RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5772
(654 letters)
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 233 bits (597), Expect = 4e-71
Identities = 56/289 (19%), Positives = 117/289 (40%), Gaps = 25/289 (8%)
Query: 372 EVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR 431
+ V+ L E QE EL +EAS+ ++L VL+ F + N++ + +
Sbjct: 5 HTVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREEL 62
Query: 432 KHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKS----FNIYIKYCSN 487
LF N+ + + A+++ ++ ++ I +++ + + ++CS
Sbjct: 63 ARLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSY 122
Query: 488 QFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTR 547
Q +K+ + +F + E ES P C+ L L ++ MQR+T+ PLL ++I+
Sbjct: 123 QSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKH 182
Query: 548 LRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVI-- 605
SE+E +I+ NE ++ E + + + + + E P+
Sbjct: 183 TEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAE 242
Query: 606 -----SSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
++R ++ G + + K L++ L DL
Sbjct: 243 FKSLDLTTRKMIHEGPLTWRISKDKTL------------DLHVLLLEDL 279
Score = 129 bits (325), Expect = 7e-33
Identities = 41/219 (18%), Positives = 73/219 (33%), Gaps = 29/219 (13%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
ES P C+ L L ++ MQR+T+ PLL ++I+ SE+E +I+
Sbjct: 147 AESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKY 206
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVI-------SSSRWLVRSGSMNFVNVDS 122
NE ++ E + + + + + E P+ ++R ++ G + +
Sbjct: 207 VNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISKD 266
Query: 123 KMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSN-GSYSVIDYCTRAMMQMAAIEDSVPP 181
K L++ L DLLV+ +K+ V
Sbjct: 267 KTL------------DLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLK 314
Query: 182 TNKYLI---------LLTILENHEQKTVEIVLSCDTESE 211
N LI I + L T S+
Sbjct: 315 LNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSD 353
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 225 bits (576), Expect = 2e-67
Identities = 57/298 (19%), Positives = 119/298 (39%), Gaps = 28/298 (9%)
Query: 363 NRSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDD 422
+ W + V+ L E QE EL +EAS+ ++L VL+ F +
Sbjct: 41 DAQNWQ---HTVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKK 95
Query: 423 VNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKS----F 478
N++ + + LF N+ + + A+++ ++ ++ I +++ +
Sbjct: 96 ENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQ 155
Query: 479 NIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLP 538
+ ++CS Q +K+ + +F + E ES P C+ L L ++ MQR+T+ P
Sbjct: 156 QVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYP 215
Query: 539 LLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKE 598
LL ++I+ SE+E +I+ NE ++ E + + + + + E
Sbjct: 216 LLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALE 275
Query: 599 VKCLPVI-------SSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
P+ ++R ++ G + + K L++ L DL
Sbjct: 276 RASNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTL------------DLHVLLLEDL 321
Score = 124 bits (313), Expect = 6e-31
Identities = 41/219 (18%), Positives = 73/219 (33%), Gaps = 29/219 (13%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
ES P C+ L L ++ MQR+T+ PLL ++I+ SE+E +I+
Sbjct: 189 AESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKY 248
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVI-------SSSRWLVRSGSMNFVNVDS 122
NE ++ E + + + + + E P+ ++R ++ G + +
Sbjct: 249 VNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISKD 308
Query: 123 KMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSN-GSYSVIDYCTRAMMQMAAIEDSVPP 181
K L++ L DLLV+ +K+ V
Sbjct: 309 KTL------------DLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLK 356
Query: 182 TNKYLI---------LLTILENHEQKTVEIVLSCDTESE 211
N LI I + L T S+
Sbjct: 357 LNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSD 395
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 214 bits (547), Expect = 9e-64
Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 27/290 (9%)
Query: 372 EVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR 431
E++ L +L + K QE EL+ +EA++ + L VL F + + +
Sbjct: 11 ELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEEL 68
Query: 432 KHLFGNVTAVRKCSERLLAALEQCWQDS-ILLTNICEIVYQHVTNKS----FNIYIKYCS 486
+++F ++ + + L L + Q+S L+ I +++ I ++CS
Sbjct: 69 QNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCS 128
Query: 487 NQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILT 546
Q LK+ + +P+F + E ES P C+ L L + MQR+T+ PLL +I
Sbjct: 129 RQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIG- 187
Query: 547 RLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVIS 606
+ +E E +I+H N+ R ME + R + S P++S
Sbjct: 188 QNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLS 247
Query: 607 -------SSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
+ + LV G + + K ++++ L DL
Sbjct: 248 EFKNLDITKKKLVHEGPLTWRVTKDKAV------------EVHVLLLDDL 285
Score = 120 bits (302), Expect = 1e-29
Identities = 42/220 (19%), Positives = 73/220 (33%), Gaps = 33/220 (15%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
ES P C+ L L + MQR+T+ PLL +I + +E E +I+H
Sbjct: 154 AESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIG-QNTEEPTEREKVELAAECCREILHH 212
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVIS-------SSRWLVRSGSMNFVNVDS 122
N+ R ME + R + S P++S + + LV G + +
Sbjct: 213 VNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKD 272
Query: 123 KMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVP-- 180
K ++++ L DLL++ +++ T
Sbjct: 273 KAV------------EVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR 320
Query: 181 ---------PTNKYLILLTILENHEQKTVEIVLSCDTESE 211
T+ + + E + E L T SE
Sbjct: 321 LTSAMTREVATDHKAFYVLFTWDQEAQIYE--LVAQTVSE 358
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 212 bits (541), Expect = 9e-63
Identities = 58/291 (19%), Positives = 118/291 (40%), Gaps = 28/291 (9%)
Query: 372 EVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR 431
+++ VL L E K QE EL +E ++ ++L VL++ F + ILS ++
Sbjct: 8 QLVSREVLLGLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQR--VSREGILSPSEL 65
Query: 432 KHLFGNVTAVRKCSERLLAALEQCWQ--DSILLTNICEIVYQHVTNKS----FNIYIKYC 485
+ +F N+ + + L ++ + ++ ++ I E + + + +C
Sbjct: 66 RKIFSNLEDILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFC 125
Query: 486 SNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAIL 545
SNQ +KS ++ + +F + + ES+P+C+ L L + MQR+T+ PLL D I
Sbjct: 126 SNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIA 185
Query: 546 TRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVI 605
+ +E E +I++ N+ ++ E + R + S ++ P +
Sbjct: 186 -KYTEWPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNV 244
Query: 606 SS-------SRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
R ++ G + + K L L D+
Sbjct: 245 EELRNLDLTKRKMIHEGPLVWKVNRDKTI------------DLYTLLLEDI 283
Score = 116 bits (292), Expect = 2e-28
Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 33/220 (15%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
ES+P+C+ L L + MQR+T+ PLL D I + +E E +I++
Sbjct: 152 AESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIA-KYTEWPTEREKVKKAADHCRQILNF 210
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISS-------SRWLVRSGSMNFVNVDS 122
N+ ++ E + R + S ++ P + R ++ G + +
Sbjct: 211 VNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLTKRKMIHEGPLVWKVNRD 270
Query: 123 KMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCT-----------RAMMQ 171
K L L D+LV+ +K+ + +++
Sbjct: 271 KTI------------DLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIK 318
Query: 172 MAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESE 211
++ + T+ + + + ++ + E L T SE
Sbjct: 319 LSTVLVRQVATDNKALFVISMSDNGAQIYE--LVAQTVSE 356
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 216 bits (550), Expect = 2e-62
Identities = 76/381 (19%), Positives = 139/381 (36%), Gaps = 39/381 (10%)
Query: 287 DSGNSSTPGATSNSDSMSDPGSDLHLRFIDEPLYQFYNACI------AELQFNEGSVENG 340
+ TPG + + S+ P + E + +EG+
Sbjct: 79 GAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETES 138
Query: 341 YEEIGSSPMRTSMLEIIAPPHMNRSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELITSE 400
E S LE+ W E++ L +L + K QE EL+ +E
Sbjct: 139 PEPGDEGEPGRSGLELEPE---EPPGWR---ELVPPDTLHSLPKSQVKRQEVISELLVTE 192
Query: 401 ASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS- 459
A++ + L VL F + + + +++F ++ + + L L + Q+S
Sbjct: 193 AAHVRMLRVLHDLFFQP--MAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESG 250
Query: 460 ILLTNICEIVYQHVTNKS----FNIYIKYCSNQFHIDRTLKSLRETNPKFIEALTELESD 515
L+ I +++ I ++CS Q LK+ + +P+F + E ES
Sbjct: 251 YLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESR 310
Query: 516 PVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEE 575
P C+ L L + MQR+T+ PLL +I + +E E +I+H N+
Sbjct: 311 PRCRRLQLKDMIPTEMQRLTKYPLLLQSIG-QNTEEPTEREKVELAAECCREILHHVNQA 369
Query: 576 ARKMERYYEMLLLSRLIKFSLKEVKCLPVIS-------SSRWLVRSGSMNFVNVDSKMTF 628
R ME + R + S P++S + + LV G + + K
Sbjct: 370 VRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAV- 428
Query: 629 ARKLNKTHFYAKLNLFLFTDL 649
++++ L DL
Sbjct: 429 -----------EVHVLLLDDL 438
Score = 120 bits (302), Expect = 6e-29
Identities = 42/220 (19%), Positives = 73/220 (33%), Gaps = 33/220 (15%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
ES P C+ L L + MQR+T+ PLL +I + +E E +I+H
Sbjct: 307 AESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIG-QNTEEPTEREKVELAAECCREILHH 365
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVIS-------SSRWLVRSGSMNFVNVDS 122
N+ R ME + R + S P++S + + LV G + +
Sbjct: 366 VNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKD 425
Query: 123 KMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVP-- 180
K ++++ L DLL++ +++ T
Sbjct: 426 KAV------------EVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR 473
Query: 181 ---------PTNKYLILLTILENHEQKTVEIVLSCDTESE 211
T+ + + E + E L T SE
Sbjct: 474 LTSAMTREVATDHKAFYVLFTWDQEAQIYE--LVAQTVSE 511
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 207 bits (529), Expect = 7e-60
Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 26/277 (9%)
Query: 380 DTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVT 439
DT+ ERK Q ELI +E Y L ++ + F + + L++ + +F N
Sbjct: 19 DTMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKR--MAESGFLTEGEMALIFVNWK 76
Query: 440 AVRKCSERLLAALEQC---WQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLK 496
+ + +LL AL + + + I +I+ + YI++CS Q + L+
Sbjct: 77 ELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAEL--SHMQAYIRFCSCQLNGAALLQ 134
Query: 497 SLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYE 556
+ + F E L +L SDP C+ + L SFL+ PMQR+TR PLL +IL +H+++
Sbjct: 135 QKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHS 194
Query: 557 TCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKE----VKCLPVISSSRWLV 612
+ L ++ + NE R+ E + + ++ L R L+
Sbjct: 195 SLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLGPRKLL 254
Query: 613 RSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
SG + + ++ FLF D
Sbjct: 255 HSGKLYKTKSNKELHG---------------FLFNDF 276
Score = 113 bits (283), Expect = 1e-26
Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
L SDP C+ + L SFL+ PMQR+TR PLL +IL +H+++ + L ++ +
Sbjct: 150 LASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQ 209
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKE----VKCLPVISSSRWLVRSGSMNFVNVDSKMT 125
NE R+ E + + ++ L R L+ SG + + ++
Sbjct: 210 VNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLGPRKLLHSGKLYKTKSNKELH 269
Query: 126 FARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPP---- 181
FLF D L++T + S + A + P
Sbjct: 270 G---------------FLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLN 314
Query: 182 -------TNKYLILLTILENHEQKTVEIVLSCDTESE 211
T+ +H + L D +E
Sbjct: 315 EVLVKLPTDPSSDEPVFHISHIDRVYT--LRTDNINE 349
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 201 bits (514), Expect = 2e-59
Identities = 65/274 (23%), Positives = 113/274 (41%), Gaps = 26/274 (9%)
Query: 376 SGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLF 435
V L A E K QEA FEL E + L + +K + P+L +I+++ + +F
Sbjct: 7 GCVNQVLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYH-DPMLKL-SIMTEQELNQIF 64
Query: 436 GNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTL 495
G + ++ E LL+ L + ++ I+ + + Y YCSNQ L
Sbjct: 65 GTLDSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGWL--PCLSSYDSYCSNQVAAKALL 122
Query: 496 KSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEY 555
++ + + + L P + L L +FL +P R+ + PLL IL ++ +
Sbjct: 123 DHKKQ-DHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQ 181
Query: 556 ETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSG 615
+ + + IV E N + + E Y L L + + +I SSR L G
Sbjct: 182 QHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEG-----QKDSLIDSSRVLCCHG 236
Query: 616 SMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
+ K N+ KL++FLF ++
Sbjct: 237 EL-------------KNNRGV---KLHVFLFQEV 254
Score = 117 bits (294), Expect = 7e-29
Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 40/219 (18%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
P + L L +FL +P R+ + PLL IL ++ + + + + IV E
Sbjct: 138 CLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAE 197
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARK 129
N + + E Y L L + + +I SSR L G + K
Sbjct: 198 INTKTGESECRYYKERLLYLEEG-----QKDSLIDSSRVLCCHGEL-------------K 239
Query: 130 LNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAM-MQMAAIED----------- 177
N+ KL++FLF ++LVIT+ ++ + + ++ +ED
Sbjct: 240 NNRGV---KLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGS 296
Query: 178 -----SVPPTNKYLILLTILENHEQKTVEIVLSCDTESE 211
S K ++ + +T L +
Sbjct: 297 LRGAFSNNERVKNFFRVSFKNGSQSQTHS--LQANDTFN 333
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 196 bits (499), Expect = 5e-58
Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 12/278 (4%)
Query: 319 LYQFYNACIAELQFNEGSVENGYEEIGSSPMRTSMLEIIAPPHMN-----RSLWCQLPEV 373
+Y + EL F++G + N + + + + N +
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQWC 67
Query: 374 IDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKH 433
D +LD L ERK Q ELI +E +Y L ++ + F PL + +L++ +
Sbjct: 68 SDLHLLDMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQK-PLTES-ELLTEKEVAM 125
Query: 434 LFGNVTAVRKCSERLLAALEQC---WQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFH 490
+F N + C+ +LL AL + + + I +I+ + YI++CS Q +
Sbjct: 126 IFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQL--PHMQPYIRFCSCQLN 183
Query: 491 IDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRP 550
++ + P F E + L DP C+ + L SF++ PMQRVTR PL+ IL
Sbjct: 184 GAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPE 243
Query: 551 NHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLL 588
NH ++ L ++ + NE R+ E + +
Sbjct: 244 NHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWI 281
Score = 84.4 bits (209), Expect = 3e-18
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
L DP C+ + L SF++ PMQRVTR PL+ IL NH ++ L ++ +
Sbjct: 205 LAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQ 264
Query: 70 CNEEARKMERYYEMLLL 86
NE R+ E + +
Sbjct: 265 VNEGVREKENSDRLEWI 281
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 157 bits (399), Expect = 4e-42
Identities = 68/380 (17%), Positives = 132/380 (34%), Gaps = 44/380 (11%)
Query: 295 GATSNSDSMSDPGSDLHLRFIDEP-----------LYQFYNACIAELQFNEGSVENGYEE 343
GA S+S S PG I+E L+ EL F G V +
Sbjct: 1 GAMSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDA 60
Query: 344 -------------IGSSPMRTSMLEIIAPPHMNRSLWCQLPEVIDSGVLDTLDAGERKLQ 390
G P L + + + G + + ++
Sbjct: 61 TNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQMRT 120
Query: 391 EAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLA 450
E++++E Y K L + + ++ ++ S+ + +FGN+ + +C + +
Sbjct: 121 NVINEILSTERDYIKHLRDICEGYVR-QCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVK 179
Query: 451 ALEQCWQDSIL-LTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEAL 509
ALEQ + L+ + +H F IY +YC+N + L L + K++
Sbjct: 180 ALEQRFNRERPHLSELGACFLEHQ--ADFQIYSEYCNNHPNACVELSRLTK-LSKYVYFF 236
Query: 510 TELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIV 569
+SL FL+ P+Q++ + PL +L P H +++ L + +
Sbjct: 237 EACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVA 296
Query: 570 HECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFA 629
NE R++E ++ S+++ + ++ S L+ SG +
Sbjct: 297 QLINERKRRLENIDKIAQWQS----SIEDWEGEDLLVRSSELIYSGEL-------TRVTQ 345
Query: 630 RKLNKTHFYAKLNLFLFTDL 649
+ FLF
Sbjct: 346 PQAKSQQRM----FFLFDHQ 361
Score = 93.5 bits (232), Expect = 2e-20
Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 23/206 (11%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 70
+SL FL+ P+Q++ + PL +L P H +++ L + +
Sbjct: 240 RLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLI 299
Query: 71 NEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKL 130
NE R++E ++ S+++ + ++ S L+ SG + +
Sbjct: 300 NERKRRLENIDKIAQWQS----SIEDWEGEDLLVRSSELIYSGEL-------TRVTQPQA 348
Query: 131 NKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLIL-- 188
FLF L+ KK V+ Y R M + D ++ L +
Sbjct: 349 KSQQRM----FFLFDHQLIYCKKDLLRR-DVLYYKGRLDMDGLEVVDLEDGKDRDLHVSI 403
Query: 189 ---LTILENHEQKTVEIVLSCDTESE 211
+ + +L +
Sbjct: 404 KNAFRLHRGATGDS--HLLCTRKPEQ 427
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 153 bits (389), Expect = 6e-41
Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 28/274 (10%)
Query: 383 DAGERKLQEAKFELITSEASYFKSLTVLEKHFIA-------SPLLDDVNILSKNDRKHLF 435
G+ + EL++SE +Y + L L F + + L++ + +
Sbjct: 17 QGGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGL 76
Query: 436 GNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTL 495
+ A+ + +L LE+ + + ++ + F+ + + L
Sbjct: 77 SELPAIHDLHQGILEELEERLSNWESQQKVADVFLARE--QGFDHHATHILQFDRYLGLL 134
Query: 496 KSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEY 555
+P+ A+ E E S + L+ +QR+ + +L L L P+ +EY
Sbjct: 135 SENCLHSPRLAAAVREFEQSVQGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEY 194
Query: 556 ETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSG 615
+ L+ ++K+ N+ + E +++ + ++ ++ R ++ G
Sbjct: 195 DNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRG------QGDLLQPGREFLKEG 248
Query: 616 SMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
++ V ++ +LFL D+
Sbjct: 249 TLMKVTGKNRR-------------PRHLFLMNDV 269
Score = 101 bits (254), Expect = 3e-23
Identities = 31/202 (15%), Positives = 74/202 (36%), Gaps = 28/202 (13%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
E S + L+ +QR+ + +L L L P+ +EY+ L+ ++K+
Sbjct: 151 FEQSVQGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDR 210
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARK 129
N+ + E +++ + ++ ++ R ++ G++ V ++
Sbjct: 211 ANDSMEQGENLQKLVHIEHSVRG------QGDLLQPGREFLKEGTLMKVTGKNRR----- 259
Query: 130 LNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILL 189
+LFL D+L+ T + +G Y + + V Y + +
Sbjct: 260 --------PRHLFLMNDVLLYTYPQKDGKYR---LKNTLAVANMKVSRPVMEKVPYALKI 308
Query: 190 TILENHEQKTVEIVLSCDTESE 211
+ ++LS + +E
Sbjct: 309 E----TSESC--LMLSASSCAE 324
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 145 bits (367), Expect = 3e-38
Identities = 48/280 (17%), Positives = 102/280 (36%), Gaps = 20/280 (7%)
Query: 371 PEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKND 430
P + L ++ E++++E Y K L + + ++ ++ S
Sbjct: 24 PNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLK-QCRKRRDMFSDEQ 82
Query: 431 RKHLFGNVTAVRKCSERLLAALEQCWQDSILLT-NICEIVYQHVTNKSFNIYIKYCSNQF 489
K +FGN+ + + + LE+ + + I +H F IY +YC+N
Sbjct: 83 LKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQ--DGFWIYSEYCNNHL 140
Query: 490 HIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLR 549
L L + + ++ +++ FL+ P+Q++ + PL +L
Sbjct: 141 DACMELSKLMK-DSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTA 199
Query: 550 PNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSR 609
+HS+Y LA + + + NE R++E ++ S+ + + ++ S
Sbjct: 200 QDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQA----SVLDWEGDDILDRSS 255
Query: 610 WLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
L+ +G M + FLF
Sbjct: 256 ELIYTGEM-------AWIYQPYGRNQQRV----FFLFDHQ 284
Score = 89.9 bits (223), Expect = 2e-19
Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 19/204 (9%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 70
+++ FL+ P+Q++ + PL +L +HS+Y LA + + +
Sbjct: 163 RLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQI 222
Query: 71 NEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKL 130
NE R++E ++ S+ + + ++ S L+ +G M +
Sbjct: 223 NERKRRLENIDKIAQWQA----SVLDWEGDDILDRSSELIYTGEM-------AWIYQPYG 271
Query: 131 NKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILL- 189
FLF +V+ KK + Y R M + D + +
Sbjct: 272 RNQQRV----FFLFDHQMVLCKKDLIRRDILY-YKGRIDMDKYEVIDIEDGRDDDFNVSM 326
Query: 190 --TILENHEQKTVEIVLSCDTESE 211
++++ + E
Sbjct: 327 KNAFKLHNKETEEVHLFFAKKLEE 350
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 132 bits (333), Expect = 1e-33
Identities = 47/264 (17%), Positives = 88/264 (33%), Gaps = 25/264 (9%)
Query: 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 445
K E+ +E Y +L +++HF+ PL L D + +F N+ +
Sbjct: 23 YDKRCCCLREIQQTEEKYTDTLGSIQQHFMK-PLQ---RFLKPQDMETIFVNIEELFSVH 78
Query: 446 ERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKF 505
L L+ T + ++ ++ + F +Y +YCS + L +
Sbjct: 79 THFLKELKDALAGP-GATTLYQVFIKYK--ERFLVYGRYCSQVESASKHLDQVATAREDV 135
Query: 506 IEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATL 565
L E +L LM+PMQRV + LL ++ + +E E L +
Sbjct: 136 QMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRLALDAM 194
Query: 566 NKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSK 625
+ NE R E ++ I+ +++ G + +V+ +
Sbjct: 195 RDLAQCVNEVKRDNETLRQITNFQLSIE------NLDQSLANYGRPKIDGELKITSVERR 248
Query: 626 MTFARKLNKTHFYAKLNLFLFTDL 649
R FL
Sbjct: 249 SKTDRY-----------AFLLDKA 261
Score = 85.3 bits (211), Expect = 6e-18
Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 21/202 (10%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
+L LM+PMQRV + LL ++ + +E E L + +
Sbjct: 142 CSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRLALDAMRDLAQC 200
Query: 70 CNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARK 129
NE R E ++ I+ +++ G + +V+ + R
Sbjct: 201 VNEVKRDNETLRQITNFQLSIE------NLDQSLANYGRPKIDGELKITSVERRSKTDRY 254
Query: 130 LNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILL 189
FL L+I K++ + SY + Q+ K+ +
Sbjct: 255 -----------AFLLDKALLICKRRGD-SYDLKASVNLHSFQVRDDSSGERDNKKWSHMF 302
Query: 190 TILENHEQKTVEIVLSCDTESE 211
++E+ + L T
Sbjct: 303 LLIEDQGAQG--YELFFKTREL 322
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 135 bits (340), Expect = 1e-33
Identities = 46/264 (17%), Positives = 87/264 (32%), Gaps = 25/264 (9%)
Query: 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 445
K E+ +E Y +L +++HF+ PL L D + +F N+ + +
Sbjct: 195 YDKRCCCLREIQQTEEKYTDTLGSIQQHFLK-PLQ---RFLKPQDIEIIFINIEDLLRVH 250
Query: 446 ERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKF 505
L +++ N+ ++ ++ + F +Y +YCS + L +
Sbjct: 251 THFLKEMKEALGTPGA-ANLYQVFIKYK--ERFLVYGRYCSQVESASKHLDRVAAAREDV 307
Query: 506 IEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATL 565
L E +L LM+PMQRV + LL ++ E E L +
Sbjct: 308 QMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QEAMEKENLRLALDAM 366
Query: 566 NKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSK 625
+ NE R E ++ I+ ++ G + +V+ +
Sbjct: 367 RDLAQCVNEVKRDNETLRQITNFQLSIE------NLDQSLAHYGRPKIDGELKITSVERR 420
Query: 626 MTFARKLNKTHFYAKLNLFLFTDL 649
R FL
Sbjct: 421 SKMDRY-----------AFLLDKA 433
Score = 86.6 bits (214), Expect = 6e-18
Identities = 34/201 (16%), Positives = 63/201 (31%), Gaps = 21/201 (10%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 70
+L LM+PMQRV + LL ++ E E L + +
Sbjct: 315 SQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QEAMEKENLRLALDAMRDLAQCV 373
Query: 71 NEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKL 130
NE R E ++ I+ ++ G + +V+ + R
Sbjct: 374 NEVKRDNETLRQITNFQLSIE------NLDQSLAHYGRPKIDGELKITSVERRSKMDRY- 426
Query: 131 NKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLT 190
FL L+I K++ + SY + D+ Q+ K+ +
Sbjct: 427 ----------AFLLDKALLICKRRGD-SYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFL 475
Query: 191 ILENHEQKTVEIVLSCDTESE 211
++E+ + L T
Sbjct: 476 LIEDQGAQG--YELFFKTREL 494
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 130 bits (327), Expect = 4e-33
Identities = 53/275 (19%), Positives = 105/275 (38%), Gaps = 24/275 (8%)
Query: 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 445
KL++ EL+ +E +Y K L L + ++ L L++++ LFGN+T + +
Sbjct: 9 ADKLRKVICELLETERTYVKDLNCLMERYLKP--LQKETFLTQDELDVLFGNLTEMVEFQ 66
Query: 446 ERLLAALEQCWQDSILLTNICEIVYQHVTNKS-----------FNIYIKYCSNQFHIDRT 494
L LE + L + ++ S F +Y +C++ + +
Sbjct: 67 VEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKV 126
Query: 495 LKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSE 554
L + + F L S +L S+L+ P+QRV + PLL + E
Sbjct: 127 LVKAKT-DTAFKAFLDAQNP-RQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEE 184
Query: 555 YETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRS 614
+ + T+NK+ NE + E + + +LI E K + +S L+ +
Sbjct: 185 HYHLDVAIKTMNKVASHINEMQKIHEEFGAV--FDQLIAEQTGEKKEVADLSMGDLLLHT 242
Query: 615 GSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
+ ++ + + + F+F
Sbjct: 243 S---VIWLNPPASLGKWKKEPELA----AFVFKTA 270
Score = 81.6 bits (201), Expect = 9e-17
Identities = 35/224 (15%), Positives = 76/224 (33%), Gaps = 28/224 (12%)
Query: 7 WFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKI 66
+ ++ S +L S+L+ P+QRV + PLL + E+ + T+NK+
Sbjct: 139 FLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKV 198
Query: 67 VHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTF 126
NE + E + + +LI E K + +S L+ + + ++ +
Sbjct: 199 ASHINEMQKIHEEFGAV--FDQLIAEQTGEKKEVADLSMGDLLLHTS---VIWLNPPASL 253
Query: 127 ARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAM----------------- 169
+ + F+F +V+ K + + R
Sbjct: 254 GKWKKEPELA----AFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTE 309
Query: 170 -MQMAAIEDSVPPTNKYLILLTILENHEQKTVE-IVLSCDTESE 211
+Q+ A+ + N ++ + E + L C +
Sbjct: 310 ALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPES 353
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 120 bits (303), Expect = 3e-31
Identities = 37/208 (17%), Positives = 79/208 (37%), Gaps = 7/208 (3%)
Query: 379 LDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNV 438
DT + ++ +E Y K L + ++ PL LS + +L GN+
Sbjct: 4 FDTTAINKSYYNVVLQNILETENEYSKELQTVLSTYLR-PLQTS-EKLSSANISYLMGNL 61
Query: 439 TAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSL 498
+ + L+ +LE+C + + + +Y+ YC+N + L
Sbjct: 62 EEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNL-MPQMKTLYLTYCANH---PSAVNVL 117
Query: 499 RETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETC 558
E + + E + + L L + L P R+ + P L + + H++ +
Sbjct: 118 TEHSEELGEFMETKGA-SSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDI 176
Query: 559 HTTLATLNKIVHECNEEARKMERYYEML 586
++A + +C E ++ E ++L
Sbjct: 177 QKSMAAFKNLSAQCQEVRKRKELELQIL 204
Score = 55.0 bits (133), Expect = 1e-08
Identities = 13/71 (18%), Positives = 29/71 (40%)
Query: 14 PVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEE 73
L L + L P R+ + P L + + H++ + ++A + +C E
Sbjct: 134 SSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEV 193
Query: 74 ARKMERYYEML 84
++ E ++L
Sbjct: 194 RKRKELELQIL 204
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 111 bits (278), Expect = 9e-27
Identities = 26/201 (12%), Positives = 61/201 (30%), Gaps = 7/201 (3%)
Query: 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 445
E+ + + Y + L ++ K F P + + + S ND +++F + + + S
Sbjct: 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFR-EPFVSNSKLFSANDVENIFSRIVDIHELS 59
Query: 446 ERLLAALEQC---WQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETN 502
+LL +E + + +F+ Y Y + + L + +
Sbjct: 60 VKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 503 --PKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHT 560
+ + E L L+ P+ L + + + E
Sbjct: 120 KPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLE-EKSEDQEDKECLKQ 178
Query: 561 TLATLNKIVHECNEEARKMER 581
+ L + + K
Sbjct: 179 AITALLNVQSGMEKICSKSLA 199
Score = 62.7 bits (152), Expect = 1e-10
Identities = 20/211 (9%), Positives = 54/211 (25%), Gaps = 16/211 (7%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 70
E L L+ P+ L + + + E + L +
Sbjct: 132 EGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLE-EKSEDQEDKECLKQAITALLNVQSGM 190
Query: 71 NEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKL 130
+ K + + + K L + + +++ +
Sbjct: 191 EKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEI---QKNIDGWEGKDIGQCCNEF 247
Query: 131 NKTHFYAKLN------LFLFTDLLVITKKKSN----GSYSVIDYCTRAMMQMAAIEDSVP 180
++ +FLF L++ K S +Y + M ++ +
Sbjct: 248 IMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDK 307
Query: 181 PTNKYLILLTILENHEQKTVEIVLSCDTESE 211
+ ++ + ++ S + E
Sbjct: 308 DDTNEYKHAFEIILKDENS--VIFSAKSAEE 336
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 96.1 bits (239), Expect = 1e-21
Identities = 43/264 (16%), Positives = 97/264 (36%), Gaps = 36/264 (13%)
Query: 387 RKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSE 446
+ EL+ +E Y L + + ++A+ V + + +FGN+ + +
Sbjct: 11 ERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHR 70
Query: 447 R-LLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKF 505
L L++C +D + ++ +H + ++Y+ YC N+ ++ + E +
Sbjct: 71 DYFLQELQRCLKDP---DWLAQLFIKHE--RRLHMYVVYCQNK---PKSEHVVSEFGDSY 122
Query: 506 IEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATL 565
E L + + L L+ L+ P+QR+ + LL L + + +
Sbjct: 123 FEELRQ----QLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVM 178
Query: 566 NKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSK 625
+ CN +M+ L RL F K +++ L+ + ++
Sbjct: 179 CFVPKRCN----------DMMTLGRLRGFEGK-------LTAQGKLLGQDTFWVTEPEAG 221
Query: 626 MTFARKLNKTHFYAKLNLFLFTDL 649
+ + + FLF +
Sbjct: 222 GLLSSRGRERRV------FLFEQI 239
Score = 67.6 bits (165), Expect = 3e-12
Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 29/214 (13%)
Query: 2 TLGPLWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLA 61
G +F + L L+ L+ P+QR+ + LL L + +
Sbjct: 117 EFGDSYFEELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVE 176
Query: 62 TLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVD 121
+ + CN +M+ L RL F K +++ L+ + +
Sbjct: 177 VMCFVPKRCN----------DMMTLGRLRGFEGK-------LTAQGKLLGQDTFWVTEPE 219
Query: 122 SKMTFARKLNKTHFYAKLNLFLFTDLLVITKKK--SNGSYSVIDYCTRAMMQMAA--IED 177
+ + + + FLF +++ ++ + Y + ++++ +E
Sbjct: 220 AGGLLSSRGRERRV------FLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEG 273
Query: 178 SVPPTNKYLILLTILENHEQKTVEIVLSCDTESE 211
++ L E VL +
Sbjct: 274 NLQGDPCRFAL--TSRGPEGGIQRYVLQAADPAI 305
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 86.8 bits (215), Expect = 8e-19
Identities = 36/200 (18%), Positives = 75/200 (37%), Gaps = 20/200 (10%)
Query: 385 GERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILS---KNDRKHLFGNVTAV 441
R+ + ELI +E +Y + L ++ + V + N +FGN+ +
Sbjct: 6 SARRKEFIMAELIQTEKAYVRDLRECMDTYLW-EMTSGVEEIPPGIVNKELIIFGNMQEI 64
Query: 442 RK-CSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRE 500
+ + L LE+ Q ++ F +Y+ YC N+ + + + E
Sbjct: 65 YEFHNNIFLKELEKYEQLP---EDVGHCFVTWA--DKFQMYVTYCKNK---PDSTQLILE 116
Query: 501 TNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHT 560
+ + + + + S+ S+L+ P+QR+T+ LL +LT E +
Sbjct: 117 HAGSYFDEIQQRHGL----ANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDG-- 170
Query: 561 TLATLNKIVHECNEEARKME 580
L + + N+
Sbjct: 171 -LEVMLSVPKRANDAMHLSM 189
Score = 54.4 bits (131), Expect = 4e-08
Identities = 34/196 (17%), Positives = 60/196 (30%), Gaps = 30/196 (15%)
Query: 16 CQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEAR 75
+ S+ S+L+ P+QR+T+ LL +LT E + L + + N+
Sbjct: 130 GLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDG---LEVMLSVPKRANDAMH 186
Query: 76 KMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHF 135
I S L+ S V T RK + H
Sbjct: 187 LSMLE-----------------GFDENIESQGELILQES---FQVWDPKTLIRKGRERHL 226
Query: 136 YAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENH 195
FLF LV +K+ + S Y ++ + + + + +
Sbjct: 227 ------FLFEMSLVFSKEVKDSSGRSK-YLYKSKLFTSELGVTEHVEGDPCKFALWVGRT 279
Query: 196 EQKTVEIVLSCDTESE 211
+IVL +
Sbjct: 280 PTSDNKIVLKASSIEN 295
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 82.7 bits (204), Expect = 3e-17
Identities = 42/245 (17%), Positives = 93/245 (37%), Gaps = 26/245 (10%)
Query: 380 DTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIA----SPLLDDVNILSKNDRKHLF 435
+ ++ + EL+ +E +Y + L + + + A + ++ +N + LF
Sbjct: 3 EEEESLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILF 62
Query: 436 GNVTAVRKC-SERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRT 494
GN+ + + L LE C + + + F IY KYC N+ +
Sbjct: 63 GNMEEIYHFHNRIFLRELESCIDCP---ELVGRCFLER--MEEFQIYEKYCQNKPRSESL 117
Query: 495 LKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSE 554
+ + F + + + LSL S+L+ P+QR+T+ LL +L + +
Sbjct: 118 WRQCSDC--PFFQECQKK----LDHKLSLDSYLLKPVQRITKYQLLLKEML-KYSKHCEG 170
Query: 555 YETCHTTLATLNKIVHECNEEAR---------KMERYYEMLLLSRLIKFSLKEVKCLPVI 605
E L+++ I+ N+ + ++L+ ++ + V
Sbjct: 171 AEDLQEALSSILGILKAVNDSMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVK 230
Query: 606 SSSRW 610
+R+
Sbjct: 231 ELARF 235
Score = 53.8 bits (129), Expect = 8e-08
Identities = 37/210 (17%), Positives = 69/210 (32%), Gaps = 28/210 (13%)
Query: 7 WFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKI 66
+F + LSL S+L+ P+QR+T+ LL +L + + E L+++ I
Sbjct: 126 FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEML-KYSKHCEGAEDLQEALSSILGI 184
Query: 67 VHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTF 126
+ N+ + L L K L+ GS + K
Sbjct: 185 LKAVNDSMHLIAITGYDGNLGDLGK-----------------LLMQGSFSVWTDHKKGHT 227
Query: 127 ARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVID---YCTRAMMQMAA--IEDSVPP 181
K + +LFL ++ KK+ Y + + M A I ++V
Sbjct: 228 KVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKG 287
Query: 182 TNKYLILLTILENHEQKTVEIVLSCDTESE 211
K + + + ++ T
Sbjct: 288 DTKKFEIW-----YNAREEVYIIQAPTPEI 312
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.0 bits (186), Expect = 2e-14
Identities = 82/524 (15%), Positives = 138/524 (26%), Gaps = 162/524 (30%)
Query: 191 ILENHEQKTVEIVLSCDTESESSLNVSNKS--DKILNSPSWYS------DCSLFDPTANV 242
IL E V+ C + ++ +K D I+ S S L V
Sbjct: 21 ILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 243 PAFVDSGTYPVQENPKIVAVFLLEGIHQIKHLPPQG----SAYWDNLWDSGNSSTPGATS 298
FV+ ++ N K FL+ I + P D L++ S
Sbjct: 80 QKFVEEV---LRINYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 299 NSDSMSDPGSDLHLRFIDEPLYQFYNACIAELQFNEGSVENGYEEIGSSPM-----RTSM 353
R +P + A + EL+ + + +G G + + +
Sbjct: 133 --------------RL--QPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 354 LEIIAPPHMNRSLW-----CQLPE-----------VIDSGVLDTLDAGER---KLQEAKF 394
++ + W C PE ID D ++ +
Sbjct: 176 VQCKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 395 EL--ITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAAL 452
EL + Y L VL +V + + A
Sbjct: 233 ELRRLLKSKPYENCLLVL----------LNV--------------------QNAKAWNAF 262
Query: 453 E-QCWQDSILLTNICEIVYQHVT-NKSFNIYIKYCSNQFHIDRTLKSLRETNPKFIEALT 510
C ILLT T K + L + T+
Sbjct: 263 NLSC---KILLT----------TRFKQ-------------VTDFLSAATTTHISLDHHSM 296
Query: 511 ELESDPVCQSLSL------HSFLMLPMQRVTRLPLLFDAILTRLR--PNHSEYETCHTTL 562
L D + SL LP + +T P I +R + H
Sbjct: 297 TLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNC 352
Query: 563 ATLNKIVHEC--NEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSR----W--LVRS 614
L I+ E + + ++ L + F I + W +++S
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSV-----FP-PSAH----IPTILLSLIWFDVIKS 402
Query: 615 GSMNFVNVDSKMTFARKLNKTHFYAKLNLFL--------FTDLH 650
M VN K + K K + +++L LH
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Score = 59.1 bits (142), Expect = 4e-09
Identities = 89/663 (13%), Positives = 179/663 (26%), Gaps = 258/663 (38%)
Query: 134 HFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSV---PPTNKYLILLT 190
+ Y + L +F D V + V D ++++ I+ + + L L
Sbjct: 16 YQYKDI-LSVFEDAFV----DNFDCKDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 191 ILENHEQKTVEIVLSCDTESESSLN-----VSNKSDKILNSPS------------WYSDC 233
L + +++ V+ + E L + + PS Y+D
Sbjct: 70 TLLSKQEEMVQKFV------EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 234 SLFDPTANVPAF-----VDSGTYPVQENPKIVAVFLLEGI---------------HQIKH 273
+F NV + ++ ++ ++G+ ++++
Sbjct: 124 QVFAKY-NVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVALDVCLSYKVQC 178
Query: 274 LPPQGSAYWDNLWDSGNSSTPGA----------------TSNSDSMSDPGSDLH------ 311
+W NL N ++P TS SD S+ +H
Sbjct: 179 KMDFK-IFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 312 LRFIDEPLYQ-----------------FYNAC--------------IAELQFNEGSVEN- 339
R + Y+ F +C ++ S+++
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 340 --GYEE----------------------IGSSPMRTSMLEIIAPPHMNRSLW-------- 367
+ ++P R S++ + W
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNC 352
Query: 368 CQLPEVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILS 427
+L +I+S L+ L+ E + F L+V +I
Sbjct: 353 DKLTTIIESS-LNVLEPAEYR-------------KMFDRLSVFP---------PSAHI-- 387
Query: 428 KNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSN 487
LL+ + W D I + V NK
Sbjct: 388 -----------------PTILLSLI---WFDVI------KSDVMVVVNKLHK-------- 413
Query: 488 QFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTR 547
SL +E P ++S+ S + ++ L +I+
Sbjct: 414 --------YSL-------------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 548 LRPNHSEYETCHTTLATLNK-----IVHECNEEARKMERYYEMLLLSRL-IKFSLKEVKC 601
+++ L++ I H + +E M L + + F E K
Sbjct: 453 YNI-PKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLDFRFLEQK- 506
Query: 602 LPVI-SSSRWLVRSGSMNFVN---------VDSKMTFARKLNK-THFYAKLNLFL----F 646
+ S+ W +N + D+ + R +N F K+ L +
Sbjct: 507 --IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 647 TDL 649
TDL
Sbjct: 565 TDL 567
Score = 46.4 bits (109), Expect = 3e-05
Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 36/176 (20%)
Query: 2 TLGPLWFPLESDPVCQSLSL------HSFLMLPMQRVTRLPLLFDAILTRLR--PNHSEY 53
+L L D + SL LP + +T P I +R +
Sbjct: 290 SLDHHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 54 ETCHTTLATLNKIVHEC--NEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSR---- 107
H L I+ E + + ++ L + F I +
Sbjct: 347 -WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FP-PSAH----IPTILLSLI 395
Query: 108 W--LVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSV 161
W +++S M VN K + K K + +++L +L K K Y++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--EL----KVKLENEYAL 445
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 73.3 bits (179), Expect = 1e-13
Identities = 38/273 (13%), Positives = 82/273 (30%), Gaps = 10/273 (3%)
Query: 385 GERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKC 444
GE+ + + Y + L ++ K F P + + + S ND +++F + + +
Sbjct: 197 GEQTYYDLVKAFMAEIRQYIRELNLIIKVFRE-PFVSNSKLFSANDVENIFSRIVDIHEL 255
Query: 445 SERLLAALEQC---WQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRE- 500
S +LL +E + + +F+ Y Y + + L +
Sbjct: 256 SVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQL 315
Query: 501 TNPKFIEALTE-LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCH 559
+ P L E L L+ P+ L L + + E
Sbjct: 316 SKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLK-QLEEKSEDQEDKECLK 374
Query: 560 TTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNF 619
+ L + + K + + + K L + +
Sbjct: 375 QAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEG 434
Query: 620 VNV-DSKMTFARK--LNKTHFYAKLNLFLFTDL 649
++ F + L + + ++FLF L
Sbjct: 435 KDIGQCCNEFIMEGTLTRVGAKHERHIFLFDGL 467
Score = 40.6 bits (94), Expect = 0.002
Identities = 26/236 (11%), Positives = 61/236 (25%), Gaps = 10/236 (4%)
Query: 6 LWFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNK 65
L E L L+ P+ L L + + E + L
Sbjct: 324 LQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLK-QLEEKSEDQEDKECLKQAITALLN 382
Query: 66 IVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNV-DSKM 124
+ + K + + + K L + + ++
Sbjct: 383 VQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCN 442
Query: 125 TFARK--LNKTHFYAKLNLFLFTDLLVITKK----KSNGSYSVIDYCTRAMMQMAAIEDS 178
F + L + + ++FLF L++ K S +Y + M ++ +
Sbjct: 443 EFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQIN 502
Query: 179 VPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKILNSPSWYSDCS 234
+ ++ +V + S + E + ++ S
Sbjct: 503 DKDDTNEYKHAFEIILKDENSV--IFSAKSAEEKNNWMAALISLQYRSTLERMLDV 556
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 4e-08
Identities = 91/493 (18%), Positives = 147/493 (29%), Gaps = 188/493 (38%)
Query: 265 LEGIHQIKHLPPQGSAYWDNLWDSGNSSTPGATSNSDSMSDPGSDLHL--RFI------- 315
LE H + +P L + N P T + +P + L +F+
Sbjct: 16 LE--HVL-LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 316 -DEPLYQFYNACIAELQFNEGSVENGYEEIGSSPMRTSMLEIIAPPHMNRSLWCQLPEVI 374
+ QF + L E EN Y + + +I H +L +L +
Sbjct: 73 EPSKVGQFDQ--VLNLCLTE--FENCY-------LEGN--DI----H---ALAAKLLQEN 112
Query: 375 DSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHF---IASPLLDDVNILSKNDR 431
D+ ++ ELI +Y + + ++ F S L V
Sbjct: 113 DTTLV------------KTKELIK---NYITARIMAKRPFDKKSNSALFRAVG----EGN 153
Query: 432 KHLF------GN------------------VTAVRKCSERLLAALEQCWQDSILLTNICE 467
L GN V + K S L+ L + D E
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD-------AE 206
Query: 468 IVYQHVTNKSFNI--------------YIKYC--S------NQF-HIDRTLKSLRETNP- 503
V+ NI Y+ S Q H T K L P
Sbjct: 207 KVFTQG----LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL-GFTPG 261
Query: 504 ---KFIEALTELESD-----PVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEY 555
+++ T + ++ S SF + + +T +LF I R
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT---VLF-FIGVR-------- 309
Query: 556 ETCHTTLATLN---KIVHECNEEARKMERYYEMLLLSRLIKFSLKEV--------KCLP- 603
C+ + I+ + E + ML +S L + ++V LP
Sbjct: 310 --CYEAYPNTSLPPSILEDSLENNEGVPSP--MLSISNL---TQEQVQDYVNKTNSHLPA 362
Query: 604 ----VIS---SSRWLVRSG---SMNFVNVD------------SKMTFA-RKLNKTHFYAK 640
IS ++ LV SG S+ +N+ S++ F+ RKL F
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK---FS-- 417
Query: 641 LNLFLFTDLHPVA 653
N FL PVA
Sbjct: 418 -NRFL-----PVA 424
Score = 48.9 bits (116), Expect = 5e-06
Identities = 97/607 (15%), Positives = 168/607 (27%), Gaps = 216/607 (35%)
Query: 8 FPLESDPVCQSLSLHS-FLMLPMQRVTRLPL-LFDAILTRLRPNHSEYETC-------HT 58
F + +P L FL V + FD +L +E+E C H
Sbjct: 48 FAADDEPTTP-AELVGKFLGYVSSLVEPSKVGQFDQVLNLC---LTEFENCYLEGNDIHA 103
Query: 59 TLATLNKIVHECNEEARKMER-YYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNF 117
A L + + +++ + Y ++++ + S+S L R+
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAK---------RPFDKKSNSA-LFRA----- 148
Query: 118 VNVDSKMTFARKLNKTHFYAKLNLF--------LFTDLLVITKKKSNGSYSVIDYCTRAM 169
+ A +F F +L + Y Y
Sbjct: 149 ---------VGE-GNAQLVA---IFGGQGNTDDYFEELRDL--------YQT--Y----- 180
Query: 170 MQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESESSLNVSNKSDKILNSPSW 229
+ D L+ + + L + LN+ W
Sbjct: 181 --HVLVGD----------LIKFSAETLSELIRTTLDAEKVFTQGLNIL----------EW 218
Query: 230 YSDCSLFDPTANVP--AFVDSGTYPVQENPKIVAVFLLEGIHQIKHLPPQGSAYWDNLWD 287
L +P +N P ++ S P+ P I G+ Q+ H Y
Sbjct: 219 -----LENP-SNTPDKDYLLS--IPIS-CPLI-------GVIQLAH-------YVVTAKL 255
Query: 288 SG------NSSTPGATSNSD--------SMSDPGSDLH---LRFIDEPLY-------QFY 323
G S GAT +S + +D + I L+ + Y
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAY 314
Query: 324 NACIAELQFNEGSVENGYEEIGSSPM-------RTSMLEIIAPPHMNRSLWCQLPEVIDS 376
E S+EN E SPM + + + + N LP
Sbjct: 315 PNTSLPPSILEDSLENN--EGVPSPMLSISNLTQEQVQDYVN--KTNSH----LPA--GK 364
Query: 377 GVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHF---IASPLLDDVNI-LSKNDRK 432
V +L G + L +++ +SL L A LD I S+ RK
Sbjct: 365 QVEISLVNGAKNL------VVSGPP---QSLYGLNLTLRKAKAPSGLDQSRIPFSE--RK 413
Query: 433 ----HLFGNVTAVRKC---SERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYC 485
+ F V + S L+ A + +D L+ N K I +
Sbjct: 414 LKFSNRFLPVAS----PFHSHLLVPASDLINKD--LVKNNVSF-----NAKDIQIPV--- 459
Query: 486 SNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAIL 545
+ LR + E + + + RLP+ ++
Sbjct: 460 ---YDT-FDGSDLRVLSGSISERIVDC---------------------IIRLPVKWET-T 493
Query: 546 TRLRPNH 552
T+ + H
Sbjct: 494 TQFKATH 500
Score = 38.9 bits (90), Expect = 0.006
Identities = 49/277 (17%), Positives = 83/277 (29%), Gaps = 96/277 (34%)
Query: 191 ILENHEQKTVEIVLSCDTESESSLNVSNKSDKILNSPSWYSDCSLFDPTANV-PA-FVDS 248
I EN+ E + + + + ++ S ++ S+ L T PA +
Sbjct: 1684 IRENYSAMIFE---TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 249 GTYPVQENPKIVAVF-LL--EGIHQIK-----H-LPPQG--SAYWDNLWDSGNSSTPGAT 297
A F L +G+ H L G +A L +
Sbjct: 1741 -----------KAAFEDLKSKGLIPADATFAGHSL---GEYAA----L---------ASL 1773
Query: 298 SNSDSMSDPGSDL-HLR--FI------DEPLYQFYNACIA------ELQFNEGSVENGYE 342
++ S+ ++ R + DE Y IA F++ +++ E
Sbjct: 1774 ADVMSIES-LVEVVFYRGMTMQVAVPRDELGRSNY-GMIAINPGRVAASFSQEALQYVVE 1831
Query: 343 EIGSSPMRT-SMLEII---APPHMNRSLWCQLPEVIDSGVLDTLDAGERKLQEAKFELIT 398
+G RT ++EI+ Q V +G L LD L K + I
Sbjct: 1832 RVGK---RTGWLVEIVNYNVENQ-------QY--VA-AGDLRALDTVTNVLNFIKLQKID 1878
Query: 399 SEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLF 435
L S L++V HLF
Sbjct: 1879 -----IIELQK-------SLSLEEV-------EGHLF 1896
Score = 37.7 bits (87), Expect = 0.013
Identities = 44/299 (14%), Positives = 80/299 (26%), Gaps = 98/299 (32%)
Query: 253 VQENPKIVAV-FLLEGIHQIKHLPPQGSAYWDNLWDSGNSSTPGATSNSDSMSDPGSDLH 311
V NP + + F E +I+ Y ++++ +++ +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIREN------YSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 312 LRFIDEPLYQFYN----------ACIAELQFNEGSVENGYEEIGSSPMRTSMLEIIAPPH 361
R L A +L+ ++G + G H
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLK-SKGLIPADATFAG---------------H 1762
Query: 362 MNRSL--WCQLPEVIDSGVLDTLDA-------GERKLQEA--KFELITSEASYFKSLTVL 410
SL + L + V+ G +Q A + EL S
Sbjct: 1763 ---SLGEYAAL--ASLADVMSIESLVEVVFYRG-MTMQVAVPRDELGRSNYG-------- 1808
Query: 411 EKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVY 470
IA +N R + A++ ER+ + EIV
Sbjct: 1809 ---MIA------INP----GRVAASFSQEALQYVVERVGKRTGW----------LVEIV- 1844
Query: 471 QHVTNKSFNI----YIKYCSNQFH-IDR---TLKSLRETNPKFIEALTELESDPVCQSL 521
N +N+ Y+ + +D L ++ IE L + V L
Sbjct: 1845 ----N--YNVENQQYV--AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 46.2 bits (109), Expect = 7e-06
Identities = 26/170 (15%), Positives = 63/170 (37%), Gaps = 21/170 (12%)
Query: 48 PNHSEYETCHTTLATLNKIVHECNEEARKMERYYEML-LLSRLIKFSLKEVKCLPVISS- 105
N E E +L+ + ++ + + E+ + + ++ S+ +K + +
Sbjct: 5 DNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKE 64
Query: 106 ---SRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNG-SYSV 161
+ LVR GS+ N ++ ++ L TD+LV ++K ++
Sbjct: 65 DLKRKKLVRDGSVFLKNAAGRLK------------EVQAVLLTDILVFLQEKDQKYIFAS 112
Query: 162 IDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESE 211
+D + + I V K L L+++ + + ++ E
Sbjct: 113 LDQKSTVISLKKLIVREVAHEEKGLFLISM---GMTDPEMVEVHASSKEE 159
Score = 35.4 bits (81), Expect = 0.029
Identities = 16/105 (15%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 550 PNHSEYETCHTTLATLNKIVHECNEEARKMERYYEML-LLSRLIKFSLKEVKCLPVISS- 607
N E E +L+ + ++ + + E+ + + ++ S+ +K + +
Sbjct: 5 DNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKE 64
Query: 608 ---SRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDL 649
+ LVR GS+ N ++ ++ L TD+
Sbjct: 65 DLKRKKLVRDGSVFLKNAAGRLK------------EVQAVLLTDI 97
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 36.4 bits (84), Expect = 0.006
Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 20/110 (18%)
Query: 104 SSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSN--GSYSV 161
+ ++LV +G + D +L + H FL D L++ G Y
Sbjct: 3 TPGQYLVYNGDLVEYEADHM----AQLQRVHG------FLMNDCLLVATWLPQRRGMYRY 52
Query: 162 IDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESE 211
+ + ++D+ P + + +L+ + +
Sbjct: 53 NALYPLDRLAVVNVKDNPPMKDMFKLLMF--------PESRIFQAENAKI 94
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 31.1 bits (70), Expect = 0.51
Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 141 LFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTV 200
LF+ +L++ S + + + +A + + + + + +
Sbjct: 49 FLLFSSVLIMLSASPRMS----GFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVER- 103
Query: 201 EIVLSCDTESE 211
IV+ C+ +
Sbjct: 104 -IVVHCNNNQD 113
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 31.3 bits (71), Expect = 0.86
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 104 SSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLN-LFLFTDLLVITKKKSNGSYSV- 161
+++R L+ F + + FAR L+ + L + ++ + + I + +V
Sbjct: 240 NTTRVLLFEKEKGFDSTAQIIEFARDLH--REWNNLYEIAVWKESINIKGNRLFYIQAVH 297
Query: 162 ---------IDYCTRAMMQMAAIEDSVPPTNKYL 186
ID RAM ++A DS+ TNK L
Sbjct: 298 QESDVIPENID-AIRAMFELADKWDSIKKTNKSL 330
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
genomics, structural genomics consortium, SGC; 2.39A
{Homo sapiens}
Length = 140
Score = 29.7 bits (66), Expect = 1.6
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 141 LFLFTDLLVITK----KKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHE 196
+FLF DLLV+TK KK++ +YS + MQ+ E+ I LT
Sbjct: 38 IFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFEN---QYYPNGIRLTSSVPGA 94
Query: 197 QKTVEIVLSCDTESE 211
V I + +
Sbjct: 95 DIKVLINFNAPNPQD 109
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal
transduction, signaling protein; NMR {Caenorhabditis
elegans} SCOP: b.55.1.1
Length = 119
Score = 28.4 bits (63), Expect = 3.1
Identities = 6/36 (16%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 141 LFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIE 176
+FLF + ++ T++ ++ S Y + +++
Sbjct: 30 VFLFRNKIMFTEQDASTSPPS--YTHYSSIRLDKYN 63
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 28.7 bits (63), Expect = 7.2
Identities = 15/87 (17%), Positives = 28/87 (32%)
Query: 431 RKHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFH 490
R+ G V +R + LA ++ + ++ ++ Y
Sbjct: 451 RRFQEGRVDNIRSATPEALAFVQAMTDHKAAMPASEKLQLLQTAMQAQTEYTVMAITGMA 510
Query: 491 IDRTLKSLRETNPKFIEALTELESDPV 517
ID L +LRE + E+ D
Sbjct: 511 IDNHLLALRELARDLCKEPPEMFMDET 537
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 28.4 bits (64), Expect = 8.1
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 72 EEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFAR 128
+E RK+ Y + + + K V S L + ++N + K T R
Sbjct: 80 DEIRKIGDYNKKVF--EAMGLKAKYVY-----GSEFQLDKDYTLNVYRLALKTTLKR 129
Score = 28.4 bits (64), Expect = 8.1
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 574 EEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFAR 630
+E RK+ Y + + + K V S L + ++N + K T R
Sbjct: 80 DEIRKIGDYNKKVF--EAMGLKAKYVY-----GSEFQLDKDYTLNVYRLALKTTLKR 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,634,745
Number of extensions: 558427
Number of successful extensions: 1194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 63
Length of query: 654
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 554
Effective length of database: 3,909,693
Effective search space: 2165969922
Effective search space used: 2165969922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)