BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5779
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94989|ARHGF_HUMAN Rho guanine nucleotide exchange factor 15 OS=Homo sapiens
GN=ARHGEF15 PE=1 SV=4
Length = 841
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
TL ER++QE+ FE++TSEASY +SL +L F+ S L D L+ D LF NV
Sbjct: 410 TLSPQERRMQESLFEVVTSEASYLRSLRLLTDTFVLSQALRDT--LTPRDHHTLFSNVQR 467
Query: 61 VRKCSERLLAAL 72
V+ SER LA L
Sbjct: 468 VQGVSERFLATL 479
>sp|Q8IW93|ARHGJ_HUMAN Rho guanine nucleotide exchange factor 19 OS=Homo sapiens
GN=ARHGEF19 PE=2 SV=1
Length = 802
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 8 KLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER 67
KLQEAKFELITSEASY SL+V HF+ S L + L D++ LF + V+ SER
Sbjct: 376 KLQEAKFELITSEASYIHSLSVAVGHFLGSAELSEC--LGAQDKQWLFSKLPEVKSTSER 433
Query: 68 LLAALEQ 74
L LEQ
Sbjct: 434 FLQDLEQ 440
>sp|Q5BKC9|NGEF_RAT Ephexin-1 OS=Rattus norvegicus GN=Ngef PE=1 SV=2
Length = 701
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
L E KLQEA FEL+TSEASY+KSL +L HF+ + L IL ++ LF NV V
Sbjct: 258 LQPEETKLQEAMFELVTSEASYYKSLNLLVSHFMENERLK--KILHPSEAHILFSNVLDV 315
Query: 62 RKCSERLLAALEQCWQDSILL 82
SER L LE +++I++
Sbjct: 316 MAVSERFLLELEHRMEENIVI 336
>sp|Q8BWA8|ARHGJ_MOUSE Rho guanine nucleotide exchange factor 19 OS=Mus musculus
GN=Arhgef19 PE=1 SV=1
Length = 802
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 8 KLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER 67
KLQEAKFELITSEASY SL+V HF+ S L + L D++ LF + V+ SER
Sbjct: 376 KLQEAKFELITSEASYIHSLSVAVGHFLGSVELSEC--LGTQDKQWLFSKLPEVKSTSER 433
Query: 68 LLAALEQCWQDSIL 81
L LEQ + +L
Sbjct: 434 FLHDLEQRLEADVL 447
>sp|Q5FWH6|ARHGF_MOUSE Rho guanine nucleotide exchange factor 15 OS=Mus musculus
GN=Arhgef15 PE=1 SV=1
Length = 849
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
+L ER++QE+ FE++TSEASY +SL +L F+ S L D L+ D LF NV
Sbjct: 418 SLSPQERRMQESLFEVVTSEASYLRSLRLLTDTFVLSQALRDT--LTPRDHHTLFSNVQR 475
Query: 61 VRKCSERLLAAL 72
V+ SER L L
Sbjct: 476 VQSVSERFLGTL 487
>sp|Q8CHT1|NGEF_MOUSE Ephexin-1 OS=Mus musculus GN=Ngef PE=1 SV=1
Length = 710
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
L E +LQEA FEL+TSEASY+KSL +L HF+ + L IL ++ LF NV V
Sbjct: 267 LQPEEIRLQEAMFELVTSEASYYKSLNLLVSHFMENERLK--KILHPSEAHILFSNVLDV 324
Query: 62 RKCSERLLAALEQCWQDSILL 82
SER L LE +++I++
Sbjct: 325 MAVSERFLLELEHRMEENIVI 345
>sp|Q5RDX5|NGEF_PONAB Ephexin-1 OS=Pongo abelii GN=NGEF PE=2 SV=1
Length = 709
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
L E KLQEA FEL+TSEASY+KSL +L HF+ + + IL ++ LF NV V
Sbjct: 266 LQPEEIKLQEAMFELVTSEASYYKSLNLLVSHFMENERIR--KILHPSEAHILFSNVLDV 323
Query: 62 RKCSERLLAALEQCWQDSILL 82
SER L LE +++I++
Sbjct: 324 LAVSERFLLELEHRMEENIVI 344
>sp|Q8N5V2|NGEF_HUMAN Ephexin-1 OS=Homo sapiens GN=NGEF PE=2 SV=2
Length = 710
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
L E KLQEA FEL+TSEASY+KSL +L HF+ + + IL ++ LF NV V
Sbjct: 267 LQPEEIKLQEAMFELVTSEASYYKSLNLLVSHFMENERIR--KILHPSEAHILFSNVLDV 324
Query: 62 RKCSERLLAALEQCWQDSILL 82
SER L LE +++I++
Sbjct: 325 LAVSERFLLELEHRMEENIVI 345
>sp|Q96DR7|ARHGQ_HUMAN Rho guanine nucleotide exchange factor 26 OS=Homo sapiens
GN=ARHGEF26 PE=1 SV=4
Length = 871
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
T+ ERK QEA FE+I+SE SY SL +L + F S L D ++K +R HLF N+T
Sbjct: 432 TVSQEERKRQEAIFEVISSEHSYLLSLEILIRMFKNSKELSDT--MTKTERHHLFSNITD 489
Query: 61 VRKCSERLLAALEQCWQDSILL 82
V + S++ LE Q++I +
Sbjct: 490 VCEASKKFFIELEARHQNNIFI 511
>sp|Q12774|ARHG5_HUMAN Rho guanine nucleotide exchange factor 5 OS=Homo sapiens GN=ARHGEF5
PE=1 SV=3
Length = 1597
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 6 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
++KLQE KFELI SEASY +SL + HF S L LS + + LF + VR S
Sbjct: 1172 DQKLQEVKFELIVSEASYLRSLNIAVDHFQLSTSLRAT--LSNQEHQWLFSRLQDVRDVS 1229
Query: 66 ERLLAALEQCWQDSIL 81
L+ LE+ ++++I
Sbjct: 1230 ATFLSDLEENFENNIF 1245
>sp|Q3U5C8|ARHGG_MOUSE Rho guanine nucleotide exchange factor 16 OS=Mus musculus
GN=Arhgef16 PE=1 SV=3
Length = 713
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
TL ERK QEA FE++TSE SY SL++L F+ S L +++ + HLF N+
Sbjct: 281 TLSTEERKRQEAIFEILTSEFSYLHSLSILVTEFLQSRELRAT--MTQTEHHHLFSNILD 338
Query: 61 VRKCSERLLAALEQ 74
V S++ ALEQ
Sbjct: 339 VMSASQKFFEALEQ 352
>sp|Q5VV41|ARHGG_HUMAN Rho guanine nucleotide exchange factor 16 OS=Homo sapiens
GN=ARHGEF16 PE=1 SV=1
Length = 709
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
L ERK QEA FE++TSE SY SL++L + F+ S L +++ + HLF N+ V
Sbjct: 278 LSTEERKRQEAMFEILTSEFSYQHSLSILVEEFLQSKELR--ATVTQMEHHHLFSNILDV 335
Query: 62 RKCSERLLAALEQCWQDSILLQ 83
S+R LEQ + +L++
Sbjct: 336 LGASQRFFEDLEQRHKAQVLVE 357
>sp|P51862|ROM2_YEAST RHO1 GDP-GTP exchange protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ROM2 PE=1 SV=1
Length = 1356
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILS----KNDRKHLFGN 57
L E K QEA +E+ +E ++ KSL + F+ + L + NI+S KN KH+F +
Sbjct: 653 LPKKEIKRQEAIYEVYITEKNFVKSLEITRDTFMKT--LAETNIISADIRKNFIKHVFAH 710
Query: 58 VTAVRKCSERLLAAL 72
+ + + R L AL
Sbjct: 711 INDIYSVNRRFLKAL 725
>sp|P53046|ROM1_YEAST RHO1 GDP-GTP exchange protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ROM1 PE=1 SV=2
Length = 1155
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDR----KHLFG 56
+L + K QEA +EL T+E + KSL ++ F+ L + NI+ + R KH+F
Sbjct: 457 SLSKQQIKRQEAIYELFTTEKKFVKSLEIIRDTFMKK--LLETNIIPSDVRINFVKHVFA 514
Query: 57 NVTAVRKCSERLLAALEQ 74
++ + + L AL Q
Sbjct: 515 HINEIYSVNREFLKALAQ 532
>sp|Q8R0J1|PKHG6_MOUSE Pleckstrin homology domain-containing family G member 6 OS=Mus
musculus GN=Plekhg6 PE=1 SV=2
Length = 787
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 10 QEAKFELITSEASYFKSLTVLEKHFIASPL-LDDVNILSKNDRKHLFGNVTAVRKCSERL 68
QEA +EL+T+E Y + L ++ A L L V +L++ + LFGNV + + R
Sbjct: 163 QEALWELLTTELIYLRKLKIMTDLLAAGLLNLQRVGLLTEVSAETLFGNVPNLIRAHRRF 222
>sp|Q0I2X4|UVRC_HAES1 UvrABC system protein C OS=Haemophilus somnus (strain 129Pt)
GN=uvrC PE=3 SV=1
Length = 609
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 7 RKLQEAKFELITSEASYFKS-----LTVLEKHFIASPLLDDVNILS 47
+K+++A +L +A+YF+ V+EK F+++ LDD++IL+
Sbjct: 209 KKMEQASMQLNFEQAAYFRDQIQAIRAVIEKQFVSNERLDDMDILA 254
>sp|B0UT80|UVRC_HAES2 UvrABC system protein C OS=Haemophilus somnus (strain 2336) GN=uvrC
PE=3 SV=1
Length = 609
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 7 RKLQEAKFELITSEASYFKS-----LTVLEKHFIASPLLDDVNILS 47
+K+++A +L +A+YF+ V+EK F+++ LDD++IL+
Sbjct: 209 KKMEQASMQLNFEQAAYFRDQIQAIRAVIEKQFVSNERLDDMDILA 254
>sp|P91621|SIF1_DROME Protein still life, isoform SIF type 1 OS=Drosophila melanogaster
GN=sif PE=2 SV=2
Length = 2072
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 8 KLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER 67
KL++ EL+ +E +Y K L L +H++ P+ + LS + LFGN+ + +
Sbjct: 1436 KLRKVVMELVDTERTYVKHLNNLLEHYL-EPMKRE-TFLSNAEINALFGNIHEIVTFQRQ 1493
Query: 68 LLAALEQ 74
L LE+
Sbjct: 1494 FLQNLEE 1500
>sp|P91620|SIF2_DROME Protein still life, isoforms C/SIF type 2 OS=Drosophila melanogaster
GN=sif PE=2 SV=2
Length = 2061
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 8 KLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER 67
KL++ EL+ +E +Y K L L +H++ P+ + LS + LFGN+ + +
Sbjct: 1425 KLRKVVMELVDTERTYVKHLNNLLEHYL-EPMKRE-TFLSNAEINALFGNIHEIVTFQRQ 1482
Query: 68 LLAALEQ 74
L LE+
Sbjct: 1483 FLQNLEE 1489
>sp|O94827|PKHG5_HUMAN Pleckstrin homology domain-containing family G member 5 OS=Homo
sapiens GN=PLEKHG5 PE=2 SV=3
Length = 1062
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 10 QEAKFELITSEASYFKSLTV-LEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERL 68
QEA +EL+ +EASY + L V + L + +L + + + LF N+ + + RL
Sbjct: 394 QEAVWELLHTEASYIRKLRVIINLFLCCLLNLQESGLLCEVEAERLFSNIPEIAQLHRRL 453
Query: 69 LAA-----LEQCWQDSILLQ 83
A+ LE+ + LLQ
Sbjct: 454 WASVMAPVLEKARRTRALLQ 473
>sp|Q9Z206|ARHG8_MOUSE Neuroepithelial cell-transforming gene 1 protein OS=Mus musculus
GN=Net1 PE=1 SV=2
Length = 595
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
+L E K QEA +EL E + L + K + P+L ++I+S+ + H+FG++ A
Sbjct: 167 SLTTREIKRQEAIYELSRGEQDLIEDLKLARKAY-HDPMLK-LSIMSEEELTHIFGDLDA 224
Query: 61 VRKCSERLLAAL 72
E LLA +
Sbjct: 225 YIPLHEDLLARI 236
>sp|Q3KR16|PKHG6_HUMAN Pleckstrin homology domain-containing family G member 6 OS=Homo
sapiens GN=PLEKHG6 PE=1 SV=3
Length = 790
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 10 QEAKFELITSEASYFKSLTVLEKHFIASPL-LDDVNILSKNDRKHLFGNVTAV 61
QEA +EL+T+E Y + L ++ A L L V +L + + LFGNV ++
Sbjct: 163 QEALWELLTTELIYVRKLKIMTDLLAAGLLNLQRVGLLMEVSAETLFGNVPSL 215
>sp|Q03E40|SYE_PEDPA Glutamate--tRNA ligase OS=Pediococcus pentosaceus (strain ATCC
25745 / 183-1w) GN=gltX PE=3 SV=1
Length = 495
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 10 QEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILS 47
+EAK EL T +A L LEK F P+ D VNIL+
Sbjct: 403 EEAKEELATDDA--LPVLKALEKQFSDLPVFDTVNILA 438
>sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio rerio GN=trio PE=3 SV=1
Length = 3028
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 14 FELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSER-LLAAL 72
ELI +E Y + L+++ + ++A D V K K +FGN+ + + L L
Sbjct: 1926 LELIETERDYVRDLSLVVEGYMARMREDGVPDDMKGKDKIVFGNIQQIYDWHKDFFLGEL 1985
Query: 73 EQCWQDS 79
E+C +D
Sbjct: 1986 EKCLEDP 1992
>sp|Q6XZF7|DNMBP_HUMAN Dynamin-binding protein OS=Homo sapiens GN=DNMBP PE=1 SV=1
Length = 1577
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 15 ELITSEASYFKSLTV-LEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALE 73
EL+ +E Y + L + +E+ + NI D + LFGN+ V K S++LLAALE
Sbjct: 791 ELLQTERDYIRDLEMCIERIMVPMQQAQVPNI----DFEGLFGNMQMVIKVSKQLLAALE 846
>sp|Q4VAC9|PKHG3_MOUSE Pleckstrin homology domain-containing family G member 3 OS=Mus
musculus GN=Plekhg3 PE=1 SV=2
Length = 1341
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 15 ELITSEASYFKSL-TVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALE 73
E++ +E Y + L +++E + + ++D +L LFGN+ ++ + +LL L+
Sbjct: 100 EIVETERMYVQDLRSIVEDYLLK--IIDTPGLLKPEQVSALFGNIESIYALNSQLLRDLD 157
Query: 74 QCWQDSI 80
C D +
Sbjct: 158 SCNSDPV 164
>sp|Q9NR80|ARHG4_HUMAN Rho guanine nucleotide exchange factor 4 OS=Homo sapiens GN=ARHGEF4
PE=1 SV=3
Length = 690
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 15 ELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 74
E++++E Y K L + + ++ ++ S+ + +FGN+ + +C + + ALEQ
Sbjct: 291 EILSTERDYIKHLRDICEGYVRQ-CRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQ 349
>sp|Q91X46|ARHG3_MOUSE Rho guanine nucleotide exchange factor 3 OS=Mus musculus GN=Arhgef3
PE=1 SV=1
Length = 524
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV 61
L A E K QEA FEL E + L + +K + P+L ++I+++ + +FG + ++
Sbjct: 115 LTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAY-HDPML-KLSIMTEQELNQIFGTLDSL 172
Query: 62 RKCSERLLAAL 72
E LL+ L
Sbjct: 173 IPLHEELLSQL 183
>sp|Q86D96|GPA1_TRIVA Guanine nucleotide-binding protein subunit alpha-1 OS=Trichomonas
vaginalis GN=GA1 PE=3 SV=1
Length = 402
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 38 PLLDDVNILSKNDRKHLFGNVTAVRKCS 65
P+ +D N+L ND +FGN+T K S
Sbjct: 281 PMFEDQNVLRINDSLEIFGNITHQEKFS 308
>sp|Q55E26|GXCB_DICDI Rac guanine nucleotide exchange factor B OS=Dictyostelium
discoideum GN=gxcB PE=2 SV=1
Length = 1198
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 6 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVN----ILSKNDRKHLFGN 57
+ + Q+ E+I +E SY KSL+ + I PLL+ ++ ILS ++ +FGN
Sbjct: 630 DTRRQKVIEEIIATEQSYVKSLSTVYNLLIV-PLLNSLDTNSPILSNDEISSIFGN 684
>sp|Q6TXD4|DNMBP_MOUSE Dynamin-binding protein OS=Mus musculus GN=Dnmbp PE=1 SV=2
Length = 1580
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 15 ELITSEASYFKSLTV-LEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALE 73
EL+ +E Y + L + +E+ + N+ D + LFGN+ V K S++LLAALE
Sbjct: 790 ELLQTERDYIRDLEMCIERVMVPLQQAQVPNV----DFEGLFGNMQTVIKVSKQLLAALE 845
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,169,459
Number of Sequences: 539616
Number of extensions: 810032
Number of successful extensions: 2336
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2308
Number of HSP's gapped (non-prelim): 50
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)