Query psy5774
Match_columns 201
No_of_seqs 141 out of 714
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:40:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 1.1E-23 3.8E-28 148.1 7.2 59 17-75 1-59 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.9 2.5E-22 8.6E-27 144.6 6.3 62 13-75 7-68 (68)
3 4aya_A DNA-binding protein inh 99.8 2E-20 6.8E-25 143.4 7.7 66 16-81 23-88 (97)
4 2lfh_A DNA-binding protein inh 99.8 4.5E-21 1.6E-25 138.7 3.3 53 19-71 15-67 (68)
5 3u5v_A Protein MAX, transcript 99.7 4E-17 1.4E-21 119.5 5.5 64 16-79 3-67 (76)
6 1hlo_A Protein (transcription 99.6 5E-15 1.7E-19 107.9 6.5 60 16-76 10-69 (80)
7 1nkp_A C-MYC, MYC proto-oncoge 99.5 1.6E-14 5.3E-19 107.9 6.7 59 17-75 5-63 (88)
8 1nkp_B MAX protein, MYC proto- 99.5 1.6E-14 5.6E-19 105.5 6.5 57 18-75 2-58 (83)
9 1nlw_A MAD protein, MAX dimeri 99.4 1.3E-13 4.3E-18 101.5 6.8 56 19-74 2-57 (80)
10 1an4_A Protein (upstream stimu 99.3 4.8E-13 1.6E-17 93.7 3.3 56 16-71 3-61 (65)
11 1am9_A Srebp-1A, protein (ster 99.3 2E-12 6.8E-17 95.0 6.5 60 15-76 3-62 (82)
12 1a0a_A BHLH, protein (phosphat 99.2 2.9E-12 9.8E-17 90.5 2.1 56 18-73 2-61 (63)
13 4h10_B Circadian locomoter out 99.2 6.6E-11 2.3E-15 85.8 6.9 60 15-76 5-64 (71)
14 4ati_A MITF, microphthalmia-as 99.1 2E-10 6.8E-15 89.7 7.4 64 15-78 24-88 (118)
15 4h10_A ARYL hydrocarbon recept 99.1 1E-10 3.5E-15 84.9 4.0 57 16-72 7-64 (73)
16 4f3l_A Mclock, circadian locom 98.5 1.1E-07 3.8E-12 83.3 6.8 58 15-74 9-66 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.2 6.1E-07 2.1E-11 79.7 4.1 58 13-70 8-66 (387)
18 4ath_A MITF, microphthalmia-as 97.6 9.6E-05 3.3E-09 55.1 6.2 44 31-74 5-49 (83)
19 3muj_A Transcription factor CO 92.0 0.26 8.8E-06 39.7 5.6 40 31-70 94-134 (138)
20 3mlp_A Transcription factor CO 63.3 1.5 5.1E-05 40.4 0.0 39 31-69 320-359 (402)
21 1iur_A KIAA0730 protein; DNAJ 25.9 61 0.0021 23.1 3.4 22 27-48 57-78 (88)
22 1pd7_B MAD1; PAH2, SIN3, eukar 24.9 49 0.0017 19.5 2.2 20 52-71 1-20 (26)
23 3zy1_A Tumor protein 63; trans 20.3 81 0.0028 20.8 2.8 22 24-46 12-34 (46)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.89 E-value=1.1e-23 Score=148.13 Aligned_cols=59 Identities=37% Similarity=0.552 Sum_probs=56.6
Q ss_pred cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774 17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW 75 (201)
Q Consensus 17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 75 (201)
.||.+||+|||.||+.||.||+.||.+||..+.++|||||+||+.||+||.+|+++|+.
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 37889999999999999999999999999999999999999999999999999999975
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.86 E-value=2.5e-22 Score=144.55 Aligned_cols=62 Identities=37% Similarity=0.508 Sum_probs=57.0
Q ss_pred CccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774 13 PRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW 75 (201)
Q Consensus 13 p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 75 (201)
.....+|.+||+|||.||+.||+||+.||.+||..| ++|||||+||+.||+||.+|+++|++
T Consensus 7 ~~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 7 TTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 345678999999999999999999999999999875 78999999999999999999999863
No 3
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=143.40 Aligned_cols=66 Identities=29% Similarity=0.332 Sum_probs=54.6
Q ss_pred ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy5774 16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQNEN 81 (201)
Q Consensus 16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~~~ 81 (201)
..|+..+..+||.||+.||+||+.||++||..|.++|||||||||+||+||.+|+++|++.+....
T Consensus 23 i~R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~ 88 (97)
T 4aya_A 23 ISRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSF 88 (97)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 345555567789999999999999999999999999999999999999999999999998877653
No 4
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.81 E-value=4.5e-21 Score=138.74 Aligned_cols=53 Identities=30% Similarity=0.330 Sum_probs=50.5
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5774 19 KIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNG 71 (201)
Q Consensus 19 R~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~ 71 (201)
+..||+|||.||+.||.||+.||++||..|.++|||||||||+||+||.+||.
T Consensus 15 ~~~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 15 KGPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 34789999999999999999999999999999999999999999999999984
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.67 E-value=4e-17 Score=119.52 Aligned_cols=64 Identities=27% Similarity=0.315 Sum_probs=53.1
Q ss_pred ccchhhcchHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy5774 16 LVRKIFTNTRERWRQQNVSGAFGELRRLVP-THPPDKKLSKNEILRMSIRYIRLLNGVLEWQKQN 79 (201)
Q Consensus 16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP-~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~~ 79 (201)
..||..+|++||.|+..||.+|+.||.+|| ..+.++.+||++||+.||+||..|+..|++....
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~ 67 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN 67 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999999999999999 4667777799999999999999999999876654
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=5e-15 Score=107.94 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=54.7
Q ss_pred ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774 16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76 (201)
Q Consensus 16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~ 76 (201)
..+|..||++||.|+..||.+|+.|+.+||..+. .|+||++||+.|++||.+|+..++..
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~-~k~sK~~iL~~Ai~YI~~L~~~~~~L 69 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKNHTH 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTT-SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCC-CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998764 58999999999999999999887654
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=1.6e-14 Score=107.86 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=55.0
Q ss_pred cchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774 17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW 75 (201)
Q Consensus 17 ~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 75 (201)
.+|..+|+.||.|+..||.+|+.||.+||..+...|+||+.||+.||+||..|+.....
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~ 63 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999998888999999999999999999987543
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.52 E-value=1.6e-14 Score=105.55 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=52.2
Q ss_pred chhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy5774 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEW 75 (201)
Q Consensus 18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~ 75 (201)
+|..+|.+||.|+..||.+|+.|+.+||..+ +.|+||++||+.|++||.+|+..++.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999876 45899999999999999999976654
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=1.3e-13 Score=101.53 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=52.9
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5774 19 KIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE 74 (201)
Q Consensus 19 R~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~ 74 (201)
|..+|+.||.|+..||.+|+.||.+||..+...|+||+.||+.|++||..|+.-..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~ 57 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999888999999999999999999998654
No 10
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.33 E-value=4.8e-13 Score=93.70 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=51.0
Q ss_pred ccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCCHHHHHHHHHHHHHHHHH
Q psy5774 16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPD---KKLSKNEILRMSIRYIRLLNG 71 (201)
Q Consensus 16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~---kKLSKietLr~Ai~YI~~Lq~ 71 (201)
..+|..+|..||.|...||.+|..|+.+||..... .|+||+.||..||+||..|+.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~ 61 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999987643 589999999999999999986
No 11
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.33 E-value=2e-12 Score=95.01 Aligned_cols=60 Identities=27% Similarity=0.334 Sum_probs=54.3
Q ss_pred cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774 15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76 (201)
Q Consensus 15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~ 76 (201)
...+|..+|..||.|+..||++|..|+.+||.. +.|++|+.||..||+||.+|+..+..-
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L 62 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKL 62 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999974 569999999999999999999887654
No 12
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.21 E-value=2.9e-12 Score=90.47 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=50.2
Q ss_pred chhhcchHHHHHHHHHHHHHHHHHhcCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5774 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHP----PDKKLSKNEILRMSIRYIRLLNGVL 73 (201)
Q Consensus 18 RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p----~~kKLSKietLr~Ai~YI~~Lq~lL 73 (201)
||..++.-||.|+..||.+|+.|+.+||... ...++||.+||.+||+||..|++.+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999543 2579999999999999999998754
No 13
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.16 E-value=6.6e-11 Score=85.85 Aligned_cols=60 Identities=22% Similarity=0.428 Sum_probs=53.5
Q ss_pred cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q psy5774 15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76 (201)
Q Consensus 15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~~~ 76 (201)
.+.+|..+|..||+|...||..|..|+.+||. ...|++|..||+.||+||..|+..+..-
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 34688899999999999999999999999994 3569999999999999999999987543
No 14
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.09 E-value=2e-10 Score=89.69 Aligned_cols=64 Identities=33% Similarity=0.427 Sum_probs=50.0
Q ss_pred cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q psy5774 15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP-PDKKLSKNEILRMSIRYIRLLNGVLEWQKQ 78 (201)
Q Consensus 15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq~lL~~~~~ 78 (201)
...+|..+|.-||.|...||..|..|+.+||... .+.|++|+.||..||+||.+|+..+.....
T Consensus 24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999999764 467999999999999999999987765543
No 15
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=84.94 Aligned_cols=57 Identities=28% Similarity=0.420 Sum_probs=50.7
Q ss_pred ccchhhcchHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5774 16 LVRKIFTNTRERWRQQNVSGAFGELRRLVPTH-PPDKKLSKNEILRMSIRYIRLLNGV 72 (201)
Q Consensus 16 ~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~-p~~kKLSKietLr~Ai~YI~~Lq~l 72 (201)
..+|..++.-||+|...||.+|+.|+.+||.. ....||+|+.||+.||+||..|+..
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 35788899999999999999999999999954 3467999999999999999998753
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.54 E-value=1.1e-07 Score=83.28 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=44.1
Q ss_pred cccchhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5774 15 VLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLE 74 (201)
Q Consensus 15 ~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p~~kKLSKietLr~Ai~YI~~Lq~lL~ 74 (201)
...+|..+|..||+|+.+||..|..|+.+|| ....||.|+.||++||.||..|+.+-.
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 3467888999999999999999999999999 345799999999999999999987653
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.23 E-value=6.1e-07 Score=79.75 Aligned_cols=58 Identities=28% Similarity=0.403 Sum_probs=49.9
Q ss_pred CccccchhhcchHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q psy5774 13 PRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHP-PDKKLSKNEILRMSIRYIRLLN 70 (201)
Q Consensus 13 p~~~~RR~~aN~RER~R~~~IN~AF~~LR~~lP~~p-~~kKLSKietLr~Ai~YI~~Lq 70 (201)
+..+.+|..+|.-||+|+.+||..|..|+.+||... ...||.|+.||++||.||..|+
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~ 66 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence 444567888999999999999999999999999643 4579999999999999999987
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.64 E-value=9.6e-05 Score=55.10 Aligned_cols=44 Identities=34% Similarity=0.557 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy5774 31 QNVSGAFGELRRLVPTH-PPDKKLSKNEILRMSIRYIRLLNGVLE 74 (201)
Q Consensus 31 ~~IN~AF~~LR~~lP~~-p~~kKLSKietLr~Ai~YI~~Lq~lL~ 74 (201)
-+||..+..|..+||.. ..+-|++|-.||+.|++||.+|+.-..
T Consensus 5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~ 49 (83)
T 4ath_A 5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 49 (83)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999964 357799999999999999999987443
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=92.04 E-value=0.26 Score=39.69 Aligned_cols=40 Identities=23% Similarity=0.516 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCCCCHHHHHHHHHHHHHHHH
Q psy5774 31 QNVSGAFGELRRLVPTHPP-DKKLSKNEILRMSIRYIRLLN 70 (201)
Q Consensus 31 ~~IN~AF~~LR~~lP~~p~-~kKLSKietLr~Ai~YI~~Lq 70 (201)
-.|+-+|++|.++||-+|. -.+|.|--+|+.|.++...|-
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 4688999999999998874 479999999999999988773
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=63.33 E-value=1.5 Score=40.40 Aligned_cols=39 Identities=26% Similarity=0.551 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCCCCHHHHHHHHHHHHHHH
Q psy5774 31 QNVSGAFGELRRLVPTHPP-DKKLSKNEILRMSIRYIRLL 69 (201)
Q Consensus 31 ~~IN~AF~~LR~~lP~~p~-~kKLSKietLr~Ai~YI~~L 69 (201)
-.|.-+|.+|.++||.+|. -.+|.|--+|+.|.+++..|
T Consensus 320 PtIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~eal 359 (402)
T 3mlp_A 320 PTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEAL 359 (402)
T ss_dssp CTTTTTTTTTTTC-----------CHHHHHHHHHHHHHHH
T ss_pred CccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHh
Confidence 4577899999999998874 47999999999999998877
No 21
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=25.94 E-value=61 Score=23.05 Aligned_cols=22 Identities=5% Similarity=-0.012 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC
Q psy5774 27 RWRQQNVSGAFGELRRLVPTHP 48 (201)
Q Consensus 27 R~R~~~IN~AF~~LR~~lP~~p 48 (201)
..+.+.||+||+.|....+..+
T Consensus 57 ~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 57 NEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHhhccccc
Confidence 3589999999999999887544
No 22
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=24.85 E-value=49 Score=19.54 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy5774 52 KLSKNEILRMSIRYIRLLNG 71 (201)
Q Consensus 52 KLSKietLr~Ai~YI~~Lq~ 71 (201)
+|..|++|-.|.+|+.....
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 46678999999999987765
No 23
>3zy1_A Tumor protein 63; transcription, transcription factor, tetramerization domain, cycle control; 2.15A {Homo sapiens}
Probab=20.29 E-value=81 Score=20.80 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=16.9
Q ss_pred hHHH-HHHHHHHHHHHHHHhcCCC
Q psy5774 24 TRER-WRQQNVSGAFGELRRLVPT 46 (201)
Q Consensus 24 ~RER-~R~~~IN~AF~~LR~~lP~ 46 (201)
.||| ..+++||++++ |...+|.
T Consensus 12 GRe~yE~l~ki~e~LE-L~~~~pq 34 (46)
T 3zy1_A 12 GRETYEMLLKIKESLE-LMQYLPQ 34 (46)
T ss_dssp SHHHHHHHHHHHHHHH-GGGGSCH
T ss_pred chhhHHHHHHHHHHHH-HHhccch
Confidence 3566 46799999998 7888874
Done!