RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5771
(108 letters)
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 114 bits (286), Expect = 2e-34
Identities = 60/91 (65%), Positives = 71/91 (78%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YDFLFK+VLIG+ GVGKTC+V RF G F G TIGVDF +KTV I+G+KVKLQIWDT
Sbjct: 2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61
Query: 78 AGQERFRTITQSYYRSANGVIIGEILCFYGT 108
AGQERFR+ITQSYYRSAN +I+ + +
Sbjct: 62 AGQERFRSITQSYYRSANALILTYDITCEES 92
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 114 bits (286), Expect = 2e-34
Identities = 50/83 (60%), Positives = 67/83 (80%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQERFRTIT +YYR A G+++
Sbjct: 62 TAGQERFRTITTAYYRGAMGIML 84
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 112 bits (280), Expect = 3e-33
Identities = 52/82 (63%), Positives = 66/82 (80%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIG+ GVGK+C++ RF + +TIGVDF +KTV +DGK VKLQIWDT
Sbjct: 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQERFRTIT SYYR ++G+II
Sbjct: 63 AGQERFRTITSSYYRGSHGIII 84
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 107 bits (267), Expect = 1e-31
Identities = 49/79 (62%), Positives = 62/79 (78%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
+ K++LIGD GVGK+C++ RF F TIG+DF +KTV+I+GKKVKLQIWDTAGQ
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 81 ERFRTITQSYYRSANGVII 99
ERFRTIT +YYR A G+I+
Sbjct: 62 ERFRTITTAYYRGAMGIIL 80
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 102 bits (255), Expect = 9e-30
Identities = 40/82 (48%), Positives = 60/82 (73%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
+D++FK+++IG+ VGKT + R+ F +T+G+DF +KT+ + K++KLQIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQER+RTIT +YYR A G I+
Sbjct: 62 AGQERYRTITTAYYRGAMGFIL 83
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 97.6 bits (242), Expect = 9e-28
Identities = 47/85 (55%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT-GNTIGVDFSMKTVNIDGKKVKLQI 74
D YD FKV+L+GD GVGKTC++ RF+ G F+ T +T+G+DF K +++DG KVKLQ+
Sbjct: 1 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFR++T +YYR A+ +++
Sbjct: 61 WDTAGQERFRSVTHAYYRDAHALLL 85
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 96.1 bits (238), Expect = 4e-27
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 10/92 (10%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI----------DG 67
YD+L K++ +GD GVGKT ++R+ F K T+G+DF K V
Sbjct: 2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61
Query: 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVII 99
KV LQ+WDTAGQERFR++T +++R A G ++
Sbjct: 62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLL 93
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 95.8 bits (237), Expect = 5e-27
Identities = 46/83 (55%), Positives = 65/83 (78%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YDFLFK ++IG+ G GK+C++H+F F + + +TIGV+F K +N+ GK VKLQIWD
Sbjct: 1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQERFR++T+SYYR A G ++
Sbjct: 61 TAGQERFRSVTRSYYRGAAGALL 83
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 93.8 bits (232), Expect = 3e-26
Identities = 45/84 (53%), Positives = 59/84 (70%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D+ K+++IG+ GVGK+ ++ RF F + TIGVDF +KT+++DG K KL I
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60
Query: 75 WDTAGQERFRTITQSYYRSANGVI 98
WDTAGQERFRT+T SYYR A GVI
Sbjct: 61 WDTAGQERFRTLTPSYYRGAQGVI 84
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 92.2 bits (228), Expect = 1e-25
Identities = 45/82 (54%), Positives = 64/82 (78%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K QIWDT
Sbjct: 1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQER+R IT +YYR A G ++
Sbjct: 61 AGQERYRRITSAYYRGAVGALL 82
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 91.5 bits (226), Expect = 2e-25
Identities = 42/82 (51%), Positives = 62/82 (75%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
Y ++FK ++IGD GVGK+C++H+F F+ +TIGV+F + + + G+K+KLQIWDT
Sbjct: 1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQERFR +T+SYYR A G ++
Sbjct: 61 AGQERFRAVTRSYYRGAAGALM 82
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 76.2 bits (186), Expect = 2e-19
Identities = 37/78 (47%), Positives = 50/78 (64%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVII 99
R+ ++ YYR A I+
Sbjct: 67 RYHSLAPMYYRGAQAAIV 84
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 75.8 bits (185), Expect = 2e-19
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + ++LQ+WDTAGQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 82 RFRTITQSYYRSANGVIIGEILCFYGT 108
RFR++ SY R + ++ + +
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNS 87
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 76.1 bits (186), Expect = 2e-19
Identities = 45/80 (56%), Positives = 60/80 (75%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
+LFK ++IGD GVGK+C++ +F F TIGV+F + VNIDGK++KLQIWDTAG
Sbjct: 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61
Query: 80 QERFRTITQSYYRSANGVII 99
QE FR+IT+SYYR A G ++
Sbjct: 62 QESFRSITRSYYRGAAGALL 81
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 75.8 bits (185), Expect = 3e-19
Identities = 36/88 (40%), Positives = 59/88 (67%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
LFKV+L+GD GVGK+ +++R+ + F + +TIGV+F K + +DG V +QIWDTAGQ
Sbjct: 6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 65
Query: 81 ERFRTITQSYYRSANGVIIGEILCFYGT 108
ERFR++ +YR ++ ++ + +
Sbjct: 66 ERFRSLRTPFYRGSDCCLLTFSVDDSQS 93
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 70.0 bits (170), Expect = 4e-17
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
+ FKVVL+G+ VGKT +V R+ F +K T+G F K +NI GK+V L IWDTAG
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61
Query: 80 QERFRTITQSYYRSANGVII 99
QERF + YYR +NG I+
Sbjct: 62 QERFHALGPIYYRDSNGAIL 81
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 68.6 bits (166), Expect = 2e-16
Identities = 34/78 (43%), Positives = 54/78 (69%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++GD GVGKT +++++ + F + TIG DF K V +D + V +QIWDTAGQ
Sbjct: 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 81 ERFRTITQSYYRSANGVI 98
ERF+++ ++YR A+ +
Sbjct: 62 ERFQSLGVAFYRGADCCV 79
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 67.4 bits (163), Expect = 5e-16
Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKV-KLQIWDTAG 79
+ KV+++GD GVGKT ++HR+ + + ++ TIG DF K V +DG KV +Q+WDTAG
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 80 QERFRTITQSYYRSANGVIIGEILCFYGT 108
QERF+++ ++YR A+ ++ + +
Sbjct: 62 QERFQSLGVAFYRGADCCVLVYDVTNASS 90
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 66.6 bits (161), Expect = 8e-16
Identities = 41/80 (51%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
+FK+++IGD VGKTC+ +RF +G F ++T TIGVDF + V+IDG+++K+Q+WDTAGQ
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61
Query: 81 ERF-RTITQSYYRSANGVII 99
ERF +++ Q YYR+ + V+
Sbjct: 62 ERFRKSMVQHYYRNVHAVVF 81
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 66.3 bits (161), Expect = 3e-15
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
Y +++L+G GK+ +V + R V T G+ KV ++D
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIF----ETKFQVDKVNFHMFDV 54
Query: 78 AGQERFRTITQSYYRSANGVI 98
GQ R + +I
Sbjct: 55 GGQRDERRKWIQCFNDVTAII 75
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 65.4 bits (158), Expect = 3e-15
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+ K V++GD VGKTC++ + + F E+ T+ D +V + GK+ L ++D
Sbjct: 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYD 63
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQE + + Y + +I
Sbjct: 64 TAGQEDYDRLRPLSYPMTDVFLI 86
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 65.8 bits (159), Expect = 3e-15
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ D TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + ++
Sbjct: 63 DYDRLRPLSYPQTDVFLV 80
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 64.9 bits (157), Expect = 3e-15
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+KVV++G GVGK+ + +F +G F+EK TI DF K + +D L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 82 RFRTITQSYYRSANGVIIGEILC 104
+F ++ Y ++ G I+ L
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLV 85
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 64.3 bits (155), Expect = 6e-15
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+VL+G+ VGK+ +V RF S DF E TIG F + V I+ VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 83 FRTITQSYYRSANGVII 99
F ++ YYR+A ++
Sbjct: 65 FASLAPMYYRNAQAALV 81
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 63.5 bits (153), Expect = 1e-14
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++++G GKT ++++ + G+ V T ++ K + +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 83 FRTITQSYYRSANGVII 99
R + + Y+++ G+I
Sbjct: 57 IRPLWRHYFQNTQGLIF 73
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 63.1 bits (152), Expect = 2e-14
Identities = 35/78 (44%), Positives = 42/78 (53%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV L+GD GVGK+ ++ RF F TIG F KTV + K IWDTAG E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 82 RFRTITQSYYRSANGVII 99
RFR + YYR + II
Sbjct: 65 RFRALAPMYYRGSAAAII 82
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 62.3 bits (150), Expect = 4e-14
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + +F G FVEK TI D K V +D ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 82 RFRTITQSYYRSANGVIIGEILCFY 106
+F + Y ++ G + +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQ 87
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 61.9 bits (149), Expect = 7e-14
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+V++GD GKTC++ F E T+ + + + +DGK+V+L +WDTAG E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61
Query: 82 RFRTITQSYYR 92
+ + Y
Sbjct: 62 DYDRLRPLSYP 72
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 60.8 bits (146), Expect = 1e-13
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
K+V++G GVGK+ + +F FV + D K ++DG +L I DTAGQ
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDY-DPTIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 81 ERFRTITQSYYRSANGV 97
E F + + Y R+ +G
Sbjct: 65 EEFGAMREQYMRAGHGF 81
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 60.5 bits (145), Expect = 2e-13
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++G+ VGK+ ++ R+ G F + TIGVDF + + ++ + V+L +WDTAGQE
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 83 FRTITQSYYRSANGVII 99
F IT++YYR A ++
Sbjct: 64 FDAITKAYYRGAQACVL 80
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 60.4 bits (145), Expect = 2e-13
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++GD GVGK+ + +F FV TI D +K ID + L + DTAGQE
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63
Query: 82 RFRTITQSYYRSANGVIIGEILCFY 106
F + + Y R+ +G +I +
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTDK 88
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 59.6 bits (143), Expect = 5e-13
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T D K V +DG++V++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 81 ERFRTITQSYYRSANGVII 99
E + I +Y+RS G +
Sbjct: 63 EDYAAIRDNYFRSGEGFLC 81
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 59.6 bits (143), Expect = 5e-13
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT +++R + G+ V TIG + + K +KL +WD GQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV----ETLSYKNLKLNVWDLGGQT 72
Query: 82 RFRTITQSYYRSANGVII 99
R + YY VI
Sbjct: 73 SIRPYWRCYYADTAAVIF 90
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 58.5 bits (140), Expect = 1e-12
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI + + V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62
Query: 82 RFRTITQSYYRSANGVIIGEILCFYGT 108
+ + Y R+ G + + +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKS 89
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 57.7 bits (138), Expect = 2e-12
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++V++G GVGK+ + +F FV TI D K ID + +L I DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64
Query: 82 RFRTITQSYYRSANGVII 99
F + + Y R+ G ++
Sbjct: 65 EFGAMREQYMRTGEGFLL 82
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 58.1 bits (139), Expect = 2e-12
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S +DGK V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVNLGLWDTAGQE 64
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 65 DYDRLRPLSYPQTDVSLI 82
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 57.0 bits (136), Expect = 4e-12
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++ +F D +TI ++ + KL IWD GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57
Query: 82 RFRTITQSYYRSANG 96
R+ ++Y+ S +G
Sbjct: 58 SLRSYWRNYFESTDG 72
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 56.8 bits (136), Expect = 8e-12
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L K++L+G GK+ + + R + T G+ + + K V ++ D GQ
Sbjct: 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI----HEYDFEIKNVPFKMVDVGGQ 54
Query: 81 ERFRTITQSYYRSANGV 97
R + S +
Sbjct: 55 RSERKRWFECFDSVTSI 71
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 56.1 bits (134), Expect = 1e-11
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T + K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67
Query: 82 RFRTITQSYYRSANGVII 99
+ R + + YY G+I
Sbjct: 68 KIRPLWRHYYTGTQGLIF 85
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 55.9 bits (133), Expect = 1e-11
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+ ++G VGK+ + +F G FV+ TI + K + ++G++ LQ+ DTAGQ+
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63
Query: 82 RFRTITQSYYRSANGVIIGEILCFY 106
+ Q+Y NG I+ +
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSI 88
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 55.8 bits (133), Expect = 1e-11
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 82 RFRTITQSYYRSANGVII 99
+F + YY A II
Sbjct: 64 KFGGLRDGYYIQAQCAII 81
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 55.8 bits (133), Expect = 1e-11
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKT ++H F F E T+ + + ID ++++L +WDT+G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 83 FRTITQSYYRSANGVIIGEILCFYGT 108
+ + Y ++ V+I + T
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPET 88
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 55.1 bits (131), Expect = 2e-11
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K++ +G GKT ++H ++ T+ + + + +K +D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 83 FRTITQSYYRSANGVII 99
R + + Y+ NG++
Sbjct: 57 ARRLWKDYFPEVNGIVF 73
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 54.2 bits (129), Expect = 7e-11
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K++L+G GK+ + + R T G+ D + V ++ D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGSGVP--TTGIIE----YPFDLQSVIFRMVDVGGQR 56
Query: 82 RFRTITQSYYRSANGV 97
R + + +
Sbjct: 57 SERRKWIHCFENVTSI 72
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 53.1 bits (126), Expect = 1e-10
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
++V + G GVGK+ +V RF G F E T+ + LQI DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61
Query: 82 RFRTITQSYYRSANGVII 99
+F + + + I+
Sbjct: 62 QFPAMQRLSISKGHAFIL 79
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 51.9 bits (123), Expect = 3e-10
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+ + G GVGK+ +V RF + F+ + T+ ID + V ++I DT +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDT-AGQ 60
Query: 82 RFRTITQSYYRSANGVII 99
+ + R G ++
Sbjct: 61 EDTIQREGHMRWGEGFVL 78
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 51.9 bits (123), Expect = 5e-10
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
V+ +G C GKT + R +G + + T +I ++ VN + I +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 83 FRTITQSYYRSAN 95
+ + SA
Sbjct: 61 RFQLLDRFKSSAR 73
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 50.8 bits (120), Expect = 1e-09
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV+++G GKT ++++F + V I + +WD GQE
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVH-----TSPTIGSNVEEIVINNTRFLMWDIGGQE 70
Query: 82 RFRTITQSYYRSANGVII 99
R+ +YY + VI+
Sbjct: 71 SLRSSWNTYYTNTEFVIV 88
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 50.8 bits (120), Expect = 1e-09
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
++ ++GD GK+ ++HRF +G + + K + +DG+ + I + A
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEA 60
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 48.8 bits (115), Expect = 8e-09
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K++L+G GK+ +V + + G+ + K + +++D GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQR 53
Query: 82 RFRTITQSYYRSANGVII 99
R + +I
Sbjct: 54 SERKKWIHCFEGVTAIIF 71
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 47.8 bits (112), Expect = 1e-08
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT +++R + G+ V T + K +K Q+WD G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60
Query: 82 RFRTITQSYYRSANGVIIGEILCFY 106
R + YY + + VI C
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDR 85
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 47.4 bits (111), Expect = 2e-08
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+KV+L+G GVGK+ + F + + +++ +DG++ L ++D Q+
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59
Query: 82 RFRTITQSYYRSANGVIIGEILCFY 106
R + + +I +
Sbjct: 60 GGRWLPGHCMAMGDAYVIVYSVTDK 84
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 46.9 bits (110), Expect = 3e-08
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++L+G GKT ++ + S D T T G ++ + KL +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG----FNIKSVQSQGFKLNVWDIGGQR 71
Query: 82 RFRTITQSYYRSANGVII 99
+ R +SY+ + + +I
Sbjct: 72 KIRPYWRSYFENTDILIY 89
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 46.7 bits (109), Expect = 3e-08
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
+ ++VVLIG+ GVGK+ + + F ++ +G D +T+ +DG+ + + D
Sbjct: 1 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60
Query: 78 AGQERFRTITQSYY 91
+ +
Sbjct: 61 WENKGENEWLHDHC 74
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 45.1 bits (105), Expect = 1e-07
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
++ L+G GKT V+ SG F E T+G + I V +++WD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 58
Query: 82 RFRTITQSYY 91
RFR++ + Y
Sbjct: 59 RFRSMWERYC 68
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 43.1 bits (100), Expect = 9e-07
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
+++ G GKT ++ + T+ + + DG V + D G +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPGHVKL 59
Query: 84 RTITQSYY 91
R Y
Sbjct: 60 RYKLSDYL 67
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 41.6 bits (96), Expect = 3e-06
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+V +G GKT ++H + + + + + +D G
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTIAGMTFTTFDLGGHI 68
Query: 82 RFRTITQSYYRSANGVII 99
+ R + ++Y + NG++
Sbjct: 69 QARRVWKNYLPAINGIVF 86
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 35.5 bits (80), Expect = 4e-04
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KVV+ G GK+ +++ +G + G + +I + L I DTAG
Sbjct: 2 MKVVIAGRPNAGKSSLLNAL-AGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60
Query: 82 RFRTITQSYYR 92
+
Sbjct: 61 EASDEVERIGI 71
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 33.6 bits (76), Expect = 0.003
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVN--IDGKKVKLQIWDTAG 79
V + G+ G GK+ ++ R E+ GV + + WD G
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116
Query: 80 QERFRTITQSYYR 92
+Y
Sbjct: 117 IGSTNFPPDTYLE 129
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 33.5 bits (76), Expect = 0.003
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 24 VVLIGDCGVGKTCVVH----RFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
VLIG+ GVGKT +V R GD E V M G + +
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM------GSLLAGAKYRGEF 99
Query: 80 QERFRTITQSYYRSANGVI--IGEILCFYGT 108
+ER + + Q +S VI I E+ G
Sbjct: 100 EERLKAVIQEVVQSQGEVILFIDELHTVVGA 130
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 31.2 bits (69), Expect = 0.017
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV ++G VGK+ + + G + K DTAG
Sbjct: 9 IKVAIVGRPNVGKSTLFNAI-LNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67
Query: 82 RFRTITQSYY 91
R +
Sbjct: 68 RKSRVEPRTV 77
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 30.3 bits (67), Expect = 0.024
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
++V++G VGK+ +++R + + G + + I + + +I DTAG
Sbjct: 2 RMVIVGKPNVGKSTLLNRL-LNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG 57
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 30.5 bits (67), Expect = 0.027
Identities = 10/73 (13%), Positives = 24/73 (32%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D +V G GK+ ++ + + +T T G + + K + +
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73
Query: 79 GQERFRTITQSYY 91
E + + +
Sbjct: 74 YAEVPEEMKRKWQ 86
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.6 bits (62), Expect = 0.11
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
V ++G VGK+ +++ G V + + ++ D
Sbjct: 8 VAIVGKPNVGKSTLLNNLL-GVKVAPISPRPQTTRKRLRGILTEGRRQIVFVD 59
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.9 bits (61), Expect = 0.26
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
++++G GVGK+ V+ G+ V V+ L I DT
Sbjct: 33 LTILVMGKGGVGKSSTVNSI-IGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDT 87
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.4 bits (59), Expect = 0.29
Identities = 9/71 (12%), Positives = 30/71 (42%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L ++ L G VGK+ ++ + + +T + G ++ I+ + + +
Sbjct: 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82
Query: 81 ERFRTITQSYY 91
+ ++ +++
Sbjct: 83 KVSKSEREAWG 93
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 26.6 bits (57), Expect = 0.51
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
V+++G VGK+ + ++ + GV ++ ++ DT G
Sbjct: 3 VLIVGRPNVGKSTLFNKL-VKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61
Query: 84 RTITQSYY 91
S
Sbjct: 62 PQDIISQK 69
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 25.6 bits (55), Expect = 1.1
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 8/32 (25%)
Query: 10 PNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRF 41
P +FQ L G GK+ V
Sbjct: 5 PQSFQ--------VAHLHAPTGSGKSTKVPAA 28
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.9 bits (55), Expect = 1.2
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 24 VVLIGDCGVGKTCVVHRF 41
+++G GK+ ++
Sbjct: 32 TLVLGLRRTGKSSIIKIG 49
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.6 bits (55), Expect = 1.4
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 5/100 (5%)
Query: 1 MSSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSM 60
++ + + + K + S + G +F +
Sbjct: 116 VTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKL 175
Query: 61 KTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIG 100
T I + + Q R T Q+ + ++IG
Sbjct: 176 VTPGIRPQGSE-----AGDQRRIMTPEQALSAGVDYMVIG 210
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 25.4 bits (54), Expect = 1.4
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
V L+G GK+ ++ T+ + + V+ + + + D G
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE---RFTLADIPG 58
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 25.4 bits (55), Expect = 1.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 24 VVLIGDCGVGKTCVVHRF 41
+L+G+ GVGKT +
Sbjct: 42 PLLVGESGVGKTAIAEGL 59
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 25.0 bits (53), Expect = 2.2
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
++ G VGK+ +++R + G GV + + +I D G
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKV--RRGKRPGVTRKIIEIEWKNH----KIIDMPGFGFM 56
Query: 84 RTITQSYY 91
+ +
Sbjct: 57 MGLPKEVQ 64
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.2 bits (53), Expect = 2.3
Identities = 8/59 (13%), Positives = 18/59 (30%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
L+G G GKT + + + T + ++ + + + R
Sbjct: 46 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRR 104
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 24.1 bits (52), Expect = 2.9
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 41 FRSGDFVEKTGNTIGVDFSMKTVNID----GKKVKLQIWDTAGQERFRTIT 87
G V K + + G V L D +G R +T
Sbjct: 34 VPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPSGGSRTVQVT 84
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 24.6 bits (52), Expect = 2.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 23 KVVLIGDCGVGKTCV 37
K VL+G G GK+ +
Sbjct: 3 KAVLVGLPGSGKSTI 17
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 24.1 bits (51), Expect = 3.6
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 20 FLFKVVLIGDCGVGKTCVVHR---------FRSGDFVEKTGNTIGVDFSMKTVNIDGKKV 70
L ++L G GVGKT + GD + G D +D +V
Sbjct: 3 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRV 62
Query: 71 KLQIWD 76
++ +
Sbjct: 63 VDELDN 68
>d1vpza_ b.151.1.1 (A:) Carbon storage regulator homolog, CsrA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 57
Score = 23.0 bits (50), Expect = 3.6
Identities = 4/21 (19%), Positives = 13/21 (61%)
Query: 54 IGVDFSMKTVNIDGKKVKLQI 74
+G D ++ + + G +V++ +
Sbjct: 16 VGDDVTVTVLGVKGNQVRIGV 36
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 24.1 bits (51), Expect = 3.7
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKT 62
VVL G G GK+ ++ + ++ + G S T
Sbjct: 3 VVLSGPSGAGKSTLLKKLF-----QEHSSIFGFSVSHTT 36
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 126
Score = 23.8 bits (51), Expect = 4.7
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 60 MKTVNIDGKKVK 71
MKT+ I+G +
Sbjct: 1 MKTIIINGVQFN 12
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia
coli [TaxId: 562]}
Length = 168
Score = 24.0 bits (52), Expect = 4.7
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
V+L D + E+ + + + VN K+V++ +
Sbjct: 30 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCISVVNALSKRVEVNVR 82
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 23.8 bits (50), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 24 VVLIGDCGVGKTCVVHRFRS 43
VVL G VGK+ VV R
Sbjct: 5 VVLSGPSAVGKSTVVRCLRE 24
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 23.8 bits (50), Expect = 5.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 23 KVVLIGDCGVGKT 35
K+++ G+ GVGKT
Sbjct: 2 KIIITGEPGVGKT 14
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 24.0 bits (51), Expect = 5.6
Identities = 12/68 (17%), Positives = 21/68 (30%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
+++IG GVGKT + R + V + + + D+AG
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID 111
Query: 84 RTITQSYY 91
Sbjct: 112 AVEQNGIV 119
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 23.7 bits (50), Expect = 5.7
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 24 VVLIGDCGVGKTCVVHRFRS 43
+V+ G G GK+ ++ + +
Sbjct: 4 IVISGPSGTGKSTLLKKLFA 23
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 23.6 bits (50), Expect = 5.8
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGD 45
++ G GK+ ++
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQ 26
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 23.5 bits (50), Expect = 5.8
Identities = 13/78 (16%), Positives = 24/78 (30%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
V L GD G GKT + G + + + ++ A E
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEEL 95
Query: 84 RTITQSYYRSANGVIIGE 101
+ Y + + + + E
Sbjct: 96 EFMGIRDYFNTDSICLIE 113
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 23.5 bits (50), Expect = 6.2
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRF------RSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ G GVGK+ +++ R + EK + + + D +
Sbjct: 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVV 152
Query: 76 DTAG 79
DT G
Sbjct: 153 DTPG 156
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 23.7 bits (50), Expect = 6.8
Identities = 9/69 (13%), Positives = 17/69 (24%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
V+L G GKT + + + + +K D +
Sbjct: 43 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 102
Query: 84 RTITQSYYR 92
+ R
Sbjct: 103 CVVVDDIER 111
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 23.3 bits (49), Expect = 8.3
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 24 VVLIGDCGVGKTCVVHRFRS 43
+VL+G GVG+ + + +
Sbjct: 6 LVLLGAHGVGRRHIKNTLIT 25
>d2cnza1 b.2.3.2 (A:22-144) SafA pilus subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 123
Score = 23.0 bits (49), Expect = 8.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 50 TGNTIGVDFSMKTVNIDGKKVK 71
TG IGV S ++ K
Sbjct: 60 TGKEIGVGLSSDSLRRSDSTEK 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 423,528
Number of extensions: 18019
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 104
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)