Query psy5779
Match_columns 83
No_of_seqs 101 out of 264
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 17:46:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3523|consensus 100.0 1.2E-29 2.7E-34 197.8 4.8 81 1-83 250-330 (695)
2 KOG3521|consensus 99.6 1.6E-16 3.5E-21 126.0 5.3 72 1-72 170-242 (846)
3 KOG4305|consensus 99.6 2.3E-16 5E-21 129.3 2.7 81 1-83 328-412 (1029)
4 cd00160 RhoGEF Guanine nucleot 99.5 4.9E-14 1.1E-18 93.7 5.1 69 9-79 1-70 (181)
5 KOG3520|consensus 99.4 1.6E-13 3.5E-18 113.5 6.9 79 1-81 383-461 (1167)
6 COG5422 ROM1 RhoGEF, Guanine n 99.4 1E-13 2.3E-18 112.7 3.1 81 1-83 477-561 (1175)
7 smart00325 RhoGEF Guanine nucl 99.4 6.3E-13 1.4E-17 88.3 4.4 66 12-79 1-67 (180)
8 PF00621 RhoGEF: RhoGEF domain 99.2 9.7E-12 2.1E-16 81.6 4.4 66 12-79 1-67 (180)
9 KOG2996|consensus 98.3 8.4E-07 1.8E-11 70.9 5.6 66 7-76 196-261 (865)
10 KOG3518|consensus 98.2 2.1E-06 4.5E-11 65.3 4.6 65 11-75 124-189 (521)
11 KOG3522|consensus 98.2 3.3E-06 7.2E-11 69.2 5.7 65 13-79 5-70 (925)
12 KOG3519|consensus 98.1 6E-06 1.3E-10 67.2 6.5 74 5-79 333-406 (756)
13 KOG4424|consensus 98.1 2.8E-06 6.1E-11 67.4 3.5 63 12-76 70-133 (623)
14 KOG2070|consensus 97.5 0.00021 4.6E-09 56.5 5.9 64 12-77 105-168 (661)
15 KOG0689|consensus 97.3 0.00017 3.7E-09 56.1 2.4 71 7-78 61-133 (448)
16 KOG4240|consensus 96.8 0.0032 7E-08 53.0 5.7 65 9-76 633-703 (1025)
17 KOG3531|consensus 96.2 0.0013 2.9E-08 54.6 -0.0 63 13-77 538-600 (1036)
18 KOG3524|consensus 64.5 13 0.00028 31.3 4.3 61 13-73 389-452 (850)
19 PF06892 Phage_CP76: Phage reg 50.9 11 0.00024 25.5 1.6 39 44-82 115-153 (162)
20 COG0712 AtpH F0F1-type ATP syn 39.9 50 0.0011 22.6 3.6 64 12-75 14-85 (178)
21 PF12210 Hrs_helical: Hepatocy 33.1 41 0.00089 21.3 2.1 53 22-74 2-57 (96)
22 KOG4810|consensus 33.0 33 0.00071 24.5 1.8 18 1-18 176-193 (227)
23 PF14566 PTPlike_phytase: Inos 31.5 59 0.0013 21.2 2.8 36 46-81 16-51 (149)
24 COG4224 Uncharacterized protei 26.3 74 0.0016 19.3 2.3 24 1-30 20-43 (77)
25 PF04783 DUF630: Protein of un 25.0 1.5E+02 0.0032 17.1 4.2 20 12-31 30-49 (60)
26 COG5552 Uncharacterized conser 23.0 53 0.0012 20.1 1.2 22 57-78 48-69 (88)
27 KOG2105|consensus 21.2 1.6E+02 0.0034 22.7 3.7 53 7-59 279-332 (415)
28 PF04484 DUF566: Family of unk 20.2 2.3E+02 0.005 21.2 4.4 32 6-37 204-236 (311)
29 cd08785 CARD_CARD9-like Caspas 20.1 1.9E+02 0.0041 17.5 3.3 60 14-77 2-64 (86)
30 cd01671 CARD Caspase activatio 20.1 81 0.0018 17.8 1.6 35 42-77 24-58 (80)
No 1
>KOG3523|consensus
Probab=99.96 E-value=1.2e-29 Score=197.81 Aligned_cols=81 Identities=53% Similarity=0.786 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhCc
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI 80 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~ 80 (83)
|||++|||+|||+||+||||+||++||+++++|||.+..++ .+|++.|+|+|||||.+|++||+|||.|||+|+++||
T Consensus 250 tls~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~l~--~~Ls~~d~~~LFSni~~V~~~Serfl~dLE~r~e~ni 327 (695)
T KOG3523|consen 250 TLSPEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKELR--STLSASDRHHLFSNIQDVREVSERFLCDLEARLEENI 327 (695)
T ss_pred ccCHHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHHHH--HhcChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc
Confidence 68999999999999999999999999999999999997776 5899999999999999999999999999999999999
Q ss_pred cCC
Q psy5779 81 LLQ 83 (83)
Q Consensus 81 ~i~ 83 (83)
+|.
T Consensus 328 ~i~ 330 (695)
T KOG3523|consen 328 FID 330 (695)
T ss_pred hhh
Confidence 873
No 2
>KOG3521|consensus
Probab=99.64 E-value=1.6e-16 Score=125.98 Aligned_cols=72 Identities=26% Similarity=0.388 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCc-CCCCCCCCccccccccccchhHHHHHHHHHHHHH
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASP-LLDDVNILSKNDRKHLFGNVTAVRKCSERLLAAL 72 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~-~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~L 72 (83)
+||++++|+|||||||+|||..|+|.|.++++.|..|. .+|+.|+|...+...||+||..++.+|.+|+...
T Consensus 170 slS~~~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~~~n~slW~~~ 242 (846)
T KOG3521|consen 170 SLSDKSCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDVEAERLFSNVPTLFNVNRSLWLQV 242 (846)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhchHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999986 7899999999999999999999999999998753
No 3
>KOG4305|consensus
Probab=99.61 E-value=2.3e-16 Score=129.31 Aligned_cols=81 Identities=30% Similarity=0.431 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCcccc----ccccccchhHHHHHHHHHHHHHHHhh
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKND----RKHLFGNVTAVRKCSERLLAALEQCW 76 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~----~~~LFsNi~~v~~~s~~fl~~Le~r~ 76 (83)
+||++|+||||+|||+|.||+.|+++|+++++.|+++ |-+++++++.+ ...+|.|+.+++.+|++||.+|..|.
T Consensus 328 ~ls~rEikRQe~I~Eli~tE~d~v~dLel~re~y~kp--l~~S~iipE~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r~ 405 (1029)
T KOG4305|consen 328 SLSPREIKRQEAIFELIYTEEDFVADLELAREIYRKP--LLESSIIPEQERAEFIAHVFGNIEEIIQLNEKLLKALRVRQ 405 (1029)
T ss_pred hcCHHHhhhhheeEEEEeehhHHHHHHHHHHHHHhCh--HhhhccCccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4899999999999999999999999999999999999 77778999999 89999999999999999999999999
Q ss_pred hhCccCC
Q psy5779 77 QDSILLQ 83 (83)
Q Consensus 77 ~~~~~i~ 83 (83)
+.+.+|+
T Consensus 406 k~~G~V~ 412 (1029)
T KOG4305|consen 406 KLSGVVE 412 (1029)
T ss_pred ccCCccc
Confidence 9887653
No 4
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.48 E-value=4.9e-14 Score=93.70 Aligned_cols=69 Identities=29% Similarity=0.448 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCC-CccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779 9 LQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNI-LSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS 79 (83)
Q Consensus 9 ~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~-l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~ 79 (83)
||++++|+++||++|+++|+++.+.|+.+ +.+.+. ++..+.+.+|+|+.+++.+|+.|+.+|+.+..+.
T Consensus 1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~~--l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~ 70 (181)
T cd00160 1 RQEVIKELLQTERNYVRDLKLLVEVFLKP--LDKELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEW 70 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999999999998 654444 7889999999999999999999999999987653
No 5
>KOG3520|consensus
Probab=99.45 E-value=1.6e-13 Score=113.53 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhCc
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI 80 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~ 80 (83)
++++.+.||||+|+||+.||+.+||.|.|+..+|+.+ |...++++..+...||+|+++++++|..|++.|.+|.+++.
T Consensus 383 ~lk~~~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~--m~~e~~~~~~~l~~LFP~LdeL~eiH~~f~~~lk~rr~e~~ 460 (1167)
T KOG3520|consen 383 GLKKDVVKRQEVIYELFQTERHHVRTLKILDRVFYQP--MMEELLFPQEELNKLFPCLDELIEIHSSFLQRLKERRKESL 460 (1167)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4688999999999999999999999999999999999 88778999999999999999999999999999999988886
Q ss_pred c
Q psy5779 81 L 81 (83)
Q Consensus 81 ~ 81 (83)
+
T Consensus 461 ~ 461 (1167)
T KOG3520|consen 461 V 461 (1167)
T ss_pred c
Confidence 5
No 6
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.41 E-value=1e-13 Score=112.66 Aligned_cols=81 Identities=32% Similarity=0.471 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCcccc----ccccccchhHHHHHHHHHHHHHHHhh
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKND----RKHLFGNVTAVRKCSERLLAALEQCW 76 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~----~~~LFsNi~~v~~~s~~fl~~Le~r~ 76 (83)
+++.+|+||||||+|+++||+.||++|+++.|.|+++ |.++.++++.. .+..|.||.+|..+|.+|+.+|..|+
T Consensus 477 sl~~qe~kRqe~I~evi~ter~FVk~le~lRD~~~K~--L~~sn~Ip~n~r~~Fik~vf~~i~~i~avn~k~~~AL~~rQ 554 (1175)
T COG5422 477 SLPKQEIKRQEAIYEVIYTERDFVKDLEYLRDTWIKP--LEESNIIPENARRNFIKHVFANINEIYAVNSKLLKALTNRQ 554 (1175)
T ss_pred hCcHHHHhhhhhhhheeeeccchhhhhHHHHHHHHHH--HHHcCcCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcc
Confidence 4789999999999999999999999999999999999 77677887774 47899999999999999999999999
Q ss_pred hhCccCC
Q psy5779 77 QDSILLQ 83 (83)
Q Consensus 77 ~~~~~i~ 83 (83)
--.|+|+
T Consensus 555 ~lsPiv~ 561 (1175)
T COG5422 555 CLSPIVN 561 (1175)
T ss_pred ccccccc
Confidence 8887763
No 7
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.37 E-value=6.3e-13 Score=88.27 Aligned_cols=66 Identities=27% Similarity=0.457 Sum_probs=60.2
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCC-CCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779 12 AKFELITSEASYFKSLTVLEKHFIASPLLDDVN-ILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS 79 (83)
Q Consensus 12 ai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~-~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~ 79 (83)
+++|+++||++|+++|+++.+.|+.+ +...+ +++..+.+.+|+|+.+++.+|+.|+.+|+.+..+.
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~~--l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~ 67 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLKP--LKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEW 67 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH--HHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999999998 65544 78999999999999999999999999999998764
No 8
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.24 E-value=9.7e-12 Score=81.61 Aligned_cols=66 Identities=32% Similarity=0.515 Sum_probs=59.5
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHhhcCcCCCC-CCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779 12 AKFELITSEASYFKSLTVLEKHFIASPLLDD-VNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS 79 (83)
Q Consensus 12 ai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~-~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~ 79 (83)
.++||+.||.+|+++|+++++.|+.+ +.. .+.++..+...+|+|++++..+|+.|+.+|+.+.++.
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~~--l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~~~ 67 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLKP--LRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMKEW 67 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH--HHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHHhh
Confidence 47999999999999999999999998 554 5678899999999999999999999999999986443
No 9
>KOG2996|consensus
Probab=98.35 E-value=8.4e-07 Score=70.95 Aligned_cols=66 Identities=27% Similarity=0.362 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhh
Q psy5779 7 RKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCW 76 (83)
Q Consensus 7 ~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~ 76 (83)
-||--.+.|+-.||+.|.+.|.-+..+||.| |+ ++|++.|...+|.||+++..++..||.+++-..
T Consensus 196 dkRncClrEi~~TE~kY~~tL~sI~k~f~~P--Lk--~~l~~ad~~ivFiNieel~klHt~ll~ei~~sv 261 (865)
T KOG2996|consen 196 DKRNCCLREIQQTEEKYTQTLESIEKTFMEP--LK--RFLPPADYNIVFINIEELNKLHTALLAEIEYSV 261 (865)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--hcCChhhhheeEecHHHHHHHHHHHHHHhHHHh
Confidence 3555689999999999999999999999999 87 689999999999999999999999999998653
No 10
>KOG3518|consensus
Probab=98.20 E-value=2.1e-06 Score=65.31 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=54.5
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHhhcCcC-CCCCCCCccccccccccchhHHHHHHHHHHHHHHHh
Q psy5779 11 EAKFELITSEASYFKSLTVLEKHFIASPL-LDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQC 75 (83)
Q Consensus 11 Eai~Eli~sE~sY~~sL~vl~~~f~~~~~-l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r 75 (83)
...-|++.||+.|+.+|+.+++.|+.+.. -++.--++-..+..||+||++|...|..++++|++.
T Consensus 124 riaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ldaa 189 (521)
T KOG3518|consen 124 RIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFAFNKELLNDLDAA 189 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhc
Confidence 35679999999999999999999998831 223333566788999999999999999999999875
No 11
>KOG3522|consensus
Probab=98.18 E-value=3.3e-06 Score=69.24 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=57.2
Q ss_pred HHHHHHhHHHHHHhHHHHHHHhhcCcCCCC-CCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779 13 KFELITSEASYFKSLTVLEKHFIASPLLDD-VNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS 79 (83)
Q Consensus 13 i~Eli~sE~sY~~sL~vl~~~f~~~~~l~~-~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~ 79 (83)
.-+|+.+|.+|+.+|.-+++-|+++ |.+ +.++.+.+++.+|-||++++++++.|+.+|+.|.+..
T Consensus 5 ~~~l~~~Eq~yv~sL~t~vd~y~qp--L~~~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w 70 (925)
T KOG3522|consen 5 LLQLIDREQSYVESLHTGVDRYVQP--LKERKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQW 70 (925)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc--ccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhh
Confidence 4579999999999999999999999 543 3455668999999999999999999999999997754
No 12
>KOG3519|consensus
Probab=98.14 E-value=6e-06 Score=67.16 Aligned_cols=74 Identities=26% Similarity=0.358 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779 5 GERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS 79 (83)
Q Consensus 5 ~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~ 79 (83)
...++.-+|.|++.||+.|+++|+.+...|+.+- .+...-+.....+.+|+||+++..+...|+++|+.....+
T Consensus 333 ~~~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~~~-~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~~~~~~ 406 (756)
T KOG3519|consen 333 LDKKRTKVIKELLDTEKNYVKDLNALCEGYLPPQ-NKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQQINPE 406 (756)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-hhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHHhcchh
Confidence 3567778999999999999999999999998872 1111246788899999999999999999999999987654
No 13
>KOG4424|consensus
Probab=98.09 E-value=2.8e-06 Score=67.36 Aligned_cols=63 Identities=25% Similarity=0.429 Sum_probs=54.0
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHH-HHHHHHhh
Q psy5779 12 AKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERL-LAALEQCW 76 (83)
Q Consensus 12 ai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~f-l~~Le~r~ 76 (83)
++-|++.||++|+..|.+|.++|.+...+. ..+++..++.||+||-.|...+..| |..|+.|.
T Consensus 70 iaqEll~tE~~Yv~~L~lLd~~F~~~L~~~--~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~ 133 (623)
T KOG4424|consen 70 IAQELLDTERTYVKRLHLLDQVFCRRLLEE--ASIPADVITGLFGNISSIHNFHGQFLLPELEKRI 133 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH
Confidence 899999999999999999999999984333 4789999999999999999999555 55666664
No 14
>KOG2070|consensus
Probab=97.55 E-value=0.00021 Score=56.52 Aligned_cols=64 Identities=27% Similarity=0.435 Sum_probs=60.3
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779 12 AKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ 77 (83)
Q Consensus 12 ai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~ 77 (83)
++-.+|.||+.|+++|+-+...|+.| ++.+.+|+..+...|.+|.++|+...+.++..||.+.+
T Consensus 105 VLk~~lesEkey~~eLq~lL~t~L~P--lq~s~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~~ 168 (661)
T KOG2070|consen 105 VLKNILESEKEYSKELQTLLSTYLRP--LQTSEILSSAEYSYLMGNFEEICTFQQDLVQQLEECTK 168 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccchHHHHHHhcchHHhHhHHHHHHHHHHHhhc
Confidence 57789999999999999999999999 88888999999999999999999999999999998863
No 15
>KOG0689|consensus
Probab=97.27 E-value=0.00017 Score=56.06 Aligned_cols=71 Identities=28% Similarity=0.428 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCC-CCCccccccccccchhHHHHHHHHH-HHHHHHhhhh
Q psy5779 7 RKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDV-NILSKNDRKHLFGNVTAVRKCSERL-LAALEQCWQD 78 (83)
Q Consensus 7 ~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~-~~l~~~~~~~LFsNi~~v~~~s~~f-l~~Le~r~~~ 78 (83)
+|+.-++-|++.||.+|+++|...+.+|+.+..-.+- .-|.. ..+.+|+||..+++++..+ +.+++...++
T Consensus 61 ~k~~~v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~~lp~~lrg-~~~iifgni~~i~~~h~~~fl~e~e~~~r~ 133 (448)
T KOG0689|consen 61 KKRSFVLDELIATEVDYVKDLKSVVENYIELLDAEDLPEDLRG-KDKIIFGNIKEIYEFHKKEFLPELERCERD 133 (448)
T ss_pred hhhHHHHHHHHHHHHhhhhccccccccccccccccCCChhccC-CceeeechHHHHHHhhcccCcchHHHhhhC
Confidence 4566699999999999999999999999987321110 01111 2688999999999999977 8888776543
No 16
>KOG4240|consensus
Probab=96.76 E-value=0.0032 Score=53.04 Aligned_cols=65 Identities=23% Similarity=0.444 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHhhc---CcCCCC--CCCCccccccccccchhHHHHHHH-HHHHHHHHhh
Q psy5779 9 LQEAKFELITSEASYFKSLTVLEKHFIA---SPLLDD--VNILSKNDRKHLFGNVTAVRKCSE-RLLAALEQCW 76 (83)
Q Consensus 9 ~QEai~Eli~sE~sY~~sL~vl~~~f~~---~~~l~~--~~~l~~~~~~~LFsNi~~v~~~s~-~fl~~Le~r~ 76 (83)
.-..+.|+|.||+.|+++|.=+.+.+.. ++ +.+ .++|. -.+.+|+|+.+|.+.+. .||..||...
T Consensus 633 ~~~~m~ellqterayv~~L~~~l~~y~~e~d~~-~~~i~~~~Ln--k~~~ifgnmeeiy~fhn~~~L~eLe~y~ 703 (1025)
T KOG4240|consen 633 KRHVMRELLQTERAYVRDLEECLEGYLAEMDSP-MKEILPPLLN--KKEIIFGNMEEIYEFHNDIFLSELEKYE 703 (1025)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhhccccccc--hHHHHHhhHHHHHHHHhhHHHHHhhhhc
Confidence 3457899999999999999998888774 22 221 23444 56889999999999976 7999998753
No 17
>KOG3531|consensus
Probab=96.16 E-value=0.0013 Score=54.62 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=51.9
Q ss_pred HHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779 13 KFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ 77 (83)
Q Consensus 13 i~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~ 77 (83)
..|+..||++|.++|.|+..-|... +-.....+...+..+|.|+..+.+.++.||+++|+|+.
T Consensus 538 ~kel~~tERty~kdleV~tt~Frst--~v~~dam~~~~~s~l~~~~~pl~k~h~~fLk~ieeria 600 (1036)
T KOG3531|consen 538 VKELSDTERTYLKDLEVITTWFRST--VVKEDAMPNALKSLLFHNSTPLTKFHEGFLKEIEERIA 600 (1036)
T ss_pred ecccccccccchhccceeeeeecce--eecCcccccchhhhhccCCChhhHHHHHHHHHHHHHHH
Confidence 5689999999999999998666554 22223567778889999999999999999999999964
No 18
>KOG3524|consensus
Probab=64.46 E-value=13 Score=31.33 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=47.2
Q ss_pred HHHHHHhHHHHHHhHHHHHHHhhcCcC---CCCCCCCccccccccccchhHHHHHHHHHHHHHH
Q psy5779 13 KFELITSEASYFKSLTVLEKHFIASPL---LDDVNILSKNDRKHLFGNVTAVRKCSERLLAALE 73 (83)
Q Consensus 13 i~Eli~sE~sY~~sL~vl~~~f~~~~~---l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le 73 (83)
.-++-++|..|+.=|+..+..|....+ ....+++...++..+|+|.++|..++..-.+.|+
T Consensus 389 ~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~ 452 (850)
T KOG3524|consen 389 KEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLL 452 (850)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHH
Confidence 345678888999999988888887641 1234789999999999999999999887655544
No 19
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=50.93 E-value=11 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=36.1
Q ss_pred CCCccccccccccchhHHHHHHHHHHHHHHHhhhhCccC
Q psy5779 44 NILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSILL 82 (83)
Q Consensus 44 ~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~~i 82 (83)
|-++..+++.+...+.+.+..-.-+..++|.|.+.+|++
T Consensus 115 grit~~er~~i~~~a~~ai~~l~ll~~~ve~R~~~~p~~ 153 (162)
T PF06892_consen 115 GRITRSERNRIIKEANAAIRSLALLINDVEARTQANPAL 153 (162)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHH
Confidence 678999999999999999999999999999999988864
No 20
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=39.85 E-value=50 Score=22.57 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=46.1
Q ss_pred HHHHHHH---hHHHHHHhHHHHHHHhhcCcCCC---CCCCCccccccccccchhHHH--HHHHHHHHHHHHh
Q psy5779 12 AKFELIT---SEASYFKSLTVLEKHFIASPLLD---DVNILSKNDRKHLFGNVTAVR--KCSERLLAALEQC 75 (83)
Q Consensus 12 ai~Eli~---sE~sY~~sL~vl~~~f~~~~~l~---~~~~l~~~~~~~LFsNi~~v~--~~s~~fl~~Le~r 75 (83)
|+||+.. +...|...|..+...|-.+|.+. +++.++..++..+|..+.+-. +.-.+|+.=|-.+
T Consensus 14 ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~~~~~~~~nfL~ll~en 85 (178)
T COG0712 14 ALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKKIGDPLLQNFLRLLAEN 85 (178)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Confidence 8888888 67779999999999998886544 467788888877666664433 5666776665443
No 21
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=33.07 E-value=41 Score=21.25 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=32.8
Q ss_pred HHHHhHHHHHHHhhcC---cCCCCCCCCccccccccccchhHHHHHHHHHHHHHHH
Q psy5779 22 SYFKSLTVLEKHFIAS---PLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 74 (83)
Q Consensus 22 sY~~sL~vl~~~f~~~---~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~ 74 (83)
-++.+|+--++.|.+- ...++.++....-...||-|+.....-=-+....++.
T Consensus 2 ef~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee 57 (96)
T PF12210_consen 2 EFCNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEE 57 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788788888754 2234566777777889998887765544444455443
No 22
>KOG4810|consensus
Probab=32.95 E-value=33 Score=24.54 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy5779 1 TLDAGERKLQEAKFELIT 18 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~ 18 (83)
|+.|+|+|-|-+++++|-
T Consensus 176 t~npKeIKIqm~ll~~IL 193 (227)
T KOG4810|consen 176 TTNPKEIKIQMNLLELIL 193 (227)
T ss_pred eecchhHhHHHHHHHHHH
Confidence 467899999999999873
No 23
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=31.54 E-value=59 Score=21.24 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=30.7
Q ss_pred CccccccccccchhHHHHHHHHHHHHHHHhhhhCcc
Q psy5779 46 LSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSIL 81 (83)
Q Consensus 46 l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~~ 81 (83)
.+-.+......|+.++-+++..-+..+|.|++.+++
T Consensus 16 ~s~r~~~~~~~~~~~~~g~~~~~~e~~E~~Lk~di~ 51 (149)
T PF14566_consen 16 YSWREPDNPANNIKSYPGISADEVEQLEERLKEDIL 51 (149)
T ss_dssp EEEECGGGTTTTTHHHHHHHHHHHHHHHTHCCCCCE
T ss_pred eeecccCCcccccccccCCCHHHHHHHHHHHHHHHH
Confidence 355677788899999999999999999999998864
No 24
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.30 E-value=74 Score=19.29 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVL 30 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl 30 (83)
+||.+|++.|++... .|+.+..--
T Consensus 20 gLTeeEk~eQ~~LR~------eYl~~fr~~ 43 (77)
T COG4224 20 GLTEEEKKEQAKLRR------EYLESFRGQ 43 (77)
T ss_pred CCCHHHHHHHHHHHH------HHHHHHHHH
Confidence 489999999998763 577666533
No 25
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=24.99 E-value=1.5e+02 Score=17.06 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHhHHHHH
Q psy5779 12 AKFELITSEASYFKSLTVLE 31 (83)
Q Consensus 12 ai~Eli~sE~sY~~sL~vl~ 31 (83)
+-+.+..+-.+|++||.-+-
T Consensus 30 ~R~~lAaaH~aY~~SLr~~g 49 (60)
T PF04783_consen 30 ARYALAAAHAAYIQSLRNVG 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999774
No 26
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=23.04 E-value=53 Score=20.09 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhh
Q psy5779 57 NVTAVRKCSERLLAALEQCWQD 78 (83)
Q Consensus 57 Ni~~v~~~s~~fl~~Le~r~~~ 78 (83)
-+.+|-.+..++|++|+-|+++
T Consensus 48 AV~~iaA~areLLDaLet~q~P 69 (88)
T COG5552 48 AVAEIAATARELLDALETRQQP 69 (88)
T ss_pred HHHHHHHHHHHHHHhccccCCC
Confidence 3578889999999999988765
No 27
>KOG2105|consensus
Probab=21.24 E-value=1.6e+02 Score=22.74 Aligned_cols=53 Identities=26% Similarity=0.303 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHh-hcCcCCCCCCCCccccccccccchh
Q psy5779 7 RKLQEAKFELITSEASYFKSLTVLEKHF-IASPLLDDVNILSKNDRKHLFGNVT 59 (83)
Q Consensus 7 ~k~QEai~Eli~sE~sY~~sL~vl~~~f-~~~~~l~~~~~l~~~~~~~LFsNi~ 59 (83)
+|+|..+--|-..+-.++|+|.+-..|= +++|...+--++...+.|.-|+||.
T Consensus 279 kk~qnstk~LqKnn~~~lr~LA~~iahsL~Ns~d~gG~vi~~~~e~~sE~~N~i 332 (415)
T KOG2105|consen 279 KKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGGVVILHRKEGDSEFMNII 332 (415)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcCcCceEEeehhhccHHHHHHH
Confidence 5677778888888999999999886554 4554443333566677788888873
No 28
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=20.21 E-value=2.3e+02 Score=21.15 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=25.7
Q ss_pred HHHHHH-HHHHHHHhHHHHHHhHHHHHHHhhcC
Q psy5779 6 ERKLQE-AKFELITSEASYFKSLTVLEKHFIAS 37 (83)
Q Consensus 6 E~k~QE-ai~Eli~sE~sY~~sL~vl~~~f~~~ 37 (83)
|+.+|+ .++.|+.....|+.+|..+.+.+..+
T Consensus 204 q~~kq~~KL~~IL~~Q~~~Le~W~~le~~h~~s 236 (311)
T PF04484_consen 204 QRLKQELKLNSILKSQMPYLEEWAALEREHSSS 236 (311)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 556666 68999999999999999997665543
No 29
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=20.11 E-value=1.9e+02 Score=17.54 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHhHHHHH-HhHHHHHHHhhcCcCCCCCCCCccccccccccchhHH--HHHHHHHHHHHHHhhh
Q psy5779 14 FELITSEASYF-KSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAV--RKCSERLLAALEQCWQ 77 (83)
Q Consensus 14 ~Eli~sE~sY~-~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v--~~~s~~fl~~Le~r~~ 77 (83)
||++..-+-++ ++|.+ +..+.. |.+.++++..+...+.+--... ..=+..+++.|+.|..
T Consensus 2 ~~~L~~~R~~L~~~l~~--~~l~d~--L~q~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~rG~ 64 (86)
T cd08785 2 WEALEGMRHRLTRKINP--SRLTPY--LRQCKVLDEQDEEEVLSSPRLPIRANRTGRLLDILATRGK 64 (86)
T ss_pred HHHHHHHHHHHHHHhhH--HHHHHH--HHhcCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHhcCc
Confidence 55555555544 22221 222222 4445788888887777644322 2334677777777643
No 30
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.09 E-value=81 Score=17.80 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=23.0
Q ss_pred CCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779 42 DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ 77 (83)
Q Consensus 42 ~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~ 77 (83)
+.++++..+.+.+=+.-. --.-+.+|++.|..|..
T Consensus 24 ~~~vlt~~e~~~i~~~~~-~~~k~~~Lld~l~~kg~ 58 (80)
T cd01671 24 SDGVLTEEEYEKIRSEST-RQDKARKLLDILPRKGP 58 (80)
T ss_pred HcCCCCHHHHHHHHcCCC-hHHHHHHHHHHHHhcCh
Confidence 346788777766644443 56666778888877654
Done!