BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5772
(654 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 12/217 (5%)
Query: 367 WCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNIL 426
WC D LDT+ ERK Q ELI +E Y L ++ + F + + L
Sbjct: 82 WC-----ADLQTLDTMQPIERKRQGYIHELIQTEERYMADLQLVVEVF--QKRMAESGFL 134
Query: 427 SKNDRKHLFGNVTAVRKCSERLLAAL---EQCWQDSILLTNICEIVYQHVTNKSFNIYIK 483
++ + +F N + + +LL AL ++ + + + I +I+ +++ YI+
Sbjct: 135 TEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSH--MQAYIR 192
Query: 484 YCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDA 543
+CS Q + L+ + + F E L +L SDP C+ + L SFL+ PMQR+TR PLL +
Sbjct: 193 FCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRS 252
Query: 544 ILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKME 580
IL +H+++ + L ++ + NE R+ E
Sbjct: 253 ILENTPESHADHSSLKLALERAEELCSQVNEGVREKE 289
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
L SDP C+ + L SFL+ PMQR+TR PLL +IL +H+++ + L ++ +
Sbjct: 221 LASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQ 280
Query: 70 CNEEARKME 78
NE R+ E
Sbjct: 281 VNEGVREKE 289
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 7/204 (3%)
Query: 380 DTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVT 439
D L ERK Q ELI +E +Y L ++ + F PL++ +L++ + +F N
Sbjct: 1 DMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLMES-ELLTEKEVAMIFVNWK 58
Query: 440 AVRKCSERLLAAL---EQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLK 496
+ C+ +LL AL ++ + + + I +I+ + + YI++CS Q + ++
Sbjct: 59 ELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH--MQPYIRFCSRQLNGAALIQ 116
Query: 497 SLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYE 556
+ P F E + LE DP C+ + L SF++ PMQRVTR PL+ IL NH ++
Sbjct: 117 QKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHS 176
Query: 557 TCHTTLATLNKIVHECNEEARKME 580
L ++ + NE R+ E
Sbjct: 177 HLKHALEKAEELCSQVNEGVREKE 200
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
LE DP C+ + L SF++ PMQRVTR PL+ IL NH ++ L ++ +
Sbjct: 132 LEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQ 191
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARK 129
NE R+ E S +++ V+C + S LV + N + K + K
Sbjct: 192 VNEGVREKEN-------SDRLEWIQAHVQCEGL---SEQLVFNSVTNCLG-PRKFLHSGK 240
Query: 130 LNKTHFYAKLNLFLFTDLLVITK 152
L K +L FLF D L++T+
Sbjct: 241 LYKAKNNKELYGFLFNDFLLLTQ 263
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 12/217 (5%)
Query: 367 WCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNIL 426
WC D +LD L ERK Q ELI +E +Y L ++ + F PL + +L
Sbjct: 66 WCS-----DLHLLDMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLTES-ELL 118
Query: 427 SKNDRKHLFGNVTAVRKCSERLLAAL---EQCWQDSILLTNICEIVYQHVTNKSFNIYIK 483
++ + +F N + C+ +LL AL ++ + + + I +I+ + + YI+
Sbjct: 119 TEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH--MQPYIR 176
Query: 484 YCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDA 543
+CS Q + ++ + P F E + L DP C+ + L SF++ PMQRVTR PL+
Sbjct: 177 FCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKN 236
Query: 544 ILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKME 580
IL NH ++ L ++ + NE R+ E
Sbjct: 237 ILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKE 273
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
L DP C+ + L SF++ PMQRVTR PL+ IL NH ++ L ++ +
Sbjct: 205 LAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQ 264
Query: 70 CNEEARKME 78
NE R+ E
Sbjct: 265 VNEGVREKE 273
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 130/273 (47%), Gaps = 18/273 (6%)
Query: 380 DTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVT 439
DT+ ERK Q ELI +E Y L ++ + F + + L++ + +F N
Sbjct: 19 DTMQPIERKRQGYIHELIQTEERYMADLQLVVEVF--QKRMAESGFLTEGEMALIFVNWK 76
Query: 440 AVRKCSERLLAAL---EQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLK 496
+ + +LL AL ++ + + + I +I+ +++ YI++CS Q + L+
Sbjct: 77 ELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSH--MQAYIRFCSCQLNGAALLQ 134
Query: 497 SLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYE 556
+ + F E L +L SDP C+ + L SFL+ PMQR+TR PLL +IL +H+++
Sbjct: 135 QKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHS 194
Query: 557 TCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGS 616
+ L ++ + NE R+ E S +++ V+C + + L+ +
Sbjct: 195 SLKLALERAEELCSQVNEGVREKEN-------SDRLEWIQAHVQCEGL---AEQLIFNSL 244
Query: 617 MNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
N + K+ + KL KT +L+ FLF D
Sbjct: 245 TNCLG-PRKLLHSGKLYKTKSNKELHGFLFNDF 276
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
L SDP C+ + L SFL+ PMQR+TR PLL +IL +H+++ + L ++ +
Sbjct: 150 LASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQ 209
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARK 129
NE R+ E S +++ V+C + + L+ + N + K+ + K
Sbjct: 210 VNEGVREKEN-------SDRLEWIQAHVQCEGL---AEQLIFNSLTNCLG-PRKLLHSGK 258
Query: 130 LNKTHFYAKLNLFLFTDLLVIT 151
L KT +L+ FLF D L++T
Sbjct: 259 LYKTKSNKELHGFLFNDFLLLT 280
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 7/204 (3%)
Query: 380 DTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVT 439
D L ERK Q ELI +E +Y L ++ + F PL++ +L++ + +F N
Sbjct: 1 DMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLMES-ELLTEKEVAMIFVNWK 58
Query: 440 AVRKCSERLLAAL---EQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLK 496
+ C+ +LL AL ++ + + + I +I+ + + YI++CS Q + ++
Sbjct: 59 ELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH--MQPYIRFCSRQLNGAALIQ 116
Query: 497 SLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYE 556
+ P F E + L DP C+ + L F++ PMQRVTR PL+ IL NH ++
Sbjct: 117 QKTDEAPDFKEFVKRLAMDPRCKGMPLSEFILKPMQRVTRYPLIIKNILENTPENHPDHS 176
Query: 557 TCHTTLATLNKIVHECNEEARKME 580
L ++ + NE R+ E
Sbjct: 177 HLKHALEKAEELCSQVNEGVREKE 200
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
L DP C+ + L F++ PMQRVTR PL+ IL NH ++ L ++ +
Sbjct: 132 LAMDPRCKGMPLSEFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQ 191
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARK 129
NE R+ E S +++ V+C + S LV + N + K + K
Sbjct: 192 VNEGVREKEN-------SDRLEWIQAHVQCEGL---SEQLVFNSVTNCLG-PRKFLHSGK 240
Query: 130 LNKTHFYAKLNLFLFTDLLVITK 152
L K +L FLF D L++T+
Sbjct: 241 LYKAKSNKELYGFLFNDFLLLTQ 263
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 146/373 (39%), Gaps = 51/373 (13%)
Query: 290 NSSTPGATSNSDSMSDPGSDLHLRFIDEPLYQFYNACIAELQFNEGSVENGYE---EIG- 345
++ PGAT + P D R I P + L + E G + E+G
Sbjct: 56 DAEKPGATDRKGGVGMPSRD---RNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGD 112
Query: 346 SSPMRTSMLEIIAPPH-MNRSLWCQLPEVIDSG------------------------VLD 380
SSP LE +APP + + PE D G L
Sbjct: 113 SSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEPPGWRELVPPDTLH 172
Query: 381 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 440
+L + K QE EL+ +EA++ + L VL F + + + +++F ++
Sbjct: 173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEELQNIFPSLDE 230
Query: 441 VRKCSERLLAALEQCWQDS-ILLTNICEIVYQHVTNKSFNIYIK----YCSNQFHIDRTL 495
+ + L L + Q+S L+ I +++ + + K +CS Q L
Sbjct: 231 LIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQL 290
Query: 496 KSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEY 555
K+ + +P+F + E ES P C+ L L + MQR+T+ PLL +I +E
Sbjct: 291 KAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPTER 349
Query: 556 ETCHTTLATLNKIVHECNEEARKME------RYYEMLLLSRLIKFS---LKEVKCLPVIS 606
E +I+H N+ R ME Y L LS L + S L E K L +
Sbjct: 350 EKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDI-- 407
Query: 607 SSRWLVRSGSMNF 619
+ + LV G + +
Sbjct: 408 TKKKLVHEGPLTW 420
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 70
ES P C+ L L + MQR+T+ PLL +I +E E +I+H
Sbjct: 308 ESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPTEREKVELAAECCREILHHV 366
Query: 71 NEEARKME------RYYEMLLLSRLIKFS---LKEVKCLPVISSSRWLVRSGSMNF 117
N+ R ME Y L LS L + S L E K L + + + LV G + +
Sbjct: 367 NQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDI--TKKKLVHEGPLTW 420
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 9/189 (4%)
Query: 395 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 454
E++++E Y K L + + ++ ++ S+ + +FGN+ + +C + + ALEQ
Sbjct: 125 EILSTERDYIKHLRDICEGYV-RQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQ 183
Query: 455 CW-QDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPK--FIEALTE 511
+ ++ L+ + +H + F IY +YC+N + L L + + F EA
Sbjct: 184 RFNRERPHLSELGACFLEHQAD--FQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRL 241
Query: 512 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 571
L+ +SL FL+ P+Q++ + PL +L P H +++ L + +
Sbjct: 242 LQK---MIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQL 298
Query: 572 CNEEARKME 580
NE R++E
Sbjct: 299 INERKRRLE 307
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 18 SLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKM 77
+SL FL+ P+Q++ + PL +L P H +++ L + + NE R++
Sbjct: 247 DISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRL 306
Query: 78 E 78
E
Sbjct: 307 E 307
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 6/205 (2%)
Query: 380 DTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVT 439
++L E + QEA +E+ E + L + K + P+L ++I+S+ + H+FG++
Sbjct: 24 ESLTTREIRRQEAIYEMSRGEQDLIEDLKLARKAY-HDPMLK-LSIMSEEELTHIFGDLD 81
Query: 440 AVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLR 499
+ E LL + + + + I I+ + N Y YCSNQ + L +
Sbjct: 82 SYIPLHEDLLTRIGEATKPDGTVEQIGHILVSWLPR--LNAYRGYCSNQLAA-KALLDQK 138
Query: 500 ETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCH 559
+ +P+ + L P + L L SFL +P R+ + PLL IL H + +
Sbjct: 139 KQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLE 198
Query: 560 TTLATLNKIVHECNEEARKME-RYY 583
+ + ++ + N + + E +YY
Sbjct: 199 DAILIIQGVLSDINLKKGESECQYY 223
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
LES P + L L SFL +P R+ + PLL IL H + + + + ++ +
Sbjct: 152 LES-PFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLEDAILIIQGVLSD 210
Query: 70 CNEEARKME-RYY 81
N + + E +YY
Sbjct: 211 INLKKGESECQYY 223
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 14/225 (6%)
Query: 373 VIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRK 432
+ V+ L E QE EL +EAS+ ++L VL+ I + N++ + +
Sbjct: 48 TVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLD--LIFYQRMKKENLMPREELA 105
Query: 433 HLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSF----NIYIKYCSNQ 488
LF N+ + + A+++ ++ ++ I +++ + + ++CS Q
Sbjct: 106 RLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQ 165
Query: 489 FHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRL 548
+K+ + +F + E ES P C+ L L ++ MQR+T+ PLL ++I+
Sbjct: 166 SIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHT 225
Query: 549 RPNHSEYE-------TCHTTLATLNKIVHECNEEARKMERYYEML 586
SE+E C L +N+ V + E ++E Y + L
Sbjct: 226 EGGTSEHEKLCRARDQCREILKYVNEAVKQ-TENRHRLEGYQKRL 269
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYE-------TCHTTLATL 63
ES P C+ L L ++ MQR+T+ PLL ++I+ SE+E C L +
Sbjct: 190 ESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYV 249
Query: 64 NKIVHECNEEARKMERYYEML 84
N+ V + E ++E Y + L
Sbjct: 250 NEAVKQ-TENRHRLEGYQKRL 269
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 9/189 (4%)
Query: 395 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 454
E++++E Y K L + + ++ + S+ + +FGN+ + +C + + ALEQ
Sbjct: 162 EILSTERDYIKHLRDICEGYV-RQCRKRADXFSEEQLRTIFGNIEDIYRCQKAFVKALEQ 220
Query: 455 CW-QDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPK--FIEALTE 511
+ ++ L+ + +H + F IY +YC+N + L L + + F EA
Sbjct: 221 RFNRERPHLSELGACFLEHQAD--FQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRL 278
Query: 512 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 571
L+ +SL FL+ P+Q++ + PL +L P H +++ L +
Sbjct: 279 LQKXI---DISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAXKNVAQL 335
Query: 572 CNEEARKME 580
NE R++E
Sbjct: 336 INERKRRLE 344
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 18 SLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKM 77
+SL FL+ P+Q++ + PL +L P H +++ L + NE R++
Sbjct: 284 DISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAXKNVAQLINERKRRL 343
Query: 78 E 78
E
Sbjct: 344 E 344
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 14/225 (6%)
Query: 373 VIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRK 432
+ V+ L E QE EL +EAS+ ++L VL+ I + N++ + +
Sbjct: 11 TVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLD--LIFYQRMKKENLMPREELA 68
Query: 433 HLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSF----NIYIKYCSNQ 488
LF N+ + + A+++ ++ ++ I +++ + + ++CS Q
Sbjct: 69 RLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQ 128
Query: 489 FHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRL 548
+K+ + +F + E ES P C+ L L ++ MQR+T+ PLL ++I+
Sbjct: 129 SIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHT 188
Query: 549 RPNHSEYE-------TCHTTLATLNKIVHECNEEARKMERYYEML 586
SE+E C L +N+ V + E ++E Y + L
Sbjct: 189 EGGTSEHEKLCRARDQCREILKYVNEAVKQ-TENRHRLEGYQKRL 232
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYE-------TCHTTLATL 63
ES P C+ L L ++ MQR+T+ PLL ++I+ SE+E C L +
Sbjct: 153 ESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYV 212
Query: 64 NKIVHECNEEARKMERYYEML 84
N+ V + E ++E Y + L
Sbjct: 213 NEAVKQ-TENRHRLEGYQKRL 232
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 113/262 (43%), Gaps = 19/262 (7%)
Query: 372 EVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR 431
E++ L +L + K QE EL+ +EA++ + L VL F + + +
Sbjct: 51 ELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEEL 108
Query: 432 KHLFGNVTAVRKCSERLLAALEQCWQDS-ILLTNICEIVYQHVTNKSFNIYIK----YCS 486
+++F ++ + + L L + Q+S L+ I +++ + + K +CS
Sbjct: 109 QNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS 168
Query: 487 NQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILT 546
Q LK+ + +P+F + E ES P C+ L L + MQR+T+ PLL +I
Sbjct: 169 RQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQ 228
Query: 547 RLRPNHSEYETCHTTLATLNKIVHECNEEARKME------RYYEMLLLSRLIKFS---LK 597
+E E +I+H N+ R ME Y L LS L + S L
Sbjct: 229 NTE-EPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLS 287
Query: 598 EVKCLPVISSSRWLVRSGSMNF 619
E K L + + + LV G + +
Sbjct: 288 EFKNLDI--TKKKLVHEGPLTW 307
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 70
ES P C+ L L + MQR+T+ PLL +I +E E +I+H
Sbjct: 195 ESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPTEREKVELAAECCREILHHV 253
Query: 71 NEEARKME------RYYEMLLLSRLIKFS---LKEVKCLPVISSSRWLVRSGSMNF 117
N+ R ME Y L LS L + S L E K L + + + LV G + +
Sbjct: 254 NQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDI--TKKKLVHEGPLTW 307
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 14/225 (6%)
Query: 373 VIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRK 432
+ V+ L E QE EL +EAS+ ++L VL+ I + N++ + +
Sbjct: 6 TVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLD--LIFYQRMKKENLMPREELA 63
Query: 433 HLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSF----NIYIKYCSNQ 488
LF N+ + + A+++ ++ ++ I +++ + + ++CS Q
Sbjct: 64 RLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQ 123
Query: 489 FHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRL 548
+K+ + +F + E ES P C+ L L ++ MQR+T+ PLL ++I+
Sbjct: 124 SIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHT 183
Query: 549 RPNHSEYE-------TCHTTLATLNKIVHECNEEARKMERYYEML 586
SE+E C L +N+ V + E ++E Y + L
Sbjct: 184 EGGTSEHEKLCRARDQCREILKYVNEAVKQ-TENRHRLEGYQKRL 227
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYE-------TCHTTLATL 63
ES P C+ L L ++ MQR+T+ PLL ++I+ SE+E C L +
Sbjct: 148 ESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYV 207
Query: 64 NKIVHECNEEARKMERYYEML 84
N+ V + E ++E Y + L
Sbjct: 208 NEAVKQ-TENRHRLEGYQKRL 227
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 39/254 (15%)
Query: 358 APPHMNRSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIAS 417
+PP+ W QL + VL L E K QE EL +E ++ ++L VL++ F
Sbjct: 2 SPPN-----WQQL---VSREVLLGLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQR 53
Query: 418 PLLDDVNILSKNDRKHLFGN--------------VTAVRKCSERLLAALEQCWQDSILLT 463
+ ILS ++ + +F N + AVRK +E + ++Q +D LLT
Sbjct: 54 --VSREGILSPSELRKIFSNLEDILQLHIGLNEQMKAVRKRNE--TSVIDQIGED--LLT 107
Query: 464 NICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSL 523
+ + + + +CSNQ +KS ++ + +F + + ES+P+C+ L L
Sbjct: 108 WFSGPGEEKLKHAAAT----FCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQL 163
Query: 524 HSFLMLPMQRVTRLPLLFDAIL------TRLRPNHSEYETCHTTLATLNKIVHECNEEAR 577
+ MQR+T+ PLL D I T + C L +N+ V E E +
Sbjct: 164 KDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQAVKEA-ENKQ 222
Query: 578 KMERYYEMLLLSRL 591
++E Y L S L
Sbjct: 223 RLEDYQRRLDTSSL 236
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAIL------TRLRPNHSEYETCHTTLATLN 64
ES+P+C+ L L + MQR+T+ PLL D I T + C L +N
Sbjct: 153 ESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVN 212
Query: 65 KIVHECNEEARKMERYYEMLLLSRL 89
+ V E E +++E Y L S L
Sbjct: 213 QAVKEA-ENKQRLEDYQRRLDTSSL 236
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 8/214 (3%)
Query: 372 EVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR 431
E++ L +L + K QE EL+ +EA++ + L VL F + + +
Sbjct: 11 ELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEEL 68
Query: 432 KHLFGNVTAVRKCSERLLAALEQCWQDS-ILLTNICEIVYQHVTNKSFNIYIK----YCS 486
+++F ++ + + L L + Q+S L+ I +++ + + K +CS
Sbjct: 69 QNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS 128
Query: 487 NQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILT 546
Q LK+ + +P+F + E ES P C+ L L + MQR+T+ PLL +I
Sbjct: 129 RQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQ 188
Query: 547 RLRPNHSEYETCHTTLATLNKIVHECNEEARKME 580
+E E +I+H N+ R ME
Sbjct: 189 NTE-EPTEREKVELAAECCREILHHVNQAVRDME 221
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 70
ES P C+ L L + MQR+T+ PLL +I +E E +I+H
Sbjct: 155 ESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPTEREKVELAAECCREILHHV 213
Query: 71 NEEARKME 78
N+ R ME
Sbjct: 214 NQAVRDME 221
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 8/214 (3%)
Query: 372 EVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR 431
E++ L +L + K QE EL+ +EA++ + L VL F + + +
Sbjct: 9 ELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEEL 66
Query: 432 KHLFGNVTAVRKCSERLLAALEQCWQDS-ILLTNICEIVYQHVTNKSFNIYIK----YCS 486
+++F ++ + + L L + Q+S L+ I +++ + + K +CS
Sbjct: 67 QNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS 126
Query: 487 NQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILT 546
Q LK+ + +P+F + E ES P C+ L L + MQR+T+ PLL +I
Sbjct: 127 RQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQ 186
Query: 547 RLRPNHSEYETCHTTLATLNKIVHECNEEARKME 580
+E E +I+H N+ R ME
Sbjct: 187 NTE-EPTEREKVELAAECCREILHHVNQAVRDME 219
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 70
ES P C+ L L + MQR+T+ PLL +I +E E +I+H
Sbjct: 153 ESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPTEREKVELAAECCREILHHV 211
Query: 71 NEEARKME 78
N+ R ME
Sbjct: 212 NQAVRDME 219
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 117/273 (42%), Gaps = 28/273 (10%)
Query: 378 VLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGN 437
V L A E K QEA FEL E + L + +K + P L ++I ++ + +FG
Sbjct: 9 VNQVLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAY-HDPXLK-LSIXTEQELNQIFGT 66
Query: 438 VTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKS 497
+ ++ E LL+ L + ++ I+ + + Y YCSNQ + L
Sbjct: 67 LDSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGWLP--CLSSYDSYCSNQVAA-KALLD 123
Query: 498 LRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYET 557
++ + + + L P + L L +FL +P R+ + PLL IL ++ + +
Sbjct: 124 HKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQH 183
Query: 558 CHTTLATLNKIVHECNEEARKME-RYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGS 616
+ + IV E N + + E RYY+ LL L+E + +I SSR L G
Sbjct: 184 LEEAINIIQGIVAEINTKTGESECRYYKERLL------YLEEGQKDSLIDSSRVLCCHGE 237
Query: 617 MNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
+ K + KL++FLF ++
Sbjct: 238 L----------------KNNRGVKLHVFLFQEV 254
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 24/144 (16%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
LES P + L L +FL +P R+ + PLL IL ++ + + + + IV E
Sbjct: 139 LES-PFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAE 197
Query: 70 CNEEARKME-RYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFAR 128
N + + E RYY+ LL L+E + +I SSR L G +
Sbjct: 198 INTKTGESECRYYKERLL------YLEEGQKDSLIDSSRVLCCHGEL------------- 238
Query: 129 KLNKTHFYAKLNLFLFTDLLVITK 152
K + KL++FLF ++LVIT+
Sbjct: 239 ---KNNRGVKLHVFLFQEVLVITR 259
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 13/191 (6%)
Query: 395 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 454
E++++E Y K L + + ++ ++ S K +FGN+ + + + LE+
Sbjct: 48 EIMSTERHYIKHLKDICEGYLKQ-CRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEK 106
Query: 455 CWQ-DSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTL---KSLRETNPK-FIEAL 509
+ D L+ I +H F IY +YC+N H+D + K ++++ + F EA
Sbjct: 107 QYNNDDPHLSEIGPCFLEH--QDGFWIYSEYCNN--HLDACMELSKLMKDSRYQHFFEAC 162
Query: 510 TELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIV 569
L+ +++ FL+ P+Q++ + PL +L +HS+Y LA + +
Sbjct: 163 RLLQQ---MIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVT 219
Query: 570 HECNEEARKME 580
+ NE R++E
Sbjct: 220 QQINERKRRLE 230
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 18 SLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKM 77
+++ FL+ P+Q++ + PL +L +HS+Y LA + + + NE R++
Sbjct: 170 DIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRL 229
Query: 78 ERYYEMLLLSRLIKF--SLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHF 135
E + ++ ++ S+ + + ++ S L+ +G M ++ + R +
Sbjct: 230 EN------IDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIY----QPYGRNQQRV-- 277
Query: 136 YAKLNLFLFTDLLVITKK 153
FLF +V+ KK
Sbjct: 278 -----FFLFDHQMVLCKK 290
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 23/210 (10%)
Query: 388 KLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER 447
KL++ EL+ +E +Y K L L + ++ PL + L++++ LFGN+T +
Sbjct: 11 KLRKVICELLETERTYVKDLNCLXERYL-KPLQKE-TFLTQDELDVLFGNLTEXVEFQVE 68
Query: 448 LLAALEQCWQDSILLTNICEIVYQHVTNKS---------------FNIYIKYCSNQFHID 492
L LE D + L E + + K F +Y +C++ +
Sbjct: 69 FLKTLE----DGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVP 124
Query: 493 RTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNH 552
+ L + T+ F +A + ++ S +L S+L+ P+QRV + PLL +
Sbjct: 125 KVLVKAK-TDTAF-KAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAES 182
Query: 553 SEYETCHTTLATLNKIVHECNEEARKMERY 582
E+ + T NK+ NE + E +
Sbjct: 183 EEHYHLDVAIKTXNKVASHINEXQKIHEEF 212
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 18 SLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKM 77
S +L S+L+ P+QRV + PLL + E+ + T NK+ NE +
Sbjct: 150 SSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTXNKVASHINEXQKIH 209
Query: 78 ERY 80
E +
Sbjct: 210 EEF 212
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 395 ELITSEASYFKSLTVLEKHFIA---SPLLDD-VNILSKNDRKHLFGNVTAVRKCSERL-L 449
EL+ +E +Y + L + + + A +PL+ ++ +N + LFGN+ + R+ L
Sbjct: 18 ELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFL 77
Query: 450 AALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEAL 509
LE C D L C + + F IY KYC N+ + + + P F E
Sbjct: 78 RELESCI-DCPELVGRCFLERM----EEFQIYEKYCQNKPRSESLWRQCSDC-PFFQECQ 131
Query: 510 TELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAIL 545
+L+ LSL S+L+ P+QR+T+ LL +L
Sbjct: 132 KKLD-----HKLSLDSYLLKPVQRITKYQLLLKEML 162
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 395 ELITSEASYFKSLTVLEKHFIA---SPLLDD-VNILSKNDRKHLFGNVTAVRKCSERL-L 449
EL+ +E +Y + L + + + A +PL+ ++ +N + LFGN+ + R+ L
Sbjct: 18 ELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFL 77
Query: 450 AALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEAL 509
LE C D L C + + F IY KYC N+ + + + P F E
Sbjct: 78 RELESCI-DCPELVGRCFLERM----EEFQIYEKYCQNKPRSESLWRQCSDC-PFFQECQ 131
Query: 510 TELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAIL 545
+L+ LSL S+L+ P+QR+T+ LL +L
Sbjct: 132 KKLD-----HKLSLDSYLLKPVQRITKYQLLLKEML 162
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 395 ELITSEASYFKSLTVLEKHFIA---SPLLDD-VNILSKNDRKHLFGNVTAVRKCSERL-L 449
EL+ +E +Y + L + + + A +PL+ ++ +N + LFGN+ + R+ L
Sbjct: 18 ELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFL 77
Query: 450 AALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEAL 509
LE C D L C + + F IY KYC N+ + + + P F E
Sbjct: 78 RELESCI-DCPELVGRCFLERM----EEFQIYEKYCQNKPRSESLWRQCSDC-PFFQECQ 131
Query: 510 TELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAIL 545
+L+ LSL S+L+ P+QR+T+ LL +L
Sbjct: 132 KKLD-----HKLSLDSYLLKPVQRITKYQLLLKEML 162
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 32/164 (19%)
Query: 395 ELITSEASYFKSL-TVLEK-----------HFIASPLLDDVNILSKNDRKHLFGNVTAVR 442
EL+ +E +Y + L VLE H I++ L + NIL FGN +
Sbjct: 18 ELLDTERAYVEELLCVLEGYAAEXDNPLXAHLISTGLQNKKNIL--------FGNXEEIY 69
Query: 443 KCSERL-LAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRET 501
R+ L LE C D L C + + F IY KYC N+ + + +
Sbjct: 70 HFHNRIFLRELESCI-DCPELVGRCFLE----RXEEFQIYEKYCQNKPRSESLWRQCSDC 124
Query: 502 NPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAIL 545
P F E +L+ LSL S+L+ P+QR+T+ LL L
Sbjct: 125 -PFFQECQKKLD-----HKLSLDSYLLKPVQRITKYQLLLKEXL 162
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 88/212 (41%), Gaps = 21/212 (9%)
Query: 395 ELITSEASYFKSLTVL--EKHFIASPLLDDVN-----ILSKNDRKHLFGNVTAVRKCSER 447
EL++SE +Y + L L + H LDD + L++ + + + A+ +
Sbjct: 29 ELLSSEKAYVEXLQHLNLDFHGAVXRALDDXDHEGRDTLAREELRQGLSELPAIHDLHQG 88
Query: 448 LLAALEQ---CWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRET--- 501
+L LE+ W+ + ++ Q + + +I DR L L E
Sbjct: 89 ILEELEERLSNWESQQKVADVFLAREQGFDHHATHI--------LQFDRYLGLLSENCLH 140
Query: 502 NPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTT 561
+P+ A+ E E S + L+ +QR+ + +L L L P+ +EY+
Sbjct: 141 SPRLAAAVREFEQSVQGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGA 200
Query: 562 LATLNKIVHECNEEARKMERYYEMLLLSRLIK 593
L+ ++K+ N+ + E +++ + ++
Sbjct: 201 LSLISKVTDRANDSXEQGENLQKLVHIEHSVR 232
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/137 (17%), Positives = 58/137 (42%), Gaps = 19/137 (13%)
Query: 25 LMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEML 84
L+ +QR+ + +L L L P+ +EY+ L+ ++K+ N+ + E +++
Sbjct: 166 LLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSXEQGENLQKLV 225
Query: 85 LLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLF 144
+ ++ ++ R ++ G++ V ++ +LFL
Sbjct: 226 HIEHSVRGQGD------LLQPGREFLKEGTLXKVTGKNRRP-------------RHLFLX 266
Query: 145 TDLLVITKKKSNGSYSV 161
D+L+ T + +G Y +
Sbjct: 267 NDVLLYTYPQKDGKYRL 283
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 16/190 (8%)
Query: 395 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 454
E+ +E Y +L +++HF+ PL L D + +F N+ + + L +++
Sbjct: 204 EIQQTEEKYTDTLGSIQQHFL-KPL---QRFLKPQDIEIIFINIEDLLRVHTHFLKEMKE 259
Query: 455 CWQDSILLTNICEIVYQHVTNKSFNIYIKYCSN----QFHIDRTLKSLRETNPKFIEALT 510
+ N+ ++ ++ + F +Y +YCS H+DR + + K L
Sbjct: 260 AL-GTPGAANLYQVFIKY--KERFLVYGRYCSQVESASKHLDRVAAAREDVQMK----LE 312
Query: 511 ELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVH 570
E +L LM+PMQRV + LL ++ + E E L + +
Sbjct: 313 ECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQ 371
Query: 571 ECNEEARKME 580
NE R E
Sbjct: 372 CVNEVKRDNE 381
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 19/187 (10%)
Query: 19 LSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKME 78
+L LM+PMQRV + LL ++ + E E L + + NE R E
Sbjct: 323 FTLRDLLMVPMQRVLKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVNEVKRDNE 381
Query: 79 RYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAK 138
L ++ F L + + + L G ++ + K+T + +K YA
Sbjct: 382 ------TLRQITNFQ------LSIENLDQSLAHYGRPK-IDGELKITSVERRSKMDRYA- 427
Query: 139 LNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQK 198
FL L+I K++ + SY + D+ Q+ K+ + ++E+ +
Sbjct: 428 ---FLLDKALLICKRRGD-SYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQ 483
Query: 199 TVEIVLS 205
E+
Sbjct: 484 GYELFFK 490
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 16/190 (8%)
Query: 395 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 454
E+ +E Y +L +++HF+ PL L D + +F N+ + + L +++
Sbjct: 13 EIQQTEEKYTDTLGSIQQHFL-KPL---QRFLKPQDIEIIFINIEDLLRVHTHFLKEMKE 68
Query: 455 CWQDSILLTNICEIVYQHVTNKSFNIYIKYCSN----QFHIDRTLKSLRETNPKFIEALT 510
+ N+ ++ ++ + F +Y +YCS H+DR + + K L
Sbjct: 69 AL-GTPGAANLYQVFIKY--KERFLVYGRYCSQVESASKHLDRVAAAREDVQMK----LE 121
Query: 511 ELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVH 570
E +L LM+PMQRV + LL ++ + E E L + +
Sbjct: 122 ECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQEA-MEKENLRLALDAMRDLAQ 180
Query: 571 ECNEEARKME 580
NE R E
Sbjct: 181 CVNEVKRDNE 190
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 14/189 (7%)
Query: 395 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 454
E+ +E Y +L +++HF+ PL L D + +F N+ + L L
Sbjct: 32 EIQQTEEKYTDTLGSIQQHFM-KPL---QRFLKPQDMETIFVNIEELFSVHTHFLKEL-- 85
Query: 455 CWQDSIL---LTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTE 511
+D++ T + ++ ++ + F +Y +YCS + L + L E
Sbjct: 86 --KDALAGPGATTLYQVFIKY--KERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEE 141
Query: 512 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 571
+L LM+PMQRV + LL ++ + + +E E L + +
Sbjct: 142 CSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-DATEKENLRLALDAMRDLAQC 200
Query: 572 CNEEARKME 580
NE R E
Sbjct: 201 VNEVKRDNE 209
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
Query: 19 LSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKME 78
+L LM+PMQRV + LL ++ + + +E E L + + NE R E
Sbjct: 151 FTLRDLLMVPMQRVLKYHLLLQELVKHTQ-DATEKENLRLALDAMRDLAQCVNEVKRDNE 209
Query: 79 RYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAK 138
L ++ F L + + + L G ++ + K+T + +KT YA
Sbjct: 210 ------TLRQITNFQ------LSIENLDQSLANYGRPK-IDGELKITSVERRSKTDRYA- 255
Query: 139 LNLFLFTDLLVITKKKSN 156
FL L+I K++ +
Sbjct: 256 ---FLLDKALLICKRRGD 270
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 15/201 (7%)
Query: 396 LITSEASYFKSL-TVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 454
++ +E Y K L TVL + PL + S N +L GN+ + + L+ +LE+
Sbjct: 21 ILETENEYSKELQTVLSTYL--RPLQTSEKLSSANI-SYLMGNLEEICSFQQMLVQSLEE 77
Query: 455 CWQ--DSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTEL 512
C + ++ C + ++ + +Y+ YC+N L E +F+E T+
Sbjct: 78 CTKLPEAQQRVGGC---FLNLMPQMKTLYLTYCANHPSAVNVLTEHSEELGEFME--TKG 132
Query: 513 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 572
S P L L + L P R+ + P L + + H++ + ++A + +C
Sbjct: 133 ASSPGI--LVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQC 190
Query: 573 NEEARKMERYYEMLLLSRLIK 593
E ++ E E+ +L+ I+
Sbjct: 191 QEVRKRKE--LELQILTEAIR 209
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 8/183 (4%)
Query: 395 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 454
E+ +E Y +L +++HF+ PL L D + +F N+ + L L+
Sbjct: 34 EIQQTEEKYTDTLGSIQQHFM-KPL---QRFLKPQDMETIFVNIEELFSVHTHFLKELKD 89
Query: 455 CWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELES 514
T + ++ ++ + F +Y +YCS + L + L E
Sbjct: 90 ALAGPGA-TTLYQVFIKY--KERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQ 146
Query: 515 DPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNE 574
+L LM+PMQRV + LL ++ + + +E E L + + NE
Sbjct: 147 RANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-DATEKENLRLALDAMRDLAQCVNE 205
Query: 575 EAR 577
R
Sbjct: 206 VKR 208
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7
A
Length = 311
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 478 FNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRL 537
F +Y+ YC N+ D T L F E + + S+S S+L+ P+QR+T+
Sbjct: 97 FQMYVTYCKNK--PDSTQLILEHAGSYFDEIQ---QRHGLANSIS--SYLIKPVQRITKY 149
Query: 538 PLLFDAILT 546
LL +LT
Sbjct: 150 QLLLKELLT 158
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 478 FNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRL 537
F +Y+ YC N+ D T L F E + + S+S S+L+ P+QR+T+
Sbjct: 99 FQMYVTYCKNK--PDSTQLILEHAGSYFDEIQ---QRHGLANSIS--SYLIKPVQRITKY 151
Query: 538 PLLFDAILT 546
LL +LT
Sbjct: 152 QLLLKELLT 160
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 477 SFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTR 536
F +Y+ YC N+ ++ + E F + + + + S+ S+L+ P+QRVT+
Sbjct: 99 KFQMYVTYCKNKPDSNQLI---LEHAGTFFDEIQQRHG----LANSISSYLIKPVQRVTK 151
Query: 537 LPLLFDAILT 546
LL +LT
Sbjct: 152 YQLLLKELLT 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,167,557
Number of Sequences: 62578
Number of extensions: 716046
Number of successful extensions: 1702
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1643
Number of HSP's gapped (non-prelim): 69
length of query: 654
length of database: 14,973,337
effective HSP length: 105
effective length of query: 549
effective length of database: 8,402,647
effective search space: 4613053203
effective search space used: 4613053203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)