RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5774
         (201 letters)



>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 49.9 bits (119), Expect = 2e-09
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 7  MEVGKHPRVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYI 66
          ME+ +      R+     RER R   V+ AF  L+R   ++ P+++L K EILR +IRYI
Sbjct: 1  MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYI 59

Query: 67 RLLNGVLE 74
            L  +L 
Sbjct: 60 EGLQALLR 67


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 49.1 bits (117), Expect = 7e-09
 Identities = 15/65 (23%), Positives = 28/65 (43%)

Query: 14 RVLVRKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVL 73
           + V++   N  ER R+  +  +F  LR  +P    ++K  K  IL+ +  YI  +    
Sbjct: 2  HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEE 61

Query: 74 EWQKQ 78
          +    
Sbjct: 62 QKLIS 66


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 46.3 bits (110), Expect = 4e-08
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTH---PPDKKLSKNEILRMSIRYIRLL 69
          R+   N  ER R+  ++    +L +++P           SK  IL  +  YI+ L
Sbjct: 5  RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 46.4 bits (110), Expect = 5e-08
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 23 NTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLL 69
          N  E+ R+ ++  +  +L+ LVP  P   + +   +L  +  +I+ L
Sbjct: 6  NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKL 52


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 46.0 bits (109), Expect = 8e-08
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQK 77
          ++   N  ER R+ ++  +F  LR  VP     +K S+ +IL  +  YI+ +       +
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSVP-SLQGEKASRAQILDKATEYIQYMRRKNHTHQ 60

Query: 78 Q 78
          Q
Sbjct: 61 Q 61


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 44.9 bits (106), Expect = 1e-07
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 17 VRKIFTNTRERWRQQNVSGAFGELRRLVPTHP----PDKKLSKNEILRMSIRYIRLL 69
          +++      E+ R+  ++ A  EL  L+P            SK   +  + RYIR L
Sbjct: 1  MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHL 57


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 18 RKIFTNTRERWRQQNVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQK 77
          ++   N  E+  + +++    EL+ LV       KL+K+ +LR +I YIR L    +  K
Sbjct: 6  KRTAHNAIEKRYRSSINDKIIELKDLVVGTE--AKLNKSAVLRKAIDYIRFLQHSNQKLK 63

Query: 78 QNEN 81
          Q   
Sbjct: 64 QENL 67


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 29.7 bits (67), Expect = 0.034
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 32 NVSGAFGELRRLVPTHPPDKKLSKNEILRMSIRYIRLL 69
          +++    EL+ LV     D K+ K+ +LR +I YI+ L
Sbjct: 3  SINDKIIELKDLVM--GTDAKMHKSGVLRKAIDYIKYL 38


>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)
          [TaxId: 9823]}
          Length = 476

 Score = 26.3 bits (57), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 38 GELRRLVPTHPPDKKLSKNEILRMSIRYIRLLNGVLEWQ 76
          G LR L+P   P +  +  +IL+   + I  + GV  W 
Sbjct: 36 GYLRPLIPATAPQEPDTFEDILQDVEKII--MPGVTHWH 72


>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase
           {Streptoverticillium mobaraense [TaxId: 35621]}
          Length = 331

 Score = 24.7 bits (53), Expect = 9.4
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 68  LLNGVLEWQKQNENNYNNNNTTDINANNNIITNNRDFVVNANKRGDSKTSIKETNPFERK 127
           ++N  LE    +E+ Y +N   ++        N  D + N + R    ++++ T  F+ +
Sbjct: 132 VMNRALE-NAHDESAYLDNLKKEL-------ANGNDALRNEDARSPFYSALRNTPSFKER 183

Query: 128 PNGNYFNSK 136
             GN+  S+
Sbjct: 184 NGGNHDPSR 192


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 722,254
Number of extensions: 32035
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 18
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)