Query psy5774
Match_columns 201
No_of_seqs 141 out of 714
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 17:40:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4029|consensus 99.7 3.8E-18 8.3E-23 145.7 7.1 66 15-80 106-172 (228)
2 KOG3960|consensus 99.7 8.9E-16 1.9E-20 135.8 12.0 69 12-81 112-180 (284)
3 KOG3898|consensus 99.6 9.9E-16 2.1E-20 134.4 6.3 66 15-80 69-134 (254)
4 PF00010 HLH: Helix-loop-helix 99.5 6.5E-14 1.4E-18 95.3 6.2 53 18-70 1-55 (55)
5 KOG4395|consensus 99.4 3.1E-13 6.7E-18 119.9 6.7 64 17-80 173-236 (285)
6 cd00083 HLH Helix-loop-helix d 99.4 9.6E-13 2.1E-17 89.3 7.2 57 17-73 3-59 (60)
7 smart00353 HLH helix loop heli 99.3 4.6E-12 1E-16 84.8 7.3 52 23-74 1-52 (53)
8 KOG4447|consensus 99.2 1.6E-11 3.4E-16 102.5 3.0 62 18-80 78-139 (173)
9 KOG0561|consensus 98.9 1.1E-09 2.3E-14 99.9 4.3 57 14-71 56-112 (373)
10 KOG3910|consensus 98.8 2.5E-09 5.4E-14 102.4 4.4 73 2-79 515-588 (632)
11 KOG1319|consensus 98.2 2.1E-06 4.5E-11 74.4 4.9 64 16-79 60-127 (229)
12 KOG1318|consensus 98.0 1.3E-05 2.7E-10 75.7 5.7 62 15-76 230-292 (411)
13 KOG2483|consensus 97.4 0.00033 7.1E-09 61.8 6.3 60 17-76 58-117 (232)
14 KOG4304|consensus 96.9 0.00067 1.4E-08 60.2 3.2 58 18-75 32-94 (250)
15 KOG3561|consensus 96.8 0.0024 5.2E-08 64.8 5.9 61 12-72 14-75 (803)
16 KOG4447|consensus 96.6 0.00082 1.8E-08 56.7 1.2 56 17-73 20-76 (173)
17 KOG2588|consensus 95.9 0.0053 1.2E-07 63.1 2.9 62 16-79 274-335 (953)
18 PLN03217 transcription factor 93.2 0.19 4.2E-06 38.9 4.8 49 28-76 17-68 (93)
19 KOG3558|consensus 81.9 1.4 2.9E-05 45.0 3.4 83 27-113 55-140 (768)
20 KOG3560|consensus 59.3 8.5 0.00018 38.8 3.0 50 31-80 38-91 (712)
21 KOG3559|consensus 53.9 13 0.00029 36.4 3.3 46 27-72 10-56 (598)
22 PF13815 Dzip-like_N: Iguana/D 26.7 78 0.0017 24.6 3.2 24 55-78 59-83 (118)
23 PF05687 DUF822: Plant protein 26.4 78 0.0017 26.8 3.3 27 18-44 11-37 (150)
24 PF08651 DASH_Duo1: DASH compl 21.5 3.5E+02 0.0075 20.1 5.8 23 23-45 3-25 (78)
25 PF15459 RRP14: 60S ribosome b 21.3 88 0.0019 22.5 2.3 18 28-45 2-19 (64)
No 1
>KOG4029|consensus
Probab=99.73 E-value=3.8e-18 Score=145.73 Aligned_cols=66 Identities=47% Similarity=0.648 Sum_probs=62.2
Q ss_pred cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5774 15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPP-DKKLSKNEILRMSIRYIRLLNGVLEWQKQNE 80 (201)
Q Consensus 15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~-~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~ 80 (201)
...+|.++|+|||.||+.||.||+.||.+||..+. ++|||||+|||+||.||.+|+++|+.+....
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 44678899999999999999999999999999998 9999999999999999999999999988775
No 2
>KOG3960|consensus
Probab=99.66 E-value=8.9e-16 Score=135.85 Aligned_cols=69 Identities=38% Similarity=0.560 Sum_probs=62.4
Q ss_pred CCccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy5774 12 HPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNEN 81 (201)
Q Consensus 12 ~p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~~ 81 (201)
..-.+.||.+|.+|||+|+++||+||+.|+++.-..| +++|.||||||.||.||..||.||++......
T Consensus 112 ks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 112 KSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNP-NQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 3446779999999999999999999999999998775 56999999999999999999999999887754
No 3
>KOG3898|consensus
Probab=99.60 E-value=9.9e-16 Score=134.44 Aligned_cols=66 Identities=33% Similarity=0.438 Sum_probs=61.3
Q ss_pred cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5774 15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNE 80 (201)
Q Consensus 15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~ 80 (201)
...||+.+|+|||+|||+||+||+.||.+||+++.+.|||||+||++|.+||+.|+.++.......
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~~~ 134 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIAPL 134 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCCcc
Confidence 456899999999999999999999999999999999999999999999999999999988777653
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.49 E-value=6.5e-14 Score=95.29 Aligned_cols=53 Identities=42% Similarity=0.676 Sum_probs=49.4
Q ss_pred chhhcchHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHHHHHHH
Q psy5774 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTH--PPDKKLSKNEILRMSIRYIRLLN 70 (201)
Q Consensus 18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~--p~~kKLSKietLr~Ai~YI~~Lq 70 (201)
||..+|.+||.|+..||.+|+.|+.+||.. ....++||++||+.||+||.+||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 578899999999999999999999999986 36788999999999999999997
No 5
>KOG4395|consensus
Probab=99.41 E-value=3.1e-13 Score=119.89 Aligned_cols=64 Identities=39% Similarity=0.535 Sum_probs=60.0
Q ss_pred cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5774 17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNE 80 (201)
Q Consensus 17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~ 80 (201)
.||.++|+|||+||..||.||++||.+||....+++|||.+||++|..||..|..+|.....+.
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~~~~ 236 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPMSGL 236 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCccccC
Confidence 5899999999999999999999999999999999999999999999999999999997666554
No 6
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.40 E-value=9.6e-13 Score=89.35 Aligned_cols=57 Identities=51% Similarity=0.789 Sum_probs=53.4
Q ss_pred cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5774 17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVL 73 (201)
Q Consensus 17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL 73 (201)
.+|..+|.+||.|+..||.+|+.|+.+||......+++|+.||..|++||..|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467789999999999999999999999999877889999999999999999999865
No 7
>smart00353 HLH helix loop helix domain.
Probab=99.34 E-value=4.6e-12 Score=84.76 Aligned_cols=52 Identities=54% Similarity=0.847 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5774 23 NTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE 74 (201)
Q Consensus 23 N~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~ 74 (201)
|.+||.|+..||.+|+.|+.+||......+++|+.||..|++||..|+..++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999988778899999999999999999998764
No 8
>KOG4447|consensus
Probab=99.16 E-value=1.6e-11 Score=102.51 Aligned_cols=62 Identities=40% Similarity=0.690 Sum_probs=57.1
Q ss_pred chhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5774 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNE 80 (201)
Q Consensus 18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~ 80 (201)
+|..||.|||+|.++||+||..||+.+|..|.+ |||||.||++|..||.+|..+|.......
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsd-klSkiqtLklA~ryidfl~~vl~s~l~~~ 139 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSDLELD 139 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCcc-ccccccchhhcccCCchhhhccccccccc
Confidence 688999999999999999999999999999877 99999999999999999999997764443
No 9
>KOG0561|consensus
Probab=98.90 E-value=1.1e-09 Score=99.90 Aligned_cols=57 Identities=37% Similarity=0.592 Sum_probs=51.4
Q ss_pred ccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5774 14 RVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNG 71 (201)
Q Consensus 14 ~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~ 71 (201)
.++-||.-||-.||+||+.||.+|..||.+||.. .+.||||..||+...+||..|..
T Consensus 56 erRmRReIANsNERRRMQSINAGFqsLr~LlPr~-eGEKLSKAAILQQTa~yI~~Le~ 112 (373)
T KOG0561|consen 56 ERRMRREIANSNERRRMQSINAGFQSLRALLPRK-EGEKLSKAAILQQTADYIHQLEG 112 (373)
T ss_pred HHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcc-cchhhHHHHHHHHHHHHHHHHHh
Confidence 4556888899999999999999999999999998 45699999999999999988753
No 10
>KOG3910|consensus
Probab=98.83 E-value=2.5e-09 Score=102.43 Aligned_cols=73 Identities=29% Similarity=0.347 Sum_probs=63.5
Q ss_pred chhhhhhhCCCCccccchhhcchHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5774 2 SNEIVMEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVP-THPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQN 79 (201)
Q Consensus 2 s~~~~~e~~k~p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP-~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~ 79 (201)
.+++.++++| .||++.|+|||-|++.||+||.+|-+++- ++-.+|.-+|+-||..|+.-|..|++.+++-.-.
T Consensus 515 ~peqkaeREk-----ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERNLN 588 (632)
T KOG3910|consen 515 NPEQKAEREK-----ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERNLN 588 (632)
T ss_pred ChhhhhhHHH-----HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHccCC
Confidence 4566777777 89999999999999999999999999876 4447899999999999999999999999875543
No 11
>KOG1319|consensus
Probab=98.18 E-value=2.1e-06 Score=74.37 Aligned_cols=64 Identities=30% Similarity=0.408 Sum_probs=53.6
Q ss_pred ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5774 16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP----PDKKLSKNEILRMSIRYIRLLNGVLEWQKQN 79 (201)
Q Consensus 16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p----~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~ 79 (201)
-+||.++..-||.|...||.+|+.|+.+||..- ...||||.-||+.+|+||.+|..-...++..
T Consensus 60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e 127 (229)
T KOG1319|consen 60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEE 127 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888899999999999999999999653 3469999999999999999998766555544
No 12
>KOG1318|consensus
Probab=97.95 E-value=1.3e-05 Score=75.65 Aligned_cols=62 Identities=32% Similarity=0.408 Sum_probs=54.6
Q ss_pred cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774 15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP-PDKKLSKNEILRMSIRYIRLLNGVLEWQ 76 (201)
Q Consensus 15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq~lL~~~ 76 (201)
.++||..+|+=||+|+.+||..+..|..+||... .+-++.|--||..+++||..|++.++..
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 4467777999999999999999999999999653 5678889999999999999999988743
No 13
>KOG2483|consensus
Probab=97.43 E-value=0.00033 Score=61.80 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=51.9
Q ss_pred cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774 17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76 (201)
Q Consensus 17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~ 76 (201)
..|..+|+=||+|...|-++|+.||..||..+..++=.-+.+|+.|..||..|+.....+
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 468889999999999999999999999999876655558999999999999988766543
No 14
>KOG4304|consensus
Probab=96.93 E-value=0.00067 Score=60.21 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=48.1
Q ss_pred chhhcchHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHP-----PDKKLSKNEILRMSIRYIRLLNGVLEW 75 (201)
Q Consensus 18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-----~~kKLSKietLr~Ai~YI~~Lq~lL~~ 75 (201)
|+...=.-||+|...||++++.||.+||... ...||-|.|||.++++|.+.|+..-..
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 4555667799999999999999999999543 237999999999999999999875443
No 15
>KOG3561|consensus
Probab=96.77 E-value=0.0024 Score=64.82 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=53.9
Q ss_pred CCccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q psy5774 12 HPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP-PDKKLSKNEILRMSIRYIRLLNGV 72 (201)
Q Consensus 12 ~p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq~l 72 (201)
+...+..|..+|.-||+|+.++|.-+++|-.+||+.. -.+|+-|..|||+|+..|+.+..+
T Consensus 14 d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 14 DSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 3445567999999999999999999999999999765 578999999999999999888775
No 16
>KOG4447|consensus
Probab=96.61 E-value=0.00082 Score=56.73 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=48.4
Q ss_pred cchhhcchH-HHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5774 17 VRKIFTNTR-ERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVL 73 (201)
Q Consensus 17 ~RR~~aN~R-ER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL 73 (201)
..+..++.| ||.|.+.+|++|.-|+.++|..|.+ +.+++.+|+.+..||..|.++-
T Consensus 20 ~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~-gk~~~ktlr~~~~~~~~~dE~q 76 (173)
T KOG4447|consen 20 SEEECDRQRKERGRKRRLSDASTLLGKLEPGSPAD-GKRGKKTLRIGTDSIQSLDELQ 76 (173)
T ss_pred hhhhhhhhHHHHhHHhhhhhhhhhccccCCCCCCc-ccccccccccCCCchhhHHHHH
Confidence 445566666 9999999999999999999999866 7899999999999999887743
No 17
>KOG2588|consensus
Probab=95.89 E-value=0.0053 Score=63.11 Aligned_cols=62 Identities=29% Similarity=0.362 Sum_probs=54.8
Q ss_pred ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5774 16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQN 79 (201)
Q Consensus 16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~ 79 (201)
..||.++|.=|++=+-+||+-..+||+.||..+ -||.|-.+||.||+||..|+......+..
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~--aKl~kSavLr~ai~~i~dl~~~nq~lk~~ 335 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTE--AKLNKSAVLRKAIDYIEDLQGYNQKLKLE 335 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccH--hhhhhhhhHHHHHHHHHHhhccccccchh
Confidence 367999999999999999999999999999874 48999999999999999999876655544
No 18
>PLN03217 transcription factor ATBS1; Provisional
Probab=93.21 E-value=0.19 Score=38.93 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774 28 WRQQNVSGAFGELRRLVPTHP---PDKKLSKNEILRMSIRYIRLLNGVLEWQ 76 (201)
Q Consensus 28 ~R~~~IN~AF~~LR~~lP~~p---~~kKLSKietLr~Ai~YI~~Lq~lL~~~ 76 (201)
---.+||+-..+|+.+||... ...|.|-..+|+.++.||..|..-++.-
T Consensus 17 isddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdL 68 (93)
T PLN03217 17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDL 68 (93)
T ss_pred CCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334789999999999999653 3457888899999999999887766543
No 19
>KOG3558|consensus
Probab=81.87 E-value=1.4 Score=44.98 Aligned_cols=83 Identities=27% Similarity=0.378 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCccccccccccccCCC-c
Q psy5774 27 RWRQQNVSGAFGELRRLVPTHP--PDKKLSKNEILRMSIRYIRLLNGVLEWQKQNENNYNNNNTTDINANNNIITNNR-D 103 (201)
Q Consensus 27 R~R~~~IN~AF~~LR~~lP~~p--~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~~~~~s~~ts~~s~~~n~i~s~~-s 103 (201)
|.|+.+=|.-|.+|..+|| +| -.-.|-|+.|+|+||.|.+ |.+++.....+...+...+ .....++-|.... .
T Consensus 55 RsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLR-lrk~a~~g~~p~~e~~~~~--~e~~l~~~iLqsLDG 130 (768)
T KOG3558|consen 55 RSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLR-LRKFAGAGDPPRAEGEPEN--LEQHLGDHILQSLDG 130 (768)
T ss_pred hhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHH-HHHHhhcCCcccccCCCcc--hhhhhhhhHHhhccc
Confidence 5678899999999999999 44 3568999999999999976 4555544433321111111 0111233333222 6
Q ss_pred ccccccCCCC
Q psy5774 104 FVVNANKRGD 113 (201)
Q Consensus 104 ~~v~~~~~g~ 113 (201)
|++..++.|+
T Consensus 131 FVm~l~~dG~ 140 (768)
T KOG3558|consen 131 FVMALTQDGD 140 (768)
T ss_pred eEEEEccCCC
Confidence 7777777663
No 20
>KOG3560|consensus
Probab=59.28 E-value=8.5 Score=38.77 Aligned_cols=50 Identities=26% Similarity=0.449 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCCCCHHHHHHHHHHHHH---HHHHHHhhhcCCC
Q psy5774 31 QNVSGAFGELRRLVPTHPP-DKKLSKNEILRMSIRYIR---LLNGVLEWQKQNE 80 (201)
Q Consensus 31 ~~IN~AF~~LR~~lP~~p~-~kKLSKietLr~Ai~YI~---~Lq~lL~~~~~~~ 80 (201)
..||.-++.|..+||+.+. =-||-|+.+||+++.|++ +.+-+|+......
T Consensus 38 dRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~~~~ 91 (712)
T KOG3560|consen 38 DRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSSRQP 91 (712)
T ss_pred HHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCcccc
Confidence 4589999999999998652 358999999999999985 5667776655443
No 21
>KOG3559|consensus
Probab=53.87 E-value=13 Score=36.36 Aligned_cols=46 Identities=28% Similarity=0.475 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q psy5774 27 RWRQQNVSGAFGELRRLVPTHP-PDKKLSKNEILRMSIRYIRLLNGV 72 (201)
Q Consensus 27 R~R~~~IN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq~l 72 (201)
|.|.+.=|.-|..|.++||... -.-.|-|..++|++..||.+=.-.
T Consensus 10 ~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vF 56 (598)
T KOG3559|consen 10 RTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVF 56 (598)
T ss_pred HHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhc
Confidence 4677788999999999999654 234599999999999999865443
No 22
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=26.67 E-value=78 Score=24.65 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.0
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhhcC
Q psy5774 55 KN-EILRMSIRYIRLLNGVLEWQKQ 78 (201)
Q Consensus 55 Ki-etLr~Ai~YI~~Lq~lL~~~~~ 78 (201)
|+ .+++++|+|+.+.++.|...-.
T Consensus 59 klfrLaQl~ieYLl~~q~~L~~~~~ 83 (118)
T PF13815_consen 59 KLFRLAQLSIEYLLHCQEYLSSQLE 83 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 8899999999999999876543
No 23
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=26.41 E-value=78 Score=26.76 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=21.4
Q ss_pred chhhcchHHHHHHHHHHHHHHHHHhcC
Q psy5774 18 RKIFTNTRERWRQQNVSGAFGELRRLV 44 (201)
Q Consensus 18 RR~~aN~RER~R~~~IN~AF~~LR~~l 44 (201)
-|.....|||+|..---.-|..||.+=
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~G 37 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHG 37 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555689999988888999999973
No 24
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=21.53 E-value=3.5e+02 Score=20.09 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHHHHHhcCC
Q psy5774 23 NTRERWRQQNVSGAFGELRRLVP 45 (201)
Q Consensus 23 N~RER~R~~~IN~AF~~LR~~lP 45 (201)
=.||..-+++||..|+.+-..|-
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~ 25 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLR 25 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999998866553
No 25
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=21.33 E-value=88 Score=22.54 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhcCC
Q psy5774 28 WRQQNVSGAFGELRRLVP 45 (201)
Q Consensus 28 ~R~~~IN~AF~~LR~~lP 45 (201)
.|++.=|.+|+.|-.+||
T Consensus 2 erl~~h~~~Fd~Ll~LIP 19 (64)
T PF15459_consen 2 ERLRAHSSFFDGLLSLIP 19 (64)
T ss_pred cHHHHHHHHHHHHHHhCC
Confidence 477888999999999999
Done!