RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5771
(108 letters)
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 168 bits (429), Expect = 3e-55
Identities = 49/99 (49%), Positives = 67/99 (67%)
Query: 1 MSSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSM 60
M SS + H ++ +LFK ++IGD GVGK+C++ +F F TIGV+F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA 60
Query: 61 KTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
+ VNIDGK++KLQIWDTAGQE FR+IT+SYYR A G ++
Sbjct: 61 RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 99
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 167 bits (426), Expect = 9e-55
Identities = 44/98 (44%), Positives = 63/98 (64%)
Query: 2 SSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMK 61
SS + H + D++FK++LIG+ VGKT + R+ F +T+G+DF +K
Sbjct: 3 SSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK 62
Query: 62 TVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
TV K++KLQIWDTAGQER+RTIT +YYR A G ++
Sbjct: 63 TVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 167 bits (424), Expect = 2e-54
Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 5/104 (4%)
Query: 1 MSSSLTNDHPNT-----FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG 55
M SS + H ++ + YDFLFK+VLIG+ GVGKTC+V RF G F G TIG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 60
Query: 56 VDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
VDF +KTV I+G+KVKLQIWDTAGQERFR+ITQSYYRSAN +I+
Sbjct: 61 VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 166 bits (423), Expect = 3e-54
Identities = 64/86 (74%), Positives = 75/86 (87%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
D+ YDFLFK+VL+GD VGKTCVV RF++G F E+ G+TIGVDF+MKT+ I GK+VKLQ
Sbjct: 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAGQERFRTITQSYYRSANG I+
Sbjct: 82 IWDTAGQERFRTITQSYYRSANGAIL 107
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 166 bits (422), Expect = 4e-54
Identities = 46/86 (53%), Positives = 66/86 (76%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
+DD YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K Q
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAG ER+R IT +YYR A G ++
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALL 107
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 166 bits (422), Expect = 4e-54
Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 1 MSSSLTNDHPNTFQ----DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV 56
M SS + H ++ + Y+F+FKVVLIG+ GVGKT ++ RF +F + TIGV
Sbjct: 1 MGSSHHHHHHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV 60
Query: 57 DFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
+FS +TV + VK QIWDTAG ER+R IT +YYR A G ++
Sbjct: 61 EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALL 103
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 166 bits (422), Expect = 6e-54
Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
Query: 1 MSSSLTNDHPNTFQ----DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV 56
M SS + H ++ DFLFK ++IG G GK+C++H+F F + + +TIGV
Sbjct: 1 MGSSHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV 60
Query: 57 DFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
+F + VN+ GK VKLQIWDTAGQERFR++T+SYYR A G ++
Sbjct: 61 EFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 103
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 165 bits (419), Expect = 7e-54
Identities = 42/86 (48%), Positives = 63/86 (73%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
+Y ++FK ++IGD GVGK+C++H+F F+ +TIGV+F + + + G+K+KLQ
Sbjct: 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAGQERFR +T+SYYR A G ++
Sbjct: 68 IWDTAGQERFRAVTRSYYRGAAGALM 93
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 165 bits (420), Expect = 9e-54
Identities = 52/98 (53%), Positives = 71/98 (72%)
Query: 2 SSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMK 61
+ P + + YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++
Sbjct: 14 ENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR 73
Query: 62 TVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
T+ +DGK +KLQIWDTAGQERFRTIT SYYR A+G+I+
Sbjct: 74 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 111
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 165 bits (419), Expect = 1e-53
Identities = 44/98 (44%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Query: 3 SSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKT 62
+ H + S +FK+++IGD VGKTC+ +RF +G F ++T TIGVDF +
Sbjct: 2 GHHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA 61
Query: 63 VNIDGKKVKLQIWDTAGQERFR-TITQSYYRSANGVII 99
V+IDG+++K+Q+WDTAGQERFR ++ Q YYR+ + V+
Sbjct: 62 VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 99
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 164 bits (418), Expect = 2e-53
Identities = 42/98 (42%), Positives = 61/98 (62%)
Query: 2 SSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMK 61
S + + S +K+VL GD VGK+ + R +F E T+GVDF MK
Sbjct: 9 HHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMK 68
Query: 62 TVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
T+ +DG++ LQ+WDTAGQERFR+I +SY+R A+GV++
Sbjct: 69 TLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 163 bits (416), Expect = 3e-53
Identities = 43/94 (45%), Positives = 64/94 (68%)
Query: 6 TNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI 65
++ N + ++D++FK+++IG+ VGKT + R+ F +T+G+DF +KTV
Sbjct: 8 SSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR 67
Query: 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
K+VKLQIWDTAGQER+RTIT +YYR A G I+
Sbjct: 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 163 bits (416), Expect = 3e-53
Identities = 46/85 (54%), Positives = 66/85 (77%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
++YDFLFK ++IG+ G GK+C++H+F F + + +TIGV+F K +N+ GK VKLQI
Sbjct: 4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFR++T+SYYR A G ++
Sbjct: 64 WDTAGQERFRSVTRSYYRGAAGALL 88
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 163 bits (414), Expect = 4e-53
Identities = 50/85 (58%), Positives = 63/85 (74%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
YD LFK+++IGD GVGK+ ++ RF F TIGVDF ++TV I+G+KVKLQI
Sbjct: 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTIT +YYR +GVI+
Sbjct: 63 WDTAGQERFRTITSTYYRGTHGVIV 87
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 163 bits (414), Expect = 6e-53
Identities = 46/85 (54%), Positives = 61/85 (71%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
DF +V++IG GVGKT ++ RF F E +T+GVDF +KTV + GKK++LQI
Sbjct: 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERF +IT +YYRSA G+I+
Sbjct: 80 WDTAGQERFNSITSAYYRSAKGIIL 104
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 163 bits (414), Expect = 7e-53
Identities = 45/86 (52%), Positives = 60/86 (69%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
D+ K+++IG+ GVGK+ ++ RF F + TIGVDF +KT+++DG K KL
Sbjct: 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 67
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAGQERFRT+T SYYR A GVI+
Sbjct: 68 IWDTAGQERFRTLTPSYYRGAQGVIL 93
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 163 bits (414), Expect = 8e-53
Identities = 39/85 (45%), Positives = 59/85 (69%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
+D++FK+++IG+ VGKT + R+ F +T+G+DF +KT+ + K++KLQI
Sbjct: 2 SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAG ER+RTIT +YYR A G I+
Sbjct: 62 WDTAGLERYRTITTAYYRGAMGFIL 86
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 162 bits (412), Expect = 9e-53
Identities = 50/85 (58%), Positives = 67/85 (78%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQI
Sbjct: 2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTIT +YYR A G+++
Sbjct: 62 WDTAGQERFRTITTAYYRGAMGIML 86
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 163 bits (414), Expect = 9e-53
Identities = 52/85 (61%), Positives = 67/85 (78%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
+ YD+LFK++LIG+ GVGK+C++ RF + +TIGVDF +KTV +DGK VKLQI
Sbjct: 2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTIT SYYR ++G+II
Sbjct: 62 WDTAGQERFRTITSSYYRGSHGIII 86
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 162 bits (413), Expect = 9e-53
Identities = 51/85 (60%), Positives = 68/85 (80%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
+ YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQI
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTIT SYYR A+G+I+
Sbjct: 70 WDTAGQERFRTITSSYYRGAHGIIV 94
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 161 bits (411), Expect = 9e-53
Identities = 41/83 (49%), Positives = 53/83 (63%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
S + FKVVL+G+ VGKT +V R+ F +K T+G F K +NI GK+V L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQERF + YYR +NG I+
Sbjct: 62 TAGQERFHALGPIYYRDSNGAIL 84
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 161 bits (410), Expect = 2e-52
Identities = 47/86 (54%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT-GNTIGVDFSMKTVNIDGKKVKLQ 73
D YD FKV+L+GD GVGKTC++ RF+ G F+ T +T+G+DF K +++DG KVKLQ
Sbjct: 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
+WDTAGQERFR++T +YYR A+ +++
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLL 89
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 162 bits (412), Expect = 2e-52
Identities = 51/85 (60%), Positives = 65/85 (76%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
SYD + K++LIGD GVGK+C++ RF F TIG+DF +KTV+I+GKKVKLQ+
Sbjct: 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTIT +YYR A G+I+
Sbjct: 74 WDTAGQERFRTITTAYYRGAMGIIL 98
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 161 bits (410), Expect = 5e-52
Identities = 46/86 (53%), Positives = 63/86 (73%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
YD LFK+VLIGD GVGK+ ++ RF +F + +TIGV+F+ +T+ I+GK++K Q
Sbjct: 6 YGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQ 65
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAGQER+R IT +YYR A G +I
Sbjct: 66 IWDTAGQERYRAITSAYYRGAVGALI 91
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 160 bits (408), Expect = 5e-52
Identities = 45/82 (54%), Positives = 64/82 (78%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQER+R IT +YYR A G ++
Sbjct: 62 AGQERYRRITSAYYRGAVGALL 83
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 159 bits (405), Expect = 7e-52
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
+ K+V++G+ VGK+ ++ R+ G F + TIGVDF + + ++ + V+L +WDT
Sbjct: 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQE F IT++YYR A ++
Sbjct: 62 AGQEEFDAITKAYYRGAQACVL 83
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 160 bits (406), Expect = 9e-52
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ K+VL+GD G GK+ +V RF FVE +TIG F +T+ ++ VK +IW
Sbjct: 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIW 66
Query: 76 DTAGQERFRTITQSYYRSANGVII 99
DTAGQER+ ++ YYR A II
Sbjct: 67 DTAGQERYHSLAPMYYRGAAAAII 90
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 157 bits (400), Expect = 6e-51
Identities = 36/83 (43%), Positives = 57/83 (68%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
LFKV+L+GD GVGK+ +++R+ + F + +TIGV+F K + +DG V +QIWD
Sbjct: 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQERFR++ +YR ++ ++
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLL 85
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 159 bits (403), Expect = 6e-51
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +
Sbjct: 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 68
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQE+F + YY A II
Sbjct: 69 WDTAGQEKFGGLRDGYYIQAQCAII 93
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 158 bits (401), Expect = 6e-51
Identities = 37/98 (37%), Positives = 46/98 (46%)
Query: 2 SSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMK 61
S + S KV L+GD GVGK+ +V RF F TIG F K
Sbjct: 4 SHHHHHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK 63
Query: 62 TVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
TV + K IWDTAGQERF ++ YYR + +I
Sbjct: 64 TVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 101
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 156 bits (397), Expect = 1e-50
Identities = 50/81 (61%), Positives = 63/81 (77%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D + K++LIGD GVGK+C++ RF F TIG+DF +KTV+I+GKKVKLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 79 GQERFRTITQSYYRSANGVII 99
GQERFRTIT +YYR A G+I+
Sbjct: 61 GQERFRTITTAYYRGAMGIIL 81
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 156 bits (397), Expect = 5e-50
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV-DFSMKTVNIDGKKVKL 72
+ + +K+ LIGD GVGKT ++R G F + T+G + + ++ G +K
Sbjct: 4 SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63
Query: 73 QIWDTAGQERFRTITQSYYRSANGVII 99
+WDTAGQE+ + YY A+G I+
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAIL 90
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 155 bits (395), Expect = 7e-50
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
L KV+++GD GVGKT +++++ + F + TIG DF K V +D + V +QIW
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 76 DTAGQERFRTITQSYYRSANGVII 99
DTAGQERF+++ ++YR A+ ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVL 86
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 155 bits (393), Expect = 2e-49
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 14/113 (12%)
Query: 1 MSSSLTNDHPNTFQ----DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV 56
M SS + H ++ YD+L K++ +GD GVGKT ++R+ F K T+G+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI 60
Query: 57 DFSMKTVNIDGK----------KVKLQIWDTAGQERFRTITQSYYRSANGVII 99
DF K V + + KV LQ+WDTAGQERFR++T +++R A G ++
Sbjct: 61 DFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLL 113
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 154 bits (391), Expect = 2e-49
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 10/95 (10%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-------- 66
D YD+L K + +GD GVGKT V++++ G F K T+G+DF K V
Sbjct: 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64
Query: 67 --GKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
G+++ LQ+WDTAG ERFR++T +++R A G ++
Sbjct: 65 GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLL 99
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 154 bits (390), Expect = 5e-49
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
+ FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + V+LQ+
Sbjct: 10 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 69
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAG ERFR++ SY R + ++
Sbjct: 70 WDTAGLERFRSLIPSYIRDSTVAVV 94
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 152 bits (386), Expect = 9e-49
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
+ FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + V+LQ+
Sbjct: 8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 67
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFR++ SY R + ++
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVV 92
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 151 bits (385), Expect = 1e-48
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK-KVKLQIW 75
S+ K+V++GD GKT + F F ++ TIG+DF ++ + + G V LQIW
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 76 DTAGQERFRTITQSYYRSANGVII 99
D GQ + Y A GV++
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLL 85
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 150 bits (382), Expect = 3e-48
Identities = 35/78 (44%), Positives = 42/78 (53%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV L+GD GVGK+ ++ RF F TIG F KTV + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 82 RFRTITQSYYRSANGVII 99
RFR + YYR + II
Sbjct: 67 RFRALAPMYYRGSAAAII 84
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 149 bits (379), Expect = 7e-48
Identities = 37/78 (47%), Positives = 50/78 (64%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVII 99
R+ ++ YYR A I+
Sbjct: 67 RYHSLAPMYYRGAQAAIV 84
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 149 bits (379), Expect = 1e-47
Identities = 34/85 (40%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKK-VKLQI 74
+ KV+++GD GVGKT ++HR+ + + ++ TIG DF K V +DG K +Q+
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERF+++ ++YR A+ ++
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVL 87
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 150 bits (381), Expect = 1e-47
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRF--RSGDFVEKTGNTIGVDFSMKTVNIDGKKVKL 72
D + KV ++G+ VGK+ ++ F + F++ T GV+ + V I V +
Sbjct: 14 DITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73
Query: 73 QIW--DTAGQERFRTITQSYYRSANGVII 99
+++ DTAG + ++ Y+ I+
Sbjct: 74 ELFLLDTAGSDLYKEQISQYWNGVYYAIL 102
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 137 bits (347), Expect = 4e-43
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+VL+G+ VGK+ +V RF S DF E TIG F + V I+ VK +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 82 RFRTITQSYYRSANGVII 99
RF ++ YYR+A ++
Sbjct: 64 RFASLAPXYYRNAQAALV 81
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 131 bits (331), Expect = 2e-40
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGN--TIGVDFSMKTVNIDGKK---VKLQIWD 76
K++++G+ G GKT ++ + + T+G+D + I K+ + L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 77 TAGQERFRTITQSYYRSANGVII 99
AG+E F + + +
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLA 85
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 129 bits (327), Expect = 1e-39
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 10 PNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKK 69
N + D +FKV+L+G+ GVGK+ + F D + + +D ++
Sbjct: 12 ENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71
Query: 70 VKLQIWDTAGQERFR-TITQSYYRSANGVII 99
V L ++D Q + ++ + +I
Sbjct: 72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLI 102
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 126 bits (319), Expect = 2e-38
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 37/120 (30%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVK----- 71
+K VL+G+ VGK+ +V R F E T TIG F VN++ +K
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62
Query: 72 --------------------------------LQIWDTAGQERFRTITQSYYRSANGVII 99
IWDTAGQER+ +I YYR A I+
Sbjct: 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 122 bits (309), Expect = 6e-37
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
+ + L KV+++G GVGK+ + +F +FVE T + K V +DG++V++
Sbjct: 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQID 65
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
I DTAGQE + I +Y+RS G +
Sbjct: 66 ILDTAGQEDYAAIRDNYFRSGEGFLC 91
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 121 bits (307), Expect = 8e-37
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
+ L KV+++G GVGK+ + +F +FVE T + K V +DG++V++ I
Sbjct: 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDI 70
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
DTAGQE + I +Y+RS G +
Sbjct: 71 LDTAGQEDYAAIRDNYFRSGEGFLC 95
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 120 bits (303), Expect = 3e-36
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
+FKV+L+G+ GVGK+ + F D + + +D ++V L ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 81 ERFR-TITQSYYRSANGVII 99
+ ++ + +I
Sbjct: 62 GDAGGWLQDHCLQTGDAFLI 81
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 119 bits (302), Expect = 4e-36
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D K+V++G GVGK+ + +F FV TI D K ++DG +L I
Sbjct: 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDI 61
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
DTAGQE F + + Y R+ +G ++
Sbjct: 62 LDTAGQEEFGAMREQYMRAGHGFLL 86
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 119 bits (301), Expect = 1e-35
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
++VV+ G GVGK+ +V RF G F + TI + + ++ D LQI D
Sbjct: 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITD 62
Query: 77 TAGQERFRTITQSYYRSANGVII 99
T G +F + + + I+
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFIL 85
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 117 bits (296), Expect = 3e-35
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T + K V +DG++V++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62
Query: 81 ERFRTITQSYYRSANGVII 99
E + I +Y+RS G +
Sbjct: 63 EDYAAIRDNYFRSGEGFLC 81
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 118 bits (298), Expect = 3e-35
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 10 PNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKK 69
FQ KVV++G VGKT + H+F G+F E T+ +S K V + +
Sbjct: 13 NLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDE 71
Query: 70 VKLQIWDTAGQERFRTITQSYYRSANGVII 99
L + DTAGQ+ + + S+ +G ++
Sbjct: 72 FHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 116 bits (293), Expect = 9e-35
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
++V + G GVGK+ +V RF G F E T+ + + ++ D LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 82 RFRTITQSYYRSANGVII 99
+F + + + I+
Sbjct: 63 QFPAMQRLSISKGHAFIL 80
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 115 bits (290), Expect = 3e-34
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+K+V++GD GVGK+ + +F FV+ TI D +K ID + L + D
Sbjct: 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLD 72
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQE F + + Y R+ +G +I
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLI 95
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 114 bits (288), Expect = 4e-34
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI + K V IDG+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y R+ G +
Sbjct: 63 EYSAMRDQYMRTGEGFLC 80
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 114 bits (288), Expect = 5e-34
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + +F G FVEK TI + K V +D ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 82 RFRTITQSYYRSANGVII 99
+F + Y ++ G +
Sbjct: 63 QFTAMRDLYMKNGQGFAL 80
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 114 bits (288), Expect = 6e-34
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
K+ ++G VGK+ + +F G FV+ TI F+ K + ++G++ LQ+ D
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVD 60
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQ+ + Q+Y NG I+
Sbjct: 61 TAGQDEYSIFPQTYSIDINGYIL 83
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 114 bits (287), Expect = 6e-34
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
++KV+L+G GVGK+ + F G G + +++ +DG++ L ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 81 ERFRTITQSYYRSANGVII 99
+ R + + +I
Sbjct: 60 DGGRWLPGHCMAMGDAYVI 78
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 113 bits (284), Expect = 3e-33
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI + K V IDG+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y R+ G +
Sbjct: 64 EYSAMRDQYMRTGEGFLC 81
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 113 bits (284), Expect = 3e-33
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI + K V IDG+ L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y R+ G +
Sbjct: 81 EYSAMRDQYMRTGEGFLC 98
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 111 bits (280), Expect = 8e-33
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+KVV++G GVGK+ + +F +G F+EK TI DF K + +D L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 82 RFRTITQSYYRSANGVII 99
+F ++ Y ++ G I+
Sbjct: 63 QFASMRDLYIKNGQGFIL 80
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 109 bits (275), Expect = 5e-32
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L++VVL+GD GVGKT + F + +G D +T+ +DG+ L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 81 ERFRTIT--QSYYRSANGVII 99
E+ +S + + +I
Sbjct: 63 EKLDKSWSQESCLQGGSAYVI 83
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 115 bits (289), Expect = 1e-31
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTV--------NI 65
+ + KV LIGD GKT ++ + F K T G++ K +
Sbjct: 34 EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD 93
Query: 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
+ K+ WD GQE Q + ++ ++
Sbjct: 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYML 127
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 108 bits (273), Expect = 2e-31
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 2 SSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMK 61
S FQ + K+ + G GVGK+ +V RF + F+ + T+ +
Sbjct: 9 SGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-H 67
Query: 62 TVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
ID + V ++I DTAGQE + R G ++
Sbjct: 68 QATIDDEVVSMEILDTAGQEDTIQREG-HMRWGEGFVL 104
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 103 bits (258), Expect = 2e-29
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+ ++G G GK+ + +F + F+ + + +S +D + V L++ DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLD 80
Query: 82 RFRTITQSYYRSANGVII 99
R + Y A+ ++
Sbjct: 81 TPRNCER-YLNWAHAFLV 97
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 103 bits (260), Expect = 2e-29
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRS--GDFVEKTGNTIGVDFSMKTVNIDGKK--- 69
+S + ++VVLIG+ GVGK+ + + F +G D +T+ +DG+
Sbjct: 31 SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATI 89
Query: 70 VKLQIWDTAGQERFRTITQSYYRSANGVII 99
+ L +W+ G+ + + + + +I
Sbjct: 90 ILLDMWENKGENEW--LHDHCMQVGDAYLI 117
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 102 bits (257), Expect = 2e-29
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
++ ++GD GK+ ++HRF +G + T + K + +DG+ + I + AG
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQYK-KEMLVDGQTHLVLIREEAGA 64
Query: 81 ERFRTITQSYYRSANGVII 99
+ + A+ VI
Sbjct: 65 PDAK-----FSGWADAVIF 78
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 101 bits (255), Expect = 6e-29
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV ++G+ GK+ +VHR+ +G +V++ + G F K + +DG+ L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78
Query: 82 RFRTITQSYYRSANGVII 99
+ + + V+
Sbjct: 79 ELQ-----FAAWVDAVVF 91
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 101 bits (254), Expect = 1e-28
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKK---VK 71
+ ++VVLIG+ GVGK+ + + F + +G D +T+ +DG+ +
Sbjct: 1 EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60
Query: 72 LQIWDTAGQERFRTITQSYYRSANGVII 99
L +W+ G+ + + + + +I
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLI 86
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 93.6 bits (233), Expect = 2e-25
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 1 MSSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSM 60
+ ++ + + ++ K+V++GD VGKTC++ F G+ T+ +FS
Sbjct: 3 AMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS- 61
Query: 61 KTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105
+ ++ L +WDTAGQE + + Y ++ V++ CF
Sbjct: 62 HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL----CF 102
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 87.9 bits (218), Expect = 4e-23
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KVVL+GD G GKT ++ F G F E T+ + + + + GK V L IWDTAGQ+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 82 RFRTITQSYYRSANGVIIGEILCF 105
+ + +Y A+ +++ CF
Sbjct: 94 DYDRLRPLFYPDASVLLL----CF 113
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 85.5 bits (212), Expect = 1e-22
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V +GD VGKTC++ + S F T+ +FS V ++G V L +WDTAGQE
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67
Query: 82 RFRTITQSYYRSANGVIIGEILCF 105
+ + YR A+ I+ F
Sbjct: 68 DYNRLRPLSYRGADVFIL----AF 87
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 83.7 bits (207), Expect = 1e-21
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ D V +DGK V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 82 RFRTITQSYYRSANGVIIGEILCF 105
+ + Y + +I CF
Sbjct: 90 DYDRLRPLSYPQTDVFLI----CF 109
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 83.8 bits (207), Expect = 1e-21
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 1 MSSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSM 60
SS N + K+VL+GD GKT ++ + E T+ +++
Sbjct: 7 HSSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA 66
Query: 61 KTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105
+ + ++V+L +WDT+G + + Y ++ V++ CF
Sbjct: 67 -CLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL----CF 106
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 82.9 bits (205), Expect = 2e-21
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D + + K+V++GD GKT ++H F F E T+ +++ + ID ++++L +
Sbjct: 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSL 80
Query: 75 WDTAGQERFRTITQSYYRSANGVIIGEILCF 105
WDT+G + + Y ++ V+I CF
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLI----CF 107
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 82.1 bits (203), Expect = 4e-21
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKT ++H F F E T+ +++ + ID ++++L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67
Query: 83 FRTITQSYYRSANGVIIGEILCF 105
+ + Y ++ V+I CF
Sbjct: 68 YDNVRPLSYPDSDAVLI----CF 86
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 81.7 bits (202), Expect = 6e-21
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F +F E T+ ++ + +DGK+V+L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85
Query: 83 FRTITQSYYRSANGVIIGEILCF 105
+ + Y + +++ CF
Sbjct: 86 YDRLRPLSYPDTDVILM----CF 104
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 81.3 bits (201), Expect = 7e-21
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K V++GD VGKTC++ + + F + T+ D V +DGK V L +WDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 83 FRTITQSYYRSANGVIIGEILCF 105
+ + Y + +I CF
Sbjct: 66 YDRLRPLSYPQTDVSLI----CF 84
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 80.9 bits (200), Expect = 1e-20
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ + + + +DGK+V+L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQED 85
Query: 83 FRTITQSYYRSANGVIIGEILCF 105
+ + Y + +++ CF
Sbjct: 86 YDRLRPLSYPDTDVILM----CF 104
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 80.9 bits (200), Expect = 2e-20
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V +GD VGKTC++ + S F T+ +FS V +DG+ V L +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQE 68
Query: 82 RFRTITQSYYRSANGVIIGEILCF 105
+ + YR A+ ++ F
Sbjct: 69 DYSRLRPLSYRGADIFVL----AF 88
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 79.4 bits (196), Expect = 5e-20
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K VL+GD VGKT +V + + + + T D V++DG+ V+LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 83 FRTITQSYYRSANGVIIGEILCF 105
F + Y + + ++ CF
Sbjct: 81 FDKLRPLCYTNTDIFLL----CF 99
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 78.7 bits (194), Expect = 7e-20
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F E+ T+ D +V + GK+ L ++DTAGQE
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 82 RFRTITQSYYRSANGVIIGEILCF 105
+ + Y + +I CF
Sbjct: 78 DYDRLRPLSYPMTDVFLI----CF 97
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 67.6 bits (166), Expect = 1e-15
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 22 FKVVLIG-DCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
++ L+G GKT V+ SG F E T+G F+M+ + V +++WD GQ
Sbjct: 23 MELTLVGLQ-YSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITK--GNVTIKLWDIGGQ 77
Query: 81 ERFRTITQSYYRSANGVI 98
RFR++ + Y R + ++
Sbjct: 78 PRFRSMWERYCRGVSAIV 95
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 66.3 bits (162), Expect = 5e-15
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGN----------TIGVDFSMKTV-NIDGKKV 70
FK+V G GKT + S + G T+ DF + + G K
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 71 KLQIWDTAGQERFRTITQSYYRSANGVII 99
+ ++ GQ + + R +G++
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVF 103
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 65.3 bits (160), Expect = 6e-15
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT +++R + G+ V T TIG F+++TV K +K Q+WD G
Sbjct: 8 MRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTY--KNLKFQVWDLGGLT 62
Query: 82 RFRTITQSYYRSANGVI 98
R + YY + + VI
Sbjct: 63 SIRPYWRCYYSNTDAVI 79
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 63.8 bits (156), Expect = 4e-14
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+V+++G GKT +++R GD V T T+G +++T+ K + ++WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQY--KNISFEVWDLGGQT 77
Query: 82 RFRTITQSYYRSANGVI 98
R + Y+ + VI
Sbjct: 78 GVRPYWRCYFSDTDAVI 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 63.4 bits (155), Expect = 4e-14
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT +++R + G+ V T TIG F+++T++ K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVT-TKPTIG--FNVETLSY--KNLKLNVWDLGGQT 73
Query: 82 RFRTITQSYYRSANGVI 98
R + YY VI
Sbjct: 74 SIRPYWRCYYADTAAVI 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 62.2 bits (152), Expect = 9e-14
Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++++G GKT ++++ + G+ V T TIG F+++TV K + +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNISFTVWDVGGQDK 56
Query: 83 FRTITQSYYRSANGVI 98
R + + Y+++ G+I
Sbjct: 57 IRPLWRHYFQNTQGLI 72
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 62.3 bits (152), Expect = 1e-13
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV+++G GKT ++++F + V T TIG +++ + I + +WD GQE
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIG--SNVEEIVI--NNTRFLMWDIGGQE 76
Query: 82 RFRTITQSYYRSANGVI 98
R+ +YY + VI
Sbjct: 77 SLRSSWNTYYTNTEFVI 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 62.3 bits (152), Expect = 1e-13
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++ +F D T+G F++KT+ + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEH--RGFKLNIWDVGGQK 73
Query: 82 RFRTITQSYYRSANGVI 98
R+ ++Y+ S +G+I
Sbjct: 74 SLRSYWRNYFESTDGLI 90
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 62.2 bits (152), Expect = 1e-13
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++L+G GKT ++ + S D T G F++K+V + KL +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQS--QGFKLNVWDIGGQR 71
Query: 82 RFRTITQSYYRSANGVI 98
+ R +SY+ + + +I
Sbjct: 72 KIRPYWRSYFENTDILI 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 62.3 bits (152), Expect = 1e-13
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV+++G GKT ++++F + V T TIG +++ + I + +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIG--SNVEEIVI--NNTRFLMWDIGGQE 71
Query: 82 RFRTITQSYYRSANGVI 98
R+ +YY + VI
Sbjct: 72 SLRSSWNTYYTNTEFVI 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 62.2 bits (152), Expect = 2e-13
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 23 KVVLIG-DCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K++ +G D GKT ++H ++ T + + + I +K +D G
Sbjct: 25 KLLFLGLD-NAGKTTLLHMLKNDRLAT-LQPTWH--PTSEELAI--GNIKFTTFDLGGHI 78
Query: 82 RFRTITQSYYRSANGVI 98
+ R + + Y+ NG++
Sbjct: 79 QARRLWKDYFPEVNGIV 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 60.8 bits (148), Expect = 6e-13
Identities = 22/77 (28%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQD 84
Query: 82 RFRTITQSYYRSANGVI 98
+ R + + Y+++ G+I
Sbjct: 85 KIRPLWRHYFQNTQGLI 101
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 60.4 bits (147), Expect = 7e-13
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 22 FKVVLIG-DCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
V+ +G D GKT ++++ + + + TIG FS++ + ++D +G
Sbjct: 22 VHVLCLGLD-NSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSG 76
Query: 80 QERFRTITQSYYRSANGVI 98
Q R+R + + YY+ +I
Sbjct: 77 QGRYRNLWEHYYKEGQAII 95
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 59.6 bits (145), Expect = 2e-12
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 23 KVVLIG-DCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+V +G D GKT ++H + + T+ + + + I + +D G
Sbjct: 27 KLVFLGLD-NAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELTI--AGMTFTTFDLGGHI 80
Query: 82 RFRTITQSYYRSANGVI 98
+ R + ++Y + NG++
Sbjct: 81 QARRVWKNYLPAINGIV 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 57.8 bits (140), Expect = 8e-12
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQE 81
V+ +G C GKT + R +G + + T +I S + + + L + D G E
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65
Query: 82 RFR-TITQSYYRSANGVI 98
R + + SA V+
Sbjct: 66 SLRFQLLDRFKSSARAVV 83
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 58.4 bits (141), Expect = 1e-11
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T T+G F+++TV K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY--KNVKFNVWDVGGQD 377
Query: 82 RFRTITQSYYRSANGVI 98
+ R + + YY G+I
Sbjct: 378 KIRPLWRHYYTGTQGLI 394
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 55.7 bits (134), Expect = 1e-10
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 2 SSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMK 61
SS N P + +++++G GKT ++++ + G+ V T TIG F+++
Sbjct: 146 SSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVE 202
Query: 62 TVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98
TV K + +WD GQ++ R + + Y+++ G+I
Sbjct: 203 TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 54.0 bits (130), Expect = 2e-10
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++ G GKT ++ + T + + + + + D G +
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQE---PLSAADY--DGSGVTLVDFPGHVK 103
Query: 83 FRTITQSYYRS----ANGVI 98
R Y ++ G+I
Sbjct: 104 LRYKLSDYLKTRAKFVKGLI 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 52.5 bits (126), Expect = 1e-09
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
+++ G GKT ++ + T + + + + + D G +
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQE---PLSAADY--DGSGVTLVDFPGHVKL 68
Query: 84 RTITQSYYRSA----NGVI 98
R Y ++ G+I
Sbjct: 69 RYKLSDYLKTRAKFVKGLI 87
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 52.3 bits (125), Expect = 2e-09
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 1 MSSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSM 60
+ D++ L K V++GD VGKTC++ + + F + T+ D
Sbjct: 135 REGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYS 193
Query: 61 KTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIGEILCF 105
V +DGK V L +WDTAG E + + Y + +I CF
Sbjct: 194 ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI----CF 234
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 50.8 bits (121), Expect = 5e-09
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 25/93 (26%)
Query: 28 GDCGVGKTCVVHRFRSG---DFVEKTGNTIG-VDFSMKTVNID--------------GKK 69
G CG+GK+C+ +RF +F + + DF + VN D +
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94
Query: 70 VKLQIW-------DTAGQERFRTITQSYYRSAN 95
K+ I D Q T Q Y + A
Sbjct: 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAA 127
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 50.0 bits (119), Expect = 6e-09
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 23 KVVLIGDCGVGKTC----VVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
+++L+G GK+ V H+ + +T ++ V QIWD
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTNK--IYKDDISNSSF-VNFQIWDFP 77
Query: 79 GQERFRTIT---QSYYRSANGVI 98
GQ F T + +R +I
Sbjct: 78 GQMDFFDPTFDYEMIFRGTGALI 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 48.5 bits (115), Expect = 4e-08
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 23 KVVLIGDCGVGKTC----VVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
K++L+G G GK+ + + + D + G TI V+ + G + L +WD
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEH--SHLRFLGN-MTLNLWDCG 60
Query: 79 GQERFRTITQSYYRSA 94
GQ+ F + +
Sbjct: 61 GQDVFMENYFTKQKDH 76
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 36.2 bits (83), Expect = 8e-04
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 24 VVLIGDCGVGKTC----VVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
V+L+G GK+ V H + D +T + ID L + + G
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFSTLID-----LAVMELPG 55
Query: 80 QERFR---TITQSYYRSANGVI 98
Q + ++ ++S ++
Sbjct: 56 QLNYFEPSYDSERLFKSVGALV 77
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.3 bits (78), Expect = 0.003
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV----EKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
F F ++ +G+ G+GK+ ++ + F T + + + + ++KL I
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIV 100
Query: 76 DTAG 79
T G
Sbjct: 101 STVG 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.014
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 22/91 (24%)
Query: 3 SSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHR-FRSGDFVEKTGNTIGVDF--S 59
+L P V++ G G GKT V S K I F +
Sbjct: 142 QALLELRPAKN----------VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI---FWLN 188
Query: 60 MKTVNIDGKKVKLQIWDTAGQERFRTITQSY 90
+K N +++ Q+ I ++
Sbjct: 189 LKNCNSPETVLEML------QKLLYQIDPNW 213
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 32.1 bits (73), Expect = 0.020
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 23 KVVLIGDCGVGKTCVVH------RFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
V+++G GVGK+ V+ R F + + M + + G + I D
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV-----MVSRTMGGFTIN--IID 90
Query: 77 TAG 79
T G
Sbjct: 91 TPG 93
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.7 bits (73), Expect = 0.028
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 25 VLIGDCGVGKTCVV----HRFRSGD 45
VLIG+ GVGKT +V R GD
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGD 219
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.9 bits (69), Expect = 0.055
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 20 FLFKVVLIGDCGVGKT---------CVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKV 70
F F ++++G+ G+GK+ + EK T+ ++ S + G K+
Sbjct: 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 71 KLQIWDTAGQERFRTITQSY 90
+L + DT G +
Sbjct: 77 RLTVVDTPGYGDAINCRDCF 96
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 31.0 bits (71), Expect = 0.057
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 25 VLIGDCGVGKTCVV 38
VLIG+ GVGKT +
Sbjct: 205 VLIGEPGVGKTAIA 218
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.058
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 17/78 (21%)
Query: 34 KTCVVHRF-------RSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86
K +RF S + + I D V+ + K +++ ++DT R +
Sbjct: 413 KLKFSNRFLPVASPFHS-HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 87 TQSYYRSANGVIIGEILC 104
+ S I E +
Sbjct: 472 SGS---------ISERIV 480
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 30.7 bits (69), Expect = 0.074
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 23 KVVLIGDCGVGKTCVVH------RFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
++++G GVGK+ V+ F + M + + G + I D
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG-----PRPVMVSRSRAGFTLN--IID 93
Query: 77 TAG 79
T G
Sbjct: 94 TPG 96
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 30.2 bits (69), Expect = 0.090
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 25 VLIGDCGVGKTCVV 38
VLIG+ GVGKT +
Sbjct: 205 VLIGEPGVGKTAIA 218
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.11
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 11/42 (26%)
Query: 29 DCGVGKTCVVHRFRSGDFV-EKTGNTIG---VD-------FS 59
+C V +V RF GD V G + VD FS
Sbjct: 26 ECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFS 67
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.2 bits (67), Expect = 0.12
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV--------EKTGNTIGVDFSMKTVNIDGKKVK 71
F F ++++G+ G+GK+ +++ D + T+ V+ S + G ++
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89
Query: 72 LQIWDTAG 79
L I DT G
Sbjct: 90 LTIVDTPG 97
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.70A {Plasmodium falciparum}
Length = 187
Score = 29.2 bits (66), Expect = 0.15
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 25 VLIGDCGVGKTCVV----HRFRSGD 45
+L+GD GVGKT +V + GD
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGD 71
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 29.2 bits (66), Expect = 0.16
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 25 VLIGDCGVGKTCVV----HRFRSGD 45
VLIG+ GVGKT +V R +G+
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGE 71
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.0 bits (64), Expect = 0.26
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 20 FLFKVVLIGDCGVGKTCVV--------HRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVK 71
F F ++++G+ G+GK+ ++ + + T+ V+ S + G ++
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 66
Query: 72 LQIWDTAG 79
L I DT G
Sbjct: 67 LTIVDTPG 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 29.1 bits (66), Expect = 0.27
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 25 VLIGDCGVGKTCVV 38
+L+G+ GVGKT +
Sbjct: 211 LLVGESGVGKTAIA 224
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.4 bits (63), Expect = 0.35
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 20/91 (21%)
Query: 23 KVVLIGDCGVGKTCVVH------RFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
++VL+G G GK+ + F SG +I ++ + ++ + D
Sbjct: 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTA----AKSITKKCEKRSSSWKETELV--VVD 84
Query: 77 TAG--------QERFRTITQSYYRSANGVII 99
T G E + I + ++ G
Sbjct: 85 TPGIFDTEVPNAETSKEIIRCILLTSPGPHA 115
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 28.5 bits (63), Expect = 0.42
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVN--IDGKKVKLQIWDTAG 79
V + G+ G GK+ ++ R E+ GV + + WD G
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129
Query: 80 QERFRTITQSYYR 92
+Y
Sbjct: 130 IGSTNFPPDTYLE 142
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 26.6 bits (58), Expect = 1.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 24 VVLIGDCGVGKTCVVHR 40
V+L+G G GK+ +
Sbjct: 27 VILVGSPGSGKSTIAEE 43
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 26.6 bits (58), Expect = 2.0
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 10 PNTFQDDSYDFLFKVVLIGDCGVGKTCVVH------RFRSGDFVEKTGNTIGVDFSMKTV 63
P+ + +++L+G G GK+ + F S T+ S
Sbjct: 11 PHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLG----SQTLTKTCSKSQG 66
Query: 64 NIDGKKVKLQIWDTAG--------QERFRTITQSYYRSANGVII 99
+ +++ I DT + ++ + + Y SA G +
Sbjct: 67 SWGNREIV--IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHV 108
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B
1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D
2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D
2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Length = 209
Score = 25.9 bits (58), Expect = 2.7
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFS--MK 61
F++ + VG++ V F V+ TG + G F+ +K
Sbjct: 82 FRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVK 123
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus}
Length = 211
Score = 25.9 bits (58), Expect = 2.8
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFS--MK 61
F + G FR G +V+ T TIG F MK
Sbjct: 84 FNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMK 125
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 25.8 bits (57), Expect = 3.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 24 VVLIGDCGVGKT 35
+ +G GVGKT
Sbjct: 41 LTFVGSPGVGKT 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 25.8 bits (56), Expect = 3.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 24 VVLIGDCGVGKTCVVHRF 41
+ + G G GKT VV
Sbjct: 48 IFIYGLTGTGKTAVVKFV 65
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 25.4 bits (55), Expect = 3.7
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 21/91 (23%)
Query: 22 FKVVLIGDCGVGKTCVVH------RFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+++L+G G GK+ + RF S + + D V ++
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRAC----TTGSRRWDKCHV--EVV 75
Query: 76 DTAG---------QERFRTITQSYYRSANGV 97
DT Y SA G
Sbjct: 76 DTPDIFSSQVSKTDPGCEERGHCYLLSAPGP 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 25.9 bits (56), Expect = 3.7
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVK 71
+ +G G GKT V + K + D K ++ ++V
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDV--KQAYVNCREVG 93
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 25.6 bits (56), Expect = 4.0
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 24/79 (30%)
Query: 22 FKVVLI-GDCGVGKTCVVH------RF----------RSGDFVE-------KTGNTIGVD 57
F+ ++ G G+GKT H + RS + + +G
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYF 136
Query: 58 FSMKTVNIDGKKVKLQIWD 76
+ K + I D
Sbjct: 137 KHNEEAQNLNGKHFVIIMD 155
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component;
PTS system, fructose specific IIB PFAM02379, PSI-2,
MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Length = 106
Score = 24.7 bits (54), Expect = 4.3
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K++ I C G + H + + + ++K + +GV +K++ G E
Sbjct: 4 KLLAITSCPNG---IAHTYMAAENLQKAADRLGVS------------IKVETQGGIGVE- 47
Query: 83 FRTITQSYYRSANGVII 99
+T+ R A+ +II
Sbjct: 48 -NKLTEEEIREADAIII 63
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 24.9 bits (55), Expect = 5.1
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 27/72 (37%)
Query: 23 KVVLIGDCGVGKTCVVHR--------FRSGD--FVEKTGNTIGVDFSMKTVNIDGKKVKL 72
K VL+G G GK+ + R D ++TG +I
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIA----------------- 46
Query: 73 QIWDTAGQERFR 84
I+ T G++ FR
Sbjct: 47 DIFATDGEQEFR 58
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein,
structural genomics, PSI-2; NMR {Escherichia coli}
Length = 111
Score = 24.8 bits (54), Expect = 5.4
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K++ + C +G + H F + +E+ G + ++T DG + +L
Sbjct: 7 KLIALCACPMG---LAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRL---------- 53
Query: 83 FRTITQSYYRSANGVII 99
T A +I
Sbjct: 54 ----TAQDIAEATIIIH 66
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 25.0 bits (55), Expect = 5.4
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 57 DFSMKTVNIDGKKVKLQIWDTAGQ 80
FS+ N G+K+ +
Sbjct: 13 YFSLP--NEKGEKLSRSAERFRNR 34
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble
monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A
{Vibrio cholerae} PDB: 3o44_A
Length = 721
Score = 25.2 bits (54), Expect = 6.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 48 EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92
E +G +GV ++ V+ DG K KL+ + Q R+ T YR
Sbjct: 289 EVSGFELGVTGGVE-VSGDGPKAKLEARASYTQSRWLTYNTQDYR 332
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 24.9 bits (53), Expect = 7.1
Identities = 5/48 (10%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVK 71
+ K +V+ + + + F ++ID ++
Sbjct: 48 FYITNADDSTKFQLVNDVMD-ELITSSARKELPIF--DYIHIDALELA 92
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 24.8 bits (54), Expect = 7.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 24 VVLIGDCGVGKT 35
+ L GD G+GK+
Sbjct: 155 LYLYGDMGIGKS 166
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 24.4 bits (54), Expect = 8.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 83 FRTITQSYYRSANGVIIGEILCFYG 107
F +I S RS + V G+I F+G
Sbjct: 226 FDSIYWSVNRSKSDVSYGDIERFWG 250
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 24.3 bits (53), Expect = 8.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 24 VVLIGDCGVGKT 35
+ L G GVGKT
Sbjct: 57 LYLHGSFGVGKT 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,699,317
Number of extensions: 90013
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 168
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)