Query psy5772
Match_columns 654
No_of_seqs 509 out of 3042
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 17:36:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3523|consensus 100.0 2.1E-63 4.7E-68 514.4 23.6 291 354-653 223-514 (695)
2 KOG3523|consensus 100.0 7E-45 1.5E-49 377.0 17.3 270 3-290 371-653 (695)
3 KOG4424|consensus 100.0 9.8E-41 2.1E-45 345.7 20.5 240 386-654 64-304 (623)
4 KOG4305|consensus 100.0 1.3E-37 2.7E-42 347.5 16.8 274 362-653 312-591 (1029)
5 KOG3520|consensus 100.0 4.3E-36 9.4E-41 335.9 17.5 272 362-652 367-650 (1167)
6 KOG3521|consensus 100.0 3E-33 6.6E-38 292.0 17.6 270 364-653 158-457 (846)
7 KOG4424|consensus 100.0 1.8E-33 3.9E-38 291.9 11.4 197 2-224 171-370 (623)
8 KOG2070|consensus 100.0 3.6E-32 7.8E-37 275.2 19.7 322 244-653 19-340 (661)
9 cd00160 RhoGEF Guanine nucleot 100.0 5E-32 1.1E-36 260.5 17.5 179 389-573 1-181 (181)
10 smart00325 RhoGEF Guanine nucl 100.0 7.4E-32 1.6E-36 259.1 16.3 178 392-574 1-180 (180)
11 KOG3518|consensus 100.0 2.6E-30 5.6E-35 250.5 13.2 243 387-653 120-367 (521)
12 KOG2996|consensus 100.0 3.7E-29 8E-34 257.6 19.2 243 386-653 195-437 (865)
13 PF00621 RhoGEF: RhoGEF domain 100.0 5.8E-29 1.3E-33 238.7 16.8 179 392-574 1-180 (180)
14 COG5422 ROM1 RhoGEF, Guanine n 99.9 8.8E-28 1.9E-32 257.7 6.7 276 362-653 461-740 (1175)
15 KOG3522|consensus 99.9 9.5E-24 2.1E-28 227.9 13.4 229 389-653 1-231 (925)
16 KOG3520|consensus 99.9 1E-24 2.2E-29 245.0 4.3 209 3-229 510-727 (1167)
17 KOG2996|consensus 99.9 4.3E-22 9.2E-27 205.8 14.8 194 7-223 311-511 (865)
18 KOG3521|consensus 99.9 6.5E-23 1.4E-27 215.1 5.8 201 3-222 300-525 (846)
19 KOG3519|consensus 99.9 1.2E-21 2.6E-26 224.0 15.5 250 384-653 332-592 (756)
20 KOG4305|consensus 99.8 4.3E-21 9.4E-26 215.6 9.7 206 3-222 452-685 (1029)
21 KOG3518|consensus 99.8 1E-21 2.3E-26 190.9 2.4 198 3-224 233-433 (521)
22 cd01221 PH_ephexin Ephexin Ple 99.8 6.3E-20 1.4E-24 159.2 12.4 110 107-220 1-119 (125)
23 KOG4240|consensus 99.8 1.3E-19 2.7E-24 202.8 6.6 223 387-653 631-860 (1025)
24 KOG3531|consensus 99.8 5.7E-20 1.2E-24 197.6 -0.1 237 391-654 536-780 (1036)
25 KOG0689|consensus 99.7 5.9E-19 1.3E-23 185.1 5.0 228 384-653 58-290 (448)
26 KOG3524|consensus 99.7 9.3E-18 2E-22 177.9 10.0 243 381-653 377-625 (850)
27 KOG0689|consensus 99.6 3E-16 6.6E-21 164.8 6.3 183 6-223 174-360 (448)
28 KOG4240|consensus 99.6 1.7E-17 3.7E-22 185.9 -4.7 171 19-226 757-931 (1025)
29 cd01220 PH_CDEP Chondrocyte-de 99.6 1.8E-14 4E-19 122.2 9.7 95 108-223 1-97 (99)
30 cd01232 PH_TRIO Trio pleckstri 99.5 1.6E-14 3.5E-19 124.9 9.1 105 106-223 2-112 (114)
31 cd01218 PH_phafin2 Phafin2 Pl 99.5 3.7E-14 8E-19 120.7 9.9 97 106-223 1-98 (104)
32 COG5422 ROM1 RhoGEF, Guanine n 99.5 5.8E-15 1.3E-19 159.9 4.2 208 3-222 601-833 (1175)
33 cd01261 PH_SOS Son of Sevenles 99.5 9.5E-14 2.1E-18 119.4 9.3 99 107-223 2-109 (112)
34 cd01227 PH_Dbs Dbs (DBL's big 99.5 5.3E-14 1.1E-18 124.3 5.8 118 107-233 1-125 (133)
35 smart00325 RhoGEF Guanine nucl 99.5 2.8E-14 6.1E-19 136.8 4.4 71 2-72 110-180 (180)
36 cd01222 PH_clg Clg (common-sit 99.5 2.8E-13 6E-18 113.7 9.0 95 107-224 2-96 (97)
37 cd01219 PH_FGD FGD (faciogenit 99.5 2.7E-13 5.9E-18 116.3 9.1 95 109-223 2-99 (101)
38 cd01224 PH_Collybistin Collybi 99.4 1.4E-12 3.1E-17 110.1 10.8 98 108-220 1-104 (109)
39 KOG3524|consensus 99.4 1.1E-13 2.4E-18 147.3 4.1 196 2-219 492-707 (850)
40 cd00160 RhoGEF Guanine nucleot 99.4 3.2E-13 6.9E-18 129.6 4.8 67 3-71 115-181 (181)
41 cd01226 PH_exo84 Exocyst compl 99.3 6.3E-12 1.4E-16 104.7 8.8 97 109-223 2-98 (100)
42 KOG3531|consensus 99.3 2.4E-12 5.1E-17 139.6 6.2 192 3-226 654-847 (1036)
43 PF00621 RhoGEF: RhoGEF domain 99.2 4E-12 8.6E-17 121.6 4.1 70 3-72 111-180 (180)
44 cd01228 PH_BCR-related BCR (br 99.2 1.4E-11 3E-16 99.9 5.1 87 107-221 1-92 (96)
45 cd01223 PH_Vav Vav pleckstrin 99.1 1.1E-10 2.4E-15 99.5 7.9 103 107-224 2-112 (116)
46 KOG3522|consensus 99.1 1.2E-10 2.6E-15 127.4 8.0 134 24-174 121-270 (925)
47 KOG3519|consensus 98.7 1.5E-08 3.3E-13 116.8 7.4 143 3-156 452-597 (756)
48 PF15405 PH_5: Pleckstrin homo 98.7 1.8E-08 3.9E-13 90.6 5.8 100 109-221 1-133 (135)
49 KOG4269|consensus 98.6 2.7E-08 5.9E-13 109.4 3.8 231 387-653 331-584 (1112)
50 KOG2070|consensus 98.6 1.1E-06 2.5E-11 91.0 14.6 176 19-220 227-403 (661)
51 cd01221 PH_ephexin Ephexin Ple 98.2 1.3E-06 2.8E-11 76.5 4.6 41 609-653 1-42 (125)
52 PF00169 PH: PH domain; Inter 98.0 2.4E-05 5.1E-10 66.8 7.9 98 110-223 2-103 (104)
53 PF15411 PH_10: Pleckstrin hom 98.0 5.5E-05 1.2E-09 66.0 10.1 97 105-219 3-116 (116)
54 KOG0931|consensus 97.9 1.1E-05 2.3E-10 83.3 4.9 177 23-223 341-525 (627)
55 smart00233 PH Pleckstrin homol 97.9 4.8E-05 1E-09 64.1 7.8 99 110-223 2-101 (102)
56 cd01225 PH_Cool_Pix Cool (clon 97.7 0.00028 6E-09 59.8 8.7 78 137-223 29-109 (111)
57 cd01229 PH_etc2 Epithelial cel 97.3 0.00061 1.3E-08 57.7 6.0 108 102-221 1-125 (129)
58 cd01228 PH_BCR-related BCR (br 97.2 0.00022 4.8E-09 58.4 2.3 33 609-654 1-33 (96)
59 cd00821 PH Pleckstrin homology 97.2 0.0013 2.8E-08 54.5 6.9 79 136-221 16-95 (96)
60 cd01238 PH_Tec Tec pleckstrin 97.1 0.002 4.4E-08 55.6 7.3 81 135-221 20-105 (106)
61 cd00900 PH-like Pleckstrin hom 97.0 0.0039 8.4E-08 52.0 8.8 80 136-221 19-98 (99)
62 cd01255 PH_TIAM TIAM Pleckstri 97.0 0.0022 4.8E-08 56.3 6.8 118 98-223 17-154 (160)
63 cd01246 PH_oxysterol_bp Oxyste 96.9 0.0029 6.4E-08 52.7 6.8 77 136-222 15-91 (91)
64 KOG4269|consensus 96.9 0.0004 8.6E-09 77.5 1.7 127 19-176 473-614 (1112)
65 cd01233 Unc104 Unc-104 pleckst 96.8 0.0048 1E-07 52.7 7.6 80 136-223 18-98 (100)
66 cd01247 PH_GPBP Goodpasture an 96.7 0.0073 1.6E-07 50.6 7.5 76 136-221 15-90 (91)
67 cd01219 PH_FGD FGD (faciogenit 96.6 0.0016 3.5E-08 55.7 3.2 34 610-654 1-34 (101)
68 cd01244 PH_RasGAP_CG9209 RAS_G 96.6 0.0084 1.8E-07 50.8 7.1 78 135-221 20-97 (98)
69 cd01260 PH_CNK Connector enhan 96.4 0.0093 2E-07 50.4 6.8 77 135-221 19-95 (96)
70 cd01252 PH_cytohesin Cytohesin 96.4 0.011 2.4E-07 52.7 7.3 84 136-224 16-114 (125)
71 cd01241 PH_Akt Akt pleckstrin 96.3 0.017 3.7E-07 49.5 7.7 83 136-222 17-101 (102)
72 cd01236 PH_outspread Outspread 96.0 0.028 6E-07 48.2 7.5 80 134-220 22-101 (104)
73 cd01250 PH_centaurin Centaurin 96.0 0.02 4.4E-07 47.9 6.6 78 136-221 16-93 (94)
74 cd01226 PH_exo84 Exocyst compl 95.9 0.0069 1.5E-07 51.0 3.2 35 610-654 1-35 (100)
75 cd01251 PH_centaurin_alpha Cen 95.8 0.023 5.1E-07 48.7 6.0 80 136-223 16-100 (103)
76 cd01253 PH_beta_spectrin Beta- 95.8 0.034 7.5E-07 47.7 7.1 82 133-221 20-103 (104)
77 cd01264 PH_melted Melted pleck 95.5 0.057 1.2E-06 45.9 7.3 80 136-222 19-100 (101)
78 cd01235 PH_SETbf Set binding f 95.5 0.044 9.6E-07 46.6 6.8 80 136-223 15-101 (101)
79 cd01232 PH_TRIO Trio pleckstri 95.4 0.019 4.1E-07 50.0 4.0 38 608-653 2-39 (114)
80 KOG0931|consensus 95.0 0.063 1.4E-06 56.3 6.9 111 522-653 338-452 (627)
81 KOG0930|consensus 94.6 0.059 1.3E-06 52.9 5.4 82 137-223 278-375 (395)
82 cd01266 PH_Gab Gab (Grb2-assoc 93.5 0.27 5.9E-06 42.5 7.0 80 136-221 19-106 (108)
83 cd01265 PH_PARIS-1 PARIS-1 ple 93.5 0.24 5.3E-06 41.7 6.5 74 137-222 18-93 (95)
84 cd01263 PH_anillin Anillin Ple 93.0 0.33 7.3E-06 42.8 6.7 86 136-221 19-121 (122)
85 cd01230 PH_EFA6 EFA6 Pleckstri 92.7 0.47 1E-05 41.6 7.2 83 134-223 24-111 (117)
86 cd01227 PH_Dbs Dbs (DBL's big 91.7 0.18 3.9E-06 45.1 3.4 40 609-653 1-44 (133)
87 cd01245 PH_RasGAP_CG5898 RAS G 91.6 0.55 1.2E-05 39.7 6.2 53 163-221 45-97 (98)
88 cd01257 PH_IRS Insulin recepto 91.2 0.38 8.2E-06 41.0 4.8 31 184-220 69-99 (101)
89 KOG1729|consensus 90.4 0.069 1.5E-06 54.2 -0.5 101 99-220 36-137 (288)
90 KOG0690|consensus 90.2 0.22 4.7E-06 50.6 2.8 82 136-223 31-116 (516)
91 cd01237 Unc112 Unc-112 pleckst 90.1 1 2.2E-05 38.4 6.4 37 185-221 65-101 (106)
92 PF15409 PH_8: Pleckstrin homo 87.8 4.3 9.2E-05 33.6 8.3 74 135-222 13-88 (89)
93 PF15410 PH_9: Pleckstrin homo 87.3 0.72 1.6E-05 40.6 3.9 81 133-220 23-115 (119)
94 cd01249 PH_oligophrenin Oligop 86.8 3.2 6.8E-05 35.4 7.2 21 200-220 82-102 (104)
95 cd01231 PH_Lnk LNK-family Plec 86.7 1.2 2.5E-05 37.3 4.4 38 179-221 69-106 (107)
96 PF15413 PH_11: Pleckstrin hom 85.1 1.7 3.6E-05 37.8 5.0 24 198-221 88-111 (112)
97 cd01254 PH_PLD Phospholipase D 80.1 8.4 0.00018 34.0 7.6 33 184-222 89-121 (121)
98 KOG1029|consensus 73.9 3 6.5E-05 47.1 3.4 37 242-283 1053-1089(1118)
99 PTZ00283 serine/threonine prot 73.5 28 0.00062 38.8 11.3 36 183-223 454-489 (496)
100 PF15406 PH_6: Pleckstrin homo 72.1 6.9 0.00015 33.3 4.4 48 166-220 63-110 (112)
101 cd01242 PH_ROK Rok (Rho- assoc 69.0 33 0.00072 29.5 7.9 36 184-223 75-110 (112)
102 cd01256 PH_dynamin Dynamin ple 67.6 40 0.00087 28.4 7.8 81 137-220 20-102 (110)
103 KOG2059|consensus 64.5 26 0.00057 39.6 8.1 81 134-223 584-664 (800)
104 cd01243 PH_MRCK MRCK (myotonic 63.7 20 0.00044 31.3 5.7 37 184-220 79-116 (122)
105 KOG1729|consensus 60.1 2.6 5.6E-05 43.0 -0.4 41 601-654 36-76 (288)
106 PF15277 Sec3-PIP2_bind: Exocy 58.7 31 0.00068 28.7 5.9 61 150-219 24-84 (91)
107 PTZ00267 NIMA-related protein 57.6 45 0.00098 37.0 9.0 82 136-223 392-476 (478)
108 smart00233 PH Pleckstrin homol 48.4 20 0.00044 28.9 3.3 32 612-653 2-33 (102)
109 PLN00188 enhanced disease resi 48.1 38 0.00083 38.8 6.2 106 109-224 4-110 (719)
110 PF14604 SH3_9: Variant SH3 do 38.9 11 0.00024 27.2 0.2 31 248-283 2-32 (49)
111 cd01259 PH_Apbb1ip Apbb1ip (Am 36.2 71 0.0015 27.6 4.6 38 183-220 67-105 (114)
112 PF00018 SH3_1: SH3 domain; I 34.1 13 0.00028 26.6 -0.1 32 247-283 2-33 (48)
113 cd01225 PH_Cool_Pix Cool (clon 31.5 74 0.0016 27.4 4.0 15 640-654 30-44 (111)
114 KOG4226|consensus 31.2 21 0.00046 35.4 0.8 46 246-300 111-156 (379)
115 PF15601 Imm42: Immunity prote 29.9 96 0.0021 27.8 4.7 41 25-69 28-68 (134)
116 PF14643 DUF4455: Domain of un 28.1 8.6E+02 0.019 27.0 14.0 172 386-574 81-260 (473)
117 KOG0521|consensus 28.0 1.3E+02 0.0029 35.5 6.7 36 183-224 334-369 (785)
118 cd01218 PH_phafin2 Phafin2 Pl 25.7 71 0.0015 27.3 3.0 14 608-621 1-14 (104)
119 PF08650 DASH_Dad4: DASH compl 23.5 3E+02 0.0064 21.9 5.7 43 36-85 10-52 (72)
120 KOG4225|consensus 21.8 40 0.00087 36.0 0.9 34 246-284 436-469 (489)
121 cd01240 PH_beta-ARK Beta adren 21.5 68 0.0015 27.5 2.0 91 110-223 4-98 (116)
122 PF15404 PH_4: Pleckstrin homo 20.8 51 0.0011 31.4 1.3 21 200-220 162-182 (185)
123 PF08458 PH_2: Plant pleckstri 20.2 1.8E+02 0.0039 25.2 4.3 23 201-223 81-103 (110)
124 PF12210 Hrs_helical: Hepatocy 20.1 1.1E+02 0.0024 25.6 2.9 49 402-455 2-55 (96)
No 1
>KOG3523|consensus
Probab=100.00 E-value=2.1e-63 Score=514.38 Aligned_cols=291 Identities=47% Similarity=0.778 Sum_probs=273.9
Q ss_pred ccccCCCCCCCcccccCccccChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCCCCChhhhhh
Q psy5772 354 LEIIAPPHMNRSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKH 433 (654)
Q Consensus 354 ~~~~~~~~~~~~~w~~~p~v~~~~~~~~l~~~~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~l~~~~~~~ 433 (654)
+..+++..+..++|+++|+|+.+|++++|+++++|+|+++||+|++|++|+++|++++++|+.+..+ ..+|++.|.++
T Consensus 223 ~~~~~~~gs~~sLWqelP~Vr~sglL~tls~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~l--~~~Ls~~d~~~ 300 (695)
T KOG3523|consen 223 PTGLSNPGSRRSLWQELPEVRASGLLETLSPEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKEL--RSTLSASDRHH 300 (695)
T ss_pred cccCCCCCcccchhhhhHHHHhcccccccCHHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHHH--HHhcChHHHHH
Confidence 3445667789999999999999999999999999999999999999999999999999999997666 88999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHh
Q psy5772 434 LFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELE 513 (654)
Q Consensus 434 lF~ni~~I~~~h~~fl~~Le~~~~~~~~~~~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~ 513 (654)
||+||.++.+++++||.+|+.++++++.+.+||||+.+|++ .+|.+|+.||+|+.++.+++++++.+|+.|.+.+.+++
T Consensus 301 LFSni~~V~~~Serfl~dLE~r~e~ni~i~dicDiv~~ha~-~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE 379 (695)
T KOG3523|consen 301 LFSNIQDVREVSERFLCDLEARLEENIFIDDICDIVEDHAA-KHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLE 379 (695)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHHhcc-cccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred cCCCCCCcCchhhhcccchhhccHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5772 514 SDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIK 593 (654)
Q Consensus 514 ~~~~~~~l~L~s~Li~PvQRi~rY~lLL~~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~ 593 (654)
.+|.|++++|.||||+||||||||||||++|++.|++++++|+.+++|+.++++++..||+++++|+++++|+.|.++|+
T Consensus 380 ~~p~C~~Lpl~SFLiLPmQRITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~le 459 (695)
T KOG3523|consen 380 SSPKCQGLPLRSFLILPMQRITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLE 459 (695)
T ss_pred cCccccCCCchhhhhchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCceEEEEeeeEEEecc-ccchhhcccccccccceEEEEecCCeeecc
Q psy5772 594 FSLKEVKCLPVISSSRWLVRSGSMNFVNVD-SKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 594 ~~~~~~~~~~l~~~~R~Li~~G~l~~~~~~-~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
|++ +|.+||++.+|||+++|+|+.+... ++..+..|...+ ++|+|||||+||||
T Consensus 460 F~k--vK~~PLiS~sRwLvk~GELt~l~~~~~s~~l~~k~~~~----~vylfLFnD~Llit 514 (695)
T KOG3523|consen 460 FKK--VKAFPLVSQSRWLVKRGELTQLVERRASPLLFSKRLSK----TVYLFLFNDLLLIT 514 (695)
T ss_pred ccc--cceeeeccchhhhhhccccceeecccccchhhcccccc----eeeeeeecceeeEe
Confidence 964 9999999999999999999888622 233333444444 99999999999998
No 2
>KOG3523|consensus
Probab=100.00 E-value=7e-45 Score=377.02 Aligned_cols=270 Identities=36% Similarity=0.578 Sum_probs=233.7
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYE 82 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~ 82 (654)
|-..|+++|++|.|++|+|.||||+||||||||+|||++|+|.|++++++|+..++|+.+++++++.||+.++.|+.++.
T Consensus 371 F~e~l~rLE~~p~C~~Lpl~SFLiLPmQRITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe~a~rMertEe 450 (695)
T KOG3523|consen 371 FREVLERLESSPKCQGLPLRSFLILPMQRITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNEGARRMERTEE 450 (695)
T ss_pred HHHHHHHHhcCccccCCCchhhhhchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCcccCCceEEeecceEEEecCcc-chhhhhcccccccceEEEEecCCeEEEEEecCCCceEE
Q psy5772 83 MLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSK-MTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSV 161 (654)
Q Consensus 83 l~~l~~~i~~~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~-~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~ 161 (654)
|+.|.++|+|. +++.+||++.+|||+++|+|+.+..... .....| ..++.+|+|||||+||+||+|.+++|.|
T Consensus 451 li~i~~~leF~--kvK~~PLiS~sRwLvk~GELt~l~~~~~s~~l~~k----~~~~~vylfLFnD~Llitk~k~~~~f~V 524 (695)
T KOG3523|consen 451 LIRISRQLEFK--KVKAFPLVSQSRWLVKRGELTQLVERRASPLLFSK----RLSKTVYLFLFNDLLLITKKKSEGSFQV 524 (695)
T ss_pred HHHHHhhcccc--ccceeeeccchhhhhhccccceeecccccchhhcc----cccceeeeeeecceeeEeeecCCCceEE
Confidence 99999999995 5899999999999999999977753322 111122 2235788999999999999999999999
Q ss_pred EeeccccceEEEEcc--CCCCCCC------CceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccccCCCCcCCCC
Q psy5772 162 IDYCTRAMMQMAAIE--DSVPPTN------KYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKILNSPSWYSDC 233 (654)
Q Consensus 162 ~~~~~~~~l~v~~~~--~~~~~~~------~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~~~~~~~~~~ 233 (654)
++|.+++.+.|+.++ ...++.. +|.|.+++..|++|+..+|.|.|+|++++++||+++.-.- ..+
T Consensus 525 ~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~p~~-------~~~ 597 (695)
T KOG3523|consen 525 FDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALRPPS-------STK 597 (695)
T ss_pred eeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcCCCC-------CCC
Confidence 999999999999998 3333322 4899999999999999999999999999999999886211 111
Q ss_pred CC--ccCCCCCCcccccCCCcCccCcchhhhhhccccccccccCCCCccchh--hccccCC
Q psy5772 234 SL--FDPTANVPAFVDSGTYPVQENPKIVAVFLLEGIHQIKHLPPQGSAYWD--NLWDSGN 290 (654)
Q Consensus 234 ~~--~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~--~~~~~g~ 290 (654)
.+ .....|+||++|..+|.+.++|+++ ++.+ ||..+.++..+||+ +++.+|.
T Consensus 598 ~~~~i~e~~dcpQv~~~~sy~a~q~Del~----Le~~-Dvv~v~~k~~DGWl~GeRl~Dge 653 (695)
T KOG3523|consen 598 PPEKIYEEWDCPQVQCVHSYKAKQPDELT----LELA-DVVNVLQKTPDGWLEGERLRDGE 653 (695)
T ss_pred ChhhhhhccCCChhheeeccccCCCceee----eehh-hhhhhhhcCCCccccccccccCc
Confidence 11 1234699999999999999999999 9988 99999999999999 5554443
No 3
>KOG4424|consensus
Probab=100.00 E-value=9.8e-41 Score=345.73 Aligned_cols=240 Identities=25% Similarity=0.437 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCCCCChhhhhhhcCCHHHHHHHHHH-HHHHHHHHHhcCccccc
Q psy5772 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER-LLAALEQCWQDSILLTN 464 (654)
Q Consensus 386 ~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~l~~~~~~~lF~ni~~I~~~h~~-fl~~Le~~~~~~~~~~~ 464 (654)
.+|+.++++||+.||++||+.|.+|.++|.. +|.....++.+.+..||+||..|+.+|.. ||..|+.+.
T Consensus 64 ~qk~~~iaqEll~tE~~Yv~~L~lLd~~F~~--~L~~~~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~-------- 133 (623)
T KOG4424|consen 64 LQKLRHIAQELLDTERTYVKRLHLLDQVFCR--RLLEEASIPADVITGLFGNISSIHNFHGQFLLPELEKRI-------- 133 (623)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH--------
Confidence 6889999999999999999999999999999 88877799999999999999999999955 666677665
Q ss_pred HHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHHHHHHH
Q psy5772 465 ICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAI 544 (654)
Q Consensus 465 i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~lLL~~l 544 (654)
||++|.+.+| |+++|..|+.||+.|..++..+.+++|.|+++++++++++.|.++.|.++|+.|||||+||.|||+++
T Consensus 134 Iadv~qKlAP--FLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~y 211 (623)
T KOG4424|consen 134 IADVFQKLAP--FLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDY 211 (623)
T ss_pred HHHHHHHhhh--HHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHH
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCceEEEEeeeEEEeccc
Q psy5772 545 LTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDS 624 (654)
Q Consensus 545 lk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~~~~R~Li~~G~l~~~~~~~ 624 (654)
++++|++.+|+.++++|++.|...++++|++++++|+.++|++++.+++..+ .|++|+|.||++|.|...+.
T Consensus 212 l~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~e~------dIV~PsreLiKEG~l~Kis~-- 283 (623)
T KOG4424|consen 212 LLYLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGNEE------DIVSPSRELIKEGQLQKISA-- 283 (623)
T ss_pred HHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------cccCcHHHHhhccceeeeec--
Confidence 9999999999999999999999999999999999999999999999997653 89999999999999999961
Q ss_pred cchhhcccccccccceEEEEecCCeeeccC
Q psy5772 625 KMTFARKLNKTHFYAKLNLFLFTDLHPVAG 654 (654)
Q Consensus 625 ~~~~~~k~~~~~~~~~~~lfLFnD~Llit~ 654 (654)
+..+.. ++|||||||++++|.
T Consensus 284 -----k~~~~q----eRylfLFNd~~lyc~ 304 (623)
T KOG4424|consen 284 -----KNGTTQ----ERYLFLFNDILLYCK 304 (623)
T ss_pred -----cCCCcc----eeEEEEehhHHHhhh
Confidence 223344 899999999999883
No 4
>KOG4305|consensus
Probab=100.00 E-value=1.3e-37 Score=347.52 Aligned_cols=274 Identities=28% Similarity=0.396 Sum_probs=250.3
Q ss_pred CCCcccccCccccChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCCCCChhh----hhhhcCC
Q psy5772 362 MNRSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKND----RKHLFGN 437 (654)
Q Consensus 362 ~~~~~w~~~p~v~~~~~~~~l~~~~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~l~~~~----~~~lF~n 437 (654)
+...+|+.-+ +..+++.++++|+|||++|+|++.||++||++|+.+.+.|++ ||....++++++ +..+|+|
T Consensus 312 ~~~~~W~~s~---d~~~le~ls~rEikRQe~I~Eli~tE~d~v~dLel~re~y~k--pl~~S~iipE~~~~~Fi~~vF~n 386 (1029)
T KOG4305|consen 312 EEEKLWSESV---DLSVLESLSPREIKRQEAIFELIYTEEDFVADLELAREIYRK--PLLESSIIPEQERAEFIAHVFGN 386 (1029)
T ss_pred ccchhhhhcC---chHhHhhcCHHHhhhhheeEEEEeehhHHHHHHHHHHHHHhC--hHhhhccCccchhHHHHHHHHhh
Confidence 3445677653 456789999999999999999999999999999999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCC
Q psy5772 438 VTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPV 517 (654)
Q Consensus 438 i~~I~~~h~~fl~~Le~~~~~~~~~~~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~ 517 (654)
+++|+.+|+.||.+|..+....+.+..|||||+.|++ .++.|+.||++++.+..+++..++.|+.|++|++++++.+.
T Consensus 387 ~~~ii~ln~~LL~aL~~r~k~~G~V~~IGdIll~~lp--~~~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp~ 464 (1029)
T KOG4305|consen 387 IEEIIQLNEKLLKALRVRQKLSGVVEGIGDILLAWLP--KAEPYISYGANQAYAKALIEQKKKQNPRFARFLKECESSPE 464 (1029)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHhh--hhhHHHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHhChh
Confidence 9999999999999999999999899999999999999 88889999999999999999998999999999999999999
Q ss_pred CCCcCchhhhcccchhhccHHHHHHHHHHhC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy5772 518 CQSLSLHSFLMLPMQRVTRLPLLFDAILTRL-RPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSL 596 (654)
Q Consensus 518 ~~~l~L~s~Li~PvQRi~rY~lLL~~llk~t-~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~ 596 (654)
|++++|.+||.+|+||+.||||||++|||+| |.+|+|++.+.+|+..++.++.+||.+.+..|+..++..++.++.|++
T Consensus 465 ~rkl~L~~FL~kp~sRl~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~~l~~l~~qllfe~ 544 (1029)
T KOG4305|consen 465 SRKLDLVSFLTKPTSRLQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQGSGEAENRCRLEELSQQLLFEP 544 (1029)
T ss_pred hhccchhhhhccccchhheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChhhccchhhhhHHHHHHHhhccc
Confidence 9999999999999999999999999999999 778899999999999999999999999999999999999999999986
Q ss_pred ccccccccccCCceEEEEeeeEEEeccccchhhcccccccccceE-EEEecCCeeecc
Q psy5772 597 KEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKL-NLFLFTDLHPVA 653 (654)
Q Consensus 597 ~~~~~~~l~~~~R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~-~lfLFnD~Llit 653 (654)
++.-++.+.++.|.|+.+|.|.... . .+.... .. |.|||+|+||+|
T Consensus 545 ~e~~~L~l~d~~R~l~fkgil~~~~-~------~~~~~~----~~~~~fLl~d~lLLt 591 (1029)
T KOG4305|consen 545 GEAVNLGLNDPERKLIFKGILKRKE-L------SKTDGT----KEDYIFLLLDNLLLT 591 (1029)
T ss_pred cccccccccChhhhcceeeeeeecc-c------cccCCC----ccceeehhhhhhhhh
Confidence 4555666778999999999998774 1 111221 44 999999999986
No 5
>KOG3520|consensus
Probab=100.00 E-value=4.3e-36 Score=335.86 Aligned_cols=272 Identities=21% Similarity=0.409 Sum_probs=249.4
Q ss_pred CCCcccccCccccChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCCCCChhhhhhhcCCHHHH
Q psy5772 362 MNRSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 441 (654)
Q Consensus 362 ~~~~~w~~~p~v~~~~~~~~l~~~~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~l~~~~~~~lF~ni~~I 441 (654)
.....|+.+ ++++++.++.+.+.|||++|.||+.||+.+|+.|++|..+|+. +|....+++.+++..||.|+++|
T Consensus 367 ~e~~sWs~~---V~~e~L~~lk~~~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q--~m~~e~~~~~~~l~~LFP~LdeL 441 (1167)
T KOG3520|consen 367 LEAESWSEA---VPSEVLKGLKKDVVKRQEVIYELFQTERHHVRTLKILDRVFYQ--PMMEELLFPQEELNKLFPCLDEL 441 (1167)
T ss_pred cCccchhhc---cCHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccCCHHHHHHhcccHHHH
Confidence 455669986 6899999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcc-cccHHHHHHHhcc----cchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCC
Q psy5772 442 RKCSERLLAALEQCWQDSIL-LTNICEIVYQHVT----NKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDP 516 (654)
Q Consensus 442 ~~~h~~fl~~Le~~~~~~~~-~~~i~~if~~~~~----~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~ 516 (654)
+++|..|+..|.++..++.. +..|||+++.+++ ..+.++|..||++|..|.+.++.+.+++++|..|+++++++|
T Consensus 442 ~eiH~~f~~~lk~rr~e~~~vI~~IGDlLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p 521 (1167)
T KOG3520|consen 442 IEIHSSFLQRLKERRKESLVVIKRIGDLLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNP 521 (1167)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcch
Confidence 99999999999999998876 8999999999986 578899999999999999999999988999999999999999
Q ss_pred CCCCcCchhhhcccchhhccHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy5772 517 VCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSL 596 (654)
Q Consensus 517 ~~~~l~L~s~Li~PvQRi~rY~lLL~~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~ 596 (654)
.|+++.|.+++..-+||||||||||+.|+|+|..+..|++.|+.|++.++.|+..+|++++.+|+..+|.+|+++++-..
T Consensus 522 ~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~~s 601 (1167)
T KOG3520|consen 522 VCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDAKS 601 (1167)
T ss_pred HHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998332
Q ss_pred -------ccccccccccCCceEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeec
Q psy5772 597 -------KEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPV 652 (654)
Q Consensus 597 -------~~~~~~~l~~~~R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Lli 652 (654)
.+.+...| ..|+||++|.|++.. .+.+.. ++|++||.|+||+
T Consensus 602 ~~~~~~~~~F~kldL--t~rkLihdG~Ltwk~--------~~gk~~----dv~vlLLtD~Lvl 650 (1167)
T KOG3520|consen 602 LSKYKNGEEFRKLDL--TRRKLIHDGPLTWKT--------ARGKTK----DVHVLLLTDILVL 650 (1167)
T ss_pred hhhccccchhhhhhh--hhhheeccCceEEee--------ccCchh----hhHHHHHHHHHHH
Confidence 11222233 579999999999995 233333 8999999999987
No 6
>KOG3521|consensus
Probab=100.00 E-value=3e-33 Score=292.03 Aligned_cols=270 Identities=24% Similarity=0.330 Sum_probs=227.9
Q ss_pred CcccccCccccChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCcCCCCChhhhhhhcCCHHHHH
Q psy5772 364 RSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIAS-PLLDDVNILSKNDRKHLFGNVTAVR 442 (654)
Q Consensus 364 ~~~w~~~p~v~~~~~~~~l~~~~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~-~~l~~~~~l~~~~~~~lF~ni~~I~ 442 (654)
...|+++-.- .+.|+.++.|.|+|||||++||..|++.|..+.+.|..+ ..|+..++|-+-+...||+|+..|+
T Consensus 158 eksWRelV~g-----heslS~~~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~ 232 (846)
T KOG3521|consen 158 EKSWRELVHG-----HESLSDKSCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDVEAERLFSNVPTLF 232 (846)
T ss_pred HhHHHHhhcc-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhchHHHH
Confidence 3469997321 368999999999999999999999999999999988764 3567899999999999999999999
Q ss_pred HHHHHHHHH-----HHHHHhcCc--ccccHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcC
Q psy5772 443 KCSERLLAA-----LEQCWQDSI--LLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESD 515 (654)
Q Consensus 443 ~~h~~fl~~-----Le~~~~~~~--~~~~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~ 515 (654)
++|..|... |++...... ....+-.-|+.+.. .|..|+.||..+..++..++++.++|+.|.+|+.+||.+
T Consensus 233 ~~n~slW~~~l~P~laksr~TgepLd~~~lq~GFl~f~s--~f~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekq 310 (846)
T KOG3521|consen 233 NVNRSLWLQVLEPILAKSRETGEPLDPNYLQNGFLDFGS--WFRPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQ 310 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHH--hhhHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 999988754 333332221 12234456888887 999999999999999999999999999999999999999
Q ss_pred CCCCCcCchhhhcccchhhccHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy5772 516 PVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFS 595 (654)
Q Consensus 516 ~~~~~l~L~s~Li~PvQRi~rY~lLL~~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~ 595 (654)
+.|.++.|.+.|++|+||||||+|||+.++|+| .+..+.+.+...+..++.++.++|...++.+..+.|...-.+|+..
T Consensus 311 k~c~RqkL~D~l~kPmQRLTKY~LLLkAVlK~t-~d~~e~Eai~aMi~svEsf~~~vN~~l~qrqererL~~vm~rIe~y 389 (846)
T KOG3521|consen 311 KNCDRQKLIDTLSKPMQRLTKYPLLLKAVLKVT-TDEREREAISAMIDSVESFTAHVNKELRQRQERERLAAVMRRIEGY 389 (846)
T ss_pred hhhhhHHHHHHhhhHHHHhhhhHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999 5677889999999999999999999999999999999998888765
Q ss_pred c----------ccccccc----cc--------cCCceEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 596 L----------KEVKCLP----VI--------SSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 596 ~----------~~~~~~~----l~--------~~~R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
+ +..|.+- +. ...|.|+.+|.+.+.+ +|..|. ++|||||+|+||+|
T Consensus 390 dvVd~~sdevdknLK~~~~~~Dl~apm~g~~~~htRqLlleGdlrmKe--------gk~sK~----DVhcfLfTDllLVc 457 (846)
T KOG3521|consen 390 DVVDQDSDEVDKNLKLFLNLLDLTAPMHGRKPEHTRQLLLEGDLRMKE--------GKGSKA----DVHCFLFTDLLLVC 457 (846)
T ss_pred cccCCcHHHHHHHhhhhhhhhccccCCCCCChhhhhhhhhccceeccc--------CCCccc----ceeeeeehhHHHHh
Confidence 3 1111111 11 1459999999999996 456666 99999999999998
No 7
>KOG4424|consensus
Probab=100.00 E-value=1.8e-33 Score=291.91 Aligned_cols=197 Identities=25% Similarity=0.383 Sum_probs=175.0
Q ss_pred chhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 2 TLGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYY 81 (654)
Q Consensus 2 ~~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~ 81 (654)
.|..+|.++|++|+|++|+|+++||.||||||||.|||+++++++|++.+|+.++++|++.|...+.|+|..|+++|+.+
T Consensus 171 ~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~ 250 (623)
T KOG4424|consen 171 QFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQ 250 (623)
T ss_pred HHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEec---CCCc
Q psy5772 82 EMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKK---SNGS 158 (654)
Q Consensus 82 ~l~~l~~~i~~~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~---~~~~ 158 (654)
+|+++++++ +...++++|+|.||++|.+..++.+++ .++++|+|||||++++|+++ .+.+
T Consensus 251 kLlevqe~L------G~e~dIV~PsreLiKEG~l~Kis~k~~-----------~~qeRylfLFNd~~lyc~~r~~~~~~k 313 (623)
T KOG4424|consen 251 KLLEVQEQL------GNEEDIVSPSRELIKEGQLQKISAKNG-----------TTQERYLFLFNDILLYCKPRKRLPGSK 313 (623)
T ss_pred HHHHHHHHh------CCCccccCcHHHHhhccceeeeeccCC-----------CcceeEEEEehhHHHhhhhhhhcccce
Confidence 999999998 568889999999999999998865432 23788999999999999965 4568
Q ss_pred eEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCcccc
Q psy5772 159 YSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKIL 224 (654)
Q Consensus 159 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~ 224 (654)
|.+........+.+.+...... .+.|.++ |+....+|+|.|+++|..|+..|+++|.
T Consensus 314 ~~~r~~~s~~~~~v~~~~~~~~---~~tF~~~------G~~r~vel~a~t~~ek~eWv~~I~~~Id 370 (623)
T KOG4424|consen 314 YEVRARCSISHMQVQEDDNEEL---PHTFILT------GKKRGVELQARTEQEKKEWVQAIQDAID 370 (623)
T ss_pred eccceeeccCcchhcccccccC---CceEEEe------cccceEEeecCchhhHHHHHHHHHHHHH
Confidence 8888777777777766444333 4788887 6777799999999999999999999886
No 8
>KOG2070|consensus
Probab=100.00 E-value=3.6e-32 Score=275.21 Aligned_cols=322 Identities=16% Similarity=0.186 Sum_probs=245.3
Q ss_pred cccccCCCcCccCcchhhhhhccccccccccCCCCccchhhccccCCCCCCCCcccCCCCCCCCCCcccCCCCChhhHHH
Q psy5772 244 AFVDSGTYPVQENPKIVAVFLLEGIHQIKHLPPQGSAYWDNLWDSGNSSTPGATSNSDSMSDPGSDLHLRFIDEPLYQFY 323 (654)
Q Consensus 244 ~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~~~~~~~~s~~~s~~~~~~~~~~~~~~~~lyq~y 323 (654)
.+.....|...++||++ +.++ ||+++++...+|||| ++...
T Consensus 19 vvrAkf~F~gsNnDELs----f~Kg-DvItVTq~eeGGWWE------------GTlng---------------------- 59 (661)
T KOG2070|consen 19 VVRAKFNFQGSNNDELS----FSKG-DVITVTQVEEGGWWE------------GTLNG---------------------- 59 (661)
T ss_pred EEEEEeecccCCCceec----cccC-CEEEEEEeccCccee------------ccccC----------------------
Confidence 45677789999999999 8888 999999999999996 33322
Q ss_pred HHHHHHhhhccCCCCCcccccCCCCCCCCcccccCCCCCCCcccccCccccChhhhccCCHHHHHHHHHHHHHHHHHHHH
Q psy5772 324 NACIAELQFNEGSVENGYEEIGSSPMRTSMLEIIAPPHMNRSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASY 403 (654)
Q Consensus 324 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~v~~~~~~~~l~~~~~krq~~i~ELi~TE~~Y 403 (654)
.|+|+|++|+.....-..-+--+..|.....|+ ++-......|.-|++.+|+||+.|
T Consensus 60 ----------------------~TGWFPsnYV~eik~e~pLs~~~~~~~~~~k~~-~t~~~~~~Yr~vVLk~~lesEkey 116 (661)
T KOG2070|consen 60 ----------------------RTGWFPSNYVREIKSEKPLSPKSGTLKSPPKGF-DTTAINKSYRNVVLKNILESEKEY 116 (661)
T ss_pred ----------------------ccCccchHHHHHHhhcCCCCccccCCCCCcccc-cccccchhHHHHHHHHHHHHHHHH
Confidence 344555555432221100000010111101111 122223367888999999999999
Q ss_pred HHHHHHHHHHHccCCCCCcCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcccchhhhHHH
Q psy5772 404 FKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIK 483 (654)
Q Consensus 404 v~~L~~l~~~f~~~~~l~~~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~~~~~i~~if~~~~~~~~~~~Y~~ 483 (654)
++.|..+...|+. ||+...+|+..+...|.+|+++|+.+|+.++.+||++.......++||.+|+..++ .+..+|..
T Consensus 117 ~~eLq~lL~t~L~--Plq~s~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~~~~~~q~RVGg~fln~ap-~mkt~~~a 193 (661)
T KOG2070|consen 117 SKELQTLLSTYLR--PLQTSEILSSAEYSYLMGNFEEICTFQQDLVQQLEECTKLPEAQQRVGGCFLNLAP-QMKTLYLA 193 (661)
T ss_pred HHHHHHHHHHHHh--hhhhccccchHHHHHHhcchHHhHhHHHHHHHHHHHhhcCchhhhhhhhHHHhhhH-HHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999888788899999999999 99999999
Q ss_pred hhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHHHHHHHHHhCCCCCcchHHHHHHHH
Q psy5772 484 YCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLA 563 (654)
Q Consensus 484 Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~lLL~~llk~t~~~~~d~~~l~~al~ 563 (654)
||.||+.|+..|.+... +..+|++...... ..-+-|..-|.+|+.|+-||+.||++|-++.+..|||+.+++++..
T Consensus 194 YcanHP~AV~VL~k~~d---ELek~me~Qgass-pg~lvLttgLSkPfrrldkY~~lLQELERhme~~HpDrgD~qrs~a 269 (661)
T KOG2070|consen 194 YCANHPSAVNVLTKHSD---ELEKFMETQGASS-PGILVLTTGLSKPFRRLDKYPTLLQELERHMEDYHPDRGDIQRSMA 269 (661)
T ss_pred HHhcCchhhhHHHHhHH---HHHHHHHhcCCCC-CCeEEEecccchHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 99999999999987655 5666666543322 2236788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCceEEEEeeeEEEeccccchhhcccccccccceEEE
Q psy5772 564 TLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNL 643 (654)
Q Consensus 564 ~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~~~~R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~l 643 (654)
.++.+...|.+.+++.|- +|..|..-+..+. ..-++.-+..++-|.+.+.. .+...+ ++|+
T Consensus 270 vfk~~~~~Cq~lRkqKEl--eLqiLt~~i~~w~-----g~d~s~lG~iiymg~v~Vqy--------~~ad~~----dRy~ 330 (661)
T KOG2070|consen 270 VFKNLSAQCQELRKQKEL--ELQILTEPIRNWE-----GDDISTLGNIIYMGQVLVQY--------AGADEK----DRYL 330 (661)
T ss_pred HHHHHHHHHHHHHhhhhh--hhhhhcccccccc-----cchhhhccceEeeeehhhhh--------cCcchh----hhee
Confidence 999999999998887773 3444444443221 12235556777778776543 122223 7899
Q ss_pred EecCCeeecc
Q psy5772 644 FLFTDLHPVA 653 (654)
Q Consensus 644 fLFnD~Llit 653 (654)
.||..+|++-
T Consensus 331 ~LF~~~llfl 340 (661)
T KOG2070|consen 331 LLFPNVLLFL 340 (661)
T ss_pred eeccceeeee
Confidence 9999999874
No 9
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.98 E-value=5e-32 Score=260.51 Aligned_cols=179 Identities=30% Similarity=0.468 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCCC-CChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcCc-ccccHH
Q psy5772 389 LQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNI-LSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI-LLTNIC 466 (654)
Q Consensus 389 rq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~-l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~-~~~~i~ 466 (654)
|++|++||++||++||++|+.+.+.|+. |+..... +++.+...||+|+++|+.+|+.|+.+|+.+..++. ....||
T Consensus 1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~--~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~ 78 (181)
T cd00160 1 RQEVIKELLQTERNYVRDLKLLVEVFLK--PLDKELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEWDKSGPRIG 78 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCcccchHH
Confidence 6899999999999999999999999999 9876666 89999999999999999999999999999998875 667899
Q ss_pred HHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHHHHHHHHH
Q psy5772 467 EIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILT 546 (654)
Q Consensus 467 ~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~lLL~~llk 546 (654)
++|.++++ ++.+|..||.|++.+...+.++++.++.|.+|++.++. .+++++|.+||++|+||++||++||++|++
T Consensus 79 ~~f~~~~~--~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~--~~~~~~l~~~L~~PvQRl~rY~lLL~~l~k 154 (181)
T cd00160 79 DVFLKLAP--FFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAES--ECGRLKLESLLLKPVQRLTKYPLLLKELLK 154 (181)
T ss_pred HHHHHhhh--HHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHH--hcccCCHHHHhhhhHHHhchHHHHHHHHHH
Confidence 99999999 99999999999999999999999889999999999887 567899999999999999999999999999
Q ss_pred hCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy5772 547 RLRPNHSEYETCHTTLATLNKIVHECN 573 (654)
Q Consensus 547 ~t~~~~~d~~~l~~al~~i~~l~~~~n 573 (654)
+||++|+|+..++.|++.++++++.||
T Consensus 155 ~t~~~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 155 HTPDGHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999987
No 10
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.98 E-value=7.4e-32 Score=259.07 Aligned_cols=178 Identities=30% Similarity=0.524 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCC-CCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcC-cccccHHHHH
Q psy5772 392 AKFELITSEASYFKSLTVLEKHFIASPLLDDVN-ILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS-ILLTNICEIV 469 (654)
Q Consensus 392 ~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~-~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~-~~~~~i~~if 469 (654)
||+||++||++||++|+.+.+.|+. |+...+ .++..+...||+|+++|+.+|+.|+.+|+++..++ .....||++|
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~--~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f 78 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLK--PLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDDSPERIGDVF 78 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 5899999999999999999999999 998666 89999999999999999999999999999999887 4678999999
Q ss_pred HHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHHHHHHHHHhCC
Q psy5772 470 YQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLR 549 (654)
Q Consensus 470 ~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~lLL~~llk~t~ 549 (654)
.++.+ ++.+|..||.|++.+...+.+ ...++.|..|+++++..+.+++++|.+||++||||++||++||++|+++|+
T Consensus 79 ~~~~~--~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~ 155 (180)
T smart00325 79 LKLEE--FFKIYSEYCSNHPDALELLKK-LKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQRLTKYPLLLKELLKHTP 155 (180)
T ss_pred HHhhH--HHHHHHHHHHhHHHHHHHHHH-hhcChhHHHHHHHHhCChhhccCCHHHHHhHHHHHhccHHHHHHHHHHhCC
Confidence 99966 999999999999999999999 566999999999999999998899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHH
Q psy5772 550 PNHSEYETCHTTLATLNKIVHECNE 574 (654)
Q Consensus 550 ~~~~d~~~l~~al~~i~~l~~~~n~ 574 (654)
++|+|+..+..|++.++.++..||+
T Consensus 156 ~~~~d~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 156 EDHEDREDLKKALKAIKELANQVNE 180 (180)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999985
No 11
>KOG3518|consensus
Probab=99.97 E-value=2.6e-30 Score=250.52 Aligned_cols=243 Identities=21% Similarity=0.336 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC---cCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy5772 387 RKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD---DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLT 463 (654)
Q Consensus 387 ~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~---~~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~~~~ 463 (654)
.....+..||++||++||++|+.+++.|+. -+. .+--++.+++..+||||++|+.|+..++++|+.+-.+. -
T Consensus 120 ~~ldriaieildtertyvedl~aiie~yld--~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ldaadld~---v 194 (521)
T KOG3518|consen 120 LHLDRIAIEILDTERTYVEDLKAIIEDYLD--CIREDQEKLKLGLDAISALFGCIEDIFAFNKELLNDLDAADLDC---V 194 (521)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhcccch---H
Confidence 344569999999999999999999999998 443 34456778999999999999999999999999875443 2
Q ss_pred cHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHHHHHH
Q psy5772 464 NICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDA 543 (654)
Q Consensus 464 ~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~lLL~~ 543 (654)
.|+.||..... -|..|+.||.||++.+.++-.+++ |+..+.++++-+..-.. .++|.+||.+|||||.+|.|+|++
T Consensus 195 ~ia~cfve~s~--efe~yieyctny~rmmatl~~~~q-~~ilaka~qerq~al~h-sl~l~ayllkpvqrilkyhlfle~ 270 (521)
T KOG3518|consen 195 AIAECFVEKSE--EFEDYIEYCTNYHRMMATLTECMQ-NKILAKAFQERQEALKH-SLPLGAYLLKPVQRILKYHLFLEE 270 (521)
T ss_pred HHHHHHHhcch--hHHHHHHHHhhhHHHHHHHHHHHH-hHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 68999999998 999999999999999999999999 99888888775544333 399999999999999999999999
Q ss_pred HHHhCCCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCceEEEEeeeEEEe
Q psy5772 544 ILTRLRPNH--SEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVN 621 (654)
Q Consensus 544 llk~t~~~~--~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~~~~R~Li~~G~l~~~~ 621 (654)
|.++.+.+. +++..+..|.+.|.....+||+.+++.|..+++.+|+..+.-++.+.-.+|-++.-+.|+.+|.+...
T Consensus 271 i~k~l~~~thpeel~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lqkwkadeiqi~dlsaygdllleatfr~a- 349 (521)
T KOG3518|consen 271 IEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQKWKADEIQIPDLSAYGDLLLEATFRIA- 349 (521)
T ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccCCchhhhHHHHHHHHHHHh-
Confidence 999999865 67889999999999999999999999999999999999997665444456667777788877776654
Q ss_pred ccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 622 VDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 622 ~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
..+. .+.+|||+.+|+||
T Consensus 350 ----------gak~----~rllflfdellli~ 367 (521)
T KOG3518|consen 350 ----------GAKN----ERLLFLFDELLLIT 367 (521)
T ss_pred ----------cccc----cchHHHHHhHHhhe
Confidence 2233 67999999999986
No 12
>KOG2996|consensus
Probab=99.96 E-value=3.7e-29 Score=257.65 Aligned_cols=243 Identities=22% Similarity=0.281 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcCcccccH
Q psy5772 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLTNI 465 (654)
Q Consensus 386 ~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~~~~~i 465 (654)
..||.-.+.||-+||+.|++.|..+.++|+. || +.++++.+...||.||++|..+|..||.+++....... -+.+
T Consensus 195 ~dkRncClrEi~~TE~kY~~tL~sI~k~f~~--PL--k~~l~~ad~~ivFiNieel~klHt~ll~ei~~sv~v~~-~qtl 269 (865)
T KOG2996|consen 195 TDKRNCCLREIQQTEEKYTQTLESIEKTFME--PL--KRFLPPADYNIVFINIEELNKLHTALLAEIEYSVKVAG-GQTL 269 (865)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HhcCChhhhheeEecHHHHHHHHHHHHHHhHHHhhCCC-cccH
Confidence 4789999999999999999999999999999 99 89999999999999999999999999999999876542 2689
Q ss_pred HHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHHHHHHHH
Q psy5772 466 CEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAIL 545 (654)
Q Consensus 466 ~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~lLL~~ll 545 (654)
+.+|+++-+ -|-+|..||+|.+.|.+.+.++.+.+..+..-+++|.......+..|.++|..||||+.+|+|||++|+
T Consensus 270 ~qVFikyke--r~liYG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~nngkF~l~DLL~VPmQRvlKYhLLLkEL~ 347 (865)
T KOG2996|consen 270 YQVFIKYKE--RLLIYGKYCSNVESARKLLNELLKTREDVSRKLEECTARANNGKFTLRDLLVVPMQRVLKYHLLLKELV 347 (865)
T ss_pred HHHHHHHHH--HHhhhhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCceeeceeeeeeHHHHHHHHHHHHHHH
Confidence 999999998 899999999999999999999999999999999999988886779999999999999999999999999
Q ss_pred HhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCceEEEEeeeEEEecccc
Q psy5772 546 TRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSK 625 (654)
Q Consensus 546 k~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~~~~R~Li~~G~l~~~~~~~~ 625 (654)
|+|....++. .|+.|+++|+.++..+|+.+|..|....+.+++..|+-. ..|+..=+| .--.|+|.+.+.
T Consensus 348 kht~~a~ek~-~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIenL-----~~pl~~~GR-pkiDGElki~s~--- 417 (865)
T KOG2996|consen 348 KHTDEASEKR-NLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIENL-----SQPLHDFGR-PKIDGELKITST--- 417 (865)
T ss_pred HhcccCChhh-hHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHhh-----cchHHHhCC-CCcCceEEEeeh---
Confidence 9997766666 999999999999999999999999999999999988643 233333333 334589888862
Q ss_pred chhhcccccccccceEEEEecCCeeecc
Q psy5772 626 MTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 626 ~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
.+.++. ++|+|||+-++|+|
T Consensus 418 ----~~~tkq----dRyiFLfDkvviVC 437 (865)
T KOG2996|consen 418 ----QAHTKQ----DRYIFLFDKVVIVC 437 (865)
T ss_pred ----hcCCcc----ceEEeEecceEEEe
Confidence 233444 89999999999998
No 13
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.96 E-value=5.8e-29 Score=238.67 Aligned_cols=179 Identities=32% Similarity=0.558 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-CCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHH
Q psy5772 392 AKFELITSEASYFKSLTVLEKHFIASPLLDD-VNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVY 470 (654)
Q Consensus 392 ~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~-~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~~~~~i~~if~ 470 (654)
||+||++||++|+++|+.+.+.|+. |+.. .+.+++.+...+|+|+++|+++|+.|+..|+.+...+.....||++|+
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~--~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~~~~~~~~i~~if~ 78 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLK--PLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMKEWSNIQSIGDIFL 78 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH--HHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHHhhhccchhhhhhh
Confidence 6899999999999999999999999 9987 789999999999999999999999999999999888888899999999
Q ss_pred HhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHHHHHHHHHhCCC
Q psy5772 471 QHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRP 550 (654)
Q Consensus 471 ~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~lLL~~llk~t~~ 550 (654)
+..+ ++.+|..||.+++.+...+.++.+.+..|..|++.++..+.++++++.++|++|+|||+||+++|++|+++|++
T Consensus 79 ~~~~--~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~~ 156 (180)
T PF00621_consen 79 KFEP--FLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSPESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTPP 156 (180)
T ss_dssp HHTT--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSST
T ss_pred hccc--cccceeccchheechhhhhhHHHhhccccccccccccccccccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 9555 99999999999999999999999878889999999999888889999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHH
Q psy5772 551 NHSEYETCHTTLATLNKIVHECNE 574 (654)
Q Consensus 551 ~~~d~~~l~~al~~i~~l~~~~n~ 574 (654)
+|+|+..++.|+..++++...||+
T Consensus 157 ~~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 157 DHPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999996
No 14
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.94 E-value=8.8e-28 Score=257.69 Aligned_cols=276 Identities=25% Similarity=0.368 Sum_probs=247.6
Q ss_pred CCCcccccCccccChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCCCCChh----hhhhhcCC
Q psy5772 362 MNRSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKN----DRKHLFGN 437 (654)
Q Consensus 362 ~~~~~w~~~p~v~~~~~~~~l~~~~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~l~~~----~~~~lF~n 437 (654)
+...+|..- +...+.+.++.++.|||++|.|++.||++||++|+.+.+.|++ ||....++++. -+..+|.|
T Consensus 461 eek~~w~~s---Vpk~v~~sl~~qe~kRqe~I~evi~ter~FVk~le~lRD~~~K--~L~~sn~Ip~n~r~~Fik~vf~~ 535 (1175)
T COG5422 461 EEKNLWTLS---VPKEVWESLPKQEIKRQEAIYEVIYTERDFVKDLEYLRDTWIK--PLEESNIIPENARRNFIKHVFAN 535 (1175)
T ss_pred hhhhhhhhc---CCHHHHhhCcHHHHhhhhhhhheeeeccchhhhhHHHHHHHHH--HHHHcCcCchhhHHHHHHHHHHH
Confidence 344556652 3466788999999999999999999999999999999999999 99988999876 36889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCC
Q psy5772 438 VTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPV 517 (654)
Q Consensus 438 i~~I~~~h~~fl~~Le~~~~~~~~~~~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~ 517 (654)
+.+|+.++.+|+..|..++.-.+.+..|||||++++| +|+.++.|..+++++...+.+.+..||.|+.|..+++.-..
T Consensus 536 i~~i~avn~k~~~AL~~rQ~lsPiv~~I~DifL~~vP--~Fepfiky~a~~~yaky~~erekS~np~fa~Fd~~v~rl~~ 613 (1175)
T COG5422 536 INEIYAVNSKLLKALTNRQCLSPIVNGIADIFLDYVP--KFEPFIKYGASQPYAKYEFEREKSVNPNFARFDHEVERLDE 613 (1175)
T ss_pred HHHHHHhhHHHHHHHhhcccccccccchHHHHHhhhh--hhhHHHHhhcccchhheeeeeccccCcchhhhhHHHHhcch
Confidence 9999999999999999999888999999999999999 99999999999999999999999999999999999987667
Q ss_pred CCCcCchhhhcccchhhccHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy5772 518 CQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLK 597 (654)
Q Consensus 518 ~~~l~L~s~Li~PvQRi~rY~lLL~~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~ 597 (654)
.+++.+..||.+|+.|+.||++|++++++.|.++.+|++++-++++.++++...+|-+.+.+++.--+..+.++|-|++
T Consensus 614 s~k~~ld~yLtk~~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~~~l~qql~fk~- 692 (1175)
T COG5422 614 SRKLELDGYLTKPTTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLLFKP- 692 (1175)
T ss_pred hhhhcccceecCCcccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchhhhhhhhhhccCc-
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred cccccccccCCceEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 598 EVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 598 ~~~~~~l~~~~R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
+.-.+.+....|.++++|.+..... + ........ ++++||++++|++|
T Consensus 693 e~~~lgl~D~~rkii~kgvlk~ka~-~---~td~s~~~----di~f~llDn~ll~~ 740 (1175)
T COG5422 693 EYVNLGLNDEYRKIIFKGVLKRKAK-S---KTDGSLRG----DIQFFLLDNMLLFC 740 (1175)
T ss_pred hhhcccccchhHHHHHhhhhhhhhh-c---cCCccccc----ceeeeehhhHHHHh
Confidence 5666778899999999999987751 1 00111222 89999999999987
No 15
>KOG3522|consensus
Probab=99.90 E-value=9.5e-24 Score=227.87 Aligned_cols=229 Identities=20% Similarity=0.245 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcC-CCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcCcccccHHH
Q psy5772 389 LQEAKFELITSEASYFKSLTVLEKHFIASPLLDDV-NILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICE 467 (654)
Q Consensus 389 rq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~-~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~~~~~i~~ 467 (654)
|..++.+|+.+|.+|+..|+.+++.|++ ||... .++.+..+++||.||.+|+++|+.||.+|+.+...|...+.+|+
T Consensus 1 r~~v~~~l~~~Eq~yv~sL~t~vd~y~q--pL~~~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~~qq~vga 78 (925)
T KOG3522|consen 1 RRYVLLQLIDREQSYVESLHTGVDRYVQ--PLKERKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWDEQQKVGA 78 (925)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhc--cccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4568899999999999999999999999 98854 44455789999999999999999999999999999999999999
Q ss_pred HHHHhcc-cchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHHHHHHHHH
Q psy5772 468 IVYQHVT-NKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILT 546 (654)
Q Consensus 468 if~~~~~-~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~lLL~~llk 546 (654)
.|..+.. .....+|..||+|+..|...++... .|.|.+|++ ++++| |+|||.|+|+ |+|
T Consensus 79 ~~v~~fSk~~v~~~Y~~y~nn~~~A~~~l~~~~--rpaf~~Fl~---------------l~~kP--r~P~y~lll~-mlk 138 (925)
T KOG3522|consen 79 SFVYSFSKTAVLAAYSKYVNNFKRAKCALRNKK--RPAFSKFLE---------------LMIKP--RFPRYELLLQ-MLK 138 (925)
T ss_pred HHHHhhhHHHHHHHHHHHHhchhHHHHHHHHhc--chHHHHHHH---------------HHhcc--CCchHHHHHH-Hhh
Confidence 9999886 5678999999999999999998766 799999987 89999 9999999999 999
Q ss_pred hCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCceEEEEeeeEEEeccccc
Q psy5772 547 RLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKM 626 (654)
Q Consensus 547 ~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~~~~R~Li~~G~l~~~~~~~~~ 626 (654)
+||.+|||+..|+.|+..++.+...+|+.++..+..+++..+.+.|+... ...-++..+.|+|+.+.-+....
T Consensus 139 htp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~--el~e~L~ag~r~lLl~dl~se~v----- 211 (925)
T KOG3522|consen 139 HTPLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRS--ELMEDLGAGRRQLLLQDLVSETV----- 211 (925)
T ss_pred cCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh--hhhhhcccchHHHHHHHHhhhhh-----
Confidence 99999999999999999999999999999999888777766555443221 11125666777777776655442
Q ss_pred hhhcccccccccceEEEEecCCeeecc
Q psy5772 627 TFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 627 ~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
+ ...+. .+-.|+|+|.++.+
T Consensus 212 -y--~~rk~----d~~~~~~rd~i~~~ 231 (925)
T KOG3522|consen 212 -Y--TGRKK----DRKAFLFRDLIVNT 231 (925)
T ss_pred -h--ccccc----hhhheeeeeeeeee
Confidence 1 11112 45677777777765
No 16
>KOG3520|consensus
Probab=99.90 E-value=1e-24 Score=245.03 Aligned_cols=209 Identities=22% Similarity=0.381 Sum_probs=165.4
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYE 82 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~ 82 (654)
|..|+++++++|.|+||.|.+.++.-+||||||||||+.|+|||-.+..|++.|+.|++.+++|+..||+.+++.|+.++
T Consensus 510 Fq~fvkkaeS~p~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~R 589 (1167)
T KOG3520|consen 510 FQAFVKKAESNPVCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQR 589 (1167)
T ss_pred HHHHHHHhhcchHHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999778889999999999999999999999999999999
Q ss_pred HHHHHHhhc---ccc----cccccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecC
Q psy5772 83 MLLLSRLIK---FSL----KEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKS 155 (654)
Q Consensus 83 l~~l~~~i~---~~~----~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~ 155 (654)
|.+|+++++ +.. ...+..+|. .|+||++|.|+|....++ .+++|++||+|+|||..++.
T Consensus 590 L~eiq~RlD~~s~~~~~~~~~F~kldLt--~rkLihdG~Ltwk~~~gk------------~~dv~vlLLtD~LvlLqeqD 655 (1167)
T KOG3520|consen 590 LEEIQRRLDAKSLSKYKNGEEFRKLDLT--RRKLIHDGPLTWKTARGK------------TKDVHVLLLTDILVLLQEKD 655 (1167)
T ss_pred HHHHHHhccchhhhhccccchhhhhhhh--hhheeccCceEEeeccCc------------hhhhHHHHHHHHHHHhhhcC
Confidence 999999998 211 112233333 789999999998754332 36889999999999999665
Q ss_pred CCceEEEeeccc-cceEEEEccCC-CCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccccCCCCc
Q psy5772 156 NGSYSVIDYCTR-AMMQMAAIEDS-VPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKILNSPSW 229 (654)
Q Consensus 156 ~~~~~~~~~~~~-~~l~v~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~~~~~~ 229 (654)
. +|.++.+-+. ..|.++.+-.. ...+.+..|.|.. . .+..+.|.|.|.|.++|+.||..|++++...+..
T Consensus 656 ~-Kyifksl~~~spVisL~~livRevAtd~ka~FlIs~-s--~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 656 Q-KYIFKSLDKKSPVISLQKLIVREVATDEKAFFLISM-S--DQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred c-eeEeeccccCCCceehHHHHHHHHhccccceEEEec-C--CCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 4 9999876552 23333332111 1223334444432 2 2345779999999999999999999998655443
No 17
>KOG2996|consensus
Probab=99.88 E-value=4.3e-22 Score=205.82 Aligned_cols=194 Identities=17% Similarity=0.212 Sum_probs=147.5
Q ss_pred HHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 7 WFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLL 86 (654)
Q Consensus 7 l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~l~~l 86 (654)
|..|-....-++.+|.++|+.||||++||+|||++|+|||.... +..+|++|+++|++++..||+.+|..|....+-++
T Consensus 311 leEct~r~nngkF~l~DLL~VPmQRvlKYhLLLkEL~kht~~a~-ek~~LkeAleaM~Dla~yiNEvkRD~etlr~I~ef 389 (865)
T KOG2996|consen 311 LEECTARANNGKFTLRDLLVVPMQRVLKYHLLLKELVKHTDEAS-EKRNLKEALEAMEDLAQYINEVKRDNETLRVIDEF 389 (865)
T ss_pred HHHHHhhhcCCceeeceeeeeeHHHHHHHHHHHHHHHHhcccCC-hhhhHHHHHHHHHHHHHHHhHhhcchHHHHHHHHH
Confidence 56677778888999999999999999999999999999996554 55599999999999999999999999999999999
Q ss_pred HHhhcccccccccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCCceEEEeecc
Q psy5772 87 SRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCT 166 (654)
Q Consensus 87 ~~~i~~~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~ 166 (654)
|.+|+. ...||..-+| ---+|++...+..++. + +++|+|||+.++|+||++ +.+|..+..+.
T Consensus 390 q~SIen-----L~~pl~~~GR-pkiDGElki~s~~~~t-------k----qdRyiFLfDkvviVCKrk-G~sy~lke~i~ 451 (865)
T KOG2996|consen 390 QLSIEN-----LSQPLHDFGR-PKIDGELKITSTQAHT-------K----QDRYIFLFDKVVIVCKRK-GDSYELKEIIY 451 (865)
T ss_pred HHhHHh-----hcchHHHhCC-CCcCceEEEeehhcCC-------c----cceEEeEecceEEEeecc-CcchhHHHHHH
Confidence 999963 3455555555 4567888766533221 1 577899999999999977 45777776665
Q ss_pred ccceEEEEccCCCCCC-------CCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 167 RAMMQMAAIEDSVPPT-------NKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 167 ~~~l~v~~~~~~~~~~-------~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
+....+.+........ -.+.|.+....+.+| |.|+|.|++-|+.||....-++
T Consensus 452 l~~y~m~d~~~~~kd~kk~~~~~ws~~f~lI~tqg~ng----l~fy~Kte~~kkkWmeqfema~ 511 (865)
T KOG2996|consen 452 LNAYKMSDDPIDDKDNKKVSTITWSYGFYLIHTQGRNG----LEFYCKTEDLKKKWMEQFEMAK 511 (865)
T ss_pred HHhhccccCCCCchhhhhccceeeeeeEEEEEEcCCcc----eEEEEecHHHHHHHHHHHHHHH
Confidence 5555555533222111 134566655555555 9999999999999998444333
No 18
>KOG3521|consensus
Probab=99.87 E-value=6.5e-23 Score=215.11 Aligned_cols=201 Identities=22% Similarity=0.284 Sum_probs=159.0
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYE 82 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~ 82 (654)
|-.||.|||+++.|+|+.|.|.|++||||||||+|||+.++|+| +|..+.+.+...+++++.++.+||..+++.+..++
T Consensus 300 FrafvtW~Ekqk~c~RqkL~D~l~kPmQRLTKY~LLLkAVlK~t-~d~~e~Eai~aMi~svEsf~~~vN~~l~qrqerer 378 (846)
T KOG3521|consen 300 FRAFVTWAEKQKNCDRQKLIDTLSKPMQRLTKYPLLLKAVLKVT-TDEREREAISAMIDSVESFTAHVNKELRQRQERER 378 (846)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhHHHHhhhhHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 78999999999999999999999999999999999999999999 66688999999999999999999999999999999
Q ss_pred HHHHHHhhccc-c---------cccc----cCCcc--------cCCceEEeecceEEEecCccchhhhhcccccccceEE
Q psy5772 83 MLLLSRLIKFS-L---------KEVK----CLPVI--------SSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLN 140 (654)
Q Consensus 83 l~~l~~~i~~~-~---------~~~~----~~~l~--------~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~ 140 (654)
|..+-.+|+-. . +..+ .++|. ...|.|+++|++...+.+ ..| .+||
T Consensus 379 L~~vm~rIe~ydvVd~~sdevdknLK~~~~~~Dl~apm~g~~~~htRqLlleGdlrmKegk--------~sK----~DVh 446 (846)
T KOG3521|consen 379 LAAVMRRIEGYDVVDQDSDEVDKNLKLFLNLLDLTAPMHGRKPEHTRQLLLEGDLRMKEGK--------GSK----ADVH 446 (846)
T ss_pred HHHHHHhcCcccccCCcHHHHHHHhhhhhhhhccccCCCCCChhhhhhhhhccceecccCC--------Ccc----ccee
Confidence 99988888631 1 0001 11111 235999999999765432 222 4788
Q ss_pred EEecCCeEEEEEec--CCCceEEEee-ccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhc
Q psy5772 141 LFLFTDLLVITKKK--SNGSYSVIDY-CTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVS 217 (654)
Q Consensus 141 ~fLF~d~Ll~~k~~--~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~ 217 (654)
||||+|+||+||+. +.++.+|..- +.+..+.++-..| .|.|.+.+....+.....|+++|+.++...+|+.
T Consensus 447 cfLfTDllLVcK~v~k~~drlKVIRpPll~dklv~q~~~d------pnsf~lVhLtEFh~a~~ayt~hcs~p~d~~~W~D 520 (846)
T KOG3521|consen 447 CFLFTDLLLVCKKVQKKADRLKVIRPPLLMDKLVCQYLRD------PNSFLLVHLTEFHTAQAAYTMHCSGPEDTLRWTD 520 (846)
T ss_pred eeeehhHHHHhHHHhhhcccceeeccchhhcceeeeecCC------CCceEEEeechhhhhhhhheeecCChhhHHHHHH
Confidence 99999999999953 2456666543 3566776666543 3678877777776666679999999999999998
Q ss_pred ccCcc
Q psy5772 218 NKSDK 222 (654)
Q Consensus 218 ~~~~~ 222 (654)
.+.++
T Consensus 521 ~l~~A 525 (846)
T KOG3521|consen 521 MLKMA 525 (846)
T ss_pred HHHHH
Confidence 55433
No 19
>KOG3519|consensus
Probab=99.87 E-value=1.2e-21 Score=223.97 Aligned_cols=250 Identities=25% Similarity=0.365 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCcCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcC---
Q psy5772 384 AGERKLQEAKFELITSEASYFKSLTVLEKHFIASPL-LDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS--- 459 (654)
Q Consensus 384 ~~~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~-l~~~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~--- 459 (654)
....+|..+|.|+++||+.|+++|+.+...|+. + .+....++...+..+|+|+++|+.+|..|+..|+...+..
T Consensus 332 ~~~~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~--~~~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~~~~~~~~~ 409 (756)
T KOG3519|consen 332 SLDKKRTKVIKELLDTEKNYVKDLNALCEGYLP--PQNKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQQINPELIP 409 (756)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHhhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 466889999999999999999999999999999 7 4567888999999999999999999999999999998644
Q ss_pred cccccHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHH
Q psy5772 460 ILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPL 539 (654)
Q Consensus 460 ~~~~~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~l 539 (654)
.....||.+|+.+.+ .|.+|..||.+++.+...+.++++ ++.+..|+..+.......+.+|.++|++|+||+.+|||
T Consensus 410 ~~~~~ig~~fL~~~~--~f~~ys~yc~~h~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~L~s~l~~pvqri~kYPL 486 (756)
T KOG3519|consen 410 PSLSEIGPVFLEQLD--VFKIYSEYCNNHPKAQKKLSKLKK-KKKVKEFLEACNLLQQHSNSSLSSFLLKPVQRICKYPL 486 (756)
T ss_pred hhHhHHHHHHHHhcc--cceeechhhhccchHHHHHHHHhh-hhhhhhhhhhhhhhhccccCCchhhhccHHHHhccCch
Confidence 667889999999999 888998899999999999999998 89999999988776666668999999999999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---cccccccccccccccCCceEE
Q psy5772 540 LFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSR----L---IKFSLKEVKCLPVISSSRWLV 612 (654)
Q Consensus 540 LL~~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~----~---i~~~~~~~~~~~l~~~~R~Li 612 (654)
+|.++++.|+.+|.||..+..|...++.+...||+..+..+.+.....-.. . ++. +.+-.+...+..++
T Consensus 487 ll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~~q~~~~~~~~----~~~~~~~~~Ss~l~ 562 (756)
T KOG3519|consen 487 LLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAAEQSGSNSLEL----SEGELLLDNSSELL 562 (756)
T ss_pred hhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhhhhccchhhhc----cCCCccccccccee
Confidence 999999999999999999999999999999999999999998544333222 2 211 22223333677777
Q ss_pred EEeeeEEEeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 613 RSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 613 ~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
..|+..... .+... ....+.|||+..+++|
T Consensus 563 ~~~~~~~~~-----q~~~~------~~~~~~~l~~~~~~~c 592 (756)
T KOG3519|consen 563 LSGPSLKIR-----QFQSD------SQQRQFFLFDNQLVYC 592 (756)
T ss_pred eccchhhhh-----hhhcc------hhhhhheecccceeEe
Confidence 777776553 11011 1256899999988887
No 20
>KOG4305|consensus
Probab=99.84 E-value=4.3e-21 Score=215.59 Aligned_cols=206 Identities=21% Similarity=0.276 Sum_probs=159.5
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRL-RPNHSEYETCHTTLATLNKIVHECNEEARKMERYY 81 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t-~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~ 81 (654)
|+.||++|+++|+|++|+|.+||.+|+||+.||||||++||||| |..|||++.|.+|++++++++..||...++.|+..
T Consensus 452 Fa~fl~~~~~sp~~rkl~L~~FL~kp~sRl~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~ 531 (1029)
T KOG4305|consen 452 FARFLKECESSPESRKLDLVSFLTKPTSRLQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQGSGEAENRC 531 (1029)
T ss_pred HHHHHHHHHhChhhhccchhhhhccccchhheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChhhccchhhh
Confidence 89999999999999999999999999999999999999999999 77889999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEec----CCC
Q psy5772 82 EMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKK----SNG 157 (654)
Q Consensus 82 ~l~~l~~~i~~~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~----~~~ 157 (654)
++..++.++-|..++.....+.++.|.|+..|.+..... .+.+--+..|.|||+|.||++++. +.+
T Consensus 532 ~l~~l~~qllfe~~e~~~L~l~d~~R~l~fkgil~~~~~----------~~~~~~~~~~~fLl~d~lLLt~~~k~~~~~~ 601 (1029)
T KOG4305|consen 532 RLEELSQQLLFEPGEAVNLGLNDPERKLIFKGILKRKEL----------SKTDGTKEDYIFLLLDNLLLTRKVKQNNKRH 601 (1029)
T ss_pred hHHHHHHHhhccccccccccccChhhhcceeeeeeeccc----------cccCCCccceeehhhhhhhhhhhhhhccccc
Confidence 999999999887555567777899999999998853321 111111123799999999999753 234
Q ss_pred ceEEEe-eccccceEEEEccC----------------------CCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhh
Q psy5772 158 SYSVID-YCTRAMMQMAAIED----------------------SVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSL 214 (654)
Q Consensus 158 ~~~~~~-~~~~~~l~v~~~~~----------------------~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~ 214 (654)
+|++.. -+|+..|.+.-.++ ...+..++.|... . ......|++++.+...+++
T Consensus 602 ~~kvf~RPiPl~lL~~~~~~dn~~~k~Y~sp~~~~~~~v~l~~~~~s~~~~~~~~~--~--ga~~~~ftly~~s~~~r~~ 677 (1029)
T KOG4305|consen 602 RHKVFSRPIPLDLLSLSPSEDNPSYKSYKSPIPLASVTVALPDKPTSNVKNFFLYL--G--GARGASFTLYAESLNGRDQ 677 (1029)
T ss_pred cceeeccCcchhhhcccccccchhhhccCCCCcchhhhhhcccCCCCCccchhhee--c--cccceEEEeeccchHHhhh
Confidence 677765 33555555442222 1123333422221 1 2234679999999999999
Q ss_pred hhcccCcc
Q psy5772 215 NVSNKSDK 222 (654)
Q Consensus 215 W~~~~~~~ 222 (654)
|+++|.++
T Consensus 678 w~ekI~~a 685 (1029)
T KOG4305|consen 678 WVEKIKQA 685 (1029)
T ss_pred HHhhhhHH
Confidence 99988643
No 21
>KOG3518|consensus
Probab=99.83 E-value=1e-21 Score=190.93 Aligned_cols=198 Identities=19% Similarity=0.288 Sum_probs=152.9
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNH--SEYETCHTTLATLNKIVHECNEEARKMERY 80 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~--~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~ 80 (654)
+|.+++.-+. ..-..|+|.+||++|||||.||.|+|.+|.||.|.+. +++..+..|.+.|..++.+||+.+++.|..
T Consensus 233 laka~qerq~-al~hsl~l~ayllkpvqrilkyhlfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~indekkkaeh~ 311 (521)
T KOG3518|consen 233 LAKAFQERQE-ALKHSLPLGAYLLKPVQRILKYHLFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDEKKKAEHA 311 (521)
T ss_pred HHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4555554433 4556899999999999999999999999999999866 678899999999999999999999999999
Q ss_pred HHHHHHHHhhc-ccccccccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCCce
Q psy5772 81 YEMLLLSRLIK-FSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSY 159 (654)
Q Consensus 81 ~~l~~l~~~i~-~~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~ 159 (654)
.++.+||..+. |..++ -..|-++..+.|+.+|.+..... | ..+.+|||+.+||++|++ +..|
T Consensus 312 erlgeiqs~lqkwkade-iqi~dlsaygdllleatfr~aga-----------k----~~rllflfdellli~kkr-~anf 374 (521)
T KOG3518|consen 312 ERLGEIQSLLQKWKADE-IQIPDLSAYGDLLLEATFRIAGA-----------K----NERLLFLFDELLLITKKR-DANF 374 (521)
T ss_pred HHHHHHHHHHHhccccc-ccCCchhhhHHHHHHHHHHHhcc-----------c----ccchHHHHHhHHhheeec-CCce
Confidence 99999999873 33222 23455666777888888843321 1 234599999999999966 4589
Q ss_pred EEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCcccc
Q psy5772 160 SVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKIL 224 (654)
Q Consensus 160 ~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~ 224 (654)
+++.|+.-..+.+.++--.. ..-.|.+....+.. -.|+|+|+|.++|..||.++.+.++
T Consensus 375 ~~k~~ilc~nlmlne~icpe---eplsfqv~~fdnpk---aq~~fma~sme~kr~wm~elkrlil 433 (521)
T KOG3518|consen 375 TCKAHILCGNLMLNEVICPE---EPLSFQVFHFDNPK---AQHTFMAKSMEDKRLWMLELKRLIL 433 (521)
T ss_pred eeehhhhccchhhheeccCC---CCceeEEEecCCcc---hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999987777776643222 23567665544432 3389999999999999998877764
No 22
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.83 E-value=6.3e-20 Score=159.16 Aligned_cols=110 Identities=35% Similarity=0.585 Sum_probs=93.7
Q ss_pred ceEEeecceEEEecCccc-hhhhhcccccccceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCC----
Q psy5772 107 RWLVRSGSMNFVNVDSKM-TFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPP---- 181 (654)
Q Consensus 107 r~li~~G~l~~~~~~~~~-~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~---- 181 (654)
|||+++|+|+.+...+.. .+++|.. .+++|+|||||+||+||+|.+++|.|++|++++.+.|+.++....+
T Consensus 1 RwLvK~GEL~~l~~~~~~~~~~~k~~----~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 1 RWLVKRGELTQLEERGSSNILRKKLK----ARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred CceEEEeeEEEEeccCCcchhccccc----CCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeeccccccccccc
Confidence 799999999988654321 2333333 3677899999999999999999999999999999999998765542
Q ss_pred ----CCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccC
Q psy5772 182 ----TNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 182 ----~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~ 220 (654)
..+|.|.+++..+++|+..+++|+|+|+++|.+||++++
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999885
No 23
>KOG4240|consensus
Probab=99.78 E-value=1.3e-19 Score=202.84 Aligned_cols=223 Identities=21% Similarity=0.305 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC------cCCCCChhhhhhhcCCHHHHHHHHHH-HHHHHHHHHhcC
Q psy5772 387 RKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD------DVNILSKNDRKHLFGNVTAVRKCSER-LLAALEQCWQDS 459 (654)
Q Consensus 387 ~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~------~~~~l~~~~~~~lF~ni~~I~~~h~~-fl~~Le~~~~~~ 459 (654)
+++..++.|+|+||+.||++|....+.|+. .+. ..++|. -...||+|+++|+++|.+ ||..|+.+-..+
T Consensus 631 rl~~~~m~ellqterayv~~L~~~l~~y~~--e~d~~~~~i~~~~Ln--k~~~ifgnmeeiy~fhn~~~L~eLe~y~~~p 706 (1025)
T KOG4240|consen 631 RLKRHVMRELLQTERAYVRDLEECLEGYLA--EMDSPMKEILPPLLN--KKEIIFGNMEEIYEFHNDIFLSELEKYEQLP 706 (1025)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--Hhhchhhhccccccc--hHHHHHhhHHHHHHHHhhHHHHHhhhhccCH
Confidence 556789999999999999999999999987 443 223344 578999999999999954 999999987665
Q ss_pred cccccHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHH
Q psy5772 460 ILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPL 539 (654)
Q Consensus 460 ~~~~~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~l 539 (654)
..||+||+.+++ +|.+|..||.|.+.+..++..... -+.|.+ ++...... +.+.|||++|+|||++|.+
T Consensus 707 ---E~Vg~~fle~~d--~fqly~~Yc~nke~S~ql~~~~a~-~~ff~e----~qr~~~l~-l~~~S~l~kpvqritkYql 775 (1025)
T KOG4240|consen 707 ---EDVGHCFLERAD--DFQLYAKYCQNKELSNQLIRLHAG-CSFFQE----IQRRHGLE-LSISSYLIKPVQRITKYQL 775 (1025)
T ss_pred ---HHHHHHHHHHHH--HHHHHHHHHhCCcchHHHHHhccc-ccccHH----HHHHhhhh-hhhHHHHhHHHHHHHHHHH
Confidence 479999999999 889999999999999988875444 333433 33322222 5899999999999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCceEEEEeeeEE
Q psy5772 540 LFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNF 619 (654)
Q Consensus 540 LL~~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~~~~R~Li~~G~l~~ 619 (654)
||+.+++.+. .-...+++|++.|-.+...+|+.+.-..- .. .+ ..+..-+.+|.+|.+.+
T Consensus 776 llkell~~c~---e~~~~lkd~l~~ml~v~k~~nd~mh~~~~----~~----~d---------~nl~~lg~~~~q~~f~v 835 (1025)
T KOG4240|consen 776 LLKELLKCCC---EGTGDLKDALEVMLSVPKKVNDSMHLIAL----EG----YD---------GNLDELGKLIMQDSFSV 835 (1025)
T ss_pred HHHHHHHhhh---hchHHHHHHHHHHHhhhhhcccccCHHHH----hh----hh---------hhHHHHHHHHhhcccee
Confidence 9999999553 44567888999999999999998753221 11 11 12234467889999998
Q ss_pred EeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 620 VNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 620 ~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
|.+ .+. .+| +.++|+|||.=.+|+|
T Consensus 836 w~~-k~l--~rk------~~erhlfl~ei~ivf~ 860 (1025)
T KOG4240|consen 836 WKP-KAL--ARK------GMERHLFLFEISIVFC 860 (1025)
T ss_pred ecH-HHH--hhh------hHHHHHHHHHHHHHHH
Confidence 852 211 123 3378999998877775
No 24
>KOG3531|consensus
Probab=99.76 E-value=5.7e-20 Score=197.61 Aligned_cols=237 Identities=20% Similarity=0.292 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcCcc--------c
Q psy5772 391 EAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSIL--------L 462 (654)
Q Consensus 391 ~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~~--------~ 462 (654)
.+..|+..||++|.++|.++...|.. .+-....++...+..+|.|++.+.++|+.||+++++++..|.. .
T Consensus 536 F~~kel~~tERty~kdleV~tt~Frs--t~v~~dam~~~~~s~l~~~~~pl~k~h~~fLk~ieeria~weGrsnani~~~ 613 (1036)
T KOG3531|consen 536 FIVKELSDTERTYLKDLEVITTWFRS--TVVKEDAMPNALKSLLFHNSTPLTKFHEGFLKEIEERIALWEGRSNANIVIE 613 (1036)
T ss_pred eeecccccccccchhccceeeeeecc--eeecCcccccchhhhhccCCChhhHHHHHHHHHHHHHHHhccCCCCCceeee
Confidence 48899999999999999999988887 6666888899999999999999999999999999999877641 1
Q ss_pred ccHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHHHHHH
Q psy5772 463 TNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFD 542 (654)
Q Consensus 463 ~~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~lLL~ 542 (654)
.+|||+.++++. ..++|..|...+..+...+....+-..+|..+.++.+....|. +++..||.+|++|+..|.++|+
T Consensus 614 ~~igDVmLk~m~--~l~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v~kefelqkvcy-LP~~~fllkpL~rllhyq~~Le 690 (1036)
T KOG3531|consen 614 QRIGDVMLKNMR--SLKITTTTTQRHAETLTTLTTTSKVLTRLEAVYKEFELQKVCY-LPLNTFLLKPLSRLLHYQLALE 690 (1036)
T ss_pred eccCCcchhhhh--ccchhhhhHHhHHHHHHHHhhcchhhhhHHhhhccHHhhhccc-cccchhhhccccHHHHHHHHHH
Confidence 459999999998 9999999999999999999887777789999999999888887 9999999999999999999999
Q ss_pred HHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCceEEEEeeeEEEec
Q psy5772 543 AILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNV 622 (654)
Q Consensus 543 ~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~~~~R~Li~~G~l~~~~~ 622 (654)
.|+.+.+++|.||.+...+...+-+....+...+.+++ +|.+|++.+..- -+++.++|.++++|.+...+
T Consensus 691 RLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e---~l~Elkrdl~s~------e~LV~p~rE~ir~g~llK~s- 760 (1036)
T KOG3531|consen 691 RLCGHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTE---KLRELKRDLASI------ENLVHPGREFIRSGCLLKLS- 760 (1036)
T ss_pred HhhcccCCCccchHHHhhcccccccccccccccchhHH---HHHHHHHhhhcc------ccccCcchhhhhcCCchhhc-
Confidence 99999999999999999999988888888877666665 889999887532 28999999999999999885
Q ss_pred cccchhhcccccccccceEEEEecCCeeeccC
Q psy5772 623 DSKMTFARKLNKTHFYAKLNLFLFTDLHPVAG 654 (654)
Q Consensus 623 ~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit~ 654 (654)
+|.- .++.+|||+|+||.||
T Consensus 761 -------kkgL-----qqrmfFLfsdillyts 780 (1036)
T KOG3531|consen 761 -------KKGL-----QQRMFFLFSDILLYTS 780 (1036)
T ss_pred -------cccc-----hhhhhhhhhhhheecc
Confidence 2222 2679999999999986
No 25
>KOG0689|consensus
Probab=99.75 E-value=5.9e-19 Score=185.07 Aligned_cols=228 Identities=23% Similarity=0.374 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcCCCCChh---hhhhhcCCHHHHHHHHHH-HHHHHHHHHhcC
Q psy5772 384 AGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKN---DRKHLFGNVTAVRKCSER-LLAALEQCWQDS 459 (654)
Q Consensus 384 ~~~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~l~~~---~~~~lF~ni~~I~~~h~~-fl~~Le~~~~~~ 459 (654)
....++..++.|++.||..||++|.....+|+. .+... -++.. ....||+|+.+|+++|.. |+.+++.+....
T Consensus 58 ~~~~k~~~v~~e~iaTE~~yv~~l~~~~~~y~~--~~~~~-~lp~~lrg~~~iifgni~~i~~~h~~~fl~e~e~~~r~~ 134 (448)
T KOG0689|consen 58 KALKKRSFVLDELIATEVDYVKDLKSVVENYIE--LLDAE-DLPEDLRGKDKIIFGNIKEIYEFHKKEFLPELERCERDP 134 (448)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhccccccccccc--ccccc-CCChhccCCceeeechHHHHHHhhcccCcchHHHhhhCH
Confidence 344788899999999999999999999999998 65422 22222 368999999999999977 589999887664
Q ss_pred cccccHHHHHHHhcccchhh-hHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhccHH
Q psy5772 460 ILLTNICEIVYQHVTNKSFN-IYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLP 538 (654)
Q Consensus 460 ~~~~~i~~if~~~~~~~~~~-~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~ 538 (654)
..+|.+|++|.. -+. .|..||.|.+.....+.+. .+..|++....... .++++.+||++||||+++|+
T Consensus 135 ---~~~~~~f~kh~~--k~~~~y~~y~q~kp~s~~~~~~~-----~~~~~f~~~~~~~~-~~l~l~~~l~kPiQR~~kYq 203 (448)
T KOG0689|consen 135 ---LELGQAFAKHER--KNSVLYVTYCQNKPKSDYLLAEY-----DNEAFFQEYQTQLG-HKLDLSSYLIKPVQRIMKYQ 203 (448)
T ss_pred ---HHHHHHHHHHHH--HhhhhhhhhhcCCCCCcccceec-----ccchhhHHHhhhcc-cccccchhhhhhhHHHHHHH
Confidence 468999999998 444 9999999999884333221 22344444443332 35999999999999999999
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCceEEEEeeeE
Q psy5772 539 LLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMN 618 (654)
Q Consensus 539 lLL~~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~~~~R~Li~~G~l~ 618 (654)
+||+++++.+.....|+..+.+|.+.+..+.++||+....-. ++ .|. .-+...+.|++++++.
T Consensus 204 lLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~~~~~-------l~---g~e-------~~l~~qG~l~~qd~f~ 266 (448)
T KOG0689|consen 204 LLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCNDMMQVGR-------LQ---GFE-------GDLKAQGKLRRQDEFD 266 (448)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhHhhhccch-------hc---ccc-------cchHhhccccccCccc
Confidence 999999999999999999999999999999999987653211 10 111 1234557889999988
Q ss_pred EEeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 619 FVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 619 ~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
+..... ++ ++ .+.+|||.-++|+|
T Consensus 267 v~~~~~-----~~--~~----~R~vflFe~~v~Fs 290 (448)
T KOG0689|consen 267 VSHGRA-----GK--KK----DRRVFLFERLVVFS 290 (448)
T ss_pred eeeccc-----cc--cc----hhhhhhhhhhhhhh
Confidence 875111 11 33 66899999999886
No 26
>KOG3524|consensus
Probab=99.73 E-value=9.3e-18 Score=177.91 Aligned_cols=243 Identities=20% Similarity=0.272 Sum_probs=203.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-----cCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHH
Q psy5772 381 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD-----DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQC 455 (654)
Q Consensus 381 ~l~~~~~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~-----~~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~ 455 (654)
..+....-|-.+..++..||..|+.-|..+.+.|.. +|. ..+++.+.++.++|+|+.+|..+|+.....|...
T Consensus 377 ~~psk~s~r~~~~~~~y~tesnyv~il~Ti~~lf~~--kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l 454 (850)
T KOG3524|consen 377 NYPSKLSLRVKFKEALYCTESNYVFILRTIVALFFG--KLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDL 454 (850)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHH
Confidence 344555667778889999999999999999998887 655 6789999999999999999999999999999888
Q ss_pred HhcCcccccHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCcCchhhhcccchhhc
Q psy5772 456 WQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVT 535 (654)
Q Consensus 456 ~~~~~~~~~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~ 535 (654)
...|.... . ..-+.|..|+.-+......++.+-.++|+|..|++.-+..|.|.++.|.++++.|+||++
T Consensus 455 ~~nw~e~k----------~-el~kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlp 523 (850)
T KOG3524|consen 455 AQNWIEAK----------E-ELKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLP 523 (850)
T ss_pred HHhhHHHH----------H-HHHHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhh
Confidence 87774332 2 466777777777777788888888889999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCceEEEEe
Q psy5772 536 RLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSG 615 (654)
Q Consensus 536 rY~lLL~~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~~~~R~Li~~G 615 (654)
-..+||++|.| ..+.+|...+.+|..+++++...||+-++++++.......-..|++. +-.+++.+|.++..-
T Consensus 524 svilllndl~k--~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~diegc-----pa~lvssnrsfi~~l 596 (850)
T KOG3524|consen 524 SVILLLNDMAK--KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGC-----PAILVSSNRSFIREL 596 (850)
T ss_pred HHHHHHHHHHh--hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcC-----chhheeccchHHHHh
Confidence 99999999999 46889999999999999999999999999999988888877777643 345889999999988
Q ss_pred eeE-EEeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 616 SMN-FVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 616 ~l~-~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
++. .+. +.. -.+. ....||||+|+|+||
T Consensus 597 ev~i~l~-~~~-----~~rg----~~~~l~lf~dvlei~ 625 (850)
T KOG3524|consen 597 EVSIALT-SPG-----LQRG----AKMKLFLFHDVLEIT 625 (850)
T ss_pred hhhhhhc-Ccc-----cccc----cceeeehhhhHHHHH
Confidence 875 332 111 1111 167899999999987
No 27
>KOG0689|consensus
Probab=99.62 E-value=3e-16 Score=164.79 Aligned_cols=183 Identities=14% Similarity=0.195 Sum_probs=138.7
Q ss_pred HHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 6 LWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLL 85 (654)
Q Consensus 6 ~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~l~~ 85 (654)
|.+.+++ +.-.+++|.+||++|||||+||+|||++++|.+...-.|...|.+|.+.|..+.+++|+.+..-....
T Consensus 174 ~f~~~~~-~~~~~l~l~~~l~kPiQR~~kYqlLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~~~~~l~g---- 248 (448)
T KOG0689|consen 174 FFQEYQT-QLGHKLDLSSYLIKPVQRIMKYQLLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCNDMMQVGRLQG---- 248 (448)
T ss_pred hhHHHhh-hcccccccchhhhhhhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhHhhhccchhcc----
Confidence 4444433 55668999999999999999999999999999988889999999999999999999988655433221
Q ss_pred HHHhhcccccccccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecC----CCceEE
Q psy5772 86 LSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKS----NGSYSV 161 (654)
Q Consensus 86 l~~~i~~~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~----~~~~~~ 161 (654)
|+ .. +...+.+++++++.+.....+.+ +++.+|||+.++||+|... ...|.+
T Consensus 249 ------~e------~~-l~~qG~l~~qd~f~v~~~~~~~~-----------~~R~vflFe~~v~Fse~~~~~~~~~~y~y 304 (448)
T KOG0689|consen 249 ------FE------GD-LKAQGKLRRQDEFDVSHGRAGKK-----------KDRRVFLFERLVVFSKLRKPESGTETYVY 304 (448)
T ss_pred ------cc------cc-hHhhccccccCccceeecccccc-----------chhhhhhhhhhhhhhhhhcCCCCCcceee
Confidence 21 11 34456688899987665433321 3445999999999999654 348999
Q ss_pred EeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 162 IDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 162 ~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
+.++++..+.++...+... ..|.+++..... ..+|+++|.+.++|..|+.+|...+
T Consensus 305 k~~ik~~~lgle~n~~~s~----~rF~i~~r~~~~--~~~~vlqa~s~~~k~~W~~~i~~~l 360 (448)
T KOG0689|consen 305 KQHIKVNDLGLEENNDNSA----SRFEIWFRGRKK--REAYVLQAGSKEIKYAWTRAISSLL 360 (448)
T ss_pred ecchhhhheeeeccCCCCC----cchhhhhhcccc--cceeEEeeCCHHHHHHHHHHHHHHH
Confidence 9999999999998654433 344444433321 1679999999999999999888776
No 28
>KOG4240|consensus
Probab=99.61 E-value=1.7e-17 Score=185.92 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=134.4
Q ss_pred CCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy5772 19 LSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVK 98 (654)
Q Consensus 19 l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~l~~l~~~i~~~~~~~~ 98 (654)
+.+.+||++||||||||.|||+++++.. .+....+++|++.|-.|.+.+|+.|+.....+.-..
T Consensus 757 l~~~S~l~kpvqritkYqlllkell~~c---~e~~~~lkd~l~~ml~v~k~~nd~mh~~~~~~~d~n------------- 820 (1025)
T KOG4240|consen 757 LSISSYLIKPVQRITKYQLLLKELLKCC---CEGTGDLKDALEVMLSVPKKVNDSMHLIALEGYDGN------------- 820 (1025)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHhh---hhchHHHHHHHHHHHhhhhhcccccCHHHHhhhhhh-------------
Confidence 4899999999999999999999999944 456678999999999999999999998877763333
Q ss_pred cCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCC----CceEEEeeccccceEEEE
Q psy5772 99 CLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSN----GSYSVIDYCTRAMMQMAA 174 (654)
Q Consensus 99 ~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~----~~~~~~~~~~~~~l~v~~ 174 (654)
+...+.+|++|.|.+|.++.-.. ..+++|+|||+-.+||||+... -+|..+++.+++.++|++
T Consensus 821 ----l~~lg~~~~q~~f~vw~~k~l~r---------k~~erhlfl~ei~ivf~K~~~~s~~~~~~~~~~~l~~~e~gite 887 (1025)
T KOG4240|consen 821 ----LDELGKLIMQDSFSVWKPKALAR---------KGMERHLFLFEISIVFCKRIEESSERIKYVSKKKLPMSEVGITE 887 (1025)
T ss_pred ----HHHHHHHHhhccceeecHHHHhh---------hhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccCCHHhhcchh
Confidence 33445699999999995433221 2367899999999999997532 256666678999999998
Q ss_pred ccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccccCC
Q psy5772 175 IEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKILNS 226 (654)
Q Consensus 175 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~~~ 226 (654)
...+++. -|. .|..-....|+++|++.+.|..|+.+|++.+.++
T Consensus 888 ~v~Gd~~----kf~----~~~g~~~~~~~~~a~~~~~K~~W~~~ir~~~~~~ 931 (1025)
T KOG4240|consen 888 HVEGDPC----KFE----LWVGRTESVIDLKASNHETKQKWVKEIREVLQER 931 (1025)
T ss_pred hcccCce----EEE----EeccCCCcceeeecCCcchhhhhccchHHHHHHH
Confidence 7665543 344 4443334569999999999999999999998554
No 29
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.55 E-value=1.8e-14 Score=122.16 Aligned_cols=95 Identities=20% Similarity=0.215 Sum_probs=77.7
Q ss_pred eEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCC--CceEEEeeccccceEEEEccCCCCCCCCc
Q psy5772 108 WLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSN--GSYSVIDYCTRAMMQMAAIEDSVPPTNKY 185 (654)
Q Consensus 108 ~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 185 (654)
+||++|.|..+.. |. .+++++|||||+||+|.+... ++|.+...+++..+.|+++++. +...|
T Consensus 1 ~~ikEG~L~K~~~--------k~-----~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~--~~~~~ 65 (99)
T cd01220 1 EFIRQGCLLKLSK--------KG-----LQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHE--WGVPH 65 (99)
T ss_pred CeeeEEEEEEEeC--------CC-----CceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCC--cCCce
Confidence 3899999987742 11 156789999999999998643 5899999999999999998763 22357
Q ss_pred eEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 186 LILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 186 ~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
.|.+. +...+|+|+|+|++||..||.+|+++|
T Consensus 66 ~F~I~------~~~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 66 CFTIF------GGQCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred eEEEE------cCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 88876 566789999999999999999999887
No 30
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.55 E-value=1.6e-14 Score=124.87 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=80.9
Q ss_pred CceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecC------CCceEEEeeccccceEEEEccCCC
Q psy5772 106 SRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKS------NGSYSVIDYCTRAMMQMAAIEDSV 179 (654)
Q Consensus 106 ~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~------~~~~~~~~~~~~~~l~v~~~~~~~ 179 (654)
.++||+||.+.++.+..+.. .+.++||+|||+++|||||++. ...|.++.+++++.+.+++..+++
T Consensus 2 qG~Ll~Q~~f~v~~~~~~~~--------~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd 73 (114)
T cd01232 2 QGKLLLQDTFQVWDPKAGLI--------QKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGD 73 (114)
T ss_pred CCceEEEccEEEEeCCcccc--------CCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCC
Confidence 46799999999987654211 1226899999999999999752 237999999999999999977654
Q ss_pred CCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 180 PPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 180 ~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
+ ..|.+.+.... ....+|+++|+|+++|+.|+.+|++.+
T Consensus 74 ~----~kF~i~~~~~~-~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 74 P----CRFALWSGDPP-ISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred C----ceEEEEeCCCC-CCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 3 45666544332 133789999999999999999998766
No 31
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.54 E-value=3.7e-14 Score=120.66 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=79.2
Q ss_pred CceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecC-CCceEEEeeccccceEEEEccCCCCCCCC
Q psy5772 106 SRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKS-NGSYSVIDYCTRAMMQMAAIEDSVPPTNK 184 (654)
Q Consensus 106 ~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~-~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 184 (654)
+|.||++|.|..++. |.. +++++|||||+||+++... +.+|.+...+++..+.|+++.|... .+
T Consensus 1 gR~li~eG~L~K~~r--------k~~-----~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~--~~ 65 (104)
T cd01218 1 GRVLVGEGVLTKMCR--------KKP-----KQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGI--ER 65 (104)
T ss_pred CCEEEecCcEEEeec--------CCC-----ceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCccc--cc
Confidence 488999999987752 111 5677999999999998743 3479999999999999999887543 35
Q ss_pred ceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 185 YLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 185 ~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
|.|.+. +...+|+++|+|+++|..||.+|++++
T Consensus 66 n~f~I~------~~~kSf~v~A~s~~eK~eWl~~i~~ai 98 (104)
T cd01218 66 NGWIIK------TPTKSFAVYAATETEKREWMLHINKCV 98 (104)
T ss_pred ceEEEe------cCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 788876 455679999999999999999998887
No 32
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.52 E-value=5.8e-15 Score=159.95 Aligned_cols=208 Identities=18% Similarity=0.229 Sum_probs=160.5
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYE 82 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~ 82 (654)
||.|...++.-...+++.++.||-+|+-|++||+||+++++|+|.+|.||++++-+++++++++.+.+|-....+++...
T Consensus 601 fa~Fd~~v~rl~~s~k~~ld~yLtk~~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~ 680 (1175)
T COG5422 601 FARFDHEVERLDESRKLELDGYLTKPTTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGD 680 (1175)
T ss_pred hhhhhHHHHhcchhhhhcccceecCCcccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchh
Confidence 67777777766677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCcccCCceEEeecceEEEecCccchhhhhcccccccc-eEEEEecCCeEEEEEecCCC----
Q psy5772 83 MLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYA-KLNLFLFTDLLVITKKKSNG---- 157 (654)
Q Consensus 83 l~~l~~~i~~~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~-~~~~fLF~d~Ll~~k~~~~~---- 157 (654)
++++.++|.|.+ +.-...+.++.|++++.|.+.+... .+...... ++++||++.+|++||.|.-.
T Consensus 681 ~~~l~qql~fk~-e~~~lgl~D~~rkii~kgvlk~ka~---------~~td~s~~~di~f~llDn~ll~~Kak~vnkw~~ 750 (1175)
T COG5422 681 LFHLNQQLLFKP-EYVNLGLNDEYRKIIFKGVLKRKAK---------SKTDGSLRGDIQFFLLDNMLLFCKAKAVNKWRQ 750 (1175)
T ss_pred hhhhhhhhccCc-hhhcccccchhHHHHHhhhhhhhhh---------ccCCcccccceeeeehhhHHHHhcccchhhhhh
Confidence 999999999975 5667888999999999999854321 11112223 78999999999999976432
Q ss_pred ceEEEeeccccceEEEEccCCCC--------C------------CCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhc
Q psy5772 158 SYSVIDYCTRAMMQMAAIEDSVP--------P------------TNKYLILLTILENHEQKTVEIVLSCDTESESSLNVS 217 (654)
Q Consensus 158 ~~~~~~~~~~~~l~v~~~~~~~~--------~------------~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~ 217 (654)
.-.+...+++..+.+--.+|... + ..++.+. |.-...|+....+++|.+..-++.|++
T Consensus 751 hkvfqrpipl~ll~i~~~eDsp~~~~y~~~~~s~~~l~pa~nt~~P~~a~~--F~~~~~~~ry~itlYa~~~~g~d~~lE 828 (1175)
T COG5422 751 HKVFQRPIPLELLFISPDEDSPDRAEYLKPAPSADVLDPAYNTKPPKNAYG--FELYGNGQRYQITLYAETHAGRDTWLE 828 (1175)
T ss_pred ceeecCCCcchhhccccccCCchhhhccCCCCcccccChhhhcCCccccce--eeeecccccccccccccccchHHHHHH
Confidence 22223344555555444444321 1 1123333 333344555778999999999999999
Q ss_pred ccCcc
Q psy5772 218 NKSDK 222 (654)
Q Consensus 218 ~~~~~ 222 (654)
+|.+.
T Consensus 829 ~i~nq 833 (1175)
T COG5422 829 HIKNQ 833 (1175)
T ss_pred hhhhh
Confidence 88654
No 33
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.49 E-value=9.5e-14 Score=119.37 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=78.3
Q ss_pred ceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCC---------CceEEEeeccccceEEEEccC
Q psy5772 107 RWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSN---------GSYSVIDYCTRAMMQMAAIED 177 (654)
Q Consensus 107 r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~---------~~~~~~~~~~~~~l~v~~~~~ 177 (654)
+.||++|.|.++..+.+. -++||+|||||+||+||++.. ..|.++..+++..+.|.+.++
T Consensus 2 ~elI~EG~L~ki~~~~~~-----------~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d 70 (112)
T cd01261 2 NEFIMEGTLTRVGPSKKA-----------KHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD 70 (112)
T ss_pred ccccccCcEEEEecccCC-----------cceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC
Confidence 459999999988643221 167889999999999998543 279999999999999999887
Q ss_pred CCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 178 SVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 178 ~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
++. .+|.|.+.... ...|+|+|.|+++|..||.++..++
T Consensus 71 ~~~--~knaF~I~~~~-----~~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 71 SSE--YKNAFEIILKD-----GNSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred Ccc--cCceEEEEcCC-----CCEEEEEECCHHHHHHHHHHHHHHh
Confidence 653 36888886321 2369999999999999999876554
No 34
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=5.3e-14 Score=124.31 Aligned_cols=118 Identities=13% Similarity=0.071 Sum_probs=84.6
Q ss_pred ceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecC--CC-----ceEEEeeccccceEEEEccCCC
Q psy5772 107 RWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKS--NG-----SYSVIDYCTRAMMQMAAIEDSV 179 (654)
Q Consensus 107 r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~--~~-----~~~~~~~~~~~~l~v~~~~~~~ 179 (654)
++||+||.++++...++.. +.|..-+...++||+|||+.++||||++. ++ .|.++.+++++.+.+++...++
T Consensus 1 G~ll~Qd~f~Vw~~~~~~~-~~k~~~r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd 79 (133)
T cd01227 1 GKLLMQGSFSVWTDHKKGH-TKKELARFKPMQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGD 79 (133)
T ss_pred CCceEecceEEEEcccccc-chhhhhccCCceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCC
Confidence 3589999999886543321 11111111236899999999999999873 22 7999999999999998855443
Q ss_pred CCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccccCCCCcCCCC
Q psy5772 180 PPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKILNSPSWYSDC 233 (654)
Q Consensus 180 ~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~~~~~~~~~~ 233 (654)
...|.+.+ .++...|+|+|+|++.|+.|+.+|++.+.+|...+.++
T Consensus 80 ----~~kFeiw~----~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~~~lk~~ 125 (133)
T cd01227 80 ----TKKFEIWY----NAREEVYILQAPTPEIKAAWVNEIRKVLTSQLQACKEA 125 (133)
T ss_pred ----ccEEEEEe----CCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24566544 44567899999999999999999999986554444443
No 35
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.47 E-value=2.8e-14 Score=136.81 Aligned_cols=71 Identities=30% Similarity=0.592 Sum_probs=68.8
Q ss_pred chhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy5772 2 TLGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNE 72 (654)
Q Consensus 2 ~~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~ 72 (654)
-|+.|+++++..+.|++++|.+||++||||++||+|||++|+|+||++|+|+..|+.|++.|+.++..||+
T Consensus 110 ~f~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 110 RFQKFLKEIESSPQCRRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHEDREDLKKALKAIKELANQVNE 180 (180)
T ss_pred hHHHHHHHHhCChhhccCCHHHHHhHHHHHhccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999995
No 36
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.45 E-value=2.8e-13 Score=113.65 Aligned_cols=95 Identities=15% Similarity=0.173 Sum_probs=76.3
Q ss_pred ceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCce
Q psy5772 107 RWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYL 186 (654)
Q Consensus 107 r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 186 (654)
+.|+++|.+.+... + ++||+|||+++||+||+++ ++|.++.++.++.+.|.+..+++ .+.
T Consensus 2 geLlleg~l~~~~~-------~--------~eR~vFLFe~~ll~~K~~~-~~y~~K~~i~~~~l~i~e~~~~d----~~~ 61 (97)
T cd01222 2 GDLLLEGRFREHGG-------G--------KPRLLFLFQTMLLIAKPRG-DKYQFKAYIPCKNLMLVEHLPGE----PLC 61 (97)
T ss_pred CceeeeceEEeecC-------C--------CceEEEEecccEEEEEecC-CeeEEEEEEEecceEEecCCCCC----CcE
Confidence 46999999975532 1 5788999999999999875 48999999999999999865433 478
Q ss_pred EEEEEeecCCCccEEEEEEcCChhhhhhhhcccCcccc
Q psy5772 187 ILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKIL 224 (654)
Q Consensus 187 f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~ 224 (654)
|.+.... .....|+|+|+|+++|+.||.+|+.+++
T Consensus 62 F~v~~~~---~p~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 62 FRVIPFD---DPKGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred EEEEecC---CCceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 8875433 2235699999999999999999988764
No 37
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.45 E-value=2.7e-13 Score=116.29 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=75.9
Q ss_pred EEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEec---CCCceEEEeeccccceEEEEccCCCCCCCCc
Q psy5772 109 LVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKK---SNGSYSVIDYCTRAMMQMAAIEDSVPPTNKY 185 (654)
Q Consensus 109 li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~---~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 185 (654)
||++|.|..++...+ ..++||+|||||+||+|+++ .+..|.++..+++..+.|.+..+ ....|
T Consensus 2 ~ikeG~L~K~~~~~~-----------~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~---~~~~~ 67 (101)
T cd01219 2 LLKEGSVLKISSTTE-----------KTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN---LERPH 67 (101)
T ss_pred cccceEEEEEecCCC-----------CceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC---CCcCc
Confidence 789999987753211 13678999999999999975 35589999999999999987532 23358
Q ss_pred eEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 186 LILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 186 ~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
.|.+. |+..+|+++|+|+++|..||.+|+.++
T Consensus 68 ~F~I~------~~~rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 68 SFLVS------GKQRCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred eEEEe------cCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 88874 445789999999999999999998877
No 38
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.42 E-value=1.4e-12 Score=110.10 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=77.3
Q ss_pred eEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEe--cCCCceEEEeeccccceEEEEccCCCCCC---
Q psy5772 108 WLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKK--KSNGSYSVIDYCTRAMMQMAAIEDSVPPT--- 182 (654)
Q Consensus 108 ~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~--~~~~~~~~~~~~~~~~l~v~~~~~~~~~~--- 182 (654)
+||++|++.++..+.+. -+++++|||+..||+||+ ..++.|.++..+.+..+.|.+++|+....
T Consensus 1 eli~~Gel~~~s~~~g~-----------~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~ 69 (109)
T cd01224 1 ELFLQGEATRQKQNKGW-----------NSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGH 69 (109)
T ss_pred CceEeeeEEEEecccCC-----------cccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCc
Confidence 38999999888643221 157889999999999996 34678999999999999999999886442
Q ss_pred -CCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccC
Q psy5772 183 -NKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 183 -~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~ 220 (654)
.+|.|.+. +..+...|+|+|.|+++|..||+++.
T Consensus 70 ~~knafkl~----~~~~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 70 TIKNSLKIY----SESTDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred eeEEEEEEE----EcCCCeEEEEEECCHHHHHHHHHHHH
Confidence 24555554 44556779999999999999999653
No 39
>KOG3524|consensus
Probab=99.40 E-value=1.1e-13 Score=147.33 Aligned_cols=196 Identities=20% Similarity=0.293 Sum_probs=146.8
Q ss_pred chhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 2 TLGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYY 81 (654)
Q Consensus 2 ~~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~ 81 (654)
+|-.|++.-++.|+|+|++|.+++++||||+|-..|||++|.| + .+.+|...+++|+.+++++.++||+-++.+|+..
T Consensus 492 rfhaflKinq~kpecgRq~l~dlmirpvqrlpsvilllndl~k-~-s~N~dk~~leea~kaikev~khInedKrkte~~~ 569 (850)
T KOG3524|consen 492 RFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAK-K-SDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFI 569 (850)
T ss_pred HHHHHHHccccchhhhhhcccchhccchhhhhHHHHHHHHHHh-h-ccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHH
Confidence 5778999999999999999999999999999999999999999 3 6788999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCcccCCceEEeecceE-EEecCccchhhhhcccccccceEEEEecCCeEEEEEec---CC-
Q psy5772 82 EMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMN-FVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKK---SN- 156 (654)
Q Consensus 82 ~l~~l~~~i~~~~~~~~~~~l~~~~r~li~~G~l~-~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~---~~- 156 (654)
.++++-..++ +....|++.+|-+|..-... .+... . ..++-.+-||||+|++++||++ .+
T Consensus 570 ~ifdkf~die-----gcpa~lvssnrsfi~~lev~i~l~~~-~---------~~rg~~~~l~lf~dvlei~k~r~~~~~t 634 (850)
T KOG3524|consen 570 SIFDKFTDIE-----GCPAILVSSNRSFIRELEVSIALTSP-G---------LQRGAKMKLFLFHDVLEITKIRLARHAS 634 (850)
T ss_pred HHHHHHHhhh-----cCchhheeccchHHHHhhhhhhhcCc-c---------cccccceeeehhhhHHHHHHHhHhhhcc
Confidence 8888777664 34555678888888766553 22111 0 1122456699999999999965 11
Q ss_pred ---------CceEEEeeccccce----EEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChh--hhhhhhccc
Q psy5772 157 ---------GSYSVIDYCTRAMM----QMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTES--ESSLNVSNK 219 (654)
Q Consensus 157 ---------~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~--~k~~W~~~~ 219 (654)
..|+..+.++++.| ++.+++ +..+.|.+......+.......|+..+.| .+.+|+..+
T Consensus 635 F~S~hs~tr~p~KhI~li~LntIr~V~dIrE~~-----~cpnAF~lllr~~~EQ~~v~~~Fq~tdDE~p~e~~y~K~L 707 (850)
T KOG3524|consen 635 FASLHSRQRRPYKHIDLIQLNTIRSVFDIREIA-----KCPNAFVLLLRHRDEQGGIDTVFESNDDEDPSDMRYFKNL 707 (850)
T ss_pred ccCCCCCCCCcccceeeccHHHHHHHhhhhhhc-----cCccceEEEEeCchhhcCeeEEEEecccccchhhHHHHHH
Confidence 13555555554433 333333 23578988887777666656667776666 344599844
No 40
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.37 E-value=3.2e-13 Score=129.60 Aligned_cols=67 Identities=28% Similarity=0.512 Sum_probs=63.2
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECN 71 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN 71 (654)
|..++++++. .+++++|.+||++|||||+||+|||++|+|+||++|+|+..|+.|++.+++++.+||
T Consensus 115 f~~~~~~~~~--~~~~~~l~~~L~~PvQRl~rY~lLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 115 FQEFLEKAES--ECGRLKLESLLLKPVQRLTKYPLLLKELLKHTPDGHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred HHHHHHHHHH--hcccCCHHHHhhhhHHHhchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5667777777 799999999999999999999999999999999999999999999999999999998
No 41
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.32 E-value=6.3e-12 Score=104.65 Aligned_cols=97 Identities=15% Similarity=0.283 Sum_probs=79.7
Q ss_pred EEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEE
Q psy5772 109 LVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLIL 188 (654)
Q Consensus 109 li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~ 188 (654)
+|++|.+...+.+... .. +.+++|||||+||++.....++|.+....++..+.|.++.|..+. +|.|.
T Consensus 2 ~i~~G~l~e~~~~~~k------p~----~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~~~--kNafk 69 (100)
T cd01226 2 VILYGELEEFDVETKK------PV----QRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRENA--KKVLK 69 (100)
T ss_pred EEEcCcEEEechhhCC------cc----ceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEecCCCcCc--CceEE
Confidence 7899999988653321 11 457799999999999887777999999999999999999987754 78888
Q ss_pred EEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 189 LTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 189 ~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
+.... .+++++|.|+++|.+||++|+++.
T Consensus 70 i~t~~------~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 70 LLIFP------ESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EEeCC------ccEEEEeCCHHHHHHHHHHHHHHh
Confidence 87433 449999999999999999998765
No 42
>KOG3531|consensus
Probab=99.30 E-value=2.4e-12 Score=139.65 Aligned_cols=192 Identities=19% Similarity=0.302 Sum_probs=157.0
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYE 82 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~ 82 (654)
|..+.+..|-..+|- |++..||++|++|+.-|.++|+.|.+|.+++|.|+.+...+.+.+-...+.|...+-++| +
T Consensus 654 ~~~v~kefelqkvcy-LP~~~fllkpL~rllhyq~~LeRLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e---~ 729 (1036)
T KOG3531|consen 654 LEAVYKEFELQKVCY-LPLNTFLLKPLSRLLHYQLALERLCGHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTE---K 729 (1036)
T ss_pred HHhhhccHHhhhccc-cccchhhhccccHHHHHHHHHHHhhcccCCCccchHHHhhcccccccccccccccchhHH---H
Confidence 567778888888887 999999999999999999999999999999999999999999999999998888877777 7
Q ss_pred HHHHHHhhcccccccccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecC--CCceE
Q psy5772 83 MLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKS--NGSYS 160 (654)
Q Consensus 83 l~~l~~~i~~~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~--~~~~~ 160 (654)
|-+|++.|. ...+|+.++|++|++|.+...+. |.- +.+.+|||+|+||++-+.. ...|.
T Consensus 730 l~Elkrdl~------s~e~LV~p~rE~ir~g~llK~sk--------kgL-----qqrmfFLfsdillytsk~~~~~~~fr 790 (1036)
T KOG3531|consen 730 LRELKRDLA------SIENLVHPGREFIRSGCLLKLSK--------KGL-----QQRMFFLFSDILLYTSKGPDVQKCFR 790 (1036)
T ss_pred HHHHHHhhh------ccccccCcchhhhhcCCchhhcc--------ccc-----hhhhhhhhhhhheeccCCCChhheeE
Confidence 888888773 45678999999999999976532 111 3344799999999998653 34788
Q ss_pred EEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccccCC
Q psy5772 161 VIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKILNS 226 (654)
Q Consensus 161 ~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~~~ 226 (654)
+...+|+. +.+++.++.- ...|+|.+. |.....+..|++.++++.|+-+++.+|+..
T Consensus 791 i~g~lP~~-l~~en~en~~--s~p~~~ti~------~~qk~i~vsast~~~sk~~~~~r~~~i~~~ 847 (1036)
T KOG3531|consen 791 INGDLPLT-LTMENSENEW--SVPHCFTIS------GAQKQIYVSASTRRESKKWEFDRRKAIDLA 847 (1036)
T ss_pred eccCCceE-eeeecccccc--cCCceEEEe------ccceEEEEeccchhhhhhhhhccchhhhhc
Confidence 88888988 8888866432 234777754 556668899999999999999998888533
No 43
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.24 E-value=4e-12 Score=121.63 Aligned_cols=70 Identities=30% Similarity=0.617 Sum_probs=68.2
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNE 72 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~ 72 (654)
|..|+++++.+|.++++++.+||++|+|||+||++||++|+|+||++|+|+..|++|++.+++++..||+
T Consensus 111 ~~~~l~~~~~~~~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~~~~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 111 FKKFLEEIENSPESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTPPDHPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp HHHHHHHHHTSHHCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSSTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhCc
Confidence 7889999999999999999999999999999999999999999999999999999999999999999996
No 44
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.21 E-value=1.4e-11 Score=99.88 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=67.2
Q ss_pred ceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEec--CC---CceEEEeeccccceEEEEccCCCCC
Q psy5772 107 RWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKK--SN---GSYSVIDYCTRAMMQMAAIEDSVPP 181 (654)
Q Consensus 107 r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~--~~---~~~~~~~~~~~~~l~v~~~~~~~~~ 181 (654)
|+||.+|.++.+.... + +++|+|||||+||+++.+ ++ .+|.++.++|+.++.+.+++
T Consensus 1 r~Lv~eg~lvel~~~~--------r-----K~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~----- 62 (96)
T cd01228 1 RQLVKDSFLVELVEGS--------R-----KLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP----- 62 (96)
T ss_pred CcccccceeeeehhCC--------C-----cceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-----
Confidence 6799999998875221 1 678899999999999954 22 47999999999999998763
Q ss_pred CCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCc
Q psy5772 182 TNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSD 221 (654)
Q Consensus 182 ~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~ 221 (654)
|.+. .....+|++.|+|..||.+||.+|..
T Consensus 63 -----~~~~-----~~~~KSf~~~asS~~Er~eW~~hI~~ 92 (96)
T cd01228 63 -----FRIH-----NKNGKSYTFLLSSDYERSEWRESIQK 92 (96)
T ss_pred -----hhcc-----ccCCceEEEEecCHHHHHHHHHHHHH
Confidence 2211 12235699999999999999999864
No 45
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.15 E-value=1.1e-10 Score=99.50 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=74.7
Q ss_pred ceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCC----ceEEEeeccccceEEEEccCCCCC-
Q psy5772 107 RWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNG----SYSVIDYCTRAMMQMAAIEDSVPP- 181 (654)
Q Consensus 107 r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~----~~~~~~~~~~~~l~v~~~~~~~~~- 181 (654)
++++..|++...+.... +. +++|+|||+.+||+||++++. .|.+++...+..+.|++....+..
T Consensus 2 GR~~~DGelk~k~~~~~---k~--------k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~ 70 (116)
T cd01223 2 GRPLLDGEVRIKASEDQ---KT--------KLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEG 70 (116)
T ss_pred CccccCCceEEeEeccC---CC--------ceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCccc
Confidence 45788899876654322 11 578899999999999987543 499999999999999987643332
Q ss_pred -C--CCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCcccc
Q psy5772 182 -T--NKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKIL 224 (654)
Q Consensus 182 -~--~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~ 224 (654)
. -.+.|.+...... ..|+|+|.|+++|..||.++.-++.
T Consensus 71 ~~~~~~~~f~L~~~~~~----~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 71 RDTRWKYGFYLAHKQGK----TGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred CCcceEEEEEEEecCCC----ccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 1 2345555543332 3399999999999999998776653
No 46
>KOG3522|consensus
Probab=99.11 E-value=1.2e-10 Score=127.36 Aligned_cols=134 Identities=20% Similarity=0.247 Sum_probs=104.7
Q ss_pred ccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCcc
Q psy5772 24 FLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVI 103 (654)
Q Consensus 24 ~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~l~ 103 (654)
++++| |+|||.|||+ |+||||.+|||+..|+.|+..+.+++..+|+.+|..+...++..+-+.|+-. -....+|.
T Consensus 121 l~~kP--r~P~y~lll~-mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r--~el~e~L~ 195 (925)
T KOG3522|consen 121 LMIKP--RFPRYELLLQ-MLKHTPLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVR--SELMEDLG 195 (925)
T ss_pred HHhcc--CCchHHHHHH-HhhcCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--hhhhhhcc
Confidence 89999 9999999999 9999999999999999999999999999999999999888888777766532 12356677
Q ss_pred cCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEec--C--------------CCceEEEeeccc
Q psy5772 104 SSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKK--S--------------NGSYSVIDYCTR 167 (654)
Q Consensus 104 ~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~--~--------------~~~~~~~~~~~~ 167 (654)
++.|+|+.+..++...-.+ ++ +++-.|+|+|.++.+.-+ . .++|+++...++
T Consensus 196 ag~r~lLl~dl~se~vy~~----rk--------~d~~~~~~rd~i~~~~Lk~~sg~~r~~~t~as~vdt~ky~~lw~~~L 263 (925)
T KOG3522|consen 196 AGRRQLLLQDLVSETVYTG----RK--------KDRKAFLFRDLIVNTDLKRASGSSRKPSTAASVVDTAKYKLLWKDPL 263 (925)
T ss_pred cchHHHHHHHHhhhhhhcc----cc--------chhhheeeeeeeeeeeeeeeeceecCCccccccccccceeeeecccc
Confidence 8889998887775442111 12 344589999999988632 1 127888888877
Q ss_pred cceEEEE
Q psy5772 168 AMMQMAA 174 (654)
Q Consensus 168 ~~l~v~~ 174 (654)
....+..
T Consensus 264 ~~~~vvk 270 (925)
T KOG3522|consen 264 VFADVVK 270 (925)
T ss_pred chhheee
Confidence 7666655
No 47
>KOG3519|consensus
Probab=98.73 E-value=1.5e-08 Score=116.79 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=100.2
Q ss_pred hhhHHHHhhcCCCCCCCCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 3 LGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYE 82 (654)
Q Consensus 3 ~~~~l~~~e~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~ 82 (654)
+..++..|-....-.+-+|.+||++|||||+||||||.++++.|+.+|.|+..+..|+..|+.++..||+.++..+....
T Consensus 452 ~~~~l~~~~~~~~~~~~~L~s~l~~pvqri~kYPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~ 531 (756)
T KOG3519|consen 452 VKEFLEACNLLQQHSNSSLSSFLLKPVQRICKYPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSS 531 (756)
T ss_pred hhhhhhhhhhhhccccCCchhhhccHHHHhccCchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhH
Confidence 34555556555555568999999999999999999999999999999999999999999999999999999999999665
Q ss_pred HHHHHHhh-cc--cccccccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCC
Q psy5772 83 MLLLSRLI-KF--SLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSN 156 (654)
Q Consensus 83 l~~l~~~i-~~--~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~ 156 (654)
..+--..- .. .-.......+...+..++..|...+... .+.. ...++.|||+..+++|++...
T Consensus 532 ~~~~~~~~q~~~~~~~~~~~~~~~~~Ss~l~~~~~~~~~~q-------~~~~----~~~~~~~l~~~~~~~c~~~~~ 597 (756)
T KOG3519|consen 532 FLDKIAAEQSGSNSLELSEGELLLDNSSELLLSGPSLKIRQ-------FQSD----SQQRQFFLFDNQLVYCKRSST 597 (756)
T ss_pred HHHHhhhhhccchhhhccCCCcccccccceeeccchhhhhh-------hhcc----hhhhhheecccceeEeecccc
Confidence 44322220 00 0001122222335556666666643311 0011 123458999999999997543
No 48
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=98.71 E-value=1.8e-08 Score=90.61 Aligned_cols=100 Identities=16% Similarity=0.289 Sum_probs=55.9
Q ss_pred EEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCC---ceEEEe-eccccceEEEEccCCCCC---
Q psy5772 109 LVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNG---SYSVID-YCTRAMMQMAAIEDSVPP--- 181 (654)
Q Consensus 109 li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~---~~~~~~-~~~~~~l~v~~~~~~~~~--- 181 (654)
||++|.|...+.. ...+.++|+|||+++||+||.|..+ .|.|.. -+|+..|.|+...+....
T Consensus 1 Li~~G~L~Rk~~~-----------~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~ 69 (135)
T PF15405_consen 1 LIYKGDLKRKGDN-----------SFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPPPQRSI 69 (135)
T ss_dssp ---------------------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTTS----
T ss_pred Ccccccccccccc-----------ccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCCcccCc
Confidence 5788888544221 1112489999999999999987544 677755 458999999976554321
Q ss_pred -------------------------CCCceEEEEEeecCCCcc-EEEEEEcCChhhhhhhhcccCc
Q psy5772 182 -------------------------TNKYLILLTILENHEQKT-VEIVLSCDTESESSLNVSNKSD 221 (654)
Q Consensus 182 -------------------------~~~~~f~~~~~~~~~~~~-~~~~l~a~s~~~k~~W~~~~~~ 221 (654)
..+..|.++|..- |+. ..|+|+|+|+..|+.|++.|..
T Consensus 70 ~~r~s~s~~~~~~~~~~~~~~~~~~~~~~~yp~~~~hl--G~~~~~~TLyA~s~~~R~~W~e~I~~ 133 (135)
T PF15405_consen 70 AKRPSSSLISSSSSNSNSPSNPNSSDSKSLYPFTFRHL--GRKGYSYTLYASSAQARQKWLEKIEE 133 (135)
T ss_dssp -----S-------SHHHH--------TSSEEEEEE-----GGG-EEEEEE-SSHHHHHHHHHHHHH
T ss_pred ccccccCccCCccCCCCccceeeeccCCCccCEEEEEc--CCCceEEEEEeCCHHHHHHHHHHHHh
Confidence 1245666655444 544 4499999999999999998764
No 49
>KOG4269|consensus
Probab=98.59 E-value=2.7e-08 Score=109.36 Aligned_cols=231 Identities=15% Similarity=0.186 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-----cCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcCcc
Q psy5772 387 RKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD-----DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSIL 461 (654)
Q Consensus 387 ~krq~~i~ELi~TE~~Yv~~L~~l~~~f~~~~~l~-----~~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~~ 461 (654)
.-|+-+.-.+..+|..|..++..+.-- +. |+. ..+.++......||-.+.+|+++|..|...|....+.|..
T Consensus 331 ~~rkl~dS~f~~~d~~~~~s~d~l~l~-~~--p~~al~~tsqp~~~~~~~~t~~~k~s~i~~~hk~~~~~l~pk~q~~~s 407 (1112)
T KOG4269|consen 331 EMRKLVDSGFLASDEHYSQSLDALLLP-MK--PLKALATTSQPVLTKQQIETIFNKFSPIYEIHKEFYDNLHPKVQQWKS 407 (1112)
T ss_pred HHHHHHhcccccccchhhcccchhhcc-cc--cccccCCCCCCCccccccccccccCCCchhhhhhhccccCchhhhhhh
Confidence 566777778999999999999876532 22 443 4677888899999999999999999999999999999999
Q ss_pred cccHHHHHHHhcccchhhhHHHhhhc--HHHHHHHHHHHHhcChhHHHHHHHHhcCC------CCCCcCchhhhcccchh
Q psy5772 462 LTNICEIVYQHVTNKSFNIYIKYCSN--QFHIDRTLKSLRETNPKFIEALTELESDP------VCQSLSLHSFLMLPMQR 533 (654)
Q Consensus 462 ~~~i~~if~~~~~~~~~~~Y~~Y~~n--~~~~~~~l~~~~~~~~~f~~~l~~~~~~~------~~~~l~L~s~Li~PvQR 533 (654)
....|..|...+. ....|..|+.| |..++..-..+.+.++.|+..-.++.... ...-.+..-.|.+|+-|
T Consensus 408 qs~~~~~~~~L~S--~l~n~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~~~n~~s~~sst~~~~~~~l~rpi~~ 485 (1112)
T KOG4269|consen 408 QSNSGGLFQKLAS--QLGNYLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVVGVNKDSKDSSTWKDEEWLLYRPIDR 485 (1112)
T ss_pred hhccCccchhhhh--hcchhhhhhcchhhhhhcccccchhhcchhhhhhhhhheecccccccccCCccchhhhhccchhh
Confidence 9999999999998 99999999999 88888777888888888876655432211 12235677899999999
Q ss_pred hccHHHHHHHHHHhCCCCCcchH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q psy5772 534 VTRLPLLFDAILTRLRPNHSEYE----------TCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLP 603 (654)
Q Consensus 534 i~rY~lLL~~llk~t~~~~~d~~----------~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~ 603 (654)
.++.-+-|..++|++|-.|||+- .++.|++....++..+|+.....+ +....+.
T Consensus 486 ~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~~r----~~~f~ks------------ 549 (1112)
T KOG4269|consen 486 VTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEPRR----LLEFLKS------------ 549 (1112)
T ss_pred hhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhh----hhhhccc------------
Confidence 99999999999999999999998 899999999999999998765422 2221111
Q ss_pred cccCCceEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 604 VISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 604 l~~~~R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
...|++++.+.+..+. ++ .+. -+++|+|.+.|++|
T Consensus 550 --~~~rq~L~d~f~~~v~-~~--------~~~----~~~~~~~~~~ll~t 584 (1112)
T KOG4269|consen 550 --GELRQLLKDVFFVEVE-EA--------QRK----LRHVFLFTNSLLCT 584 (1112)
T ss_pred --chhHhhhhhheeeccc-cc--------ccc----chhhHHHhhccchh
Confidence 1458888888887774 22 222 57899999999876
No 50
>KOG2070|consensus
Probab=98.57 E-value=1.1e-06 Score=91.04 Aligned_cols=176 Identities=17% Similarity=0.223 Sum_probs=121.0
Q ss_pred CCcccccccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy5772 19 LSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVK 98 (654)
Q Consensus 19 l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~l~~l~~~i~~~~~~~~ 98 (654)
|-|..=|-+|+-|+-||+-||++|-.|.+..|||+.++++++...+++...|.+..++-|-.-.+ +...+ -.+
T Consensus 227 lvLttgLSkPfrrldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRkqKEleLqi--Lt~~i-----~~w 299 (661)
T KOG2070|consen 227 LVLTTGLSKPFRRLDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRKQKELELQI--LTEPI-----RNW 299 (661)
T ss_pred EEEecccchHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hcccc-----ccc
Confidence 34555588999999999999999999999999999999999999999999998765554433221 21111 112
Q ss_pred cCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCCc-eEEEeeccccceEEEEccC
Q psy5772 99 CLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGS-YSVIDYCTRAMMQMAAIED 177 (654)
Q Consensus 99 ~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~-~~~~~~~~~~~l~v~~~~~ 177 (654)
....++..+-+|+-|.+.+.-. +-. -+++|+.||.++|+|.--...-+ |.+-..+++..+.|+..++
T Consensus 300 ~g~d~s~lG~iiymg~v~Vqy~-------~ad-----~~dRy~~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEd 367 (661)
T KOG2070|consen 300 EGDDISTLGNIIYMGQVLVQYA-------GAD-----EKDRYLLLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLED 367 (661)
T ss_pred ccchhhhccceEeeeehhhhhc-------Ccc-----hhhheeeeccceeeeeEeccccchhhhccccccceeEEeehhh
Confidence 2223455555677676643211 100 14677999999999987443333 3444478899999999888
Q ss_pred CCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccC
Q psy5772 178 SVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 178 ~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~ 220 (654)
.+.. .+.|.+. . ..-...+..|..+.+-+.|+.+..
T Consensus 368 te~~--~nafeis----~-~ti~rIv~~c~~~~~l~~wve~ln 403 (661)
T KOG2070|consen 368 TENH--RNAFEIS----G-STIERIVVSCNNQQDLQEWVEHLN 403 (661)
T ss_pred hhcc--ccccccc----c-cchhheeeccCChHHHHHHHHHhh
Confidence 7654 3444432 1 112336788999999999999765
No 51
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.23 E-value=1.3e-06 Score=76.47 Aligned_cols=41 Identities=32% Similarity=0.643 Sum_probs=33.0
Q ss_pred ceEEEEeeeEEEeccccc-hhhcccccccccceEEEEecCCeeecc
Q psy5772 609 RWLVRSGSMNFVNVDSKM-TFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 609 R~Li~~G~l~~~~~~~~~-~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
|||+++|+|+.+...+.. .+++|.+++ ++|+|||||+||+|
T Consensus 1 RwLvK~GEL~~l~~~~~~~~~~~k~~~~----~vylfLFnDlLl~t 42 (125)
T cd01221 1 RWLVKRGELTQLEERGSSNILRKKLKAR----TIYLFLFNDLLLIT 42 (125)
T ss_pred CceEEEeeEEEEeccCCcchhcccccCC----cEEEEEecceEEEE
Confidence 899999999999633222 356676766 99999999999998
No 52
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.99 E-value=2.4e-05 Score=66.78 Aligned_cols=98 Identities=12% Similarity=0.052 Sum_probs=72.7
Q ss_pred EeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecC-CCceEEEeeccccceEEEEccCCC---CCCCCc
Q psy5772 110 VRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKS-NGSYSVIDYCTRAMMQMAAIEDSV---PPTNKY 185 (654)
Q Consensus 110 i~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~-~~~~~~~~~~~~~~l~v~~~~~~~---~~~~~~ 185 (654)
+++|.|..... ....++.+|++|+++.|++++... .........+++..+.|....... .....+
T Consensus 2 ~~~G~L~~~~~-----------~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~ 70 (104)
T PF00169_consen 2 IKEGWLLKKSS-----------SRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKN 70 (104)
T ss_dssp EEEEEEEEEES-----------SSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSS
T ss_pred EEEEEEEEECC-----------CCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCc
Confidence 67888876641 122357888999999999999765 234555667788888888877653 344568
Q ss_pred eEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 186 LILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 186 ~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
.|.+.+... ..|.|.|+|++++..|+.+|+.++
T Consensus 71 ~f~i~~~~~-----~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 71 CFEITTPNG-----KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEETTS-----EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCC-----cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 888875433 569999999999999999987654
No 53
>PF15411 PH_10: Pleckstrin homology domain
Probab=97.99 E-value=5.5e-05 Score=66.00 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=60.6
Q ss_pred CCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecC-----------------CCceEEEeeccc
Q psy5772 105 SSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKS-----------------NGSYSVIDYCTR 167 (654)
Q Consensus 105 ~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~-----------------~~~~~~~~~~~~ 167 (654)
..+.|+.+|.+.+... ...++.+||||+.+||+||... .+...++..+.+
T Consensus 3 ~fG~Lll~g~~~V~k~-------------~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i 69 (116)
T PF15411_consen 3 RFGELLLHGTLTVGKD-------------DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYI 69 (116)
T ss_pred cccceEEccEEEEEeC-------------CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEE
Confidence 3466999999976632 1136889999999999998432 124455555444
Q ss_pred cceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhccc
Q psy5772 168 AMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNK 219 (654)
Q Consensus 168 ~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~ 219 (654)
.. +.++.... ....+.+++..........|+|.+.+++....|-++|
T Consensus 70 ~~--i~~v~~~s---~~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 70 SN--ITEVSSSS---KPGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred Ee--eeeeeccC---CCCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 42 23332222 1223444444433334566999999999999998754
No 54
>KOG0931|consensus
Probab=97.91 E-value=1.1e-05 Score=83.28 Aligned_cols=177 Identities=21% Similarity=0.177 Sum_probs=109.2
Q ss_pred cccccccccccCcHHHHHHHHHhcCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy5772 23 SFLMLPMQRVTRLPLLFDAILTRLRP----NHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVK 98 (654)
Q Consensus 23 s~Li~PvQRi~rY~LLL~~llk~t~~----~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~l~~l~~~i~~~~~~~~ 98 (654)
|==+||=||+ -|.+.+|+.-. ..-+++.|.-.++.|++=--..|+ +....+..+.+.|.. .+
T Consensus 341 SPnVKperkM-----~leDFikNLRGvDnGeDIpRell~GIYeRIqk~ELktnd-----DHVsqVqkVer~IVG----kk 406 (627)
T KOG0931|consen 341 SPNVKPERKM-----KLEDFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTND-----DHVSQVQKVERAIVG----KK 406 (627)
T ss_pred CCCCCHHHhh-----hHHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCc-----chHHHHHHHHHHHhc----CC
Confidence 3345565543 46777777622 112344455555555442222222 223345556666752 34
Q ss_pred cCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEe----cCCCceEEEeeccccceEEEE
Q psy5772 99 CLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKK----KSNGSYSVIDYCTRAMMQMAA 174 (654)
Q Consensus 99 ~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~----~~~~~~~~~~~~~~~~l~v~~ 174 (654)
.+.|..+.|+||+.-.|..+...++. .|..- ..+-+|||||+||++|. +..-+|++..+..+-.+.|+.
T Consensus 407 ~~vLs~phRRLVC~crL~eV~Dpnk~---Qk~~a----hqReVFLFNDllVV~K~~~kkk~s~TYtf~qs~~Llgmhv~l 479 (627)
T KOG0931|consen 407 PPVLSLPHRRLVCYCRLFEVPDPNKP---QKLGA----HQREVFLFNDLLVVTKIFQKKKTSVTYTFRQSFLLLGMHVQL 479 (627)
T ss_pred CcccccCCceEEEEEeeeecCCCCch---hhccc----ccceeeeecchhhhhhhhccCcceeEeehhhhhhHHHHHHHH
Confidence 45667899999999999988766552 22222 34569999999999982 333489988888777777776
Q ss_pred ccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 175 IEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 175 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
++.+-.. +.+.++.......+...+.|.|.+.+++..++.+++..|
T Consensus 480 Fqn~yY~---fGitltsp~~g~e~k~~ihFnA~n~~dr~kFv~Dl~ESI 525 (627)
T KOG0931|consen 480 FQNGYYE---FGITLTSPVPGSEKKVLIHFNAPNFQDRCKFVADLRESI 525 (627)
T ss_pred Hhhcccc---CceEEeccCCCCceeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 6644322 333333333332344568899999999999999877666
No 55
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.88 E-value=4.8e-05 Score=64.06 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=67.5
Q ss_pred EeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCCc-eEEEeeccccceEEEEccCCCCCCCCceEE
Q psy5772 110 VRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGS-YSVIDYCTRAMMQMAAIEDSVPPTNKYLIL 188 (654)
Q Consensus 110 i~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~ 188 (654)
+++|.|...... ....+++++++|+++.|.+++...... ......+++..+.+....+.......+.|.
T Consensus 2 ~~~G~l~~~~~~----------~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~ 71 (102)
T smart00233 2 IKEGWLYKKSGG----------KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFE 71 (102)
T ss_pred ceeEEEEEeCCC----------ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEE
Confidence 567777654321 112357888999999999999765422 455556677777777655543223457777
Q ss_pred EEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 189 LTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 189 ~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
+..... ..|.|.|+|++++..|+..|+.++
T Consensus 72 l~~~~~-----~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 72 IKTADR-----RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEecCC-----ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 764322 569999999999999999887553
No 56
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.67 E-value=0.00028 Score=59.78 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=64.3
Q ss_pred ceEEEEecCCeEEEEEe--cCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCcc-EEEEEEcCChhhhh
Q psy5772 137 AKLNLFLFTDLLVITKK--KSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKT-VEIVLSCDTESESS 213 (654)
Q Consensus 137 ~~~~~fLF~d~Ll~~k~--~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~l~a~s~~~k~ 213 (654)
.++|++||...|++... +.. .|.++..+|++.+.|...++.+.. ++.|.+. |.- ...++.|.+.++..
T Consensus 29 ~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd~e~~--~~aFeI~------G~li~~i~v~C~~~~e~~ 99 (111)
T cd01225 29 RERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLEDTEAL--KNAFEIS------GPLIERIVVVCNNPQDAQ 99 (111)
T ss_pred ceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHhccCc--cceEEEe------ccCcCcEEEEeCCHHHHH
Confidence 57889999999999986 444 599999999999999998887744 6788875 333 44889999999999
Q ss_pred hhhcccCccc
Q psy5772 214 LNVSNKSDKI 223 (654)
Q Consensus 214 ~W~~~~~~~~ 223 (654)
+|+.++++.+
T Consensus 100 ~Wl~hL~~~~ 109 (111)
T cd01225 100 EWVELLNANN 109 (111)
T ss_pred HHHHHHHhhc
Confidence 9999887644
No 57
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.29 E-value=0.00061 Score=57.68 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=72.5
Q ss_pred cccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCC---------------ceEEEeecc
Q psy5772 102 VISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNG---------------SYSVIDYCT 166 (654)
Q Consensus 102 l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~---------------~~~~~~~~~ 166 (654)
|++.+|.||..-+...++.. .++| ...+.+|||+|.|-+||++..+ .|+-...++
T Consensus 1 LlSShRs~v~r~e~~eL~d~----l~gr------Ge~~tlFLfsD~lEi~kkR~kv~~~~KSP~~~~~~~~~~KHi~lmp 70 (129)
T cd01229 1 LLSSHRSLVQRVETISLGEH----LCDR------GEQVTLFLFNDCLEIARKRHKVIGTFKSPHGSTRPPASLKHIHLMP 70 (129)
T ss_pred Cccchhhhhheeeeeeeccc----ccCC------CCeEEEEEecchHHHhhhcccccCCcCCCCCCCCCCcccceEEEeE
Confidence 46778888888888777531 1111 2568899999999999976432 344445556
Q ss_pred ccceE-EEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCC-hhhhhhhhcccCc
Q psy5772 167 RAMMQ-MAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDT-ESESSLNVSNKSD 221 (654)
Q Consensus 167 ~~~l~-v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s-~~~k~~W~~~~~~ 221 (654)
++.+. |.++.|.+ +..+.|.+.++...++++.-|.|+-.+ +..|..|+.-+-+
T Consensus 71 Ls~IkrVvdI~DtE--~c~~aF~L~~R~p~d~~~~L~sF~l~~Ee~~K~~~Lk~Lcr 125 (129)
T cd01229 71 LSQIKKVLDIRDTE--DCHNAFALLVRPPTEQANVLLSFQMTSEELPKEVWLKMLCR 125 (129)
T ss_pred hHHeEEEEeeeccc--cccceeEEEEeCCccchheEEEEEecCCcchHHHHHHHHHH
Confidence 66553 45565554 346789998888887777777777544 4578889875443
No 58
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.18 E-value=0.00022 Score=58.44 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=26.7
Q ss_pred ceEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeeccC
Q psy5772 609 RWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVAG 654 (654)
Q Consensus 609 R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit~ 654 (654)
|+||++|.|+.+. ++.. + ++++|||||+||++.
T Consensus 1 r~Lv~eg~lvel~--------~~~r-K----~R~~FLFnDlLvc~~ 33 (96)
T cd01228 1 RQLVKDSFLVELV--------EGSR-K----LRHLFLFTDVLLCAK 33 (96)
T ss_pred Ccccccceeeeeh--------hCCC-c----ceEEEeeccEEEEEE
Confidence 7899999999985 2222 2 889999999999874
No 59
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.15 E-value=0.0013 Score=54.51 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=55.2
Q ss_pred cceEEEEecCCeEEEEEecCCC-ceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhh
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNG-SYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSL 214 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~-~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~ 214 (654)
+++++++|+++.|.+++..... .+.....+++....+....+.. ...+.|.+....+ ..|.|.|.|++++..
T Consensus 16 w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~--~~~~~f~i~~~~~-----~~~~~~~~s~~~~~~ 88 (96)
T cd00821 16 WKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDS--GRKNCFEIRTPDG-----RSYLLQAESEEEREE 88 (96)
T ss_pred ccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcC--CCCcEEEEecCCC-----cEEEEEeCCHHHHHH
Confidence 4778899999999999865432 2344445556666666544332 2346777764332 569999999999999
Q ss_pred hhcccCc
Q psy5772 215 NVSNKSD 221 (654)
Q Consensus 215 W~~~~~~ 221 (654)
|+..|+.
T Consensus 89 W~~~l~~ 95 (96)
T cd00821 89 WIEALQS 95 (96)
T ss_pred HHHHHhc
Confidence 9998864
No 60
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.06 E-value=0.002 Score=55.63 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=52.1
Q ss_pred ccceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEc-cCCCCC----CCCceEEEEEeecCCCccEEEEEEcCCh
Q psy5772 135 FYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAI-EDSVPP----TNKYLILLTILENHEQKTVEIVLSCDTE 209 (654)
Q Consensus 135 ~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~-~~~~~~----~~~~~f~~~~~~~~~~~~~~~~l~a~s~ 209 (654)
.++.|++.|=+..|.+-+......-..+..+++..+..... .+...+ ..++.|.+... ..+|.++|.|+
T Consensus 20 nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~------~r~~yl~A~s~ 93 (106)
T cd01238 20 NYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD------EGTLYVFAPTE 93 (106)
T ss_pred CceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeC------CCeEEEEcCCH
Confidence 46778888877788888865443234556666666544432 222111 23466666531 23577899999
Q ss_pred hhhhhhhcccCc
Q psy5772 210 SESSLNVSNKSD 221 (654)
Q Consensus 210 ~~k~~W~~~~~~ 221 (654)
++++.||++|++
T Consensus 94 ~er~~WI~ai~~ 105 (106)
T cd01238 94 ELRKRWIKALKQ 105 (106)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 61
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.03 E-value=0.0039 Score=51.97 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=55.3
Q ss_pred cceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhh
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLN 215 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W 215 (654)
++.++++|+++.|.+.+.+....... ...++..+.+....+.. ...+.|.+..... ....+.|+|.|.++...|
T Consensus 19 w~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~l~~~~v~~~~~~~--~~~~~F~i~~~~~---~~~~~~~~~~~~~~~~~W 92 (99)
T cd00900 19 WKRRWFFLFDDGLLLYKSDDKKEIKP-GSIPLSEISVEEDPDGS--DDPNCFAIVTKDR---GRRVFVFQADSEEEAQEW 92 (99)
T ss_pred ceeeEEEEECCEEEEEEcCCCCcCCC-CEEEccceEEEECCCCC--CCCceEEEECCCC---CcEEEEEEcCCHHHHHHH
Confidence 46788999999999999776543321 33455666665543322 2357777764321 256799999999999999
Q ss_pred hcccCc
Q psy5772 216 VSNKSD 221 (654)
Q Consensus 216 ~~~~~~ 221 (654)
+.+++.
T Consensus 93 ~~al~~ 98 (99)
T cd00900 93 VEALQQ 98 (99)
T ss_pred HHHHhc
Confidence 998864
No 62
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=96.99 E-value=0.0022 Score=56.28 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=77.7
Q ss_pred ccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEe-------cCC-----------Cce
Q psy5772 98 KCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKK-------KSN-----------GSY 159 (654)
Q Consensus 98 ~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~-------~~~-----------~~~ 159 (654)
+...-++++. |++.+.+.|+++.......+| . -++.+|.|..++|+.-+ |.. +-+
T Consensus 17 Kev~~lsmgd-LL~h~~v~WLNp~~slgk~kK---e---~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~ 89 (160)
T cd01255 17 KQPIDLSPGD-LLYHGGVEWLNPSDSLGKIKK---E---LELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPF 89 (160)
T ss_pred ccccccCHHH-hhhhcceeeecCChhhccccC---C---ceEEEEEecceEEEEEcCcchhhhccccccccccccccCce
Confidence 3333355544 788899999987655332222 1 35779999887766532 111 246
Q ss_pred EEEeeccccceEEEEccCCCCCCCCceEEE-EEeecCCCccEE-EEEEcCChhhhhhhhcccCccc
Q psy5772 160 SVIDYCTRAMMQMAAIEDSVPPTNKYLILL-TILENHEQKTVE-IVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 160 ~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~-~~~~~~~~~~~~-~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
.+...+|.+.++|......+.. +...|.+ +.....+||++. |.|.|++++.|...+..|+..+
T Consensus 90 rfr~miP~~alQVR~~n~ad~e-~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsil 154 (160)
T cd01255 90 RFRVLIPVTALQVRASSAADME-SNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSIL 154 (160)
T ss_pred eEEEeeceeeeeeecCCCcCcc-cceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHH
Confidence 6777789999999886543322 2344444 344445777754 9999999999999999887655
No 63
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.90 E-value=0.0029 Score=52.69 Aligned_cols=77 Identities=14% Similarity=-0.007 Sum_probs=51.7
Q ss_pred cceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhh
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLN 215 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W 215 (654)
++.++++|.++.|.+.+............+++....+... ....+.|.+.... ...|.|+|.|++++..|
T Consensus 15 W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~-----~~~~~~F~i~~~~-----~~~~~~~a~s~~e~~~W 84 (91)
T cd01246 15 WQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISED-----DSDDKCFTIDTGG-----DKTLHLRANSEEERQRW 84 (91)
T ss_pred ceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEEC-----CCCCcEEEEEcCC-----CCEEEEECCCHHHHHHH
Confidence 4677899999999998866543223444555555444331 1124777775321 15699999999999999
Q ss_pred hcccCcc
Q psy5772 216 VSNKSDK 222 (654)
Q Consensus 216 ~~~~~~~ 222 (654)
|.+++.+
T Consensus 85 i~al~~a 91 (91)
T cd01246 85 VDALELA 91 (91)
T ss_pred HHHHHhC
Confidence 9988753
No 64
>KOG4269|consensus
Probab=96.89 E-value=0.0004 Score=77.52 Aligned_cols=127 Identities=22% Similarity=0.238 Sum_probs=97.2
Q ss_pred CCcccccccccccccCcHHHHHHHHHhcCCCCcchH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 19 LSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYE----------TCHTTLATLNKIVHECNEEARKMERYYEMLLLSR 88 (654)
Q Consensus 19 l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~----------~l~~Al~~i~~i~~~vN~~~~~~e~~~~l~~l~~ 88 (654)
.+..-.|-+|+-|+++..+-|-++||++|-.|||+- -|+.|++....++..+|+.....+ ++.
T Consensus 473 ~~~~~~l~rpi~~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~~r----~~~--- 545 (1112)
T KOG4269|consen 473 KDEEWLLYRPIDRVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEPRR----LLE--- 545 (1112)
T ss_pred cchhhhhccchhhhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhh----hhh---
Confidence 355667899999999999999999999999999988 899999999999999998665522 221
Q ss_pred hhcccccccccCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEec-----CCCceEEEe
Q psy5772 89 LIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKK-----SNGSYSVID 163 (654)
Q Consensus 89 ~i~~~~~~~~~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~-----~~~~~~~~~ 163 (654)
|.. -...|++++.+-+..+.... + +-+|+|||.+.|+++|-+ .+..|.++.
T Consensus 546 ---f~k--------s~~~rq~L~d~f~~~v~~~~-----~--------~~~~~~~~~~~ll~tk~~~~k~~~nq~y~~~~ 601 (1112)
T KOG4269|consen 546 ---FLK--------SGELRQLLKDVFFVEVEEAQ-----R--------KLRHVFLFTNSLLCTKLKKLKDGKNQQYDCKW 601 (1112)
T ss_pred ---hcc--------cchhHhhhhhheeecccccc-----c--------cchhhHHHhhccchhhhhhhcccccccCceeE
Confidence 210 23567788888887664311 1 346799999999999832 234799999
Q ss_pred eccccceEEEEcc
Q psy5772 164 YCTRAMMQMAAIE 176 (654)
Q Consensus 164 ~~~~~~l~v~~~~ 176 (654)
++++..+.|....
T Consensus 602 ~Ipl~d~~v~~~~ 614 (1112)
T KOG4269|consen 602 YIPLKDLQVNRYN 614 (1112)
T ss_pred EEeccccccCCcc
Confidence 9998888776543
No 65
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=96.83 E-value=0.0048 Score=52.73 Aligned_cols=80 Identities=8% Similarity=-0.005 Sum_probs=52.8
Q ss_pred cceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCC-CCCCceEEEEEeecCCCccEEEEEEcCChhhhhh
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVP-PTNKYLILLTILENHEQKTVEIVLSCDTESESSL 214 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~ 214 (654)
++.|++.|-+..|.+-|..... .....+++..+.+...++... ....+.|.+. ....+|.|+|.|++++..
T Consensus 18 WkkRwfvL~~~~L~yyk~~~~~--~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~------t~~rt~~~~A~s~~e~~~ 89 (100)
T cd01233 18 WTRRFVVVRRPYLHIYRSDKDP--VERGVINLSTARVEHSEDQAAMVKGPNTFAVC------TKHRGYLFQALSDKEMID 89 (100)
T ss_pred cEEEEEEEECCEEEEEccCCCc--cEeeEEEecccEEEEccchhhhcCCCcEEEEE------CCCCEEEEEcCCHHHHHH
Confidence 5677899999999988865432 233445555555554333211 1134677763 224569999999999999
Q ss_pred hhcccCccc
Q psy5772 215 NVSNKSDKI 223 (654)
Q Consensus 215 W~~~~~~~~ 223 (654)
||.+|+...
T Consensus 90 Wi~ai~~~~ 98 (100)
T cd01233 90 WLYALNPLY 98 (100)
T ss_pred HHHHhhhhh
Confidence 999997543
No 66
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=96.69 E-value=0.0073 Score=50.56 Aligned_cols=76 Identities=12% Similarity=0.031 Sum_probs=52.3
Q ss_pred cceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhh
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLN 215 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W 215 (654)
+++|+++|=+..|.+.|.+.......+..+++....+... ...++.|.+.. +...+|.|.|.|+++++.|
T Consensus 15 Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~-----~~~~~~F~i~~-----~~~r~~~L~A~s~~e~~~W 84 (91)
T cd01247 15 WQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAH-----EFDENRFDISV-----NENVVWYLRAENSQSRLLW 84 (91)
T ss_pred CceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcC-----CCCCCEEEEEe-----CCCeEEEEEeCCHHHHHHH
Confidence 5778899988888898876554334556666665444321 22346677642 1236799999999999999
Q ss_pred hcccCc
Q psy5772 216 VSNKSD 221 (654)
Q Consensus 216 ~~~~~~ 221 (654)
|++|++
T Consensus 85 i~al~~ 90 (91)
T cd01247 85 MDSVVR 90 (91)
T ss_pred HHHHhh
Confidence 998864
No 67
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.62 E-value=0.0016 Score=55.73 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=25.6
Q ss_pred eEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeeccC
Q psy5772 610 WLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVAG 654 (654)
Q Consensus 610 ~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit~ 654 (654)
.||++|.|+... .+. +.|.++|+|||||+||+|.
T Consensus 1 e~ikeG~L~K~~--------~~~---~~~k~RyffLFnd~Ll~~~ 34 (101)
T cd01219 1 ELLKEGSVLKIS--------STT---EKTEERYLFLFNDLLLYCV 34 (101)
T ss_pred CcccceEEEEEe--------cCC---CCceeEEEEEeCCEEEEEE
Confidence 378999999885 221 1244899999999999873
No 68
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.57 E-value=0.0084 Score=50.81 Aligned_cols=78 Identities=13% Similarity=0.024 Sum_probs=55.5
Q ss_pred ccceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhh
Q psy5772 135 FYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSL 214 (654)
Q Consensus 135 ~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~ 214 (654)
.|+.|++.|=+..|.+.+... -..+..+++..+.............++.|.+.... .+|.++|+|++|++.
T Consensus 20 n~KkRwF~Lt~~~L~Y~k~~~---~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~------r~~yi~a~s~~E~~~ 90 (98)
T cd01244 20 HFKKRYFQLTTTHLSWAKDVQ---CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED------DTMQLQFEAPVEATD 90 (98)
T ss_pred CCceeEEEECCCEEEEECCCC---CceeeeEEccceEEEEEcCCcccCCCceEEEEeCC------CeEEEECCCHHHHHH
Confidence 467788888888999998543 24566777777666554333333345677765422 369999999999999
Q ss_pred hhcccCc
Q psy5772 215 NVSNKSD 221 (654)
Q Consensus 215 W~~~~~~ 221 (654)
||+++++
T Consensus 91 Wi~al~k 97 (98)
T cd01244 91 WLNALEK 97 (98)
T ss_pred HHHHHhc
Confidence 9998875
No 69
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=96.44 E-value=0.0093 Score=50.44 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=52.0
Q ss_pred ccceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhh
Q psy5772 135 FYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSL 214 (654)
Q Consensus 135 ~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~ 214 (654)
.++.+++.|-++.|.+-+...... ....+++....+....+.. ..+.|.+.. .+ ...|.|+|.|+++...
T Consensus 19 ~WkkrwfvL~~~~L~yyk~~~~~~--~~~~I~L~~~~v~~~~~~~---k~~~F~I~~----~~-~~~~~f~a~s~~e~~~ 88 (96)
T cd01260 19 KWARRWFVLKGTTLYWYRSKQDEK--AEGLIFLSGFTIESAKEVK---KKYAFKVCH----PV-YKSFYFAAETLDDLSQ 88 (96)
T ss_pred CceeEEEEEECCEEEEECCCCCCc--cceEEEccCCEEEEchhcC---CceEEEECC----CC-CcEEEEEeCCHHHHHH
Confidence 356788999999999988654322 3345566666665543222 345666642 11 2569999999999999
Q ss_pred hhcccCc
Q psy5772 215 NVSNKSD 221 (654)
Q Consensus 215 W~~~~~~ 221 (654)
||.+|+.
T Consensus 89 Wi~ai~~ 95 (96)
T cd01260 89 WVNHLIT 95 (96)
T ss_pred HHHHHHh
Confidence 9998864
No 70
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.40 E-value=0.011 Score=52.70 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=57.0
Q ss_pred cceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecC---------------CCccE
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENH---------------EQKTV 200 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~---------------~~~~~ 200 (654)
++.+++.|-++.|.+-+...+ -.....+++..+.|...++. ...+.|.+....+. .+...
T Consensus 16 WkkRwfvL~~~~L~yyk~~~~--~~~~g~I~L~~~~v~~~~~~---~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 90 (125)
T cd01252 16 WKRRWFILTDNCLYYFEYTTD--KEPRGIIPLENVSIREVEDP---SKPFCFELFSPSDKQQIKACKTESDGRVVEGNHS 90 (125)
T ss_pred eEeEEEEEECCEEEEEcCCCC--CCceEEEECCCcEEEEcccC---CCCeeEEEECCccccccccccccccccccccCce
Confidence 467789999888877774332 23456667777766665432 23466766543330 13346
Q ss_pred EEEEEcCChhhhhhhhcccCcccc
Q psy5772 201 EIVLSCDTESESSLNVSNKSDKIL 224 (654)
Q Consensus 201 ~~~l~a~s~~~k~~W~~~~~~~~~ 224 (654)
.|.|+|.|+++...||.+|+.++.
T Consensus 91 ~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 91 VYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHh
Confidence 788999999999999999988774
No 71
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.32 E-value=0.017 Score=49.52 Aligned_cols=83 Identities=7% Similarity=-0.035 Sum_probs=47.4
Q ss_pred cceEEEEec-CCeEEEEEecCCCceEEEeeccccceEEEEccCCC-CCCCCceEEEEEeecCCCccEEEEEEcCChhhhh
Q psy5772 136 YAKLNLFLF-TDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSV-PPTNKYLILLTILENHEQKTVEIVLSCDTESESS 213 (654)
Q Consensus 136 ~~~~~~fLF-~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~ 213 (654)
++.|++.|- +..|++-+.+..... ....++..+.|..+.... .....+.|.+.+......... +|+|.|+++++
T Consensus 17 Wk~R~f~L~~~~~l~~yk~~~~~~~--~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r--~f~a~s~ee~~ 92 (102)
T cd01241 17 WRPRYFLLKSDGSFIGYKEKPEDGD--PFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTTVIER--TFHVESPEERE 92 (102)
T ss_pred CeeEEEEEeCCCeEEEEecCCCccC--ccccccCCeEEeeeeeeeccCCCcceEEEEeccCCcccCE--EEEeCCHHHHH
Confidence 467788888 445666665443222 124456666654443211 112236777763321111122 56799999999
Q ss_pred hhhcccCcc
Q psy5772 214 LNVSNKSDK 222 (654)
Q Consensus 214 ~W~~~~~~~ 222 (654)
.||.+|+.+
T Consensus 93 eWi~ai~~v 101 (102)
T cd01241 93 EWIHAIQTV 101 (102)
T ss_pred HHHHHHHhh
Confidence 999998754
No 72
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.05 E-value=0.028 Score=48.16 Aligned_cols=80 Identities=10% Similarity=0.009 Sum_probs=46.0
Q ss_pred cccceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhh
Q psy5772 134 HFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESS 213 (654)
Q Consensus 134 ~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~ 213 (654)
+.++.|++.|.++-+|+..+.......-+..+.++......... .....++.|.+.. ...+|.|.|.|++|++
T Consensus 22 K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~-~~~~~~~~f~I~t------p~R~f~l~Aete~E~~ 94 (104)
T cd01236 22 KRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAE-ARTGQKFSICILT------PDKEHFIKAETKEEIS 94 (104)
T ss_pred ccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecc-cccCCccEEEEEC------CCceEEEEeCCHHHHH
Confidence 33566778888777777654332122223444444332221111 1111246666653 2356999999999999
Q ss_pred hhhcccC
Q psy5772 214 LNVSNKS 220 (654)
Q Consensus 214 ~W~~~~~ 220 (654)
.||+.|+
T Consensus 95 ~Wi~~l~ 101 (104)
T cd01236 95 WWLNMLM 101 (104)
T ss_pred HHHHHHH
Confidence 9999875
No 73
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.00 E-value=0.02 Score=47.85 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=48.4
Q ss_pred cceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhh
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLN 215 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W 215 (654)
++.+++.|-+..|.+-+............+.+....+....+.. ...+.|.+... ...|.|+|.|+++...|
T Consensus 16 W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~--~~~~~f~i~~~------~~~~~f~a~s~~~~~~W 87 (94)
T cd01250 16 WKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQP--DRRFCFEVISP------TKTWHFQADSEEERDDW 87 (94)
T ss_pred ceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCcccc--CCceEEEEEcC------CcEEEEECCCHHHHHHH
Confidence 57788999888888876443211112233444444444433221 13466666521 15699999999999999
Q ss_pred hcccCc
Q psy5772 216 VSNKSD 221 (654)
Q Consensus 216 ~~~~~~ 221 (654)
|.+|++
T Consensus 88 i~al~~ 93 (94)
T cd01250 88 ISAIQE 93 (94)
T ss_pred HHHHhc
Confidence 998864
No 74
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.93 E-value=0.0069 Score=50.96 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=25.9
Q ss_pred eEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeeccC
Q psy5772 610 WLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVAG 654 (654)
Q Consensus 610 ~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit~ 654 (654)
.+|++|++...+. ..+.... .+++|||||+||+++
T Consensus 1 ~~i~~G~l~e~~~------~~~kp~~----rv~~FLfND~Lvva~ 35 (100)
T cd01226 1 KVILYGELEEFDV------ETKKPVQ----RVMLFLLNDRLIVGN 35 (100)
T ss_pred CEEEcCcEEEech------hhCCccc----eEEEEEeccEEEEEE
Confidence 3789999999862 1233333 688999999999974
No 75
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=95.78 E-value=0.023 Score=48.73 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=45.6
Q ss_pred cceEEEEecCCeEEEEEecCCCceEEEeeccccce----EEEE-ccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChh
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMM----QMAA-IEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTES 210 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l----~v~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~ 210 (654)
++.|++.|=++.|.+-+.+... ..+..+++..+ .|.. +.+.......+.|.+.. ...+|.|.|+|++
T Consensus 16 wkkRwFvL~~~~L~Yyk~~~d~--~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t------~~Rty~l~a~s~~ 87 (103)
T cd01251 16 FKKRWFTLDDRRLMYFKDPLDA--FAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVT------PERKFLFACETEQ 87 (103)
T ss_pred ceeEEEEEeCCEEEEECCCCCc--CcCcEEEeeccccceeEeccCCccccccccceEEEEe------CCeEEEEECCCHH
Confidence 3556677777788777754321 12222233221 1211 11111111123566542 2467999999999
Q ss_pred hhhhhhcccCccc
Q psy5772 211 ESSLNVSNKSDKI 223 (654)
Q Consensus 211 ~k~~W~~~~~~~~ 223 (654)
++..||++|++++
T Consensus 88 e~~~Wi~ai~~v~ 100 (103)
T cd01251 88 DRREWIAAFQNVL 100 (103)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999887
No 76
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.75 E-value=0.034 Score=47.72 Aligned_cols=82 Identities=15% Similarity=0.046 Sum_probs=48.3
Q ss_pred ccccceEEEEecCCeEEEEEecCCCceEEEeecc--ccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChh
Q psy5772 133 THFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCT--RAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTES 210 (654)
Q Consensus 133 ~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~--~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~ 210 (654)
...++.+++.|-...|+|-|..+...-.....++ +....+.... +....++.|.+... .| .+|.|+|.|++
T Consensus 20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~--~~~k~~~~F~l~~~---~~--~~~~f~a~s~e 92 (104)
T cd01253 20 NRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVAS--DYTKKKHVFRLRLP---DG--AEFLFQAPDEE 92 (104)
T ss_pred CCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecC--CcccCceEEEEEec---CC--CEEEEECCCHH
Confidence 3456788999999999998854321001111112 2122222111 11223477777642 12 46999999999
Q ss_pred hhhhhhcccCc
Q psy5772 211 ESSLNVSNKSD 221 (654)
Q Consensus 211 ~k~~W~~~~~~ 221 (654)
+...|+..|+.
T Consensus 93 ~~~~Wi~aL~~ 103 (104)
T cd01253 93 EMSSWVRALKS 103 (104)
T ss_pred HHHHHHHHHhc
Confidence 99999998864
No 77
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.54 E-value=0.057 Score=45.88 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=44.1
Q ss_pred cceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEE-ccCCCC-CCCCceEEEEEeecCCCccEEEEEEcCChhhhh
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAA-IEDSVP-PTNKYLILLTILENHEQKTVEIVLSCDTESESS 213 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~-~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~ 213 (654)
++.+++.|=+..|.+-|...... .....++++.+.... ..+... ....++|.+.. ...+|.|+|.|+++++
T Consensus 19 WkrRwF~L~~~~L~y~K~~~~~~-~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~t------p~rt~~l~A~se~e~e 91 (101)
T cd01264 19 WKTRYFTLSGAQLLFQKGKSKDD-PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFT------ADKTYILKAKDEKNAE 91 (101)
T ss_pred ceeEEEEEeCCEEEEEeccCccC-CCCceEEcccceEEeeccccccccccCcEEEEEc------CCceEEEEeCCHHHHH
Confidence 35566777777776666443211 001222333322211 111110 01136777652 3356999999999999
Q ss_pred hhhcccCcc
Q psy5772 214 LNVSNKSDK 222 (654)
Q Consensus 214 ~W~~~~~~~ 222 (654)
.||++|+.+
T Consensus 92 ~WI~~i~~a 100 (101)
T cd01264 92 EWLQCLNIA 100 (101)
T ss_pred HHHHHHHhh
Confidence 999998765
No 78
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=95.51 E-value=0.044 Score=46.64 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=45.3
Q ss_pred cceEEEEecCC--eEEEEEecCCCceEEEeeccccceEEEEc-cCC--CCC--CCCceEEEEEeecCCCccEEEEEEcCC
Q psy5772 136 YAKLNLFLFTD--LLVITKKKSNGSYSVIDYCTRAMMQMAAI-EDS--VPP--TNKYLILLTILENHEQKTVEIVLSCDT 208 (654)
Q Consensus 136 ~~~~~~fLF~d--~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~-~~~--~~~--~~~~~f~~~~~~~~~~~~~~~~l~a~s 208 (654)
++.|++.|-.+ .|.+-+.... ...+..+++..+..... ... .+. .....|.+. ....+|.|.|.|
T Consensus 15 WkkRwFvL~~~~~~L~Yy~~~~~--~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~------t~~r~~~~~a~s 86 (101)
T cd01235 15 WKPRWFVLDPDKHQLRYYDDFED--TAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLK------TSKRTYNFLAEN 86 (101)
T ss_pred ccceEEEEECCCCEEEEecCCCC--CccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEE------eCCceEEEECCC
Confidence 56677888744 6666664322 33345555554432222 111 111 112334332 123569999999
Q ss_pred hhhhhhhhcccCccc
Q psy5772 209 ESESSLNVSNKSDKI 223 (654)
Q Consensus 209 ~~~k~~W~~~~~~~~ 223 (654)
++++..||.+|+.+|
T Consensus 87 ~~e~~~Wi~ai~~~i 101 (101)
T cd01235 87 INEAQRWKEKIQQCI 101 (101)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998654
No 79
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.37 E-value=0.019 Score=50.02 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=27.9
Q ss_pred CceEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 608 SRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 608 ~R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
.+.||.+|.++++....+ . ..+.+ ++|+|||+|+||+|
T Consensus 2 qG~Ll~Q~~f~v~~~~~~--~--~~K~~----eR~vFLFe~~lvfs 39 (114)
T cd01232 2 QGKLLLQDTFQVWDPKAG--L--IQKGR----ERRVFLFEQSIIFA 39 (114)
T ss_pred CCceEEEccEEEEeCCcc--c--cCCCc----eeEEEEeeceEEEE
Confidence 368999999999963221 1 12233 88999999999997
No 80
>KOG0931|consensus
Probab=94.97 E-value=0.063 Score=56.26 Aligned_cols=111 Identities=20% Similarity=0.123 Sum_probs=67.3
Q ss_pred CchhhhcccchhhccHHHHHHHHHHhCCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy5772 522 SLHSFLMLPMQRVTRLPLLFDAILTRLRP----NHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLK 597 (654)
Q Consensus 522 ~L~s~Li~PvQRi~rY~lLL~~llk~t~~----~~~d~~~l~~al~~i~~l~~~~n~~~~~~e~~~~l~~l~~~i~~~~~ 597 (654)
++.|==++|=++ +.|++.+|+... ..-+++.|.--++.|++---+.| .+...++..+.+.|.+.+
T Consensus 338 DmySPnVKperk-----M~leDFikNLRGvDnGeDIpRell~GIYeRIqk~ELktn-----dDHVsqVqkVer~IVGkk- 406 (627)
T KOG0931|consen 338 DMYSPNVKPERK-----MKLEDFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTN-----DDHVSQVQKVERAIVGKK- 406 (627)
T ss_pred cccCCCCCHHHh-----hhHHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccC-----cchHHHHHHHHHHHhcCC-
Confidence 344444566554 446666676642 23344555555555544322222 233455666777787652
Q ss_pred cccccccccCCceEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 598 EVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 598 ~~~~~~l~~~~R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
+..|-.+.|+||+...|..+..++++ .|. +.+.+-+|||||+||+|
T Consensus 407 ---~~vLs~phRRLVC~crL~eV~Dpnk~---Qk~----~ahqReVFLFNDllVV~ 452 (627)
T KOG0931|consen 407 ---PPVLSLPHRRLVCYCRLFEVPDPNKP---QKL----GAHQREVFLFNDLLVVT 452 (627)
T ss_pred ---CcccccCCceEEEEEeeeecCCCCch---hhc----ccccceeeeecchhhhh
Confidence 22455699999999999999644432 222 33488999999999986
No 81
>KOG0930|consensus
Probab=94.63 E-value=0.059 Score=52.92 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=57.0
Q ss_pred ceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeec----------------CCCccE
Q psy5772 137 AKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILEN----------------HEQKTV 200 (654)
Q Consensus 137 ~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~----------------~~~~~~ 200 (654)
+.++++|=++||-+--..... .-+..+++..+.+..+++...+ ++|.+....+ -+|+..
T Consensus 278 KrRWFiLtdNCLYYFe~tTDK--EPrGIIpLeNlsir~VedP~kP---~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~ 352 (395)
T KOG0930|consen 278 KRRWFILTDNCLYYFEYTTDK--EPRGIIPLENLSIREVEDPKKP---NCFELYIPSNKGQVIKACKTEADGRVVEGNHS 352 (395)
T ss_pred hheeEEeecceeeeeeeccCC--CCCcceeccccceeeccCCCCC---CeEEEecCCCCcCeeeeecccCCceeEeccce
Confidence 445678888888876532211 1134567888888888775544 5666544333 145667
Q ss_pred EEEEEcCChhhhhhhhcccCccc
Q psy5772 201 EIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 201 ~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
.|-+.|.|.++|..||..|+.++
T Consensus 353 vYrIsA~~~Ee~~~Wi~sI~a~i 375 (395)
T KOG0930|consen 353 VYRISAPTPEEKDEWIKSIKAAI 375 (395)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHh
Confidence 79999999999999999998777
No 82
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=93.53 E-value=0.27 Score=42.51 Aligned_cols=80 Identities=10% Similarity=-0.036 Sum_probs=44.3
Q ss_pred cceEEEEecCCeE-------EEEEecCCCceEEEeeccccceEEEEccCCC-CCCCCceEEEEEeecCCCccEEEEEEcC
Q psy5772 136 YAKLNLFLFTDLL-------VITKKKSNGSYSVIDYCTRAMMQMAAIEDSV-PPTNKYLILLTILENHEQKTVEIVLSCD 207 (654)
Q Consensus 136 ~~~~~~fLF~d~L-------l~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~l~a~ 207 (654)
++.|++.|-++-+ .+-|.. .....+..+++..+.+.+..... .....+.|.+.+. . ...+|.|.|.
T Consensus 19 WkrRwFvL~~~~l~~~~~~L~Yyk~~--~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~--t--~~r~y~l~A~ 92 (108)
T cd01266 19 WVRRYFVLHCGDRERNLFALEYYKTS--RKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIE--T--IVRDLYLVAK 92 (108)
T ss_pred cEEEEEEEeccccCCCcceEEEECCC--CCCccceEEECCccEEEcccccccccCcccceEEEEE--e--CCccEEEEEC
Confidence 5677788887653 444422 22344455566665443321110 1111222222222 2 2357999999
Q ss_pred ChhhhhhhhcccCc
Q psy5772 208 TESESSLNVSNKSD 221 (654)
Q Consensus 208 s~~~k~~W~~~~~~ 221 (654)
|+++...||.+|.+
T Consensus 93 s~ee~~~Wi~~I~~ 106 (108)
T cd01266 93 NEEEMTLWVNCICK 106 (108)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999864
No 83
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.49 E-value=0.24 Score=41.69 Aligned_cols=74 Identities=9% Similarity=-0.023 Sum_probs=42.6
Q ss_pred ceEEEEecCC--eEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhh
Q psy5772 137 AKLNLFLFTD--LLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSL 214 (654)
Q Consensus 137 ~~~~~fLF~d--~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~ 214 (654)
+.+++.|=++ .|.+.|...+ ......+++....+.... ...++.|.+.. ...+|.|+|.|++++..
T Consensus 18 kkRWFvL~~~~~~L~Yyk~~~d--~~p~G~I~L~~~~~~~~~----~~~~~~F~i~t------~~r~y~l~A~s~~e~~~ 85 (95)
T cd01265 18 RSRWFALDDRTCYLYYYKDSQD--AKPLGRVDLSGAAFTYDP----REEKGRFEIHS------NNEVIALKASSDKQMNY 85 (95)
T ss_pred eeEEEEEcCCCcEEEEECCCCc--ccccceEECCccEEEcCC----CCCCCEEEEEc------CCcEEEEECCCHHHHHH
Confidence 4455555432 4666654332 123344444443333211 11246777642 23569999999999999
Q ss_pred hhcccCcc
Q psy5772 215 NVSNKSDK 222 (654)
Q Consensus 215 W~~~~~~~ 222 (654)
||++|+.+
T Consensus 86 Wi~al~~~ 93 (95)
T cd01265 86 WLQALQSK 93 (95)
T ss_pred HHHHHHhh
Confidence 99988754
No 84
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.98 E-value=0.33 Score=42.80 Aligned_cols=86 Identities=12% Similarity=-0.023 Sum_probs=46.4
Q ss_pred cceEEEEecCCeEEEEEecCCCc-eEEEeeccccceEEEEccCCC--CCCCCceEEEEEeecC-------------CCcc
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGS-YSVIDYCTRAMMQMAAIEDSV--PPTNKYLILLTILENH-------------EQKT 199 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~-~~~~~~~~~~~l~v~~~~~~~--~~~~~~~f~~~~~~~~-------------~~~~ 199 (654)
++.+++.|...+|.+-+...... -.....+++..+.+..+.... ....+++|.+....+. .+-.
T Consensus 19 W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~ 98 (122)
T cd01263 19 WHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIE 98 (122)
T ss_pred ceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCcee
Confidence 35667888755555555333211 112233333333333332111 1223588888765443 1111
Q ss_pred EE-EEEEcCChhhhhhhhcccCc
Q psy5772 200 VE-IVLSCDTESESSLNVSNKSD 221 (654)
Q Consensus 200 ~~-~~l~a~s~~~k~~W~~~~~~ 221 (654)
.+ +.|.|.|.++++.||++|.+
T Consensus 99 r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 99 RLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred EEEEEEecCCHHHHHHHHHHHhc
Confidence 22 66889999999999998875
No 85
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.67 E-value=0.47 Score=41.61 Aligned_cols=83 Identities=11% Similarity=-0.002 Sum_probs=50.0
Q ss_pred cccceEEEEecCCeEEEEEecCC-C---ce-EEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCC
Q psy5772 134 HFYAKLNLFLFTDLLVITKKKSN-G---SY-SVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDT 208 (654)
Q Consensus 134 ~~~~~~~~fLF~d~Ll~~k~~~~-~---~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s 208 (654)
+.++.+||.|-...|.|-|.... + .+ .+...+.+..-..+-. .+....++.|.+....+ ..|.|+|.+
T Consensus 24 R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia--~dy~Kr~~VF~L~~~~g-----~~~lfqA~~ 96 (117)
T cd01230 24 RSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRA--SDYSKKPHVFRLRTADW-----REFLFQTSS 96 (117)
T ss_pred CcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEee--ccccCCCcEEEEEcCCC-----CEEEEECCC
Confidence 44678999999999999885432 0 11 1111112222111111 12233467888764332 359999999
Q ss_pred hhhhhhhhcccCccc
Q psy5772 209 ESESSLNVSNKSDKI 223 (654)
Q Consensus 209 ~~~k~~W~~~~~~~~ 223 (654)
.++...||..|.-+.
T Consensus 97 ~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 97 LKELQSWIERINVVA 111 (117)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887443
No 86
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.66 E-value=0.18 Score=45.09 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=26.8
Q ss_pred ceEEEEeeeEEEeccccchhhc----ccccccccceEEEEecCCeeecc
Q psy5772 609 RWLVRSGSMNFVNVDSKMTFAR----KLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 609 R~Li~~G~l~~~~~~~~~~~~~----k~~~~~~~~~~~lfLFnD~Llit 653 (654)
+.|+++|.++++....+ +.+. +.+.+ ++|+|||..++|+|
T Consensus 1 G~ll~Qd~f~Vw~~~~~-~~~~k~~~r~K~~----eRhVFLFE~~viF~ 44 (133)
T cd01227 1 GKLLMQGSFSVWTDHKK-GHTKKELARFKPM----QRHIFLHEKAVLFC 44 (133)
T ss_pred CCceEecceEEEEcccc-ccchhhhhccCCc----eeEEEEecceEEEE
Confidence 36899999999862111 1100 12233 89999999999998
No 87
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.60 E-value=0.55 Score=39.70 Aligned_cols=53 Identities=6% Similarity=-0.086 Sum_probs=35.0
Q ss_pred eeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCc
Q psy5772 163 DYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSD 221 (654)
Q Consensus 163 ~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~ 221 (654)
+.+++..+.|..+.+..-+ ..++|.+..... ..+|.+.|++ ++++.||+.|++
T Consensus 45 gli~l~~~~V~~v~ds~~~-r~~cFel~~~~~----~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 45 GLIDLSDAYLYPVHDSLFG-RPNCFQIVERAL----PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ceeeccccEEEEccccccC-CCeEEEEecCCC----CeEEEEeCCH-HHHHHHHHHHhc
Confidence 4456666667666553222 247888764332 2568888888 999999998874
No 88
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=91.19 E-value=0.38 Score=41.01 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=24.5
Q ss_pred CceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccC
Q psy5772 184 KYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 184 ~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~ 220 (654)
++.|.+.. ...+|.|.|.|+++++.|+.+|.
T Consensus 69 ~~~f~i~t------~dr~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 69 RHLIALYT------RDEYFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred CeEEEEEe------CCceEEEEeCCHHHHHHHHHHHh
Confidence 46777654 22469999999999999999875
No 89
>KOG1729|consensus
Probab=90.39 E-value=0.069 Score=54.19 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=62.7
Q ss_pred cCCcccCCceEEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCC-ceEEEeeccccceEEEEccC
Q psy5772 99 CLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNG-SYSVIDYCTRAMMQMAAIED 177 (654)
Q Consensus 99 ~~~l~~~~r~li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~-~~~~~~~~~~~~l~v~~~~~ 177 (654)
..++..++|.|+.+|.++.. .+|.. +.+..|||+|+++++-....+ .|..-+..++..+.+....+
T Consensus 36 ~~~~~~~grv~~~q~~~~k~--------~rk~~-----q~r~~~l~~D~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 102 (288)
T KOG1729|consen 36 GHPCRECGRVLCRQGTLVKR--------CRKKL-----QSRSFFLFNDILVYGNIVSDNKLLNKNHIIPLEGVSQESRSD 102 (288)
T ss_pred cCcccccchhhhhhhhhHHH--------Hhccc-----ccccccccccchhhcccccCHHHHhHHhcccccchhhhhhcc
Confidence 56777889999999988322 23222 445689999999999877666 55554444443343333322
Q ss_pred CCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccC
Q psy5772 178 SVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 178 ~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~ 220 (654)
...- .+... .......+.+.+.+..+|..|+.+|.
T Consensus 103 ~~~~--~~~~~------~~S~~ks~~~~~as~~ek~e~~~~i~ 137 (288)
T KOG1729|consen 103 NERV--RNGWQ------ILSALKSFTVLAASQTEKNEWQNHIT 137 (288)
T ss_pred cccc--ccchh------hhcccchhhhhcchhhhhHHHHHHHH
Confidence 2111 11111 12334558999999999999996443
No 90
>KOG0690|consensus
Probab=90.16 E-value=0.22 Score=50.63 Aligned_cols=82 Identities=9% Similarity=0.059 Sum_probs=52.6
Q ss_pred cceEEEEecCCeEEEEEe---cCCCceEEEeeccccceEEEEccC-CCCCCCCceEEEEEeecCCCccEEEEEEcCChhh
Q psy5772 136 YAKLNLFLFTDLLVITKK---KSNGSYSVIDYCTRAMMQMAAIED-SVPPTNKYLILLTILENHEQKTVEIVLSCDTESE 211 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~---~~~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~ 211 (654)
++++|+.||+|--++--+ +..... ..++....|.++.. .......|.|.+....|.- -.+-+|.+.|+++
T Consensus 31 WRpRYF~l~~DG~~~Gyr~kP~~~~~~----p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTT--VIERTF~ves~~e 104 (516)
T KOG0690|consen 31 WRPRYFLLFNDGTLLGYRSKPKEVQPT----PEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTT--VIERTFYVESAEE 104 (516)
T ss_pred ccceEEEEeeCCceEeeccCCccCCCC----cccccchhhhhhhhhhccCCCCceEEEEeeeeee--eeeeeeecCCHHH
Confidence 578889999998877643 222111 13455555555432 1112235899988877752 2335789999999
Q ss_pred hhhhhcccCccc
Q psy5772 212 SSLNVSNKSDKI 223 (654)
Q Consensus 212 k~~W~~~~~~~~ 223 (654)
|+.|+.+|+..-
T Consensus 105 Rq~W~~AIq~vs 116 (516)
T KOG0690|consen 105 RQEWIEAIQAVS 116 (516)
T ss_pred HHHHHHHHHHHh
Confidence 999999887544
No 91
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.08 E-value=1 Score=38.40 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=28.5
Q ss_pred ceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCc
Q psy5772 185 YLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSD 221 (654)
Q Consensus 185 ~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~ 221 (654)
..|.+.+.........+|.|.|.|+++...||.+.+-
T Consensus 65 ~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rl 101 (106)
T cd01237 65 QKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRL 101 (106)
T ss_pred cceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHH
Confidence 4577777665544456799999999999999997653
No 92
>PF15409 PH_8: Pleckstrin homology domain
Probab=87.79 E-value=4.3 Score=33.63 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=43.5
Q ss_pred ccceEEEEe-cCCeEE-EEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhh
Q psy5772 135 FYAKLNLFL-FTDLLV-ITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESES 212 (654)
Q Consensus 135 ~~~~~~~fL-F~d~Ll-~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k 212 (654)
=|..|++.| |++..| +.+-..++ .+...+++..-.|.- . . ....|.+. . | .+.|.|.|.|+++.
T Consensus 13 G~~kRyFvL~~~~G~LsYy~~~~~~--~~rGsi~v~~a~is~-~----~-~~~~I~id----s-g-~~i~hLKa~s~~~f 78 (89)
T PF15409_consen 13 GWHKRYFVLDFEKGTLSYYRNQNSG--KLRGSIDVSLAVISA-N----K-KSRRIDID----S-G-DEIWHLKAKSQEDF 78 (89)
T ss_pred CceeEEEEEEcCCcEEEEEecCCCC--eeEeEEEccceEEEe-c----C-CCCEEEEE----c-C-CeEEEEEcCCHHHH
Confidence 356777888 666444 44433332 555665554433321 1 1 11233332 1 2 45799999999999
Q ss_pred hhhhcccCcc
Q psy5772 213 SLNVSNKSDK 222 (654)
Q Consensus 213 ~~W~~~~~~~ 222 (654)
+.|+++++.+
T Consensus 79 ~~Wv~aL~~a 88 (89)
T PF15409_consen 79 QRWVSALQKA 88 (89)
T ss_pred HHHHHHHHhc
Confidence 9999988753
No 93
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=87.28 E-value=0.72 Score=40.63 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=46.5
Q ss_pred ccccceEEEEecCCeEEEEEecC---CCceE----EEee-----ccccceEEEEccCCCCCCCCceEEEEEeecCCCccE
Q psy5772 133 THFYAKLNLFLFTDLLVITKKKS---NGSYS----VIDY-----CTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTV 200 (654)
Q Consensus 133 ~~~~~~~~~fLF~d~Ll~~k~~~---~~~~~----~~~~-----~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 200 (654)
.+.++.+|+.|=...|.+.|... .+.+. .... +.+..-.... ..+....+|.|++...++ .
T Consensus 23 ~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~--a~dY~Kr~~VFrL~~~dg-----~ 95 (119)
T PF15410_consen 23 KRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEI--ASDYTKRKNVFRLRTADG-----S 95 (119)
T ss_dssp ---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEE--ETTBTTCSSEEEEE-TTS------
T ss_pred CCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEe--CcccccCCeEEEEEeCCC-----C
Confidence 34578899999999999998621 11111 1111 1122211222 223334579999885443 4
Q ss_pred EEEEEcCChhhhhhhhcccC
Q psy5772 201 EIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 201 ~~~l~a~s~~~k~~W~~~~~ 220 (654)
+|.|||.|+++-..||..|.
T Consensus 96 e~Lfqa~~~~~m~~Wi~~IN 115 (119)
T PF15410_consen 96 EYLFQASDEEEMNEWIDAIN 115 (119)
T ss_dssp EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 69999999999999999774
No 94
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.79 E-value=3.2 Score=35.36 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=18.8
Q ss_pred EEEEEEcCChhhhhhhhcccC
Q psy5772 200 VEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 200 ~~~~l~a~s~~~k~~W~~~~~ 220 (654)
.+++|||.|+.++..||+++.
T Consensus 82 ~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 82 GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred CeEEEEecCHHHHHHHHHhhc
Confidence 459999999999999999775
No 95
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=86.69 E-value=1.2 Score=37.31 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCc
Q psy5772 179 VPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSD 221 (654)
Q Consensus 179 ~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~ 221 (654)
+.+++.|+|.++...+ .+|+|.|.++++.+.|+++|+.
T Consensus 69 EmPD~~nTFvLK~~~~-----~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 69 EMPDNLYTFVLKVDDN-----TDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccCcccEEEEEecCC-----ceEEEEcCCHHHHHHHHHHHhc
Confidence 3456789999886443 3599999999999999999974
No 96
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=85.11 E-value=1.7 Score=37.85 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.0
Q ss_pred ccEEEEEEcCChhhhhhhhcccCc
Q psy5772 198 KTVEIVLSCDTESESSLNVSNKSD 221 (654)
Q Consensus 198 ~~~~~~l~a~s~~~k~~W~~~~~~ 221 (654)
...+|.|.|.|.+++..||.+++.
T Consensus 88 ~~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 88 PTKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp SS-EEEEEESSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHHHHh
Confidence 346799999999999999998764
No 97
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.14 E-value=8.4 Score=33.97 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=25.0
Q ss_pred CceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCcc
Q psy5772 184 KYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDK 222 (654)
Q Consensus 184 ~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~ 222 (654)
.+.|.+. ....+|.|.|.|+.+.+.|+..|+.+
T Consensus 89 ~~~~~i~------t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 89 RHGLKIT------NSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ceEEEEE------cCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3555554 33456999999999999999988753
No 98
>KOG1029|consensus
Probab=73.88 E-value=3 Score=47.05 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=31.9
Q ss_pred CCcccccCCCcCccCcchhhhhhccccccccccCCCCccchh
Q psy5772 242 VPAFVDSGTYPVQENPKIVAVFLLEGIHQIKHLPPQGSAYWD 283 (654)
Q Consensus 242 ~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~ 283 (654)
+.++....+|.|++.|+++ +.++ ||+.+..+...-||
T Consensus 1053 v~qviamYdY~AqndDELs----F~kg-diI~VlnkdepeWW 1089 (1118)
T KOG1029|consen 1053 VCQVIAMYDYEAQNDDELS----FKKG-DIINVLNKDEPEWW 1089 (1118)
T ss_pred cceeEEeeccccCCccccc----ccCC-CEEEecCCCChhhh
Confidence 3466778999999999999 7777 99999999888888
No 99
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=73.51 E-value=28 Score=38.82 Aligned_cols=36 Identities=3% Similarity=0.110 Sum_probs=29.8
Q ss_pred CCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 183 NKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 183 ~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
.++.|.+.+..+ ..+.|+|.+.+++..||..|++++
T Consensus 454 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 454 AAHVFAVAFKTG-----RRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCcEEEEEecCC-----cEEEEecCCchhHHHHHHHHHHhc
Confidence 468888876444 348999999999999999999877
No 100
>PF15406 PH_6: Pleckstrin homology domain
Probab=72.14 E-value=6.9 Score=33.35 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=29.9
Q ss_pred cccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccC
Q psy5772 166 TRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 166 ~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~ 220 (654)
|-..|.+.++.+... +..+-|.+++ .| +..+|+|.|..||..||..|.
T Consensus 63 P~GiinLadase~~~-~g~~kF~f~~----~G--~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 63 PSGIINLADASEPEK-DGSNKFHFKI----KG--HKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred CcceEehhhcccccc-CCCceEEEEe----CC--ceeeeecCCHHHhccHHHHhh
Confidence 334444444443322 2346676654 23 236899999999999998765
No 101
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.05 E-value=33 Score=29.53 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=27.2
Q ss_pred CceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 184 KYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 184 ~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
...|.+... +...+..|.|++++||+.|+.++.+.|
T Consensus 75 P~IF~I~~~----~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 75 PKIFQILYA----NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred CeEEEEEeC----CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 467777663 223557899999999999999877665
No 102
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.63 E-value=40 Score=28.36 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=55.2
Q ss_pred ceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCC--CccEEEEEEcCChhhhhh
Q psy5772 137 AKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHE--QKTVEIVLSCDTESESSL 214 (654)
Q Consensus 137 ~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~l~a~s~~~k~~ 214 (654)
+++.++|=+++|-.-|...... -+.-+|+..+.+.+++++-.+ .++.|.+...+..+ .-..+..|.|.|.++-..
T Consensus 20 K~~WFVLt~~~L~wykd~eeKE--~kyilpLdnLk~Rdve~gf~s-k~~~FeLfnpd~rnvykd~k~lel~~~~~e~vds 96 (110)
T cd01256 20 KDYWFVLTSESLSWYKDDEEKE--KKYMLPLDGLKLRDIEGGFMS-RNHKFALFYPDGRNVYKDYKQLELGCETLEEVDS 96 (110)
T ss_pred cceEEEEecceeeeeccccccc--ccceeeccccEEEeecccccC-CCcEEEEEcCcccccccchheeeecCCCHHHHHH
Confidence 4556888888988888653321 123357999999999987654 34888876433221 112458899999999999
Q ss_pred hhcccC
Q psy5772 215 NVSNKS 220 (654)
Q Consensus 215 W~~~~~ 220 (654)
|....-
T Consensus 97 wkasfl 102 (110)
T cd01256 97 WKASFL 102 (110)
T ss_pred HHHHHH
Confidence 987543
No 103
>KOG2059|consensus
Probab=64.46 E-value=26 Score=39.63 Aligned_cols=81 Identities=10% Similarity=0.004 Sum_probs=56.2
Q ss_pred cccceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhh
Q psy5772 134 HFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESS 213 (654)
Q Consensus 134 ~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~ 213 (654)
..|+.+|+=|=+..|.+.|.++... ...+|++.|...+-.+......+|.|.+...+. +..+||.+..|-.
T Consensus 584 ~~FKKryf~LT~~~Ls~~Ksp~~q~---~~~Ipl~nI~avEklee~sF~~knv~qVV~~dr------tly~Q~~n~vEan 654 (800)
T KOG2059|consen 584 KNFKKRYFRLTTEELSYAKSPGKQP---IYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDR------TLYVQAKNCVEAN 654 (800)
T ss_pred hhhhheEEEeccceeEEecCCccCc---ccceeHHHHHHHHHhhhhccCCCceEEEEecCc------ceeEecCCchHHH
Confidence 4578889999999999999665421 233455555443322223344578888876552 5789999999999
Q ss_pred hhhcccCccc
Q psy5772 214 LNVSNKSDKI 223 (654)
Q Consensus 214 ~W~~~~~~~~ 223 (654)
.|++++.++-
T Consensus 655 dWldaL~kvs 664 (800)
T KOG2059|consen 655 DWLDALRKVS 664 (800)
T ss_pred HHHHHHHHHh
Confidence 9999887555
No 104
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=63.72 E-value=20 Score=31.26 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=25.5
Q ss_pred CceEEEEEeecCC-CccEEEEEEcCChhhhhhhhcccC
Q psy5772 184 KYLILLTILENHE-QKTVEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 184 ~~~f~~~~~~~~~-~~~~~~~l~a~s~~~k~~W~~~~~ 220 (654)
...|.++...-.. .......|.|+|+.||++|+..++
T Consensus 79 P~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~ 116 (122)
T cd01243 79 PCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALS 116 (122)
T ss_pred CeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHH
Confidence 4677776544322 223456789999999999998654
No 105
>KOG1729|consensus
Probab=60.12 E-value=2.6 Score=42.99 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=31.2
Q ss_pred ccccccCCceEEEEeeeEEEeccccchhhcccccccccceEEEEecCCeeeccC
Q psy5772 601 CLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVAG 654 (654)
Q Consensus 601 ~~~l~~~~R~Li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit~ 654 (654)
..++..++|.|+.+|.++... +|..+ ++++|||+|++++++
T Consensus 36 ~~~~~~~grv~~~q~~~~k~~--------rk~~q-----~r~~~l~~D~~~~~~ 76 (288)
T KOG1729|consen 36 GHPCRECGRVLCRQGTLVKRC--------RKKLQ-----SRSFFLFNDILVYGN 76 (288)
T ss_pred cCcccccchhhhhhhhhHHHH--------hcccc-----cccccccccchhhcc
Confidence 557778999999999995443 23222 789999999998864
No 106
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=58.74 E-value=31 Score=28.70 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=40.5
Q ss_pred EEEecCCCceEEEeeccccceEEEEccCCCCCCCCceEEEEEeecCCCccEEEEEEcCChhhhhhhhccc
Q psy5772 150 ITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNK 219 (654)
Q Consensus 150 ~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~ 219 (654)
..|.-.+|.|.....-++.+|..-+..+... ....|.++|.. .|-..|.|.+||..++..+
T Consensus 24 k~K~~~~g~f~i~ktW~L~eL~~I~~~~~~~--~~~~F~l~~~k-------~y~W~a~s~~Ek~~Fi~~L 84 (91)
T PF15277_consen 24 KVKQNDNGSFQIGKTWDLDELKAIDGINPDK--DTPEFDLTFDK-------PYYWEASSAKEKNTFIRSL 84 (91)
T ss_dssp EEEE-CCS-EEEEEEEEGGG--EEEE-SSS----TTEEEEESSS-------EEEEEESSHHHHHHHHHHH
T ss_pred EEEecCCCcEEEeeEEehhhceeeeeecCCC--CCcCEEEEECC-------CcEEEeCCHHHHHHHHHHH
Confidence 3344566789998888888887776544332 24688888733 4899999999999988754
No 107
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=57.60 E-value=45 Score=36.96 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=45.6
Q ss_pred cceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCC---CCCCCCceEEEEEeecCCCccEEEEEEcCChhhh
Q psy5772 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDS---VPPTNKYLILLTILENHEQKTVEIVLSCDTESES 212 (654)
Q Consensus 136 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k 212 (654)
++.+++.+.++.+.++.........- .....+...++++..- ..+...+.|.+.+.. | ..+.+.|.|++++
T Consensus 392 wk~ry~~l~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~---~--~~~~~~~~~~~~~ 465 (478)
T PTZ00267 392 WKKRYFYIGNGQLRISLSENPENDGV-APKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNN---G--QKIIAYAKTAEDR 465 (478)
T ss_pred hhhheEEecCCceEEEeccccccCCC-CCccccHHHhcccccccHHhcCCCCceEEEEecC---C--cEEEEecCChHHH
Confidence 35567899988888885422211000 0011111122222111 012235777774322 2 2478999999999
Q ss_pred hhhhcccCccc
Q psy5772 213 SLNVSNKSDKI 223 (654)
Q Consensus 213 ~~W~~~~~~~~ 223 (654)
..||..|++++
T Consensus 466 ~~W~~~~~~~~ 476 (478)
T PTZ00267 466 DQWISKFQRAC 476 (478)
T ss_pred HHHHHHHHHHh
Confidence 99999998776
No 108
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=48.39 E-value=20 Score=28.90 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=22.9
Q ss_pred EEEeeeEEEeccccchhhcccccccccceEEEEecCCeeecc
Q psy5772 612 VRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLHPVA 653 (654)
Q Consensus 612 i~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~lfLFnD~Llit 653 (654)
+++|.|.... .+ ....|..+|++|+++.|.++
T Consensus 2 ~~~G~l~~~~-~~---------~~~~~~~~~~~L~~~~l~~~ 33 (102)
T smart00233 2 IKEGWLYKKS-GG---------KKKSWKKRYFVLFNSTLLYY 33 (102)
T ss_pred ceeEEEEEeC-CC---------ccCCceEEEEEEECCEEEEE
Confidence 5788888774 10 11345689999999999875
No 109
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=48.10 E-value=38 Score=38.82 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=66.0
Q ss_pred EEeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCCceEEEeeccc-cceEEEEccCCCCCCCCceE
Q psy5772 109 LVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTR-AMMQMAAIEDSVPPTNKYLI 187 (654)
Q Consensus 109 li~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~-~~l~v~~~~~~~~~~~~~~f 187 (654)
..++|.+..+...+-+. .....+|++|=...|=+.|++..+.-.-.....+ ..+.|++..-... ..+..|
T Consensus 4 ~~~eGW~y~~g~~kig~--------~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~-~g~~~y 74 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGR--------SYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH-HGHMVY 74 (719)
T ss_pred ceEeeEEEEEccccccc--------ccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEE-cCceEE
Confidence 46788888775432211 1124677999999999999865544222222222 3555665432211 123456
Q ss_pred EEEEeecCCCccEEEEEEcCChhhhhhhhcccCcccc
Q psy5772 188 LLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKIL 224 (654)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~ 224 (654)
.+.+-+.. .......+-|.+.+|-.+|+++++.++.
T Consensus 75 vl~~Yn~~-~~~~~~~~~a~~~eea~~W~~a~~~a~~ 110 (719)
T PLN00188 75 VLSVYNKK-EKYHRITMAAFNIQEALIWKEKIESVID 110 (719)
T ss_pred EEEEecCC-CccccEEEecCCHHHHHHHHHHHHHHHh
Confidence 65555554 4456689999999999999998888775
No 110
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=38.92 E-value=11 Score=27.22 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=21.1
Q ss_pred cCCCcCccCcchhhhhhccccccccccCCCCccchh
Q psy5772 248 SGTYPVQENPKIVAVFLLEGIHQIKHLPPQGSAYWD 283 (654)
Q Consensus 248 ~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~ 283 (654)
..+|.+...++++ +..+ +++.+.....++||
T Consensus 2 l~~y~~~~~dELs----~~~G-d~i~v~~~~~~~W~ 32 (49)
T PF14604_consen 2 LYDYEAQDPDELS----FKKG-DVITVLEKSDDGWW 32 (49)
T ss_dssp SSCBCSSSTTB-E----B-TT-EEEEEEEESSTSEE
T ss_pred CccCCCCCcCEee----EcCC-CEEEEEEeCCCCEE
Confidence 3578899999999 8777 77766666566666
No 111
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.16 E-value=71 Score=27.63 Aligned_cols=38 Identities=5% Similarity=0.025 Sum_probs=27.1
Q ss_pred CCceEEEEEeecCCC-ccEEEEEEcCChhhhhhhhcccC
Q psy5772 183 NKYLILLTILENHEQ-KTVEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 183 ~~~~f~~~~~~~~~~-~~~~~~l~a~s~~~k~~W~~~~~ 220 (654)
..+.|.+........ ...-..|.|.+++.+..||+.|+
T Consensus 67 Td~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~R 105 (114)
T cd01259 67 TDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIR 105 (114)
T ss_pred CCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHH
Confidence 357787765444432 33446789999999999999876
No 112
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=34.14 E-value=13 Score=26.58 Aligned_cols=32 Identities=6% Similarity=0.115 Sum_probs=22.9
Q ss_pred ccCCCcCccCcchhhhhhccccccccccCCCCccchh
Q psy5772 247 DSGTYPVQENPKIVAVFLLEGIHQIKHLPPQGSAYWD 283 (654)
Q Consensus 247 ~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~ 283 (654)
...+|.+..+++++ +.++ ++..+.....++||
T Consensus 2 Alydf~~~~~~eLs----~~~G-d~i~v~~~~~~~Ww 33 (48)
T PF00018_consen 2 ALYDFDAEDPDELS----FKKG-DIIEVLEKSDDGWW 33 (48)
T ss_dssp ESSCBETSSTTBSE----B-TT-EEEEEEEESSSSEE
T ss_pred CCeeeCCCCCCEEe----EECC-CEEEEEEecCCCEE
Confidence 35678999999999 8877 77777666555555
No 113
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=31.47 E-value=74 Score=27.44 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=13.8
Q ss_pred eEEEEecCCeeeccC
Q psy5772 640 KLNLFLFTDLHPVAG 654 (654)
Q Consensus 640 ~~~lfLFnD~Llit~ 654 (654)
++|++||...|++.|
T Consensus 30 eRyLvLFp~~LlilS 44 (111)
T cd01225 30 ERYLVLFPNVLLMLS 44 (111)
T ss_pred eeEEEEcCceEEEEE
Confidence 899999999999875
No 114
>KOG4226|consensus
Probab=31.18 E-value=21 Score=35.44 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=34.1
Q ss_pred cccCCCcCccCcchhhhhhccccccccccCCCCccchhhccccCCCCCCCCcccC
Q psy5772 246 VDSGTYPVQENPKIVAVFLLEGIHQIKHLPPQGSAYWDNLWDSGNSSTPGATSNS 300 (654)
Q Consensus 246 ~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~~~~~~~~s~~ 300 (654)
...-.|.+...||++ +-+| +-..+..++++||| .|.++..-.|.++
T Consensus 111 vVKf~Y~a~~eDELs----LtKG-trv~vmEKssDGWW----rG~~ng~VGWFPS 156 (379)
T KOG4226|consen 111 VVKFNYVAEREDELS----LTKG-TRVTVMEKSSDGWW----RGSYNGQVGWFPS 156 (379)
T ss_pred EEEEeeccccccccc----cccC-cEEEEEEeccCcce----ecccCCeeccccc
Confidence 345568999999999 7777 66778889999999 3666555555543
No 115
>PF15601 Imm42: Immunity protein 42
Probab=29.95 E-value=96 Score=27.83 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=29.9
Q ss_pred cccccccccCcHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHH
Q psy5772 25 LMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69 (654)
Q Consensus 25 Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~ 69 (654)
.+.|-.-=+|||+|+++|.. +.-.++++.+|++.|++|-+.
T Consensus 28 ~lE~~~wGskfP~Lm~~LY~----g~L~~~~~~~A~~eL~~I~~~ 68 (134)
T PF15601_consen 28 RLENEGWGSKFPLLMNELYR----GYLRYEELEKALKELEEIRKE 68 (134)
T ss_pred HhhccCCCCcchHHHHHHHc----CCCCHHHHHHHHHHHHHHHHH
Confidence 34455556799999999954 345678888888888776554
No 116
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=28.15 E-value=8.6e+02 Score=26.95 Aligned_cols=172 Identities=15% Similarity=0.158 Sum_probs=90.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHccCCCCCcCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHHHhcCcc
Q psy5772 386 ERKLQEAKF----ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSIL 461 (654)
Q Consensus 386 ~~krq~~i~----ELi~TE~~Yv~~L~~l~~~f~~~~~l~~~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~~~~~~~ 461 (654)
-.+|...|. .|-..|.+=.+.|+.+...|.. .|.+-..+.+.++..++. .++..+++.+|..=.
T Consensus 81 ~~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~--~L~~ia~~~~~dv~rli~--~ea~~iN~~ll~Nrr-------- 148 (473)
T PF14643_consen 81 SQKRKQWIKELDEDLEELEKERADKLKKVLRKYVE--ILEKIAHLLPPDVERLIE--KEAMEINQALLGNRR-------- 148 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCcHHHHHHHH--HHHHHHHHHHHHhHH--------
Confidence 345555554 4577888889999999999998 777777777777777765 445555655554321
Q ss_pred cccHHHHHHHhcccchhhhHHHhhhcHHHHHHHHHHHHhcChhHHHHHHHHhc----CCCCCCcCchhhhcccchhhccH
Q psy5772 462 LTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELES----DPVCQSLSLHSFLMLPMQRVTRL 537 (654)
Q Consensus 462 ~~~i~~if~~~~~~~~~~~Y~~Y~~n~~~~~~~l~~~~~~~~~f~~~l~~~~~----~~~~~~l~L~s~Li~PvQRi~rY 537 (654)
.+++.|.+... .-...-..+..........++.++. +..+..|...+.+ +|.....-+..+.-.=..--.+-
T Consensus 149 --a~a~L~~~L~~-~~~~~e~~~~~~w~~~~~~Wr~l~~-~~~i~~f~~~~~s~~~~~P~~~~~~~e~~~~~Q~~l~~~r 224 (473)
T PF14643_consen 149 --AYADLFANLME-AELQRELSYRRRWQDRVDDWRALRH-ERAIQEFREFMASEEFQNPPERKQLLEQMRKEQVDLHEKR 224 (473)
T ss_pred --HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhCccccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 24455555544 3444444555555555666666555 4444444443332 22211111222221111111122
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy5772 538 PLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNE 574 (654)
Q Consensus 538 ~lLL~~llk~t~~~~~d~~~l~~al~~i~~l~~~~n~ 574 (654)
.-+|+.+....|+...... +.+....+..+...++.
T Consensus 225 ~~~L~~l~~l~Pp~~t~~~-v~eW~~~l~~l~~~~d~ 260 (473)
T PF14643_consen 225 LELLQSLCDLLPPNLTKEK-VEEWYASLNALNEQIDE 260 (473)
T ss_pred HHHHHHhhcCCCCCCCHHH-HHHHHHHHHHHHHHHHH
Confidence 2356666666665433322 44555555444444433
No 117
>KOG0521|consensus
Probab=28.02 E-value=1.3e+02 Score=35.52 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=27.6
Q ss_pred CCceEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCcccc
Q psy5772 183 NKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKIL 224 (654)
Q Consensus 183 ~~~~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~~ 224 (654)
...+|.+.. ....|+|||.++.+...||+.|++.+.
T Consensus 334 rr~CF~iiS------~tks~~lQAes~~d~~~Wi~~i~nsi~ 369 (785)
T KOG0521|consen 334 RRFCFEIIS------PTKSYLLQAESEKDCQDWISALQNSIL 369 (785)
T ss_pred ceeeEEEec------CCcceEEecCchhHHHHHHHHHHHHHH
Confidence 356677553 234599999999999999998877763
No 118
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.67 E-value=71 Score=27.32 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=12.7
Q ss_pred CceEEEEeeeEEEe
Q psy5772 608 SRWLVRSGSMNFVN 621 (654)
Q Consensus 608 ~R~Li~~G~l~~~~ 621 (654)
+|.||++|.|+.+.
T Consensus 1 gR~li~eG~L~K~~ 14 (104)
T cd01218 1 GRVLVGEGVLTKMC 14 (104)
T ss_pred CCEEEecCcEEEee
Confidence 58999999999995
No 119
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.50 E-value=3e+02 Score=21.87 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5772 36 PLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLL 85 (654)
Q Consensus 36 ~LLL~~llk~t~~~~~d~~~l~~Al~~i~~i~~~vN~~~~~~e~~~~l~~ 85 (654)
.+||..|++.+ +.|.+|+..|...+..||..-...|....+++
T Consensus 10 ~~LLsRIi~Nv-------ekLNEsv~~lN~~l~eIn~~N~~le~~~qm~e 52 (72)
T PF08650_consen 10 SNLLSRIIGNV-------EKLNESVAELNQELEEINRANKNLEIVAQMWE 52 (72)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 46888999877 67889999999999999988888777777665
No 120
>KOG4225|consensus
Probab=21.81 E-value=40 Score=36.01 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=30.1
Q ss_pred cccCCCcCccCcchhhhhhccccccccccCCCCccchhh
Q psy5772 246 VDSGTYPVQENPKIVAVFLLEGIHQIKHLPPQGSAYWDN 284 (654)
Q Consensus 246 ~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~ 284 (654)
...-+|.+++.|++. +..| ||+.|..+|.+||..
T Consensus 436 rAly~Y~pqnedeLE----l~eg-Dii~VmeKcddgWfv 469 (489)
T KOG4225|consen 436 RALYSYRPQNEDELE----LREG-DIIDVMEKCDDGWFV 469 (489)
T ss_pred eeccccCCCCchhhe----eccC-CEEeeeecccCccee
Confidence 566779999999998 8877 999999999999994
No 121
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=21.55 E-value=68 Score=27.52 Aligned_cols=91 Identities=21% Similarity=0.203 Sum_probs=51.6
Q ss_pred EeecceEEEecCccchhhhhcccccccceEEEEecCCeEEEEEecCCCceEEEeeccccceEEEEccCCC----CCCCCc
Q psy5772 110 VRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSV----PPTNKY 185 (654)
Q Consensus 110 i~~G~l~~~~~~~~~~~~~k~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~l~v~~~~~~~----~~~~~~ 185 (654)
|.+|.+..++.+--.. ++.+|+.||-+=|-+ ....+ . ...+.+.+.++.+-. .-.+.+
T Consensus 4 IvhGyi~KLGGPFls~----------WQ~Ry~~LfPNRLE~-~~~~~-~------~~~eLi~M~~i~~V~~e~~~iK~~~ 65 (116)
T cd01240 4 IVHGYIKKLGGPFLSQ----------WQTRYFKLYPNRLEL-YGESE-A------NKPELITMDQIEDVSVEFQQIKEEN 65 (116)
T ss_pred EEeeehhhhCCHHHHH----------HHHHHheeCcceeee-ccccc-c------cCCcEEEeehhhhcchhheeeccCc
Confidence 5677776654332222 355679999877777 32211 1 112233333332211 112345
Q ss_pred eEEEEEeecCCCccEEEEEEcCChhhhhhhhcccCccc
Q psy5772 186 LILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 186 ~f~~~~~~~~~~~~~~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
++.+.+.. . ..++|.+.++-+=.+|..+++++.
T Consensus 66 CI~ik~k~--~---~k~vlt~~d~i~l~qW~~elr~a~ 98 (116)
T cd01240 66 CILLKIRD--E---KKIVLTNSDEIELKQWKKELRDAH 98 (116)
T ss_pred eEEEEEcC--C---ceEEEecCCcHHHHHHHHHHHHHH
Confidence 66655543 2 239999999999999999888665
No 122
>PF15404 PH_4: Pleckstrin homology domain
Probab=20.81 E-value=51 Score=31.36 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.6
Q ss_pred EEEEEEcCChhhhhhhhcccC
Q psy5772 200 VEIVLSCDTESESSLNVSNKS 220 (654)
Q Consensus 200 ~~~~l~a~s~~~k~~W~~~~~ 220 (654)
.+++|.|.|-.||+.|+-.|.
T Consensus 162 ks~VF~ARSRqERD~WV~~I~ 182 (185)
T PF15404_consen 162 KSMVFMARSRQERDLWVLAIN 182 (185)
T ss_pred cEEEEEeccHHHHHHHHHHHH
Confidence 458999999999999998775
No 123
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=20.21 E-value=1.8e+02 Score=25.16 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEcCChhhhhhhhcccCccc
Q psy5772 201 EIVLSCDTESESSLNVSNKSDKI 223 (654)
Q Consensus 201 ~~~l~a~s~~~k~~W~~~~~~~~ 223 (654)
...|.|.+..+++.|+..|+..+
T Consensus 81 ~vEfec~~~~~~k~W~~gI~~mL 103 (110)
T PF08458_consen 81 VVEFECDSQREYKRWVQGIQHML 103 (110)
T ss_pred EEEEEeCChhhHHHHHHHHHHHH
Confidence 37889999999999999988766
No 124
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=20.12 E-value=1.1e+02 Score=25.58 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHccCCCCC-----cCCCCChhhhhhhcCCHHHHHHHHHHHHHHHHHH
Q psy5772 402 SYFKSLTVLEKHFIASPLLD-----DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQC 455 (654)
Q Consensus 402 ~Yv~~L~~l~~~f~~~~~l~-----~~~~l~~~~~~~lF~ni~~I~~~h~~fl~~Le~~ 455 (654)
.|++.|+.-+++|.. .++ ..++.+...+..||-++.. .|-.+|.-+.+.
T Consensus 2 ef~~~l~~~v~if~n--Rmksns~RGrsIanDsaVqsLF~~lt~---mH~~LL~~i~~~ 55 (96)
T PF12210_consen 2 EFCNTLRSSVEIFVN--RMKSNSSRGRSIANDSAVQSLFQTLTA---MHPQLLKYIQEQ 55 (96)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHTT--GGG-HHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHhHhcCCCCcccHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 578888888888887 665 5677777888999876655 566666555443
Done!