RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5772
(654 letters)
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 151 bits (383), Expect = 9e-43
Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 6/225 (2%)
Query: 372 EVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR 431
+ V+ L E QE EL +EAS+ ++L VL+ F + N++ + +
Sbjct: 5 HTVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREEL 62
Query: 432 KHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKS----FNIYIKYCSN 487
LF N+ + + A+++ ++ ++ I +++ + + ++CS
Sbjct: 63 ARLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSY 122
Query: 488 QFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTR 547
Q +K+ + +F + E ES P C+ L L ++ MQR+T+ PLL ++I+
Sbjct: 123 QSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKH 182
Query: 548 LRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLI 592
SE+E +I+ NE ++ E + + + +
Sbjct: 183 TEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRL 227
Score = 67.5 bits (164), Expect = 3e-13
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
ES P C+ L L ++ MQR+T+ PLL ++I+ SE+E +I+
Sbjct: 147 AESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKY 206
Query: 70 CNEEARKMERYYEMLLLSRLI 90
NE ++ E + + + +
Sbjct: 207 VNEAVKQTENRHRLEGYQKRL 227
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 143 bits (361), Expect = 1e-39
Identities = 51/230 (22%), Positives = 102/230 (44%), Gaps = 9/230 (3%)
Query: 372 EVIDSGVLDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR 431
+++ VL L E K QE EL +E ++ ++L VL++ F + ILS ++
Sbjct: 6 QLVSREVLLGLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQR--VSREGILSPSEL 63
Query: 432 KHLFGNVTAVRKCSERLLAALEQC--WQDSILLTNICEIVYQHVTNKS----FNIYIKYC 485
+ +F N+ + + L ++ ++ ++ I E + + + +C
Sbjct: 64 RKIFSNLEDILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFC 123
Query: 486 SNQFHIDRTLKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAIL 545
SNQ +KS ++ + +F + + ES+P+C+ L L + MQR+T+ PLL D I
Sbjct: 124 SNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIA 183
Query: 546 TRLRPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFS 595
+ +E E +I++ N+ ++ E + R + S
Sbjct: 184 -KYTEWPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTS 232
Score = 62.1 bits (150), Expect = 2e-11
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 7 WFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKI 66
ES+P+C+ L L + MQR+T+ PLL D I + +E E +I
Sbjct: 147 VQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIA-KYTEWPTEREKVKKAADHCRQI 205
Query: 67 VHECNEEARKMERYYEMLLLSRLIKFS 93
++ N+ ++ E + R + S
Sbjct: 206 LNFVNQAVKEAENKQRLEDYQRRLDTS 232
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 137 bits (347), Expect = 5e-38
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 7/212 (3%)
Query: 380 DTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVT 439
D L ERK Q ELI +E +Y L ++ + F L + +L++ + +F N
Sbjct: 1 DMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKP--LMESELLTEKEVAMIFVNWK 58
Query: 440 AVRKCSERLLAALEQCWQDSI---LLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLK 496
+ C+ +LL AL + S + I +I+ + + YI++CS Q + ++
Sbjct: 59 ELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH--MQPYIRFCSRQLNGAALIQ 116
Query: 497 SLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYE 556
+ P F E + LE DP C+ + L SF++ PMQRVTR PL+ IL NH ++
Sbjct: 117 QKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHS 176
Query: 557 TCHTTLATLNKIVHECNEEARKMERYYEMLLL 588
L ++ + NE R+ E + +
Sbjct: 177 HLKHALEKAEELCSQVNEGVREKENSDRLEWI 208
Score = 63.6 bits (154), Expect = 4e-12
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 10 LESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHE 69
LE DP C+ + L SF++ PMQRVTR PL+ IL NH ++ L ++ +
Sbjct: 132 LEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQ 191
Query: 70 CNEEARKMERYYEMLLL 86
NE R+ E + +
Sbjct: 192 VNEGVREKENSDRLEWI 208
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 128 bits (323), Expect = 1e-34
Identities = 37/208 (17%), Positives = 77/208 (37%), Gaps = 7/208 (3%)
Query: 379 LDTLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNV 438
DT + ++ +E Y K L + ++ L LS + +L GN+
Sbjct: 4 FDTTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRP--LQTSEKLSSANISYLMGNL 61
Query: 439 TAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSL 498
+ + L+ +LE+C + + + +Y+ YC+N L
Sbjct: 62 EEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQM-KTLYLTYCANHPSAVNVLTEH 120
Query: 499 RETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETC 558
E +F+E + L L + L P R+ + P L + + H++ +
Sbjct: 121 SEELGEFMET----KGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDI 176
Query: 559 HTTLATLNKIVHECNEEARKMERYYEML 586
++A + +C E ++ E ++L
Sbjct: 177 QKSMAAFKNLSAQCQEVRKRKELELQIL 204
Score = 64.3 bits (156), Expect = 3e-12
Identities = 13/69 (18%), Positives = 29/69 (42%)
Query: 16 CQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNEEAR 75
L L + L P R+ + P L + + H++ + ++A + +C E +
Sbjct: 136 PGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRK 195
Query: 76 KMERYYEML 84
+ E ++L
Sbjct: 196 RKELELQIL 204
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 125 bits (314), Expect = 2e-33
Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 7/201 (3%)
Query: 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 445
E+ + + Y + L ++ K F P + + + S ND +++F + + + S
Sbjct: 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFRE-PFVSNSKLFSANDVENIFSRIVDIHELS 59
Query: 446 ERLLAALEQC---WQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHID--RTLKSLRE 500
+LL +E + + +F+ Y Y + S
Sbjct: 60 VKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 501 TNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHT 560
+ + E L L+ P+ L + + + E
Sbjct: 120 KPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLE-EKSEDQEDKECLKQ 178
Query: 561 TLATLNKIVHECNEEARKMER 581
+ L + + K
Sbjct: 179 AITALLNVQSGMEKICSKSLA 199
Score = 52.5 bits (125), Expect = 3e-08
Identities = 8/69 (11%), Positives = 16/69 (23%), Gaps = 1/69 (1%)
Query: 11 ESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHEC 70
E L L+ P+ L + + + E + L +
Sbjct: 132 EGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLE-EKSEDQEDKECLKQAITALLNVQSGM 190
Query: 71 NEEARKMER 79
+ K
Sbjct: 191 EKICSKSLA 199
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 124 bits (311), Expect = 4e-33
Identities = 41/201 (20%), Positives = 84/201 (41%), Gaps = 5/201 (2%)
Query: 381 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 440
L ++ E++++E Y K L + + ++ ++ S K +FGN+
Sbjct: 7 PLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLK-QCRKRRDMFSDEQLKVIFGNIED 65
Query: 441 VRKCSERLLAALEQCWQ-DSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLR 499
+ + + LE+ + D L+ I +H F IY +YC+N L L
Sbjct: 66 IYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDG--FWIYSEYCNNHLDACMELSKLM 123
Query: 500 ETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCH 559
+ + ++ +++ FL+ P+Q++ + PL +L +HS+Y
Sbjct: 124 K-DSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVA 182
Query: 560 TTLATLNKIVHECNEEARKME 580
LA + + + NE R++E
Sbjct: 183 AALAVMRNVTQQINERKRRLE 203
Score = 61.7 bits (149), Expect = 2e-11
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 7 WFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKI 66
+ +++ FL+ P+Q++ + PL +L +HS+Y LA + +
Sbjct: 132 FEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNV 191
Query: 67 VHECNEEARKME 78
+ NE R++E
Sbjct: 192 TQQINERKRRLE 203
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 115 bits (288), Expect = 5e-30
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 15/206 (7%)
Query: 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 445
KL++ EL+ +E +Y K L L + ++ L L++++ LFGN+T + +
Sbjct: 5 ADKLRKVICELLETERTYVKDLNCLMERYLKP--LQKETFLTQDELDVLFGNLTEMVEFQ 62
Query: 446 ERLLAALEQCWQDSILLTNICEIVYQHVTNKS-----------FNIYIKYCSNQFHIDRT 494
L LE + L + ++ S F +Y +C++ + +
Sbjct: 63 VEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKV 122
Query: 495 LKSLRETNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSE 554
L + T+ F +A + ++ S +L S+L+ P+QRV + PLL + E
Sbjct: 123 LVKAK-TDTAF-KAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEE 180
Query: 555 YETCHTTLATLNKIVHECNEEARKME 580
+ + T+NK+ NE + E
Sbjct: 181 HYHLDVAIKTMNKVASHINEMQKIHE 206
Score = 59.0 bits (142), Expect = 1e-10
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 7 WFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKI 66
+ ++ S +L S+L+ P+QRV + PLL + E+ + T+NK+
Sbjct: 135 FLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKV 194
Query: 67 VHECNEEARKME 78
NE + E
Sbjct: 195 ASHINEMQKIHE 206
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 111 bits (279), Expect = 9e-29
Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 8/192 (4%)
Query: 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 445
K E+ +E Y +L +++HF+ PL L D + +F N+ +
Sbjct: 25 YDKRCCCLREIQQTEEKYTDTLGSIQQHFMK-PLQ---RFLKPQDMETIFVNIEELFSVH 80
Query: 446 ERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNPKF 505
L L+ T + ++ ++ F +Y +YCS + L +
Sbjct: 81 THFLKELKDALAGPGA-TTLYQVFIKYKER--FLVYGRYCSQVESASKHLDQVATAREDV 137
Query: 506 IEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATL 565
L E +L LM+PMQRV + LL ++ + + +E E L +
Sbjct: 138 QMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELV-KHTQDATEKENLRLALDAM 196
Query: 566 NKIVHECNEEAR 577
+ NE R
Sbjct: 197 RDLAQCVNEVKR 208
Score = 50.9 bits (121), Expect = 9e-08
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 7 WFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKI 66
+L LM+PMQRV + LL ++ + + +E E L + +
Sbjct: 141 LEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELV-KHTQDATEKENLRLALDAMRDL 199
Query: 67 VHECNEEAR 75
NE R
Sbjct: 200 AQCVNEVKR 208
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 92.1 bits (228), Expect = 4e-22
Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 17/200 (8%)
Query: 386 ERKLQEAKFELITSEASYFKSLTVLEKHFIA----SPLLDDVNILSKNDRKHLFGNVTAV 441
+ EL+ +E +Y + L + + + A + ++ +N + LFGN+ +
Sbjct: 7 AILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEI 66
Query: 442 RKCSERL-LAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRE 500
R+ L LE C + + + F IY KYC N+ + + +
Sbjct: 67 YHFHNRIFLRELESCIDCP---ELVGRCFLERMEE--FQIYEKYCQNKPRSESLWRQCSD 121
Query: 501 TNPKFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHT 560
P F E +L LSL S+L+ P+QR+T+ LL +L + E
Sbjct: 122 -CPFFQECQKKL-----DHKLSLDSYLLKPVQRITKYQLLLKEMLKYS-KHCEGAEDLQE 174
Query: 561 TLATLNKIVHECNEEARKME 580
L+++ I+ N+ +
Sbjct: 175 ALSSILGILKAVNDSMHLIA 194
Score = 50.1 bits (119), Expect = 1e-07
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 7 WFPLESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKI 66
+F + LSL S+L+ P+QR+T+ LL +L + E L+++ I
Sbjct: 124 FFQECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYS-KHCEGAEDLQEALSSILGI 182
Query: 67 VHECNEEARKME 78
+ N+ +
Sbjct: 183 LKAVNDSMHLIA 194
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 87.9 bits (217), Expect = 1e-20
Identities = 35/191 (18%), Positives = 74/191 (38%), Gaps = 18/191 (9%)
Query: 387 RKLQEAKFELITSEASYFKSLTVLEKHFIA--SPLLDDVNILSKNDRKHLFGNVTAVRKC 444
R+ + ELI +E +Y + L ++ + ++++ N +FGN+ + +
Sbjct: 2 RRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEF 61
Query: 445 SERL-LAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETNP 503
+ L LE+ Q ++ F +Y+ YC N+ + + +
Sbjct: 62 HNNIFLKELEKYEQLPE---DVGHCFVTWA--DKFQMYVTYCKNKPDSTQLILEHAGSYF 116
Query: 504 KFIEALTELESDPVCQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLA 563
I+ + S+ S+L+ P+QR+T+ LL +LT E + L
Sbjct: 117 DEIQQ-------RHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDG---LE 166
Query: 564 TLNKIVHECNE 574
+ + N+
Sbjct: 167 VMLSVPKRAND 177
Score = 47.0 bits (111), Expect = 1e-06
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 16 CQSLSLHSFLMLPMQRVTRLPLLFDAILTRLRPNHSEYETCHTTLATLNKIVHECNE 72
+ S+ S+L+ P+QR+T+ LL +LT E + L + + N+
Sbjct: 124 GLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDG---LEVMLSVPKRAND 177
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 40.3 bits (94), Expect = 8e-05
Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 10/103 (9%)
Query: 109 LVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCTRA 168
L+ S V T RK + H FLF LV +K+ + S
Sbjct: 13 LILQESFQ---VWDPKTLIRKGRERHL------FLFEMSLVFSKEVKDSSGRSKYLYKSK 63
Query: 169 MMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESE 211
+ + L + +IVL +
Sbjct: 64 LFTSELGVTEHVEGDPCKFAL-WVGRTPTSDNKIVLKASSIEN 105
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 162
Score = 40.1 bits (93), Expect = 2e-04
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 13/121 (10%)
Query: 93 SLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITK 152
S+ + + ++ S L+ +G M + FLF +V+ K
Sbjct: 11 SVLDWEGDDILDRSSELIYTGEM-------AWIYQPYGRNQQRV----FFLFDHQMVLCK 59
Query: 153 KKSN--GSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTES 210
K ++ IED + ++++ +
Sbjct: 60 KDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLE 119
Query: 211 E 211
E
Sbjct: 120 E 120
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 109
Score = 33.5 bits (76), Expect = 0.018
Identities = 12/105 (11%), Positives = 29/105 (27%), Gaps = 16/105 (15%)
Query: 107 RWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVIDYCT 166
++LV +G + D +++ FL D L++ Y
Sbjct: 2 QYLVYNGDLVEYEADHMAQ----------LQRVHGFLMNDCLLVATWLPQRRGM---YRY 48
Query: 167 RAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTESE 211
A+ + + N + + L + + +
Sbjct: 49 NALYPLDRLAVVNVKDNPPMKDMFKLLMFPE---SRIFQAENAKI 90
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 32.0 bits (72), Expect = 0.075
Identities = 13/126 (10%), Positives = 40/126 (31%), Gaps = 21/126 (16%)
Query: 90 IKFSLKEVKCLPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLV 149
I+ ++ + + + G++ ++ H + ++FLF L++
Sbjct: 8 IQKNIDGWEGKDIGQCCNEFIMEGTL------------TRVGAKH---ERHIFLFDGLMI 52
Query: 150 ITKKKSNG----SYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLS 205
K S +Y + M ++ + + ++ + ++ S
Sbjct: 53 CCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENS--VIFS 110
Query: 206 CDTESE 211
+ E
Sbjct: 111 AKSAEE 116
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 132
Score = 29.7 bits (66), Expect = 0.44
Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 141 LFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTV 200
LF+ +L++ S + + + +A + + + + + +
Sbjct: 49 FLLFSSVLIMLSASPRMSG----FMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVER- 103
Query: 201 EIVLSCDTESE 211
IV+ C+ +
Sbjct: 104 -IVVHCNNNQD 113
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis
[TaxId: 1402]}
Length = 387
Score = 31.0 bits (69), Expect = 0.48
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 227 PSWYSDCSLFDPTAN-VPAFVDSGTYPVQENPKIVAVFLLEGIHQIKHLPPQGSA--YWD 283
S+ D N P + PV + A + + I + + G YW+
Sbjct: 254 TSYTYTAEDGDGHGNTAPKNGQTLNNPV--TVQGQANAVRDVIQAVSDVGEAGIGVFYWE 311
Query: 284 NLWDSGNSSTPGATSNSDSMSDPGS 308
W + + + +
Sbjct: 312 PAWIPVGPAHRLEKNKALWETYGSG 336
>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 119
Score = 28.7 bits (64), Expect = 0.80
Identities = 7/49 (14%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 141 LFLFTDLLVITKKKSNGSYSVIDYCTRAMMQMAA--IEDSVPPTNKYLI 187
+FLF + ++ T++ ++ S Y + +++ I + ++
Sbjct: 30 VFLFRNKIMFTEQDASTSPPS--YTHYSSIRLDKYNIRQHTTDEDTIVL 76
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 142
Score = 28.6 bits (63), Expect = 1.1
Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 28/122 (22%)
Query: 100 LPVISSSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSY 159
+ R + SG + + ++ FLF D L++T+
Sbjct: 16 VTNCLGPRKFLHSGKLYKAKNNKELYG---------------FLFNDFLLLTQITKPLGS 60
Query: 160 SVID----------YCTRAMMQMAAIEDSVPPTNKYLILLTILENHEQKTVEIVLSCDTE 209
S D Y + + + + +P + + L ++
Sbjct: 61 SGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPTDPSGDEPIF---HISHIDRVYTLRAESI 117
Query: 210 SE 211
+E
Sbjct: 118 NE 119
>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 215
Score = 29.1 bits (65), Expect = 1.4
Identities = 15/87 (17%), Positives = 28/87 (32%)
Query: 431 RKHLFGNVTAVRKCSERLLAALEQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFH 490
R+ G V +R + LA ++ + ++ ++ Y
Sbjct: 51 RRFQEGRVDNIRSATPEALAFVQAMTDHKAAMPASEKLQLLQTAMQAQTEYTVMAITGMA 110
Query: 491 IDRTLKSLRETNPKFIEALTELESDPV 517
ID L +LRE + E+ D
Sbjct: 111 IDNHLLALRELARDLCKEPPEMFMDET 137
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange
factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 140
Score = 28.5 bits (63), Expect = 1.5
Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 22/117 (18%)
Query: 105 SSRWLVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNG-SYSVID 163
++R ++ G + + K L++ L DLLV+ +K+
Sbjct: 21 TTRKMIHEGPLTWRISKDKTL------------DLHVLLLEDLLVLLQKQDEKLLLKCHS 68
Query: 164 YCTRAMMQMAAIEDSVPPTNKYLI---------LLTILENHEQKTVEIVLSCDTESE 211
V N LI I + L T S+
Sbjct: 69 KTAVGSSDSKQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSD 125
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 147
Score = 28.1 bits (62), Expect = 2.0
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 109 LVRSGSMNFVNVDSKMTFARKLNKTHFYAKLNLFLFTDLLVITKKKSNGSYSVID---YC 165
L+ GS + K K + +LFL ++ KK+ Y
Sbjct: 13 LLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYS 72
Query: 166 TRAMMQMAAIEDS 178
+ + M A+ +
Sbjct: 73 YKQSLNMTAVGIT 85
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 28.9 bits (64), Expect = 2.0
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 47 RPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSS 106
R +++ CH + +V K + + LL KF + + S
Sbjct: 233 RKPVDKFKDCHLARVPSHAVVA--RSVNGKEDAIWN-LLRQAQEKFGKDKSPKFQLFGSP 289
Query: 107 RW----LVRSGSMNFVNVDSKMTF 126
L + ++ F V ++
Sbjct: 290 SGQKDLLFKDSAIGFSRVPPRIDS 313
Score = 28.9 bits (64), Expect = 2.0
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 549 RPNHSEYETCHTTLATLNKIVHECNEEARKMERYYEMLLLSRLIKFSLKEVKCLPVISSS 608
R +++ CH + +V K + + LL KF + + S
Sbjct: 233 RKPVDKFKDCHLARVPSHAVVA--RSVNGKEDAIWN-LLRQAQEKFGKDKSPKFQLFGSP 289
Query: 609 RW----LVRSGSMNFVNVDSKMTF 628
L + ++ F V ++
Sbjct: 290 SGQKDLLFKDSAIGFSRVPPRIDS 313
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange
factor 12 {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 114
Score = 26.6 bits (58), Expect = 4.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 139 LNLFLFTDLLVITKKKSNGSYSVID 163
L L D+LV+ +K+ +
Sbjct: 19 LYTLLLEDILVLLQKQDDRLVLRCH 43
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 77
Score = 25.2 bits (55), Expect = 7.1
Identities = 3/50 (6%), Positives = 16/50 (32%)
Query: 453 EQCWQDSILLTNICEIVYQHVTNKSFNIYIKYCSNQFHIDRTLKSLRETN 502
E +++ + + + + + + H+ + L++
Sbjct: 18 EARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDYG 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,366,141
Number of extensions: 109051
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 39
Length of query: 654
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 563
Effective length of database: 1,158,166
Effective search space: 652047458
Effective search space used: 652047458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)