BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5779
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 15 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 74
E++++E Y K L + + ++ ++ S+ + +FGN+ + +C + + ALEQ
Sbjct: 125 EILSTERDYIKHLRDICEGYVRQ-CRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQ 183
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
L ERK Q ELI +E +Y L ++ + F PL++ +L++ + +F N +
Sbjct: 3 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLMES-ELLTEKEVAMIFVNWKEL 60
Query: 62 RKCSERLLAAL 72
C+ +LL AL
Sbjct: 61 IMCNIKLLKAL 71
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
L ERK Q ELI +E +Y L ++ + F PL++ +L++ + +F N +
Sbjct: 3 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLMES-ELLTEKEVAMIFVNWKEL 60
Query: 62 RKCSERLLAAL 72
C+ +LL AL
Sbjct: 61 IMCNIKLLKAL 71
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 15 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 74
E++++E Y K L + + ++ + S+ + +FGN+ + +C + + ALEQ
Sbjct: 162 EILSTERDYIKHLRDICEGYVRQ-CRKRADXFSEEQLRTIFGNIEDIYRCQKAFVKALEQ 220
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
L ERK Q ELI +E +Y L ++ + F PL + +L++ + +F N +
Sbjct: 76 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLTES-ELLTEKEVAMIFVNWKEL 133
Query: 62 RKCSERLLAAL 72
C+ +LL AL
Sbjct: 134 IMCNIKLLKAL 144
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
L A E K QEA FEL E + L + +K + P L ++I ++ + +FG + +
Sbjct: 12 VLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAY-HDPXL-KLSIXTEQELNQIFGTLDS 69
Query: 61 VRKCSERLLAAL 72
+ E LL+ L
Sbjct: 70 LIPLHEELLSQL 81
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 8 KLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER 67
KL++ EL+ +E +Y K L L + ++ PL + L++++ LFGN+T +
Sbjct: 11 KLRKVICELLETERTYVKDLNCLXERYL-KPLQKE-TFLTQDELDVLFGNLTEXVEFQVE 68
Query: 68 LLAALE 73
L LE
Sbjct: 69 FLKTLE 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,041,905
Number of Sequences: 62578
Number of extensions: 61478
Number of successful extensions: 156
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 7
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)