Query psy5779
Match_columns 83
No_of_seqs 101 out of 264
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:46:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xcg_A PDZ-rhogef, RHO guanine 99.8 8.4E-19 2.9E-23 127.2 6.9 80 1-82 14-93 (368)
2 2z0q_A XPLN, RHO guanine nucle 99.8 9.1E-19 3.1E-23 126.3 6.4 77 1-79 12-88 (346)
3 3t06_A PDZ-rhogef, RHO guanine 99.7 1.9E-18 6.7E-23 127.2 7.4 80 1-82 56-135 (418)
4 3jv3_A Intersectin-1; SH3 doma 99.7 1.7E-18 5.8E-23 121.4 6.3 75 1-77 75-149 (283)
5 3p6a_A RHO guanine nucleotide 99.7 2.6E-18 8.9E-23 124.8 5.6 77 1-79 20-96 (377)
6 1by1_A Protein (PIX); RHO-GTPa 99.7 1.3E-17 4.3E-22 113.8 6.3 75 3-79 8-82 (209)
7 1txd_A RHO guanine nucleotide 99.7 1.7E-17 5.9E-22 121.2 5.6 73 1-76 17-89 (385)
8 3odw_A RHO guanine nucleotide 99.7 3.1E-17 1.1E-21 125.7 6.1 76 1-78 173-248 (536)
9 1foe_A T-lymphoma invasion and 99.7 4.9E-17 1.7E-21 118.5 6.9 75 1-78 5-79 (377)
10 3jzy_A Intersectin 2; C2 domai 99.7 6.3E-18 2.1E-22 126.3 0.0 75 1-77 20-94 (510)
11 2dfk_A Collybistin II; DH doma 99.7 1.2E-16 4E-21 118.2 5.9 76 1-78 34-110 (402)
12 2vrw_B P95VAV, VAV1, proto-onc 99.6 3.8E-16 1.3E-20 114.9 6.1 72 3-78 20-91 (406)
13 2pz1_A RHO guanine nucleotide 99.6 3.4E-16 1.1E-20 117.0 5.8 75 2-78 112-187 (466)
14 1kz7_A Guanine nucleotide exch 99.6 9.3E-16 3.2E-20 111.5 5.9 75 2-78 5-86 (353)
15 1nty_A Triple functional domai 99.6 3.2E-15 1.1E-19 106.7 5.1 72 4-77 5-81 (311)
16 3ky9_A Proto-oncogene VAV; cal 99.5 7.2E-15 2.5E-19 113.0 4.7 71 4-78 193-263 (587)
17 2rgn_B RHOA/RAC/CDC42 exchange 99.5 2.5E-14 8.7E-19 104.0 4.9 72 5-78 9-83 (354)
18 3mpx_A FYVE, rhogef and PH dom 99.5 1.6E-14 5.4E-19 106.6 3.1 75 4-78 18-99 (434)
19 1dbh_A Protein (human SOS 1); 99.4 4.5E-14 1.5E-18 102.0 4.2 67 9-77 4-71 (354)
20 3ksy_A SOS-1, SON of sevenless 99.4 5.9E-14 2E-18 114.4 2.3 71 6-78 198-269 (1049)
21 2bsj_A Chaperone protein SYCT; 69.5 4 0.00014 25.9 2.9 23 56-78 95-117 (133)
22 4gou_A EHRGS-rhogef; RGS domai 54.4 7.9 0.00027 28.5 2.5 61 13-76 192-252 (518)
23 3f1i_H Hepatocyte growth facto 32.9 33 0.0011 20.9 2.5 53 22-74 4-59 (98)
24 2kbt_A Chimera of proto-oncoge 22.9 18 0.00061 22.7 0.0 27 5-31 103-129 (142)
25 2wx3_A MRNA-decapping enzyme 1 22.4 86 0.0029 16.8 2.7 29 6-37 13-41 (51)
26 2jvd_A UPF0291 protein YNZC; s 21.7 76 0.0026 17.2 2.5 13 1-13 21-33 (54)
27 3bhp_A UPF0291 protein YNZC; N 21.4 76 0.0026 17.5 2.5 15 1-15 21-35 (60)
28 3t98_A Nuclear pore complex pr 20.7 1.1E+02 0.0037 16.3 3.2 22 8-29 29-50 (51)
No 1
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=99.76 E-value=8.4e-19 Score=127.21 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhCc
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI 80 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~ 80 (83)
+|+++|+|||++++||++||++|+++|+++.++|+.+ |+..+++++.+.+.||+||.+|+.+|+.|+.+|+.+.++++
T Consensus 14 ~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~--l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~ 91 (368)
T 1xcg_A 14 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGP 91 (368)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999999999999999998 76667899999999999999999999999999999988765
Q ss_pred cC
Q psy5779 81 LL 82 (83)
Q Consensus 81 ~i 82 (83)
.+
T Consensus 92 ~~ 93 (368)
T 1xcg_A 92 II 93 (368)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 2
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.75 E-value=9.1e-19 Score=126.32 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS 79 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~ 79 (83)
+|+++|+|||++++||++||++|+++|++++++|+.+ +...+++++.+.+.||+||++|+.+|+.|+.+|+.|.+++
T Consensus 12 ~l~~~~~kR~~vi~Eli~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~ 88 (346)
T 2z0q_A 12 VLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDP--MLKLSIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPD 88 (346)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHTTSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCTT
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHhccC
Confidence 5899999999999999999999999999999999998 6655789999999999999999999999999999998754
No 3
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=127.25 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhCc
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDSI 80 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~~ 80 (83)
+|+++|+|||++++|||+||++|+++|++++++|+.+ ++..++++..+.+.||+||.+|+.+|+.|+.+|+.+.++..
T Consensus 56 ~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~ 133 (418)
T 3t06_A 56 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGP 133 (418)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHGGGCS
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5799999999999999999999999999999999998 76667899999999999999999999999999999988765
Q ss_pred cC
Q psy5779 81 LL 82 (83)
Q Consensus 81 ~i 82 (83)
.+
T Consensus 134 ~~ 135 (418)
T 3t06_A 134 II 135 (418)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 4
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.74 E-value=1.7e-18 Score=121.43 Aligned_cols=75 Identities=28% Similarity=0.404 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ 77 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~ 77 (83)
++++.|+|||++++||++||++|+++|+++.++|+.+ +...++++..+.+.||+|+.+|+.+|+.|+.+|+.|..
T Consensus 75 ~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~~~ 149 (283)
T 3jv3_A 75 MLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKP--LTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKK 149 (283)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH--HHTTCSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHhh--ccccCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999998 66667899999999999999999999999999998875
No 5
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.73 E-value=2.6e-18 Score=124.80 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS 79 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~ 79 (83)
+++++|+|||++++||++||++|+++|++++++|+.+ +...++++..+.+.||+||.+|+.+|+.|+.+|+.|..+.
T Consensus 20 ~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~ 96 (377)
T 3p6a_A 20 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQES 96 (377)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHHTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999998 6666789999999999999999999999999999887654
No 6
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.71 E-value=1.3e-17 Score=113.75 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhhC
Q psy5779 3 DAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQDS 79 (83)
Q Consensus 3 s~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~~ 79 (83)
...+++||++++||++||++|+++|+++.++|+.+ ++..++++..+.+.||+||.+|+.+|+.|+.+|+.+.+..
T Consensus 8 ~~~~~~R~~vi~ELi~TE~~Yv~~L~~l~~~y~~p--l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~ 82 (209)
T 1by1_A 8 AINKSYYNVVLQNILETENEYSKELQTVLSTYLRP--LQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLP 82 (209)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTTSSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567899999999999999999999999999999 6666789999999999999999999999999999998754
No 7
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.69 E-value=1.7e-17 Score=121.25 Aligned_cols=73 Identities=25% Similarity=0.288 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhh
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCW 76 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~ 76 (83)
+|+++|+|||++++||++||++|+++|++++++|+.+ |...++++..+.+.||+||.+|+.+| .||.+|+.+.
T Consensus 17 ~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~--l~~~~~l~~~~~~~iF~ni~~I~~~h-~fL~~l~~~~ 89 (385)
T 1txd_A 17 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQR--VSREGILSPSELRKIFSNLEDILQLH-IGLNEQMKAV 89 (385)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHHTCSCHHHHHHHHTTHHHHHHHH-HHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHH
Confidence 5899999999999999999999999999999999998 66567899999999999999999999 9999999864
No 8
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.68 E-value=3.1e-17 Score=125.68 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD 78 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~ 78 (83)
+|+++|+|||++|+|||+||++|+++|++++++|+.+ |...++++..+.+.||+||.+|+.+|+.||.+|+.|..+
T Consensus 173 ~l~~~e~kRq~vi~ELi~TE~~YV~~L~~l~~~y~~p--l~~~~~l~~~~~~~IF~nie~I~~~h~~fL~~L~~~~~~ 248 (536)
T 3odw_A 173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQP--MAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQE 248 (536)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHTTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999998 665678999999999999999999999999999998765
No 9
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.68 E-value=4.9e-17 Score=118.54 Aligned_cols=75 Identities=27% Similarity=0.447 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD 78 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~ 78 (83)
+||+ +.|||++++||++||++|+++|+++.++|+.+ |+..++++..+.+.||+||.+|+.+|..|+.+|+.+.+.
T Consensus 5 ~ls~-~~kr~~vi~Eli~TE~~Yv~~L~~l~~~y~~p--l~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~ 79 (377)
T 1foe_A 5 QLSD-ADKLRKVICELLETERTYVKDLNCLMERYLKP--LQKETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRL 79 (377)
T ss_dssp CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHTSSSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 4675 77999999999999999999999999999998 665578999999999999999999999999999998764
No 10
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.66 E-value=6.3e-18 Score=126.29 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ 77 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~ 77 (83)
+||++|+|||++|+||++||++|+++|+++.++|+.+ +.+.++++..+.+.||+||++|+.+|+.|+.+|+.|.+
T Consensus 20 ~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~ 94 (510)
T 3jzy_A 20 TMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKR--MAESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKK 94 (510)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999998 77678899999999999999999999999999998865
No 11
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=99.65 E-value=1.2e-16 Score=118.16 Aligned_cols=76 Identities=17% Similarity=0.356 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCC-CCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD-DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD 78 (83)
Q Consensus 1 ~ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~-~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~ 78 (83)
+++++++|||++++||++||++|+++|+++.++|+.+ +. ..++++..+.+.||+||.+|+.+|..|+.+|+.|...
T Consensus 34 ~~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~p--l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~ 110 (402)
T 2dfk_A 34 PLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQ--CRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNN 110 (402)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCS
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCcCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHcc
Confidence 4788999999999999999999999999999999988 53 3468899999999999999999999999999999753
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.62 E-value=3.8e-16 Score=114.94 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779 3 DAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD 78 (83)
Q Consensus 3 s~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~ 78 (83)
.++++|||++++||++||++|+++|++++++|+.+ |+ .++++.+.+.||+||++|+.+|+.|+.+|+.|..+
T Consensus 20 ~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~--l~--~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~ 91 (406)
T 2vrw_B 20 MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKP--LQ--RFLKPQDMETIFVNIEELFSVHTHFLKELKDALAG 91 (406)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HT--TTSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HhCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999998 65 37899999999999999999999999999999864
No 13
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.62 E-value=3.4e-16 Score=116.96 Aligned_cols=75 Identities=19% Similarity=0.438 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCC-CCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLD-DVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD 78 (83)
Q Consensus 2 ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~-~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~ 78 (83)
++++++|||++++||++||++|+++|+++.++|+.+ +. ..++++..+.+.||+||.+|+.+|..|+.+|+.|.++
T Consensus 112 ~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~~--l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~ 187 (466)
T 2pz1_A 112 QSSKDQMRTNVINEILSTERDYIKHLRDICEGYVRQ--CRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNR 187 (466)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCS
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcc
Confidence 578899999999999999999999999999999987 43 3468899999999999999999999999999999763
No 14
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.60 E-value=9.3e-16 Score=111.54 Aligned_cols=75 Identities=23% Similarity=0.386 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCC---CCCcc---ccccccccchhHHHHHHH-HHHHHHHH
Q psy5779 2 LDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDV---NILSK---NDRKHLFGNVTAVRKCSE-RLLAALEQ 74 (83)
Q Consensus 2 ls~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~---~~l~~---~~~~~LFsNi~~v~~~s~-~fl~~Le~ 74 (83)
+++.++|||++++||++||++|+++|++++++|+.+ |.+. +++|. .+.+.||+||++|+.+|. .|+.+|+.
T Consensus 5 ~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~p--l~~~~~~~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le~ 82 (353)
T 1kz7_A 5 EESLAILRRHVMNELLDTERAYVEELLCVLEGYAAE--MDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELES 82 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG--GGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccccCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998 5432 25665 478999999999999996 89999999
Q ss_pred hhhh
Q psy5779 75 CWQD 78 (83)
Q Consensus 75 r~~~ 78 (83)
|.+.
T Consensus 83 ~~~~ 86 (353)
T 1kz7_A 83 CIDC 86 (353)
T ss_dssp TTTC
T ss_pred HhcC
Confidence 8753
No 15
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.55 E-value=3.2e-15 Score=106.66 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCC-CCCCcc---ccccccccchhHHHHHHHH-HHHHHHHhhh
Q psy5779 4 AGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDD-VNILSK---NDRKHLFGNVTAVRKCSER-LLAALEQCWQ 77 (83)
Q Consensus 4 ~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~-~~~l~~---~~~~~LFsNi~~v~~~s~~-fl~~Le~r~~ 77 (83)
.+++|||++++||++||++|+++|+++.++|+.+ ++. .+.+++ .+.+.||+||++|+.+|+. |+.+|+.|.+
T Consensus 5 k~~~kR~~vi~El~~TE~~Yv~~L~~l~~~y~~~--l~~~~~~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~ 81 (311)
T 1nty_A 5 KSARRKEFIMAELIQTEKAYVRDLRECMDTYLWE--MTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQ 81 (311)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHC
Confidence 4689999999999999999999999999999998 432 123443 3678999999999999995 9999999864
No 16
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.52 E-value=7.2e-15 Score=113.02 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779 4 AGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD 78 (83)
Q Consensus 4 ~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~ 78 (83)
.+++|||++++||++||++|+++|+++.++|+.+ |++ ++++.+.+.||+||.+|+.+|+.|+.+|+.|..+
T Consensus 193 ~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--L~~--~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~ 263 (587)
T 3ky9_A 193 TEYDKRCCCLREIQQTEEKYTDTLGSIQQHFLKP--LQR--FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGT 263 (587)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--HHT--TSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--hCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999998 663 7899999999999999999999999999999876
No 17
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.48 E-value=2.5e-14 Score=103.99 Aligned_cols=72 Identities=18% Similarity=0.385 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCC--ccccccccccchhHHHHHHHH-HHHHHHHhhhh
Q psy5779 5 GERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNIL--SKNDRKHLFGNVTAVRKCSER-LLAALEQCWQD 78 (83)
Q Consensus 5 ~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l--~~~~~~~LFsNi~~v~~~s~~-fl~~Le~r~~~ 78 (83)
..+|||++++||++||++|+++|++++++|+.+ |...++. ...+.+.||+||++|+.+|.. |+.+|+.+.++
T Consensus 9 ~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~--l~~~~~p~~l~~~~~~iF~ni~~I~~~h~~~fl~~L~~~~~~ 83 (354)
T 2rgn_B 9 ALERSMYVLSELVETEKMYVDDLGQIVEGYMAT--MAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKD 83 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH--HHHHCCCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCchhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999988 4432211 123578999999999999999 99999998764
No 18
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=1.6e-14 Score=106.63 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCc-------CCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhh
Q psy5779 4 AGERKLQEAKFELITSEASYFKSLTVLEKHFIASP-------LLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCW 76 (83)
Q Consensus 4 ~~E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~-------~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~ 76 (83)
..+.|||.+++|||+||++|+++|+++.++|+.+. ...+.++++..+.+.||+||++|+.+|+.|+.+|+.|.
T Consensus 18 e~~~kr~~ii~ELl~TE~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~ 97 (434)
T 3mpx_A 18 GGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEERL 97 (434)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999872 01123678889999999999999999999999999998
Q ss_pred hh
Q psy5779 77 QD 78 (83)
Q Consensus 77 ~~ 78 (83)
++
T Consensus 98 ~~ 99 (434)
T 3mpx_A 98 SN 99 (434)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 19
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=99.45 E-value=4.5e-14 Score=101.99 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCC-CCCCccccccccccchhHHHHHHHHHHHHHHHhhh
Q psy5779 9 LQEAKFELITSEASYFKSLTVLEKHFIASPLLDD-VNILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQ 77 (83)
Q Consensus 9 ~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~-~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~ 77 (83)
.+++++||++||++|+++|+++.++|+.+ |.+ .++++..+.+.||+||++|+.+|+.|+.+|+.|.+
T Consensus 4 y~~vi~Eli~TE~~Yv~~L~~l~~~y~~~--l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~ 71 (354)
T 1dbh_A 4 YYDLVKAFMAEIRQYIRELNLIIKVFREP--FVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVE 71 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHH--HHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999998 542 25789999999999999999999999999998864
No 20
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.40 E-value=5.9e-14 Score=114.39 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcCcCCCCC-CCCccccccccccchhHHHHHHHHHHHHHHHhhhh
Q psy5779 6 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDV-NILSKNDRKHLFGNVTAVRKCSERLLAALEQCWQD 78 (83)
Q Consensus 6 E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~-~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~~~ 78 (83)
+.++|++|+||++||++|+++|+++.++|+.+ |... ++++..+.+.||+||++|+.+|+.|+.+|+.|.+.
T Consensus 198 ~~~~revI~ELi~TE~~YV~~L~~l~~~y~~p--L~~~~~~l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~~ 269 (1049)
T 3ksy_A 198 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREP--FVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEM 269 (1049)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTHHH--HHHCTTTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCccCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999998 5432 57899999999999999999999999999999873
No 21
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=69.51 E-value=4 Score=25.90 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHHHHHHHhhhh
Q psy5779 56 GNVTAVRKCSERLLAALEQCWQD 78 (83)
Q Consensus 56 sNi~~v~~~s~~fl~~Le~r~~~ 78 (83)
-||.++-.+-++|.+|+|+|..+
T Consensus 95 ldvaelqAWlErFIdDieqr~~p 117 (133)
T 2bsj_A 95 LDIDEMQAWLERFIDDIEQRKEP 117 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSG
T ss_pred ccHHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999876
No 22
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=54.38 E-value=7.9 Score=28.50 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=45.8
Q ss_pred HHHHHHhHHHHHHhHHHHHHHhhcCcCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHhh
Q psy5779 13 KFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQCW 76 (83)
Q Consensus 13 i~Eli~sE~sY~~sL~vl~~~f~~~~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~r~ 76 (83)
.--+|..|..|+.-|.-+.+ |-.- +....++++.-.+.||..|+-++.-++.|...|....
T Consensus 192 vesliqdecnyvgvltslse-fsei--mtkkqilgpdvlkelfdhipvliqhhqkfisslqeak 252 (518)
T 4gou_A 192 VESLIQDECNYVGVLTSLSE-FSEI--MTKKQILGPDVLKELFDHIPVLIQHHQKFISSLQEAK 252 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHH--HHHTTCSCHHHHHHHHTTHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHhhccceeehhhHHH-HHHH--HHhhhccChHHHHHHHhhchHHHHHHHHHHHHHHHhh
Confidence 44578899999988876643 2211 2123578888899999999999999999999986443
No 23
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=32.91 E-value=33 Score=20.88 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=35.6
Q ss_pred HHHHhHHHHHHHhhcC---cCCCCCCCCccccccccccchhHHHHHHHHHHHHHHH
Q psy5779 22 SYFKSLTVLEKHFIAS---PLLDDVNILSKNDRKHLFGNVTAVRKCSERLLAALEQ 74 (83)
Q Consensus 22 sY~~sL~vl~~~f~~~---~~l~~~~~l~~~~~~~LFsNi~~v~~~s~~fl~~Le~ 74 (83)
-|+++|+--++.|.+. ...++.++-...-.+.||-++.....-=-+....++.
T Consensus 4 ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee 59 (98)
T 3f1i_H 4 QFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDE 59 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888864 2244566766677889999887765554455555543
No 24
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}
Probab=22.89 E-value=18 Score=22.67 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHH
Q psy5779 5 GERKLQEAKFELITSEASYFKSLTVLE 31 (83)
Q Consensus 5 ~E~k~QEai~Eli~sE~sY~~sL~vl~ 31 (83)
.+.-+|-++-+.+.+|..|.+.|+-+.
T Consensus 103 ~~~~r~~v~~~~~~~E~~y~~~~~~~~ 129 (142)
T 2kbt_A 103 EKVFKQYANDNGVDGEWTYDDATKTFT 129 (142)
T ss_dssp ---------------------------
T ss_pred HHHHHHHhhhcCccchhhHHHHHhhcc
Confidence 455666688999999999999887553
No 25
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=22.38 E-value=86 Score=16.79 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHhhcC
Q psy5779 6 ERKLQEAKFELITSEASYFKSLTVLEKHFIAS 37 (83)
Q Consensus 6 E~k~QEai~Eli~sE~sY~~sL~vl~~~f~~~ 37 (83)
.-+.|+|+--+|.+-.+|++.|. +.|..+
T Consensus 13 k~Ql~qaLihLIqnD~~Fl~~IH---eAYl~s 41 (51)
T 2wx3_A 13 KSQLQDTLIHLIKNDSSFLSTLH---EVYLQV 41 (51)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHH---HHHHHT
T ss_pred HHHHHHHHHHHHHcCHHHHHHHH---HHHHHH
Confidence 35789999999999999998876 777766
No 26
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=21.73 E-value=76 Score=17.15 Aligned_cols=13 Identities=15% Similarity=0.182 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHH
Q psy5779 1 TLDAGERKLQEAK 13 (83)
Q Consensus 1 ~ls~~E~k~QEai 13 (83)
.||++|.+-|.+.
T Consensus 21 gLT~eEk~EQ~~L 33 (54)
T 2jvd_A 21 VITEEEKAEQQKL 33 (54)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4889999988653
No 27
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=21.41 E-value=76 Score=17.50 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHH
Q psy5779 1 TLDAGERKLQEAKFE 15 (83)
Q Consensus 1 ~ls~~E~k~QEai~E 15 (83)
.||++|.+-|.+...
T Consensus 21 gLT~eEk~EQ~~LR~ 35 (60)
T 3bhp_A 21 VITEEEKAEQQKLRQ 35 (60)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 489999999987654
No 28
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=20.74 E-value=1.1e+02 Score=16.26 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhHHHHHHhHHH
Q psy5779 8 KLQEAKFELITSEASYFKSLTV 29 (83)
Q Consensus 8 k~QEai~Eli~sE~sY~~sL~v 29 (83)
.+|+||--|+.+=.+=+++|++
T Consensus 29 ~QQ~g~~~Li~ivk~DleDL~i 50 (51)
T 3t98_A 29 QQQEGLSHLISIIKDDLEDIKL 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHhhc
Confidence 4788999999888888888876
Done!