)
T ss_dssp HTSSCSEEEEEEETTSC
T ss_pred HHhcCCEEEEEEECCCC
Confidence 89999999999999864
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.67 E-value=3.7e-17 Score=104.33 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=62.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEEC-CeEEEEEEeeCCC----------hhhhccch
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAG----------QERFRTIT 87 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g----------~~~~~~~~ 87 (108)
...+||+|+|.+|||||||++++.++.+.....++.+.+.......+. .....+.+|||+| ++.+..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 456899999999999999999999887322233333322333333333 3345688999999 56667777
Q ss_pred Hhhccc---CcEEEEEEeccc
Q psy5771 88 QSYYRS---ANGVIIGEILCF 105 (108)
Q Consensus 88 ~~~~~~---~~~~i~v~dit~ 105 (108)
..|++. +|++++|+|.++
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~ 127 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARR 127 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTS
T ss_pred HHHHhcCcCcCEEEEEEeCCC
Confidence 778776 788999999985
No 129
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.67 E-value=6.5e-16 Score=101.49 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=62.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCc--cccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcc-----
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR----- 92 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~----- 92 (108)
..+||+++|.+|+|||||++++.+..+ ...+.++ ........+..++. .+.+|||+|++++....+.+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence 568999999999999999999998875 2222222 22344455566664 6899999999888766666554
Q ss_pred ----cCcEEEEEEeccc
Q psy5771 93 ----SANGVIIGEILCF 105 (108)
Q Consensus 93 ----~~~~~i~v~dit~ 105 (108)
.+|++++|+|++.
T Consensus 112 l~~~~~~~il~V~~~d~ 128 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDV 128 (262)
T ss_dssp TTTCEECEEEEEEESSC
T ss_pred HhcCCCCEEEEEEcCCC
Confidence 7899999999875
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=3e-16 Score=109.74 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh---------hccchHhhc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER---------FRTITQSYY 91 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~ 91 (108)
.+|+++|.+|||||||+++|.++... ....|....+.....+.+++.. +.+|||+|++. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 38999999999999999999987642 2233444455667777888765 68999999764 344567789
Q ss_pred ccCcEEEEEEeccc
Q psy5771 92 RSANGVIIGEILCF 105 (108)
Q Consensus 92 ~~~~~~i~v~dit~ 105 (108)
+.+|++++|+|+++
T Consensus 80 ~~ad~il~V~D~~~ 93 (439)
T 1mky_A 80 READLVLFVVDGKR 93 (439)
T ss_dssp TTCSEEEEEEETTT
T ss_pred HhCCEEEEEEECCC
Confidence 99999999999875
No 131
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.64 E-value=4.7e-16 Score=104.44 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=63.2
Q ss_pred CCCCeeeEEEEEcCCCCCHHHHHHHHHcCCcccc-ccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc----------
Q psy5771 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK-TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR---------- 84 (108)
Q Consensus 16 ~~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~---------- 84 (108)
+.++..-.|+++|.+|||||||++++++..+... ..+.............+ ...++.+|||+|+.++.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 3455667999999999999999999999876421 11211122223333443 14668899999985443
Q ss_pred cchHhhcccCcEEEEEEecccc
Q psy5771 85 TITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 85 ~~~~~~~~~~~~~i~v~dit~~ 106 (108)
.....+++.+|++++|+|+++.
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~ 105 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEG 105 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTB
T ss_pred HHHHHHhhcCCEEEEEEeCCCC
Confidence 5667789999999999999875
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.64 E-value=2.4e-16 Score=110.12 Aligned_cols=86 Identities=19% Similarity=0.149 Sum_probs=62.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCCh----------hhhccch
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRTIT 87 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~ 87 (108)
+..+||+++|++|||||||++++++.++. ....+....+.....+.+++.. +.+|||+|+ +.|..++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 45689999999999999999999988763 2233444455666677777764 789999998 5565554
Q ss_pred H-hhcccCcEEEEEEecccc
Q psy5771 88 Q-SYYRSANGVIIGEILCFY 106 (108)
Q Consensus 88 ~-~~~~~~~~~i~v~dit~~ 106 (108)
. .+++.+|++++|||+++.
T Consensus 251 ~~~~~~~ad~~llv~D~~~~ 270 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEG 270 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTC
T ss_pred HHHHHHhCCEEEEEEcCCcC
Confidence 4 478999999999999874
No 133
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.63 E-value=3.8e-15 Score=100.85 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=42.7
Q ss_pred CceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 52 NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 52 ~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
||+| +....+.+++ +.+++||++||++++.+|..||++++++|+|||+|.++
T Consensus 153 ~TiG--i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~yd 204 (327)
T 3ohm_A 153 PTTG--IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYD 204 (327)
T ss_dssp CCCS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGG
T ss_pred ceee--EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccc
Confidence 4556 3344555554 78999999999999999999999999999999999653
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=1.8e-16 Score=111.31 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=61.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCC--------hhhhccchHhh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG--------QERFRTITQSY 90 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g--------~~~~~~~~~~~ 90 (108)
-...+|+|+|.+|||||||++++.+..+.. ..++.|.+.......+......+.+|||+| ++++......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 345799999999999999999999876542 334455545444445544455789999999 88888888999
Q ss_pred cccCcEEEEEEeccc
Q psy5771 91 YRSANGVIIGEILCF 105 (108)
Q Consensus 91 ~~~~~~~i~v~dit~ 105 (108)
++.+|++|+|+|.+.
T Consensus 100 ~~~ad~il~VvD~~~ 114 (456)
T 4dcu_A 100 MDEADVIIFMVNGRE 114 (456)
T ss_dssp HHHCSEEEEEEESSS
T ss_pred HhhCCEEEEEEeCCC
Confidence 999999999999764
No 135
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.61 E-value=1.2e-15 Score=107.78 Aligned_cols=86 Identities=14% Similarity=0.034 Sum_probs=49.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccch--------Hhh
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT--------QSY 90 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--------~~~ 90 (108)
..+||+++|.+|||||||+++|.+.+.. ....+....+.....+.+++ +.+.+|||+|++++...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3579999999999999999999987532 22334444566667778877 458999999998766443 336
Q ss_pred cccCcEEEEEEeccccC
Q psy5771 91 YRSANGVIIGEILCFYG 107 (108)
Q Consensus 91 ~~~~~~~i~v~dit~~~ 107 (108)
++.+|++++|||+++..
T Consensus 310 ~~~aD~vl~VvD~s~~~ 326 (476)
T 3gee_A 310 MAEADLILYLLDLGTER 326 (476)
T ss_dssp CSSCSEEEEEEETTTCS
T ss_pred cccCCEEEEEEECCCCc
Confidence 89999999999999764
No 136
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.61 E-value=1.1e-15 Score=100.68 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=57.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccc--cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHh-------h
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVE--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQS-------Y 90 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~-------~ 90 (108)
..++|+++|.+|+|||||++++++..+.. .+.++. .+.....+..+ ...+.+|||+|.+.+..+... +
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG-PRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC-SSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc-eeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 47899999999999999999999887532 121221 12222233334 356899999999776543321 2
Q ss_pred --cccCcEEEEEEeccc
Q psy5771 91 --YRSANGVIIGEILCF 105 (108)
Q Consensus 91 --~~~~~~~i~v~dit~ 105 (108)
.+.+|++++|+|++.
T Consensus 115 ~~~~~~d~il~v~~~d~ 131 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDA 131 (270)
T ss_dssp TTTCEECEEEEEEESSC
T ss_pred hhcCCCCEEEEEEeCCC
Confidence 347999999999865
No 137
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.61 E-value=6.2e-15 Score=103.20 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=65.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCC-------------------------------ccccccCceeeeeEEEEEEE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGD-------------------------------FVEKTGNTIGVDFSMKTVNI 65 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 65 (108)
.....++|+++|..++|||||+++|+... ...+..+.+..+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34566899999999999999999995431 11112233344444445555
Q ss_pred CCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 66 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
++ ..+.+||++|+++|......+++.+|++|+|+|.++
T Consensus 93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~ 130 (439)
T 3j2k_7 93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARK 130 (439)
T ss_pred CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCC
Confidence 44 478999999999999888899999999999999976
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=2.3e-16 Score=110.19 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh--------hhccchHhhccc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE--------RFRTITQSYYRS 93 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~--------~~~~~~~~~~~~ 93 (108)
.+|+++|.+|||||||++++.+..+.. ..++.|.+..............+.+|||+|++ .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 589999999999999999999876532 33444443333333333333468999999985 567777889999
Q ss_pred CcEEEEEEecccc
Q psy5771 94 ANGVIIGEILCFY 106 (108)
Q Consensus 94 ~~~~i~v~dit~~ 106 (108)
+|++|+|+|.++.
T Consensus 83 ad~il~vvD~~~~ 95 (436)
T 2hjg_A 83 ADVIIFMVNGREG 95 (436)
T ss_dssp CSEEEEEEETTTC
T ss_pred CCEEEEEEeCCCC
Confidence 9999999999763
No 139
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.59 E-value=2.4e-15 Score=99.37 Aligned_cols=88 Identities=19% Similarity=0.328 Sum_probs=56.8
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCC-ccccc-------cCceeeeeEEEEEEECCeEEEEEEeeCCChh-------h
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD-FVEKT-------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-------R 82 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~-~~~~~-------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~-------~ 82 (108)
....++|+++|.+|+|||||++++.... +...+ .+|++.+.....+..++..+.+.+|||+|.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 3467999999999999999999976543 44444 5777766766666666667899999999973 2
Q ss_pred hccch-------Hhhccc-------------CcEEEEEEeccc
Q psy5771 83 FRTIT-------QSYYRS-------------ANGVIIGEILCF 105 (108)
Q Consensus 83 ~~~~~-------~~~~~~-------------~~~~i~v~dit~ 105 (108)
+..+. ..|++. +|+++++.+-+.
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~ 127 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 127 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCC
Confidence 33333 344443 778888887654
No 140
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.59 E-value=7.8e-15 Score=99.73 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=41.4
Q ss_pred CceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 52 NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 52 ~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
+|+|+ ....+.++ .+.+++||++||++++.+|..||++++++|+|||+|++
T Consensus 147 ~TiGi--~~~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~y 197 (340)
T 4fid_A 147 KTTGI--HEYDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEY 197 (340)
T ss_dssp CCCSC--EEEEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGT
T ss_pred ceeee--EEEEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCcc
Confidence 44553 33344443 47899999999999999999999999999999999954
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.58 E-value=8.5e-15 Score=103.55 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=63.7
Q ss_pred CCCCCeeeEEEEEcCCCCCHHHHHHHHHcCC-------ccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccch
Q psy5771 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGD-------FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT 87 (108)
Q Consensus 15 ~~~~~~~~ki~lvG~~~vGKtsli~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 87 (108)
.......++|+++|..++|||||++++.+.. +..+..+.+..+.....+.+++ ..+.+||++|+++|....
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~ 90 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAV 90 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHH
T ss_pred hhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHH
Confidence 3344567999999999999999999999776 2223333222223333455555 568999999999998888
Q ss_pred HhhcccCcEEEEEEeccc
Q psy5771 88 QSYYRSANGVIIGEILCF 105 (108)
Q Consensus 88 ~~~~~~~~~~i~v~dit~ 105 (108)
..++..+|++|+|+|.++
T Consensus 91 ~~~~~~aD~~ilVvda~~ 108 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKE 108 (482)
T ss_dssp HHHTTSCCEEEEEEETTT
T ss_pred HHHHhhCCEEEEEEecCC
Confidence 889999999999999875
No 142
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.58 E-value=2.6e-15 Score=105.38 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=64.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCc-cccccCceeeeeEEEEEEECCeEEEEEEeeCCC----------hhhhccch
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG----------QERFRTIT 87 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g----------~~~~~~~~ 87 (108)
+..+||+++|+++||||||+++|.+.+. .....+....+.....+..++. .+.+|||+| ++.|..++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4568999999999999999999997652 2223344445566667777775 588999999 78887776
Q ss_pred Hh-hcccCcEEEEEEeccc
Q psy5771 88 QS-YYRSANGVIIGEILCF 105 (108)
Q Consensus 88 ~~-~~~~~~~~i~v~dit~ 105 (108)
.. +++.+|++++|+|.+.
T Consensus 271 ~~~~~~~ad~~llviD~~~ 289 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEE 289 (456)
T ss_dssp HHHHHHHCSEEEEEEETTT
T ss_pred HHHHHhhCCEEEEEEeCCC
Confidence 64 7899999999999986
No 143
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.57 E-value=1.4e-15 Score=106.11 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc-------hH
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI-------TQ 88 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~-------~~ 88 (108)
.....+||+++|..++|||||++++.+..+. ....+....+.....+.+.+. ..+.+|||+|++.+..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 4456789999999999999999999988763 222233334556666777654 26899999999887654 34
Q ss_pred hhcccCcEEEEEEecc
Q psy5771 89 SYYRSANGVIIGEILC 104 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit 104 (108)
.+++.+|++|+|||++
T Consensus 109 ~~l~~aD~vllVvD~~ 124 (423)
T 3qq5_A 109 RVFYRADCGILVTDSA 124 (423)
T ss_dssp HHHTSCSEEEEECSSS
T ss_pred HHHhcCCEEEEEEeCC
Confidence 5889999999999983
No 144
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.57 E-value=4.3e-15 Score=105.03 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=62.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--Cccccc---------------------------cCceeeeeEEEEEEECCeE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVEKT---------------------------GNTIGVDFSMKTVNIDGKK 69 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--~~~~~~---------------------------~~t~~~~~~~~~~~~~~~~ 69 (108)
...+||+++|.+++|||||+++|+.. .+...+ ....|.+.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 35699999999999999999999754 111100 0111222222222333344
Q ss_pred EEEEEeeCCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 70 ~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
..+.|||++|+++|......+++.+|++|+|+|.++.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 6789999999999999999999999999999999863
No 145
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.57 E-value=1.7e-14 Score=98.56 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=42.8
Q ss_pred CceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 52 NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 52 ~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
||+|+ ....+.++ .+.+++||++|++.++.+|..||++++++|||||+|+++
T Consensus 179 ~T~Gi--~~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d 230 (353)
T 1cip_A 179 KTTGI--VETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230 (353)
T ss_dssp CCCSE--EEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGG
T ss_pred ceece--EEEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccc
Confidence 34553 33455555 477999999999999999999999999999999999975
No 146
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=102.11 Aligned_cols=87 Identities=23% Similarity=0.452 Sum_probs=53.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC-Cccccc--------cCceeeeeEEEEEEECCeEEEEEEeeCCCh-------hh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG-DFVEKT--------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ-------ER 82 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~-------~~ 82 (108)
...++|+|+|++|+|||||++++... .+...+ .+|++.+.....+..++..+.+.+||++|+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 46789999999999999999997653 343333 256665555555555677789999999999 77
Q ss_pred hccchH-------hhcccCcEE-----------EEEEeccc
Q psy5771 83 FRTITQ-------SYYRSANGV-----------IIGEILCF 105 (108)
Q Consensus 83 ~~~~~~-------~~~~~~~~~-----------i~v~dit~ 105 (108)
+..+++ .|++.++++ +++|+|++
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 888877 777766655 48888875
No 147
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.55 E-value=2.7e-15 Score=106.07 Aligned_cols=85 Identities=21% Similarity=0.154 Sum_probs=65.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChh-hhcc--------chHhh
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-RFRT--------ITQSY 90 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~-~~~~--------~~~~~ 90 (108)
.++|+++|.+|||||||++++.+.++. ....|....+.....+.+++. .+.+|||+|.. ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 379999999999999999999987642 222343345666777888774 47899999987 5542 23467
Q ss_pred cccCcEEEEEEeccccC
Q psy5771 91 YRSANGVIIGEILCFYG 107 (108)
Q Consensus 91 ~~~~~~~i~v~dit~~~ 107 (108)
++.+|++|+|||+++..
T Consensus 321 ~~~aD~vl~VvD~s~~~ 337 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPL 337 (482)
T ss_dssp HHHCSEEEEEEETTSCC
T ss_pred hhcccEEEEEecCCCCC
Confidence 89999999999998754
No 148
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.54 E-value=2.3e-14 Score=98.02 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=34.5
Q ss_pred eEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 68 ~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
+.+.+++||++||++++.+|+.||++++++|+|||+|.|
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~y 219 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEY 219 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGT
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccc
Confidence 678999999999999999999999999999999999944
No 149
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.54 E-value=5e-15 Score=104.26 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=56.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchH--------hh
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQ--------SY 90 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~--------~~ 90 (108)
..+||+++|.+|||||||++++.+.++. ....+....++....+.+++. .+.+|||+|...+...+. .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4579999999999999999999986542 223344445566666777775 478999999876544333 36
Q ss_pred cccCcEEEEEEecccc
Q psy5771 91 YRSANGVIIGEILCFY 106 (108)
Q Consensus 91 ~~~~~~~i~v~dit~~ 106 (108)
++.+|++++|+|.++.
T Consensus 301 ~~~aD~vl~VvD~s~~ 316 (462)
T 3geh_A 301 ANTADLVLLTIDAATG 316 (462)
T ss_dssp CCSCSEEEEEEETTTC
T ss_pred hhcCCEEEEEeccCCC
Confidence 8899999999999864
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.53 E-value=1.5e-16 Score=113.67 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=68.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEE
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v 100 (108)
..+|+++|++++|||||+++|.+..+.....+++..++....+..++ ...+.||||||++.|..++..+++.+|++|+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 46899999999999999999998877665556655555444444421 12588999999999999999999999999999
Q ss_pred Eeccc
Q psy5771 101 EILCF 105 (108)
Q Consensus 101 ~dit~ 105 (108)
+|.++
T Consensus 83 VDa~d 87 (537)
T 3izy_P 83 VAADD 87 (537)
T ss_dssp CBSSS
T ss_pred EECCC
Confidence 99986
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.52 E-value=1.6e-13 Score=95.13 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcC---CccccccC--ceeeeeEEEEEEEC---------------C----eEEEE
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSG---DFVEKTGN--TIGVDFSMKTVNID---------------G----KKVKL 72 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~---~~~~~~~~--t~~~~~~~~~~~~~---------------~----~~~~l 72 (108)
.....++|+++|..++|||||++++.+. .+.++..+ |+...+....+... + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3456799999999999999999999843 33444444 55544443333220 1 13679
Q ss_pred EEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 73 QIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 73 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
.+||+||+++|.......+..+|++|+|+|.++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~ 118 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTS
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCC
Confidence 999999999998777777888999999999985
No 152
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=1.5e-14 Score=99.12 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccC--ceeeeeEEEEEEECCe---------------EEEEEEeeCCChhhhc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGN--TIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQERFR 84 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~~ 84 (108)
++|+++|.+|||||||++++.+..+.....| |++ .....+.+++. ...+++||++|+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~--p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIE--PNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCC--CCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEC--ceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999998764222112 333 22223444442 1568999999987652
Q ss_pred ----cch---HhhcccCcEEEEEEecccc
Q psy5771 85 ----TIT---QSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 85 ----~~~---~~~~~~~~~~i~v~dit~~ 106 (108)
.+. ..+++.+|++++|+|+++.
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~ 109 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFEN 109 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence 232 3357999999999999863
No 153
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.52 E-value=1.6e-14 Score=91.31 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=52.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh----------hccchH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----------FRTITQ 88 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----------~~~~~~ 88 (108)
....+|+++|++|||||||++++.+..+...+.|+.|.......+.+++ .+.+||++|... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3457999999999999999999998875555567776554444444433 477999999742 333333
Q ss_pred hhc---ccCcEEEEEEecccc
Q psy5771 89 SYY---RSANGVIIGEILCFY 106 (108)
Q Consensus 89 ~~~---~~~~~~i~v~dit~~ 106 (108)
.++ +.++++++++|+++.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~ 121 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHP 121 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHhhhcccEEEEEEECCCC
Confidence 444 578999999999864
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.52 E-value=4.2e-14 Score=98.81 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=60.1
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCC---cccc---------ccCce-------------------eeeeEEEEEEEC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD---FVEK---------TGNTI-------------------GVDFSMKTVNID 66 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~---~~~~---------~~~t~-------------------~~~~~~~~~~~~ 66 (108)
....+||+++|..++|||||+++|+.+. +... ..++. |++.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3456899999999999999999998653 1110 01111 111111111222
Q ss_pred CeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 67 GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 67 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
.....+.+||++|+++|...+..+++.+|++|+|+|.++
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~ 139 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY 139 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 233568999999999998888889999999999999986
No 155
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=100.12 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=52.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCe---------------EEEEEEeeCCChhhh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQERF 83 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~ 83 (108)
...++|.++|.+|||||||++++.+..+.....|....+.....+.+.+. ...+++||++|....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34579999999999999999999987653333333333344445555442 235899999998764
Q ss_pred cc-------chHhhcccCcEEEEEEeccccC
Q psy5771 84 RT-------ITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 84 ~~-------~~~~~~~~~~~~i~v~dit~~~ 107 (108)
.. .+..+++.+|++++|+|+++..
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 43 4566789999999999998653
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.51 E-value=1.4e-14 Score=101.18 Aligned_cols=84 Identities=20% Similarity=0.223 Sum_probs=60.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC--Cccccc-----------------------------cCceeeeeEEEEEEECCe
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG--DFVEKT-----------------------------GNTIGVDFSMKTVNIDGK 68 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~ 68 (108)
..+||+++|..++|||||+++|+.. .+.+.. .+.+..+.....+.. .
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~--~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--K 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--S
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--C
Confidence 4589999999999999999999864 332110 111111222223333 3
Q ss_pred EEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 69 ~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
...+.+||++|+++|......+++.+|++|+|+|.++
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC
Confidence 4568999999999999888999999999999999987
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.51 E-value=1.2e-14 Score=100.67 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=63.7
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--------Ccccc-------ccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--------DFVEK-------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 83 (108)
...+||+++|..++|||||++++... .+... ...+.|.+.....+.+......+.+||++|+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45689999999999999999999863 22110 0012222233333344334456899999999999
Q ss_pred ccchHhhcccCcEEEEEEecccc
Q psy5771 84 RTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
......+++.+|++|+|+|.++.
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTC
T ss_pred HHHHHHHHHHCCEEEEEEECCCC
Confidence 88888899999999999999863
No 158
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.51 E-value=1.2e-13 Score=95.84 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=61.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC---CccccccC--ceeeeeEEEEEEE-------------C--C----eEEEEEEe
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG---DFVEKTGN--TIGVDFSMKTVNI-------------D--G----KKVKLQIW 75 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~l~ 75 (108)
..+||+++|..++|||||++++.+. .+.++..+ |+...+....+.. + + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4589999999999999999999843 33444444 5554454433322 1 1 13679999
Q ss_pred eCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 76 DTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 76 D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
|++|+++|.......+..+|++|+|+|.++
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~ 116 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANE 116 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTS
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCC
Confidence 999999998777777788899999999985
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.50 E-value=2.9e-14 Score=98.65 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=60.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC-------Ccccc-------ccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG-------DFVEK-------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~-------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 86 (108)
.+||+++|..++|||||+++|... .+... .....|.+.....+.+......+.+||++|+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 589999999999999999999863 11100 0001122222222333333456889999999999888
Q ss_pred hHhhcccCcEEEEEEeccc
Q psy5771 87 TQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 87 ~~~~~~~~~~~i~v~dit~ 105 (108)
...+++.+|++|+|+|.++
T Consensus 83 ~~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAAND 101 (397)
T ss_dssp HHHTSSCCSEEEEEEETTT
T ss_pred HHhhHhhCCEEEEEEECCC
Confidence 8889999999999999986
No 160
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.50 E-value=2.9e-13 Score=93.76 Aligned_cols=89 Identities=19% Similarity=0.099 Sum_probs=61.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCccccc---cCceeee------------eEEEEEEE---CCeEEEEEEeeCCC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT---GNTIGVD------------FSMKTVNI---DGKKVKLQIWDTAG 79 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~---~~t~~~~------------~~~~~~~~---~~~~~~l~l~D~~g 79 (108)
....+||+++|++++|||||++++.+....... ..+.+.. ........ ......+.+||++|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 345689999999999999999999975432210 0000000 00000000 11236799999999
Q ss_pred hhhhccchHhhcccCcEEEEEEecccc
Q psy5771 80 QERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
+++|......+++.+|++++|+|.++.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~ 111 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEP 111 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSC
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 999999999999999999999999864
No 161
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=1.3e-13 Score=96.34 Aligned_cols=86 Identities=23% Similarity=0.156 Sum_probs=57.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccc-----------
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI----------- 86 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~----------- 86 (108)
+..+||+++|++|||||||++++.+.... ....|....+.....+.++++. +.+||++|..+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHH
Confidence 34689999999999999999999987642 1122333344555677888864 789999997543221
Q ss_pred h-HhhcccCcEEEEEEecccc
Q psy5771 87 T-QSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 87 ~-~~~~~~~~~~i~v~dit~~ 106 (108)
. ..+++.+|++++++|+++.
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~ 276 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQG 276 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTC
T ss_pred HHHHHHhhCCEEEEEEeCCCC
Confidence 1 3467889999999999863
No 162
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.49 E-value=3.3e-14 Score=100.01 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=62.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--Cccc-------------------------------cccCceeeeeEEEEEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE-------------------------------KTGNTIGVDFSMKTVNI 65 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 65 (108)
...++|+++|..++|||||+++|+.. .+.+ +...|+. .....+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~--~~~~~~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID--IALWKFET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS--CSCEEEEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEE--EEEEEEec
Confidence 35689999999999999999999864 2211 0112332 22233343
Q ss_pred CCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 66 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+ ...+.+||++|+++|......+++.+|++|+|+|.++
T Consensus 83 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 83 P--KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120 (458)
T ss_dssp S--SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred C--CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc
Confidence 3 3569999999999999888899999999999999975
No 163
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.49 E-value=3.2e-14 Score=101.59 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=59.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--Cccc------------------cccCceeeeeEEEEEEECCeEEEEEEeeCC
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE------------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 78 (108)
....+|+++|.+++|||||+++++.. .+.. ...++.|.+.......+......+++|||+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 45689999999999999999999853 1100 001122222222222222234678999999
Q ss_pred ChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 79 GQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
|+++|......+++.+|++|+|+|.++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~ 117 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAK 117 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTT
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCc
Confidence 999999888899999999999999876
No 164
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.48 E-value=4.6e-14 Score=102.01 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=56.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCC--cc-----ccc------cCceeeeeEEEEEE--E---CCeEEEEEEeeCCChh
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGD--FV-----EKT------GNTIGVDFSMKTVN--I---DGKKVKLQIWDTAGQE 81 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~--~~-----~~~------~~t~~~~~~~~~~~--~---~~~~~~l~l~D~~g~~ 81 (108)
...||+++|+.++|||||+++++... +. ..+ ..+.|.+.....+. + +++.+.+++|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35799999999999999999998621 11 001 11233333322222 2 4567899999999999
Q ss_pred hhccchHhhcccCcEEEEEEecccc
Q psy5771 82 RFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
+|...+..+++.+|++|+|+|.++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~g 107 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQG 107 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC
Confidence 9999999999999999999999863
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.48 E-value=3e-15 Score=106.22 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=64.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~ 99 (108)
...+|+++|+.++|||||++++.+..+.....+.+..+.....+..++. .+.+|||||++.|..++..+++.+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 3468999999999999999999976654433333322222223334443 57899999999999999999999999999
Q ss_pred EEeccc
Q psy5771 100 GEILCF 105 (108)
Q Consensus 100 v~dit~ 105 (108)
|+|.++
T Consensus 81 VVda~~ 86 (501)
T 1zo1_I 81 VVAADD 86 (501)
T ss_dssp EEETTT
T ss_pred Eeeccc
Confidence 999876
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.7e-14 Score=101.10 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=62.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccc-------------------------------cCceeeeeEEEEEEECC
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT-------------------------------GNTIGVDFSMKTVNIDG 67 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~ 67 (108)
...+||+++|.+++|||||+++|+.....-.. .+.+..+.....+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 45689999999999999999999865321100 0111122222333433
Q ss_pred eEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 68 ~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
...+.||||+|+++|......+++.+|++|+|+|.++
T Consensus 244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence 3568999999999999888899999999999999986
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.47 E-value=2e-13 Score=93.68 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=56.1
Q ss_pred eE-EEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCCh---------hhhccchHhhc
Q psy5771 22 FK-VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ---------ERFRTITQSYY 91 (108)
Q Consensus 22 ~k-i~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~---------~~~~~~~~~~~ 91 (108)
++ |+++|.+|||||||++++.+..+.....+....+.....+.+++. .+.+||++|. +.|...+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 45 999999999999999999988763322232223456677888874 5789999996 22333333 57
Q ss_pred ccCcEEEEEEecccc
Q psy5771 92 RSANGVIIGEILCFY 106 (108)
Q Consensus 92 ~~~~~~i~v~dit~~ 106 (108)
+.+|++++|+|+++.
T Consensus 256 ~~aD~il~VvD~s~~ 270 (364)
T 2qtf_A 256 KYSDALILVIDSTFS 270 (364)
T ss_dssp GGSSEEEEEEETTSC
T ss_pred HhCCEEEEEEECCCC
Confidence 899999999999864
No 168
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.47 E-value=8e-14 Score=104.04 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=64.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC------------Cccc----cc--cCceeeeeEEEEEE------------ECC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG------------DFVE----KT--GNTIGVDFSMKTVN------------IDG 67 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~------------~~~~----~~--~~t~~~~~~~~~~~------------~~~ 67 (108)
.....||+++|+.++|||||+++++.. .+.. +. ..|+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 456689999999999999999999863 1110 01 11332222222222 234
Q ss_pred eEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 68 ~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
..+.++||||+|+.+|...+..+++.+|++|+|+|.++.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC
Confidence 578899999999999999999999999999999999864
No 169
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.47 E-value=6.6e-14 Score=93.75 Aligned_cols=84 Identities=12% Similarity=0.033 Sum_probs=58.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceeeeeEEEEEEECCeEEEEEEeeCCChh---------hhccchHh
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE---------RFRTITQS 89 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~---------~~~~~~~~ 89 (108)
...+|+++|.+|||||||++++++..+.. ...+..........+..++ .++.+|||+|.. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 34589999999999999999999887532 1112111112222333333 568899999987 34445567
Q ss_pred hcccCcEEEEEEeccc
Q psy5771 90 YYRSANGVIIGEILCF 105 (108)
Q Consensus 90 ~~~~~~~~i~v~dit~ 105 (108)
+++.+|++++|+|.++
T Consensus 85 ~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR 100 (301)
T ss_dssp CCCCEEEEEEEEETTC
T ss_pred HHhcCCEEEEEEeCCC
Confidence 7899999999999865
No 170
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.47 E-value=1.8e-14 Score=102.88 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=61.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc------------------CCccc----cccCceeeeeEEEEEEECCeEEEEEEee
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRS------------------GDFVE----KTGNTIGVDFSMKTVNIDGKKVKLQIWD 76 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~------------------~~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~l~D 76 (108)
....+|+++|.+++|||||+++++. ..+.. +..+.+........+..++ +.++|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 3467999999999999999999961 11110 0001111112233444444 6689999
Q ss_pred CCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 77 TAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
|+|+++|......+++.+|++|+|+|.++
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~ 117 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAK 117 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTT
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCC
Confidence 99999999999999999999999999986
No 171
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=2.2e-13 Score=94.35 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=49.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccc-cc-----cCceeeeeEEEE---------------EEECC-eEEEEEEeeCCC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KT-----GNTIGVDFSMKT---------------VNIDG-KKVKLQIWDTAG 79 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~-~~-----~~t~~~~~~~~~---------------~~~~~-~~~~l~l~D~~g 79 (108)
+||+++|.+|||||||++++.+..... .+ .++.+..+.... ..+++ +.+++++||++|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876321 11 233332111100 11233 357899999999
Q ss_pred hhh----hccchH---hhcccCcEEEEEEecccc
Q psy5771 80 QER----FRTITQ---SYYRSANGVIIGEILCFY 106 (108)
Q Consensus 80 ~~~----~~~~~~---~~~~~~~~~i~v~dit~~ 106 (108)
... .+.+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 233333 347899999999999874
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.44 E-value=1.2e-13 Score=94.92 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEe
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEI 102 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 102 (108)
+|+++|..++|||||++++. +...|+...+ ..+..++ ..+.+||+||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 1223333222 2333333 458999999999998777788899999999999
No 173
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.44 E-value=3.5e-13 Score=97.44 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=59.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--Cccc-----ccc------CceeeeeE--EEEEEE---CCeEEEEEEeeCCCh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE-----KTG------NTIGVDFS--MKTVNI---DGKKVKLQIWDTAGQ 80 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--~~~~-----~~~------~t~~~~~~--~~~~~~---~~~~~~l~l~D~~g~ 80 (108)
+...+|+++|..++|||||+++++.. .+.. .+. ...|++.. ...+.+ +++.+.++||||+|+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45679999999999999999999752 1111 000 11222221 112222 456789999999999
Q ss_pred hhhccchHhhcccCcEEEEEEecccc
Q psy5771 81 ERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
++|...+..+++.+|++|+|+|.++-
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~g 109 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQG 109 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTB
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCC
Confidence 99998889999999999999999863
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.44 E-value=2.2e-13 Score=90.37 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=25.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcc
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV 47 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~ 47 (108)
...++|+++|++|||||||++++.+..+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 45579999999999999999999998874
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.44 E-value=2.2e-13 Score=95.98 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=49.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc--CCccc-------------------------------cccCceeeeeEEEEEEE
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRS--GDFVE-------------------------------KTGNTIGVDFSMKTVNI 65 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~ 65 (108)
...+||+++|..++|||||+++|+. +.+.+ ....|+. .....+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~--~~~~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVE--VGRAYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEE--eeeEEEec
Confidence 4568999999999999999999874 22211 0112222 22223344
Q ss_pred CCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 66 ~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
++ ..+.+||++|+++|......+++.+|++|+|+|.++
T Consensus 119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~ 156 (467)
T 1r5b_A 119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARR 156 (467)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECST
T ss_pred CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCc
Confidence 44 568999999999999888889999999999999986
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.42 E-value=3.4e-13 Score=90.12 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=25.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCc
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF 46 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~ 46 (108)
....+|+|+|.+|||||||++++++..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3457999999999999999999998876
No 177
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.42 E-value=6.8e-14 Score=101.08 Aligned_cols=85 Identities=22% Similarity=0.188 Sum_probs=61.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCcccc----ccCceeeeeEEEEE------------EECCeEEEEEEeeCCChhhhc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTV------------NIDGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~----~~~t~~~~~~~~~~------------~~~~~~~~l~l~D~~g~~~~~ 84 (108)
.++|+++|+.++|||||++++.+..+... ..++++..+..... .++.....++||||||++.|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 46999999999999999999987654331 22344422211000 000011248999999999999
Q ss_pred cchHhhcccCcEEEEEEeccc
Q psy5771 85 TITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 85 ~~~~~~~~~~~~~i~v~dit~ 105 (108)
.++..+++.+|++|+|+|+++
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINE 105 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTT
T ss_pred HHHHHHHhhCCEEEEEEECCC
Confidence 999999999999999999986
No 178
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.41 E-value=1.2e-13 Score=94.08 Aligned_cols=80 Identities=16% Similarity=0.100 Sum_probs=56.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-cccc-CceeeeeEEEEEEECCeEEEEEEeeCCChhh----hccchHhhccc---
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFV-EKTG-NTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----FRTITQSYYRS--- 93 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~----~~~~~~~~~~~--- 93 (108)
+|+|+|.++||||||++++.+.... ..+. .|.. .....+.+++ ...+.+||++|... +..+...|++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~--p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLV--PNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCC--CCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccC--ceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 6889999999999999999977532 1222 2222 2233455554 13588999999643 44566667654
Q ss_pred CcEEEEEEeccc
Q psy5771 94 ANGVIIGEILCF 105 (108)
Q Consensus 94 ~~~~i~v~dit~ 105 (108)
++++|+|+|+++
T Consensus 237 ~d~ll~VvD~s~ 248 (342)
T 1lnz_A 237 TRVIVHVIDMSG 248 (342)
T ss_dssp CCEEEEEEESSC
T ss_pred ccEEEEEEECCc
Confidence 999999999987
No 179
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.41 E-value=1.8e-13 Score=104.33 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=60.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCC-------ccc-------cccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD-------FVE-------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 84 (108)
...+||+++|+.++|||||++++.+.. +.. ....+.|+++....+.++.....+.+||++|+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999998631 100 111234433333333444444678999999999998
Q ss_pred cchHhhcccCcEEEEEEeccc
Q psy5771 85 TITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 85 ~~~~~~~~~~~~~i~v~dit~ 105 (108)
.....+++.+|++|+|+|.++
T Consensus 374 ~~mi~gas~AD~aILVVDAtd 394 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATD 394 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTT
T ss_pred HHHHHHHhhCCEEEEEEcCCc
Confidence 888889999999999999986
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.41 E-value=6.3e-13 Score=97.51 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=61.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC--Ccc------c------------cccCceeeeeEEEEEEECCeEEEEEEeeC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--DFV------E------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~ 77 (108)
.....+|+++|..++|||||+++++.. .+. . ...+|+. .....+.+++ ..+++|||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~~--~~i~liDT 84 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWKD--HRINIIDT 84 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETT--EEEEEECC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEECC--eEEEEEEC
Confidence 456789999999999999999999842 110 0 1123333 2223344443 67899999
Q ss_pred CChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 78 AGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
+|+.+|...+..+++.+|++|+|+|.++.
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTC
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCC
Confidence 99999999999999999999999999864
No 181
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.41 E-value=1.2e-12 Score=89.30 Aligned_cols=86 Identities=15% Similarity=-0.018 Sum_probs=57.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc---------chHh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT---------ITQS 89 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~---------~~~~ 89 (108)
...++|+++|.+|||||||++++.+..+.....+....+.....+..++ ..+.+||++|...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3457999999999999999999998765322222211223333444443 5689999999854321 1123
Q ss_pred hcccCcEEEEEEecccc
Q psy5771 90 YYRSANGVIIGEILCFY 106 (108)
Q Consensus 90 ~~~~~~~~i~v~dit~~ 106 (108)
+...+|++++|+|+++.
T Consensus 243 ~~~~ad~illV~D~s~~ 259 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEH 259 (357)
T ss_dssp GGGTCSEEEEEECTTCT
T ss_pred HHhcCCEEEEEEeCCcc
Confidence 44579999999999864
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.40 E-value=4.1e-14 Score=102.20 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCC-------------------------------ccccccCceeeeeEEEEEEEC
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD-------------------------------FVEKTGNTIGVDFSMKTVNID 66 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 66 (108)
....+||+++|.+++|||||+++|+... +..+..+.+..+.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 3456899999999999999999996321 01111122222232233333
Q ss_pred CeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 67 GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 67 ~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
....+.||||+|+++|......+++.+|++|+|+|.+.
T Consensus 253 -~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 253 -DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred -CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 34578899999999999888889999999999999985
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.39 E-value=1.3e-12 Score=95.96 Aligned_cols=86 Identities=17% Similarity=0.099 Sum_probs=62.5
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcC--Cccc------------------cccCceeeeeEEEEEEEC-----CeEEEE
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE------------------KTGNTIGVDFSMKTVNID-----GKKVKL 72 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~-----~~~~~l 72 (108)
.....+|+++|..++|||||+.+++.. .+.. +...|+. .....+.++ +..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITIT--SAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceee--eceEEEEECCccccCCceeE
Confidence 345689999999999999999999742 1111 0111222 111223332 234789
Q ss_pred EEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 73 QIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 73 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+||||+|+.+|...+..+++.+|++|+|+|.++
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~ 117 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVG 117 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCC
Confidence 999999999999889999999999999999985
No 184
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.38 E-value=5.6e-13 Score=97.42 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=62.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccc-------------cccC---ceeeeeEEEEEEECCeEEEEEEeeCCChhh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-------------KTGN---TIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~-------------~~~~---t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 82 (108)
+...+|+++|+.|+|||||+++++...... .+.+ ..++.+......+....+.+++||++|+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 345689999999999999999998432210 0000 112223233333333356789999999999
Q ss_pred hccchHhhcccCcEEEEEEeccc
Q psy5771 83 FRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
|......+++.+|++++|+|.+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEA 109 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTT
T ss_pred hHHHHHHHHhhcCcEEEEEcCCc
Confidence 99889999999999999999865
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.36 E-value=1.3e-12 Score=89.25 Aligned_cols=86 Identities=20% Similarity=0.338 Sum_probs=58.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcCCccccccCceee------------------ee------------------------
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV------------------DF------------------------ 58 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~------------------~~------------------------ 58 (108)
..+|+|+|++|+|||||++++.+..+.+....+... .+
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 349999999999999999999998773322211100 00
Q ss_pred ----------EEEEEEE-CCeEEEEEEeeCCChhhh-------------ccchHhhcccCcEEEEEEecccc
Q psy5771 59 ----------SMKTVNI-DGKKVKLQIWDTAGQERF-------------RTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 59 ----------~~~~~~~-~~~~~~l~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
....+.+ ......+.+||+||...+ ..+...|++.++++|+|+|.++.
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~ 185 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ 185 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC
Confidence 0001111 011235889999998776 56677899999999999987653
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.36 E-value=2.3e-12 Score=94.53 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=61.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc--CCccc-----------c-------ccCceeeeeEEEEEEECCeEEEEEEeeCC
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRS--GDFVE-----------K-------TGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~--~~~~~-----------~-------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 78 (108)
....+|+++|.+++|||||+++++. +.+.. . ...|+. .....+.+++ ..+++|||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~--~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT--SAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------C--CSEEEEEETT--EEEEEECCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEe--eeeEEEEECC--eeEEEEECc
Confidence 4568999999999999999999984 22211 0 011221 2223344444 668999999
Q ss_pred ChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 79 GQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
|+.+|...+..+++.+|++|+|+|.++.
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTB
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCC
Confidence 9999998899999999999999999863
No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.34 E-value=2e-12 Score=92.81 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=59.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCcc---ccccCceeeeeEEEEEEECCe--------------------------
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV---EKTGNTIGVDFSMKTVNIDGK-------------------------- 68 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~-------------------------- 68 (108)
.....+|+|+|.+|+|||||++++++..+. ....|+.. .. ..+..+..
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~-~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CF-VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SE-EEEECCSSSEEECCC------------------C
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eE-EEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 345689999999999999999999998763 22223221 00 00000000
Q ss_pred -----E---------EEEEEeeCCChhh-----------hccchHhhcccCcEEEEEEecccc
Q psy5771 69 -----K---------VKLQIWDTAGQER-----------FRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 69 -----~---------~~l~l~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
. ..+.||||+|... +......+++.+|++++|+|.++.
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~ 201 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL 201 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC
Confidence 0 2588999999864 456667788999999999999874
No 188
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.33 E-value=1.3e-12 Score=89.69 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCcc-c-----cccCceeeeeEEEEEEECC-------------------eEEEEEEee
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-E-----KTGNTIGVDFSMKTVNIDG-------------------KKVKLQIWD 76 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~-~-----~~~~t~~~~~~~~~~~~~~-------------------~~~~l~l~D 76 (108)
++|.++|.+|||||||++++.+.... . ...|+.+. +.+.+ ....+++||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~------~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV------VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE------EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee------EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 58999999999999999999875321 1 12344442 12221 235689999
Q ss_pred CCChhhhc----cchH---hhcccCcEEEEEEeccc
Q psy5771 77 TAGQERFR----TITQ---SYYRSANGVIIGEILCF 105 (108)
Q Consensus 77 ~~g~~~~~----~~~~---~~~~~~~~~i~v~dit~ 105 (108)
++|..+.. .+.. .+++.+|++++|+|+++
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 99987642 2322 35789999999999986
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.31 E-value=9e-13 Score=88.30 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=36.5
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcC-Cccccc--------cCceeeeeEEEEEEECCeEEEEEEeeCCCh-------
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSG-DFVEKT--------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ------- 80 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~------- 80 (108)
.....++|+|+|++|||||||++++.+. .++... .++.+.......+...+....+.+||++|+
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 3456789999999999999999998764 444332 123322222222333445678999999998
Q ss_pred hhhccchH
Q psy5771 81 ERFRTITQ 88 (108)
Q Consensus 81 ~~~~~~~~ 88 (108)
+.+..+.+
T Consensus 94 e~~~~l~~ 101 (301)
T 2qnr_A 94 DCFKTIIS 101 (301)
T ss_dssp --CTTHHH
T ss_pred HHHHHHHH
Confidence 56666655
No 190
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.28 E-value=7.1e-12 Score=92.03 Aligned_cols=87 Identities=14% Similarity=0.251 Sum_probs=57.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccc-cccCceee--------------ee--------------------------
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGV--------------DF-------------------------- 58 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~-~~~~t~~~--------------~~-------------------------- 58 (108)
..++|+|+|.+++|||||++++++..+.. ...|+... .+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999876532 22232210 00
Q ss_pred -------------EEEEEEECCeE--EEEEEeeCCChhhh---ccchHhhcccCcEEEEEEecccc
Q psy5771 59 -------------SMKTVNIDGKK--VKLQIWDTAGQERF---RTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 59 -------------~~~~~~~~~~~--~~l~l~D~~g~~~~---~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
....+...... ..+.+|||||.... ......+++.+|++|+|+|.++.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~ 213 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP 213 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc
Confidence 00011111000 24889999997653 34556789999999999998764
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.25 E-value=6.2e-12 Score=85.74 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=25.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCcc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV 47 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~ 47 (108)
...+|+|+|+++||||||++++.+..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4579999999999999999999988774
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.21 E-value=2.3e-11 Score=84.77 Aligned_cols=67 Identities=24% Similarity=0.398 Sum_probs=38.4
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHcCCccccc--------cCceeeeeEEEEEEECCeEEEEEEeeCCChhhh
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT--------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 83 (108)
-....++|+|+|++|||||||++.+++..+.... .++.+.......+...+....+.+||++|...+
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 4566789999999999999999999987663211 233332222222223344457999999998654
No 193
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=4.7e-11 Score=82.62 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=60.3
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHcCCc-cccccCceeeeeEEEEEEECCe-------------E--EEEEEeeCCChh
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGK-------------K--VKLQIWDTAGQE 81 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~-------------~--~~l~l~D~~g~~ 81 (108)
.....++.++|.+|||||||++.+.+... .....|....+.....+.+.+. . ..+.+||++|..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34457999999999999999999998654 3223333333344445555541 1 358899999954
Q ss_pred h-------hccchHhhcccCcEEEEEEeccc
Q psy5771 82 R-------FRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 82 ~-------~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
. +.......++.+|+++.|+|++.
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 22233456789999999999875
No 194
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.14 E-value=2.4e-10 Score=79.31 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=42.2
Q ss_pred ceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 53 TIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 53 t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
|+|++. ..+.+++ +.+++||++|++.++.+|..||++++++|||||+|++
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~y 253 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSY 253 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGG
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECccc
Confidence 455433 4556654 7899999999999999999999999999999999994
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.8e-10 Score=79.25 Aligned_cols=84 Identities=17% Similarity=0.072 Sum_probs=59.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhh----ccch---Hhhcc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF----RTIT---QSYYR 92 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~----~~~~---~~~~~ 92 (108)
...+|.++|.|+||||||++++.+........|-...+.....+.+++. ++++.|++|.-.- ..+. -...+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3468999999999999999999976533222233334566667788775 4789999995321 1111 23467
Q ss_pred cCcEEEEEEeccc
Q psy5771 93 SANGVIIGEILCF 105 (108)
Q Consensus 93 ~~~~~i~v~dit~ 105 (108)
.||++++|.|.++
T Consensus 149 ~ad~il~vvD~~~ 161 (376)
T 4a9a_A 149 TCNLLFIILDVNK 161 (376)
T ss_dssp HCSEEEEEEETTS
T ss_pred hcCccccccccCc
Confidence 8999999999875
No 196
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.04 E-value=6e-10 Score=76.38 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=36.2
Q ss_pred CceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 52 NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 52 ~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
+|+|+. ...+.+++ +.+.+||++|++.++..|..|+++++++|||||+|+++
T Consensus 187 ~T~Gi~--~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d 238 (362)
T 1zcb_A 187 PTKGIH--EYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFD 238 (362)
T ss_dssp CCSSEE--EEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTT
T ss_pred CccceE--EEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcccc
Confidence 455643 34556654 77999999999999999999999999999999999853
No 197
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.97 E-value=9.3e-10 Score=76.69 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=50.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChh----hhccchHhh---cccC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSY---YRSA 94 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~----~~~~~~~~~---~~~~ 94 (108)
.|.|+|.+|+|||||++++.+.... ..+..+. .......+.+++ ...+.+||++|.. .+..+...+ ...+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftT-l~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTT-LSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCS-SCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccce-ecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 4789999999999999999876431 1111111 112223344443 2457899999973 233333333 3469
Q ss_pred cEEEEEEecc
Q psy5771 95 NGVIIGEILC 104 (108)
Q Consensus 95 ~~~i~v~dit 104 (108)
+.++.++|++
T Consensus 237 ~~lL~vvDls 246 (416)
T 1udx_A 237 RVLLYVLDAA 246 (416)
T ss_dssp SEEEEEEETT
T ss_pred HhhhEEeCCc
Confidence 9999999997
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.92 E-value=1.5e-10 Score=73.83 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=32.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeE
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFS 59 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~ 59 (108)
..++|+++|++|||||||+++|+...+...+.++++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 3579999999999999999999987666555567765553
No 199
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.89 E-value=8.4e-10 Score=72.61 Aligned_cols=57 Identities=18% Similarity=0.381 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 82 (108)
++++++|.+|||||||++++.+..... ..++.|.+.....+..+. .+.+|||+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999876532 334445444333344332 478999999653
No 200
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.88 E-value=8.2e-11 Score=78.72 Aligned_cols=66 Identities=15% Similarity=0.032 Sum_probs=54.9
Q ss_pred HHHHHHHcCCcc-ccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 36 CVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 36 sli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
+|+.+|+.+.|. +.+.||+|.. ....+..++ ++.+||+ +++|+.+++.|++++|++|+|||+++..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~-~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDR-VEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCE-EEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccccCCCCCCccE-EEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCC
Confidence 688999999998 8899999944 333332232 6899999 8999999999999999999999999875
No 201
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.85 E-value=2.6e-09 Score=76.70 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=57.8
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--C----------------ccc--cccCceeeeeE--EEEEEECCeEEEEEEee
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--D----------------FVE--KTGNTIGVDFS--MKTVNIDGKKVKLQIWD 76 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--~----------------~~~--~~~~t~~~~~~--~~~~~~~~~~~~l~l~D 76 (108)
...-+|.|+|..++|||||..+++.. . +.. .....-|++.. ...+.+++ ..++|.|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 34578999999999999999998621 0 000 00111222222 22334444 6789999
Q ss_pred CCChhhhccchHhhcccCcEEEEEEecc
Q psy5771 77 TAGQERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
|||+.+|..-....++-+|++|+|+|..
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~ 134 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAA 134 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETT
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecC
Confidence 9999999999999999999999999965
No 202
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=5.5e-09 Score=69.37 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=35.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
...++++++|.+|||||||++++.+..... ..+..+.+.....+..+. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 345899999999999999999999765322 222223222222333333 47899999953
No 203
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.79 E-value=4.3e-09 Score=66.73 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..+|+++|.+|||||||+++++..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.59 E-value=6e-08 Score=66.15 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...+|+++|.+|||||||++++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.58 E-value=2.1e-07 Score=68.62 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=57.6
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC--------Ccccc--------ccCceeeeeEE--EEEEECC-----eEEEEEEe
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--------DFVEK--------TGNTIGVDFSM--KTVNIDG-----KKVKLQIW 75 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~--------~~~~~--------~~~t~~~~~~~--~~~~~~~-----~~~~l~l~ 75 (108)
+..-+|+|+|...+|||||..+++.. +.... .+..-|++... ..+.+.+ ..+.++|.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 45568999999999999999998621 11000 01112222222 2222321 35789999
Q ss_pred eCCChhhhccchHhhcccCcEEEEEEecc
Q psy5771 76 DTAGQERFRTITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 76 D~~g~~~~~~~~~~~~~~~~~~i~v~dit 104 (108)
||||+.+|.......++-+|++|+|+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDav 119 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGT 119 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECC
Confidence 99999999999999999999999999975
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.54 E-value=4.6e-09 Score=76.61 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc--CCccc-----------ccc---CceeeeeEEEEEEECCeEEEEEEeeCCChhhhcc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS--GDFVE-----------KTG---NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT 85 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~--~~~~~-----------~~~---~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~ 85 (108)
-||.|+|..++|||||..+++. +.... ++. ..-|++.....+.+..+...++|.||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999862 11110 000 0112222233333333446689999999999999
Q ss_pred chHhhcccCcEEEEEEecc
Q psy5771 86 ITQSYYRSANGVIIGEILC 104 (108)
Q Consensus 86 ~~~~~~~~~~~~i~v~dit 104 (108)
.....++-+|+.|+|+|..
T Consensus 83 Ev~raL~~~DgavlVVDa~ 101 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAK 101 (638)
T ss_dssp HHHHHHTTCSEEECCEESS
T ss_pred HHHHHHHHhCEEEEEEeCC
Confidence 9999999999999999975
No 207
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.47 E-value=2.1e-09 Score=75.75 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=53.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhh--hccch--------H
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--FRTIT--------Q 88 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--~~~~~--------~ 88 (108)
..+.+|+++|.+|+||||+.+++...... ...++.............+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999998865321 1223333211100011111223356899999843 33333 5
Q ss_pred hhcccCcEEEEEEecccc
Q psy5771 89 SYYRSANGVIIGEILCFY 106 (108)
Q Consensus 89 ~~~~~~~~~i~v~dit~~ 106 (108)
.++..+++.++|+|.||.
T Consensus 116 ~~l~~~~G~~vV~D~tn~ 133 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT 133 (469)
T ss_dssp HHHHTTCCSEEEEESCCC
T ss_pred HHHHhCCCCEEEEeCCCC
Confidence 567678888999999875
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.47 E-value=2.3e-07 Score=63.25 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...|.++|.+|||||||++++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999985
No 209
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.43 E-value=1.5e-06 Score=64.58 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=25.0
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCc
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF 46 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~ 46 (108)
....+|+|+|..++|||||++++.+..+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 3456999999999999999999999876
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.40 E-value=7.2e-08 Score=65.47 Aligned_cols=33 Identities=21% Similarity=0.083 Sum_probs=24.2
Q ss_pred EEEEEeeCCChhhhccchHhhcccCcEEEEEEeccc
Q psy5771 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105 (108)
Q Consensus 70 ~~l~l~D~~g~~~~~~~~~~~~~~~~~~i~v~dit~ 105 (108)
+.+.+|||+|...... ...+.+|++++|+|.+.
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGG 181 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC--
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCc
Confidence 4689999999654432 24689999999999864
No 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.34 E-value=6.7e-07 Score=61.38 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=46.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC------CccccccCceeeeeEEEEEEECCeEEEEEEeeCCChhhhc--------cch
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG------DFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--------TIT 87 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------~~~ 87 (108)
.+|+++|.+|||||||++.+.+. .......| +.+.....+.++.. +.++||||..... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999875 22111112 11222333444432 6899999954221 111
Q ss_pred Hhhc--ccCcEEEEEEec
Q psy5771 88 QSYY--RSANGVIIGEIL 103 (108)
Q Consensus 88 ~~~~--~~~~~~i~v~di 103 (108)
..++ +..+.++++.+-
T Consensus 238 ~~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNE 255 (369)
T ss_dssp HHHSCSSCCCCEEEEECT
T ss_pred HHHhcccccCceEEEEcC
Confidence 2222 567777777765
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.31 E-value=4.6e-07 Score=62.17 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCc-----cccccCceeeeeEEEEEEECCeEEEEEEeeCCChh
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSGDF-----VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 81 (108)
.+|+++|.+|||||||++++.+... .....+..+.+.....+.+++. +.++||||..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~ 222 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGII 222 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcC
Confidence 5799999999999999999987521 1111222232233334444432 7899999964
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.26 E-value=1.4e-06 Score=63.07 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=38.3
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcCCcccccc-----CceeeeeEEEEEEE-CCeEEEEEEeeCCChhh
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTG-----NTIGVDFSMKTVNI-DGKKVKLQIWDTAGQER 82 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~~~~~~~~-----~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~ 82 (108)
...++|+|+|.+|||||||++++.+....-... .|.+. ......+ ......+.++||+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi--~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGI--WMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSE--EEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEE--EEeecccccCCCceEEEecCCCcCc
Confidence 456789999999999999999999875321121 22331 1111111 11123578999999653
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.19 E-value=9.4e-07 Score=58.28 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++++|++|+|||||++.+.+-
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999998864
No 215
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.13 E-value=4e-06 Score=54.29 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~ 42 (108)
.....++++|.+|||||||+..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 345789999999999999999997
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.00 E-value=1.9e-05 Score=55.26 Aligned_cols=27 Identities=26% Similarity=0.710 Sum_probs=23.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcCCc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF 46 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~~~ 46 (108)
..++++|+|++|+|||||++.+.+-.+
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 346799999999999999999987643
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.82 E-value=6e-06 Score=58.87 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHH
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~ 42 (108)
....|+++|.+||||||++.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999988
No 218
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.80 E-value=1.5e-05 Score=49.42 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
+++++|++|+|||||++.+.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988753
No 219
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.80 E-value=1.7e-05 Score=49.57 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
......|+|.|.+|+||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34446899999999999999998864
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.78 E-value=1.5e-05 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|+|++|+|||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999998753
No 221
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.75 E-value=3e-05 Score=48.60 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.....|.++|.+|+||||+++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34467999999999999999998764
No 222
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.70 E-value=2.3e-05 Score=49.14 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.++|+|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 223
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.67 E-value=3.4e-05 Score=48.73 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|+|+|++|+|||||++.+...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998853
No 224
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.65 E-value=3.1e-05 Score=48.46 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
|+|+|++||||+||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999754
No 225
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.65 E-value=3.1e-05 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.|+++|++|+|||||++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 226
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.64 E-value=7.8e-05 Score=52.46 Aligned_cols=62 Identities=26% Similarity=0.299 Sum_probs=38.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC------------------Cccc---cccCceeeeeEEEEE--EE-CCeEEEEEEe
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG------------------DFVE---KTGNTIGVDFSMKTV--NI-DGKKVKLQIW 75 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~------------------~~~~---~~~~t~~~~~~~~~~--~~-~~~~~~l~l~ 75 (108)
...-|.|+|.+++|||+|++++++. .|.. ....|.|+-.....+ .. ++....+.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4456889999999999999999852 2321 111244422221111 11 3456789999
Q ss_pred eCCChh
Q psy5771 76 DTAGQE 81 (108)
Q Consensus 76 D~~g~~ 81 (108)
||+|..
T Consensus 146 DTeG~~ 151 (447)
T 3q5d_A 146 DTQGTF 151 (447)
T ss_dssp EEECCC
T ss_pred cCCccc
Confidence 999953
No 227
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.63 E-value=3.5e-05 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|+|++|+|||||++.+.+-
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998753
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.62 E-value=3.4e-05 Score=47.75 Aligned_cols=20 Identities=25% Similarity=0.629 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~ 43 (108)
++|+|++|+|||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999884
No 229
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.61 E-value=3.7e-05 Score=49.16 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|+|++|+|||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999998864
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.59 E-value=4.3e-05 Score=48.19 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|+|+|++|+|||||++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999865
No 231
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.58 E-value=4.2e-05 Score=48.08 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|+|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999998753
No 232
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.57 E-value=3.7e-05 Score=47.06 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=16.4
Q ss_pred EEEEEcCCCCCHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHR 40 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~ 40 (108)
-++++|++|+|||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 233
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.56 E-value=4.7e-05 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|+|++|+|||||++.+.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.54 E-value=5.5e-05 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|+|+|.+|+|||||++.+...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998753
No 235
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.52 E-value=6.7e-05 Score=45.28 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+|.|.+|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 236
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.50 E-value=6.8e-05 Score=45.47 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+|+|.+|+||||+++.+.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 237
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.49 E-value=8.9e-05 Score=45.07 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.48 E-value=6.9e-05 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...|.|+|++|+|||||++.+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988753
No 239
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.47 E-value=7.7e-05 Score=45.40 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999988643
No 240
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.47 E-value=7.6e-05 Score=46.04 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999874
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.47 E-value=8.6e-05 Score=44.69 Aligned_cols=20 Identities=20% Similarity=0.286 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy5771 22 FKVVLIGDCGVGKTCVVHRF 41 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~ 41 (108)
.-|++.|.+|+||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 242
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.46 E-value=9.1e-05 Score=46.23 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+++|.+|+||||+.+.+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 243
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.46 E-value=8.7e-05 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
++|+|.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 244
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.45 E-value=9.1e-05 Score=46.64 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
++|+|.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 245
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.45 E-value=8.8e-05 Score=45.19 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-|++.|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 246
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.45 E-value=8.2e-05 Score=46.28 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.|+|+|.+|+||||+++.+.+.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999987643
No 247
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.44 E-value=0.00013 Score=45.41 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...|+|.|.+|+||||+.+.+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988863
No 248
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.44 E-value=9.7e-05 Score=47.56 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~ 42 (108)
-.|+|+|.+|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999988
No 249
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.44 E-value=8.8e-05 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
-.|+|+|.+|+|||||++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 250
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.43 E-value=5.7e-05 Score=49.17 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.....|+|.|..|+||||+++.+...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999988753
No 251
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.42 E-value=0.00011 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...+|+|+|.+|+||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.41 E-value=9.5e-05 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+|+|.+|+||||+++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 253
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.41 E-value=0.00014 Score=44.26 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
-.|+|+|.+|+||||+++.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998764
No 254
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.41 E-value=0.00011 Score=45.11 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+|.|.+|+||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 255
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.41 E-value=9.3e-05 Score=46.28 Aligned_cols=21 Identities=43% Similarity=0.689 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998775
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.40 E-value=9.4e-05 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988754
No 257
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.40 E-value=0.00012 Score=45.37 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 258
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.39 E-value=8e-05 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.++++|++|+|||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999987643
No 259
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.38 E-value=0.00011 Score=50.34 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDF 46 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~ 46 (108)
.++++|.+|||||||++.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997543
No 260
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.36 E-value=0.00014 Score=44.61 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 261
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.36 E-value=0.00013 Score=46.18 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+++|+||+||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 262
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.36 E-value=0.00012 Score=46.65 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48899999999999999877
No 263
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.36 E-value=0.00013 Score=45.47 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+|+|+|.+|+||||+++.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 264
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.36 E-value=0.00011 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999988754
No 265
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=0.00013 Score=44.30 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988754
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.35 E-value=0.00013 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 267
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.35 E-value=0.00015 Score=44.48 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+|.|.+|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998764
No 268
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.35 E-value=0.00013 Score=45.56 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
--|+|+|.+|+||||+++.+..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988764
No 269
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.34 E-value=0.00017 Score=44.40 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 270
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.33 E-value=0.00014 Score=46.21 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+|.|.+|+||||+++.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.33 E-value=0.00013 Score=47.79 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+.++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998764
No 272
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.33 E-value=0.00017 Score=46.18 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~ 43 (108)
|+|+|+||+||+|...++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988864
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.32 E-value=0.00015 Score=45.42 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|.|+|..|+|||||++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998765
No 274
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.31 E-value=0.00014 Score=45.90 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-++|+|++|+|||||++.++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 275
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.31 E-value=0.00015 Score=45.64 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+|.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 276
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.31 E-value=0.00016 Score=44.69 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++++|.+|+|||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5889999999999999998753
No 277
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.31 E-value=0.00017 Score=45.53 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|.++|.+|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 278
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.31 E-value=0.0002 Score=43.89 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+++|.+|+||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 279
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.30 E-value=0.00016 Score=46.67 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 280
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.0002 Score=44.18 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+|+|+|.+|+||||+.+.+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988754
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.30 E-value=0.00016 Score=47.39 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.++++|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999998775
No 282
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.29 E-value=0.00016 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998764
No 283
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.29 E-value=0.00015 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999988764
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.29 E-value=0.00017 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 285
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.29 E-value=0.00021 Score=46.11 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...+|+|.|.+|+||||+..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
No 286
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.29 E-value=0.00017 Score=46.86 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 287
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.29 E-value=0.00015 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 288
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.28 E-value=0.00016 Score=44.06 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|+|+|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 289
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.27 E-value=0.00013 Score=46.81 Aligned_cols=30 Identities=10% Similarity=-0.076 Sum_probs=21.0
Q ss_pred CCChhhhccchHhhcccCcEEEEEEecccc
Q psy5771 77 TAGQERFRTITQSYYRSANGVIIGEILCFY 106 (108)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~i~v~dit~~ 106 (108)
.+||+.++.+|+.||.++|++|+|.|-++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~ 138 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAH 138 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTT
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccH
Confidence 348999999999999999999999999875
No 290
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.27 E-value=0.00023 Score=44.46 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
+.|.++|.+|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.27 E-value=0.00016 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4679999999999999998754
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.27 E-value=0.00018 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 293
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.27 E-value=0.00019 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998875
No 294
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.27 E-value=0.00016 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3689999999999999998864
No 295
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.27 E-value=0.00017 Score=46.65 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 296
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.26 E-value=0.00018 Score=48.02 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
.++++|++|+|||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999998
No 297
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.26 E-value=0.00023 Score=44.26 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|++.|.+|+||||+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 298
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.26 E-value=0.0002 Score=45.98 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 299
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.26 E-value=0.00019 Score=48.60 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~ 42 (108)
..+.++|.+|+|||||++.+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 300
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.26 E-value=0.00018 Score=46.89 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998764
No 301
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.25 E-value=0.00017 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..+.++|++|+|||||++.+.+-
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999874
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00024 Score=43.57 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988763
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.25 E-value=0.0001 Score=46.94 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
-++|+|++|+|||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999998
No 304
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.25 E-value=0.00022 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+|+|.+|+||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 305
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.25 E-value=0.00021 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998654
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.24 E-value=0.0002 Score=48.00 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
.++|+|++|+|||||++.+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999876
No 307
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.24 E-value=0.00022 Score=48.83 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.4
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~ 42 (108)
...+||+|+|.+++|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 467899999999999999999863
No 308
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.24 E-value=0.00015 Score=45.99 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.24 E-value=0.00024 Score=43.45 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|++.|.+|+||||+.+.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 310
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.24 E-value=0.00021 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998864
No 311
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.23 E-value=0.00019 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 312
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.23 E-value=0.00018 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998764
No 313
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.23 E-value=0.00022 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998764
No 314
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.23 E-value=0.00025 Score=42.74 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.21 E-value=0.00027 Score=43.75 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
...|.|.|.+|+||||+.+.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999998764
No 316
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.21 E-value=0.00033 Score=43.71 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+|.|.+|+||||+++.+..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 317
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.21 E-value=0.00018 Score=49.10 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.-+++|+|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00029 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..-|++.|.+|+||||+...+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 319
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.20 E-value=0.00023 Score=45.83 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 320
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.20 E-value=0.00022 Score=46.53 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998865
No 321
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.19 E-value=0.00018 Score=43.59 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.+++.|++|+|||+|+..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 322
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.19 E-value=0.00022 Score=46.76 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998754
No 323
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.19 E-value=0.00027 Score=44.91 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+|.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 324
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.18 E-value=0.00042 Score=42.60 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...|+++|.+|+||||+++.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998763
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.17 E-value=0.00022 Score=45.12 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+|+|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 326
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.17 E-value=0.00025 Score=47.61 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.1
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
....-|.|+|++|+|||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3446799999999999999998764
No 327
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.17 E-value=0.00028 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 328
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.16 E-value=6.4e-05 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++++|++|||||||++.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999998653
No 329
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.16 E-value=0.00031 Score=43.55 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..|+|.|.+|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 330
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.16 E-value=0.00026 Score=46.58 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998753
No 331
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.15 E-value=0.00019 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988753
No 332
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.15 E-value=0.00027 Score=47.33 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~ 42 (108)
-.++++|++|+||||+++.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 378999999999999999886
No 333
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.14 E-value=0.00032 Score=44.25 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
-.+++.|++|+|||+|++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.14 E-value=0.00029 Score=45.74 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-|+|+|.+|+|||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 335
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.13 E-value=0.00031 Score=44.21 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-++++|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999873
No 336
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.13 E-value=0.00012 Score=45.04 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+.|+|.+|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998874
No 337
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.12 E-value=0.00033 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+|+|+|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 338
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.11 E-value=0.00035 Score=42.99 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|++.|.+|+||||+.+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 339
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.11 E-value=0.00031 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
--++++|+.|+||||++..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999998763
No 340
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.11 E-value=0.0003 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
-+.++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999988653
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.10 E-value=0.00037 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|++.|.+|+||||+.+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 342
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.10 E-value=0.00033 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...|+++|.+|+||||+.+.+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998764
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.09 E-value=0.00039 Score=42.66 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 344
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.09 E-value=0.00035 Score=43.02 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|++.|.+|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 345
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.09 E-value=0.00048 Score=42.13 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+|.|.+|+||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 346
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.09 E-value=0.0005 Score=45.70 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHH
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~ 42 (108)
....|.|+|.+|+|||||++.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998765
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.09 E-value=0.00038 Score=42.06 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 348
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.09 E-value=0.00034 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
-+.++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999988653
No 349
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.08 E-value=0.00034 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.--++++|++|+||||++..+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998874
No 350
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.08 E-value=0.00035 Score=45.71 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
++++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999998753
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.08 E-value=0.00035 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|.|+|+.|+|||||++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 352
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.08 E-value=0.00036 Score=43.71 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 353
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.07 E-value=0.00034 Score=47.12 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998753
No 354
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.07 E-value=0.00035 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998754
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.07 E-value=0.0004 Score=43.34 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+|.|.+|+||||+++.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 356
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.07 E-value=0.00036 Score=47.81 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4689999999999999998864
No 357
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.07 E-value=0.00037 Score=47.79 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+.++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999998865
No 358
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.06 E-value=0.00039 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999988653
No 359
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.06 E-value=0.0004 Score=43.05 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+++.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998875
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.05 E-value=0.00039 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|++.|.+|+||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 361
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.05 E-value=0.00028 Score=43.07 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=15.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+|.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 362
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.05 E-value=0.00043 Score=42.62 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.-+.++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998874
No 363
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.05 E-value=0.00037 Score=47.68 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.++|+|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998864
No 364
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.05 E-value=0.00041 Score=43.10 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988775
No 365
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.05 E-value=0.00012 Score=45.76 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 366
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.04 E-value=0.0004 Score=47.77 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+.++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999998864
No 367
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.04 E-value=0.00039 Score=47.80 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999988653
No 368
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.04 E-value=0.0004 Score=44.79 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+++.|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 599999999999999998875
No 369
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.04 E-value=0.00043 Score=42.37 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+|+|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 370
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.01 E-value=0.0009 Score=44.10 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.2
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~ 42 (108)
...+.|+|.|.+|+||||+.+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999886
No 371
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.01 E-value=0.00048 Score=43.09 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-++++|++|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.00 E-value=0.00054 Score=44.41 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~ 42 (108)
..|.|+|++|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999887
No 373
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.0005 Score=43.65 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++++|++|+|||+|+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999998863
No 374
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.00 E-value=0.0006 Score=42.59 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...|.++|.+|+|||||++.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998763
No 375
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.99 E-value=0.00048 Score=47.27 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.++|+|++|+|||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
No 376
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.99 E-value=0.00043 Score=45.64 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999987743
No 377
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.99 E-value=0.00026 Score=47.47 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.|+|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5789999999999999887753
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.99 E-value=0.00043 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|+|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999998864
No 379
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.98 E-value=0.0006 Score=41.14 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+|.|.+|+||||+.+.+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.98 E-value=0.00082 Score=45.38 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.5
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~ 42 (108)
...+-|.|+|.+|+|||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998875
No 381
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.98 E-value=0.0005 Score=47.25 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
+.++|++|+|||||++.+.+-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHhcC
Confidence 678999999999999988764
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.98 E-value=0.00053 Score=41.85 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+++|.+|+||||+++.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 383
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.96 E-value=0.0007 Score=45.18 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...|.|+|.+|+|||||++.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998775
No 384
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.95 E-value=0.00051 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
--++++|+.|+||||++..+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999998764
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.95 E-value=0.00048 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998864
No 386
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.94 E-value=0.0007 Score=42.59 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
+.|+|.|.+|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.94 E-value=0.00059 Score=41.67 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
-.+|+|+.|+|||||+..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999875
No 388
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.93 E-value=0.00056 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+++.|++|+|||+|++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999998754
No 389
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.93 E-value=0.0006 Score=43.82 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
-.+++.|++|+|||+|++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998875
No 390
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.92 E-value=0.00033 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+.++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999998865
No 391
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.92 E-value=0.00055 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999988753
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.90 E-value=0.00077 Score=42.99 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..-|+|.|..|+|||||++.+.+-
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999988753
No 393
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.90 E-value=0.00064 Score=42.69 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+++|.+|+||||+++.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998753
No 394
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.90 E-value=0.00084 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999986553
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.89 E-value=0.00058 Score=44.51 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+|+|.+|+||||+.+.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 396
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.89 E-value=0.0006 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
--|+|+|.+|+|||||+..+.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4689999999999999998763
No 397
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.89 E-value=0.00067 Score=46.22 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988763
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.89 E-value=0.00067 Score=43.45 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..-|++.|.+|+||||+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 399
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.88 E-value=0.00062 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 400
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.88 E-value=0.00061 Score=47.55 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|+|+.|+|||||++.+++-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998753
No 401
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.87 E-value=0.00082 Score=43.39 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..+.|.|.|.+|+||||+.+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998865
No 402
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.87 E-value=0.00063 Score=45.78 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.++|.|++|+|||+|++.+..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 403
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.86 E-value=0.00079 Score=39.92 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..|++.|++|+|||++++.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999988764
No 404
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.85 E-value=0.00083 Score=43.39 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~ 42 (108)
.+.|++.|++|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 405
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.85 E-value=0.00089 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999886
No 406
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.85 E-value=0.0007 Score=45.15 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+++.|++|+|||+|++.+.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998875
No 407
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.82 E-value=0.00078 Score=44.79 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|.|++|+|||+|+..+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998754
No 408
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.81 E-value=0.00095 Score=42.64 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=21.6
Q ss_pred CCCeeeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 17 SYDFLFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 17 ~~~~~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+.....|.|+|.+|+||||+.+.+..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344556899999999999999998874
No 409
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.81 E-value=0.00082 Score=44.10 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 410
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00065 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|+|+.|+|||||++-+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998764
No 411
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.00083 Score=42.66 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-++++|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887753
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.81 E-value=0.00033 Score=47.85 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+.++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998865
No 413
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.81 E-value=0.00075 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|+|++|+|||||++.+++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999998753
No 414
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.79 E-value=0.0011 Score=43.97 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.-+++.|++|+|||+|++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4577789999999999998874
No 415
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.79 E-value=0.0006 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|+|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999865
No 416
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.78 E-value=0.0011 Score=46.10 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=22.0
Q ss_pred CCeeeEEEEEcCCCCCHHHHHHHHH
Q psy5771 18 YDFLFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 18 ~~~~~ki~lvG~~~vGKtsli~~~~ 42 (108)
....+|++++|...+||||+++++.
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 3567999999999999999999854
No 417
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.77 E-value=0.00051 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 418
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.77 E-value=0.00087 Score=44.44 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+++.|++|+|||+|++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999998753
No 419
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.76 E-value=0.0015 Score=42.53 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
....+++.|++|+|||+|++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999988753
No 420
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.76 E-value=0.00091 Score=45.20 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 421
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.76 E-value=0.00093 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
++.++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999888653
No 422
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.76 E-value=0.00085 Score=44.66 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998753
No 423
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.75 E-value=0.00092 Score=43.76 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-++|+|++|+|||||+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998874
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.69 E-value=0.0011 Score=43.64 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999987653
No 425
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.68 E-value=0.0012 Score=41.80 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..|+++|++|+|||+|...+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999865
No 426
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.67 E-value=0.0016 Score=44.28 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|+|+|++|+|||+|...+...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 427
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.0009 Score=44.91 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q psy5771 24 VVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~ 43 (108)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 428
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.66 E-value=0.0011 Score=46.71 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+++++|++|+|||++++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999987643
No 429
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.66 E-value=0.0011 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+++.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998743
No 430
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.66 E-value=0.0049 Score=43.54 Aligned_cols=63 Identities=25% Similarity=0.299 Sum_probs=39.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHH---c---------------CCccc---cccCceeeeeEEEEE--EE-CCeEEEEEEe
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFR---S---------------GDFVE---KTGNTIGVDFSMKTV--NI-DGKKVKLQIW 75 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~---~---------------~~~~~---~~~~t~~~~~~~~~~--~~-~~~~~~l~l~ 75 (108)
...=|.|+|..++|||+|++.++ . ..|.- ...-|.|+-.....+ .. ++..+.+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 34456799999999999999543 1 23321 122366643332222 22 5667889999
Q ss_pred eCCChhh
Q psy5771 76 DTAGQER 82 (108)
Q Consensus 76 D~~g~~~ 82 (108)
||-|...
T Consensus 146 DTEG~~d 152 (457)
T 4ido_A 146 DTQGTFD 152 (457)
T ss_dssp EECCBTC
T ss_pred eccCCCC
Confidence 9998543
No 431
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.65 E-value=0.0012 Score=44.04 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~ 42 (108)
-.++++|.+|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999998875
No 432
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.64 E-value=0.0014 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998864
No 433
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.0012 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 36999999999999999998854
No 434
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.62 E-value=0.0014 Score=39.23 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy5771 24 VVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~ 42 (108)
.+|+|+.|+|||+|+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999864
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.62 E-value=0.0021 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..-|+++|.+|+||||+.+++...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999998753
No 436
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.62 E-value=0.001 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.++|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 437
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.0013 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 438
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.0013 Score=43.91 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999987653
No 439
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.61 E-value=0.0014 Score=43.91 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~ 42 (108)
--|+++|.+|+||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 368899999999999999876
No 440
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.61 E-value=0.00039 Score=46.55 Aligned_cols=31 Identities=10% Similarity=-0.085 Sum_probs=26.2
Q ss_pred CCChhhhccchHhhcccCcEEEEEEeccccC
Q psy5771 77 TAGQERFRTITQSYYRSANGVIIGEILCFYG 107 (108)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~i~v~dit~~~ 107 (108)
.+||+.++.+|+.||.++|++|+|.|-++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDre 224 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHK 224 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHh
Confidence 4688999999999999999999999998764
No 441
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.60 E-value=0.0014 Score=45.23 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 442
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.60 E-value=0.0014 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+++.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.59 E-value=0.0013 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5789999999999999998754
No 444
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.58 E-value=0.0014 Score=43.85 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.+++.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998753
No 445
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.58 E-value=0.0014 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.++|.|++|+|||+|++.+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988753
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.57 E-value=0.002 Score=40.28 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..+.|.+.|..|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988753
No 447
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.56 E-value=0.0015 Score=46.47 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-+.|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998864
No 448
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.56 E-value=0.0023 Score=41.24 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=19.9
Q ss_pred CeeeEEEEEcCCCCCHHHHHHHHH
Q psy5771 19 DFLFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 19 ~~~~ki~lvG~~~vGKtsli~~~~ 42 (108)
...+||++.|.+|||||++.-.+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 345899999999999999966554
No 449
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.55 E-value=0.0016 Score=47.06 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 450
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.54 E-value=0.0011 Score=42.18 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+++.|++|+|||+++..++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999988877653
No 451
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.54 E-value=0.0008 Score=39.83 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 35999999999999999887654
No 452
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0016 Score=43.96 Aligned_cols=21 Identities=24% Similarity=0.418 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|+|+|++|+|||||...+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.53 E-value=0.002 Score=39.93 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.|.|.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 454
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.53 E-value=0.0018 Score=43.23 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
-.+++.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988764
No 455
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.53 E-value=0.0017 Score=41.98 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..+++.|++|+|||+|++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46999999999999999998754
No 456
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.52 E-value=0.0017 Score=44.26 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..+++.|++|+|||++++.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 457
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.50 E-value=0.0019 Score=43.62 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|+|+|++|+|||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999854
No 458
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.48 E-value=0.0017 Score=44.12 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+.|+|++|+|||||+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998754
No 459
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.47 E-value=0.00065 Score=43.97 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999998875
No 460
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.46 E-value=0.0019 Score=43.93 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.|+|.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999988753
No 461
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0019 Score=45.24 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-|++.|+||+|||+|++.+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999875
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.46 E-value=0.0018 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-+.++|+.|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998864
No 463
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.46 E-value=0.0019 Score=43.87 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-.|+|.|++|+|||+|++.+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 464
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0019 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|+.|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999998864
No 465
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.44 E-value=0.002 Score=43.84 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
.-|+|.|++|+|||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999998875
No 466
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.43 E-value=0.0014 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 467
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.41 E-value=0.0019 Score=46.35 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.++++|++|+|||+|++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 468
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.41 E-value=0.003 Score=42.58 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|+|+|++|+|||+|...+...
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999998753
No 469
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.40 E-value=0.002 Score=45.06 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-+++.|++|+|||+|++.+.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 470
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.40 E-value=0.0023 Score=43.78 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy5771 24 VVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~ 42 (108)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999865
No 471
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.40 E-value=0.0022 Score=43.47 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
-.+++.|++|+|||++++.+..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 472
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.38 E-value=0.0014 Score=43.38 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..+++.|++|+|||+|++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.37 E-value=0.0033 Score=43.11 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHc
Q psy5771 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 21 ~~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..+|+++|.+|+||||+...+..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999986653
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.37 E-value=0.0021 Score=45.85 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy5771 24 VVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~ 42 (108)
++|+|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 475
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.36 E-value=0.0022 Score=44.49 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
-+.|+|++|+|||||+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 48899999999999999875
No 476
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0023 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
--|++.|+||+|||.|++.+.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999998853
No 477
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.36 E-value=0.0018 Score=47.00 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988753
No 478
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.35 E-value=0.0014 Score=43.79 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 699999999999999998875
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.35 E-value=0.0024 Score=46.55 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.|+|+.|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998864
No 480
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.34 E-value=0.005 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHH
Q psy5771 20 FLFKVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 20 ~~~ki~lvG~~~vGKtsli~~~~ 42 (108)
...-|+++|.+|+||||+.+++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34569999999999999998875
No 481
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0025 Score=44.78 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-|++.|+||+|||+|++.+.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998753
No 482
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.33 E-value=0.0022 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
+|.++|++|+|||||++-+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999998764
No 483
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.33 E-value=0.0028 Score=40.20 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy5771 23 KVVLIGDCGVGKTCVVHRFR 42 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~ 42 (108)
-+++.|++|+|||+|+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999998875
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.32 E-value=0.0028 Score=45.49 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998753
No 485
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.30 E-value=0.0026 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+++.|++|+|||+|++.+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999998753
No 486
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.30 E-value=0.0026 Score=43.60 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..++|.|++|+|||+|++.+...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998754
No 487
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.30 E-value=0.0024 Score=45.87 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998643
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.29 E-value=0.0032 Score=39.12 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcC
Q psy5771 24 VVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 24 i~lvG~~~vGKtsli~~~~~~ 44 (108)
++|+|.+++|||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 489
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.29 E-value=0.003 Score=39.22 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
=+++.|++|+||||+...+...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999998764
No 490
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.29 E-value=0.002 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~ 43 (108)
..|+++|.+||||||++..+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0034 Score=40.14 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q psy5771 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 22 ~ki~lvG~~~vGKtsli~~~~~~ 44 (108)
..|++-|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 492
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.0029 Score=41.72 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999988754
No 493
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.27 E-value=0.0031 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~ 45 (108)
.+.|+|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 494
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.27 E-value=0.0029 Score=42.59 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 495
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.26 E-value=0.0016 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999876643
No 496
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.25 E-value=0.0014 Score=43.76 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
.+++.|++|+|||+|++.+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 499999999999999999875
No 497
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.25 E-value=0.007 Score=47.73 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCccccccCcee
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG 55 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~~~~~~~~~t~~ 55 (108)
++.++|++|+|||||++-+.+- +.|+.|
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~-----~~~~~G 473 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY-----YDVLKG 473 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS-----SCCSEE
T ss_pred EEEEEecCCCcHHHHHHHhccc-----cccccC
Confidence 6889999999999999987643 445555
No 498
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.25 E-value=0.0029 Score=44.89 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRS 43 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~ 43 (108)
-|+++|++|+|||+|++.+.+
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999875
No 499
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.23 E-value=0.0028 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
-++|+|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998753
No 500
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.23 E-value=0.002 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q psy5771 23 KVVLIGDCGVGKTCVVHRFRSG 44 (108)
Q Consensus 23 ki~lvG~~~vGKtsli~~~~~~ 44 (108)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987643
Done!