RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5779
(83 letters)
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 57.1 bits (137), Expect = 3e-12
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
L ERK Q ELI +E +Y L ++ + F L + +L++ + +F N
Sbjct: 2 MLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKP--LMESELLTEKEVAMIFVNWKE 59
Query: 61 VRKCSERLLAALEQCWQDS 79
+ C+ +LL AL + S
Sbjct: 60 LIMCNIKLLKALRVRKKMS 78
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange
factor 12 {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 234
Score = 56.0 bits (134), Expect = 9e-12
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
L E K QE EL +E ++ ++L VL++ F + ILS ++ + +F N+
Sbjct: 15 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQR--VSREGILSPSELRKIFSNLED 72
Query: 61 VRKCSERLLAALEQCWQDS 79
+ + L ++ + +
Sbjct: 73 ILQLHIGLNEQMKAVRKRN 91
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange
factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 228
Score = 55.6 bits (133), Expect = 1e-11
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
L E QE EL +EAS+ ++L VL+ F + N++ + + LF N+
Sbjct: 14 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQR--MKKENLMPREELARLFPNLPE 71
Query: 61 VRKCSERLLAALEQCWQDSILLQ 83
+ + A+++ ++ +++
Sbjct: 72 LIEIHNSWCEAMKKLREEGPIIK 94
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 53.6 bits (128), Expect = 5e-11
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 6 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
E+ + + Y + L ++ K F P + + + S ND +++F + + + S
Sbjct: 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFRE-PFVSNSKLFSANDVENIFSRIVDIHELS 59
Query: 66 ERLLAALEQCWQ 77
+LL +E +
Sbjct: 60 VKLLGHIEDTVE 71
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 206
Score = 53.6 bits (128), Expect = 5e-11
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 6 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
KL++ EL+ +E +Y K L L + ++ L L++++ LFGN+T + +
Sbjct: 5 ADKLRKVICELLETERTYVKDLNCLMERYLKP--LQKETFLTQDELDVLFGNLTEMVEFQ 62
Query: 66 ERLLAALEQCWQD 78
L LE +
Sbjct: 63 VEFLKTLEDGVRL 75
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange
factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 203
Score = 53.6 bits (128), Expect = 6e-11
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
L ++ E++++E Y K L + + ++ ++ S K +FGN+
Sbjct: 7 PLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLK-QCRKRRDMFSDEQLKVIFGNIED 65
Query: 61 VRKCSERLLAALEQCWQDS 79
+ + + LE+ + +
Sbjct: 66 IYRFQMGFVRDLEKQYNND 84
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 48.6 bits (115), Expect = 3e-09
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 6 ERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
K E+ +E Y +L +++HF+ PL L D + +F N+ +
Sbjct: 25 YDKRCCCLREIQQTEEKYTDTLGSIQQHFMK-PLQ---RFLKPQDMETIFVNIEELFSVH 80
Query: 66 ERLLAALEQCWQDSI 80
L L+
Sbjct: 81 THFLKELKDALAGPG 95
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId:
9606]}
Length = 209
Score = 48.1 bits (114), Expect = 5e-09
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLFGNVTA 60
T + ++ +E Y K L + ++ L LS + +L GN+
Sbjct: 6 TTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRP--LQTSEKLSSANISYLMGNLEE 63
Query: 61 VRKCSERLLAALEQCWQDSILLQ 83
+ + L+ +LE+C + Q
Sbjct: 64 ICSFQQMLVQSLEECTKLPEAQQ 86
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 41.2 bits (96), Expect = 1e-06
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 7 RKLQEAKFELITSEASYFKSLTVLEKHFIA--SPLLDDVNILSKNDRKHLFGNVTAVRKC 64
R+ + ELI +E +Y + L ++ + ++++ N +FGN+ + +
Sbjct: 2 RRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEF 61
Query: 65 SERL-LAALEQCWQDSILL 82
+ L LE+ Q +
Sbjct: 62 HNNIFLKELEKYEQLPEDV 80
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 38.6 bits (89), Expect = 2e-05
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 6 ERKLQEAKFELITSEASYFKSLTVLEKHFIA----SPLLDDVNILSKNDRKHLFGNVTAV 61
+ EL+ +E +Y + L + + + A + ++ +N + LFGN+ +
Sbjct: 7 AILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEI 66
Query: 62 RKCSERL-LAALEQCWQDSILL 82
R+ L LE C L+
Sbjct: 67 YHFHNRIFLRELESCIDCPELV 88
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 24.9 bits (53), Expect = 1.3
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 1 TLDAGERKLQEAKFELITSEASYFKSLTVLEKHFIASPLLDDVNILSKNDRKHLF 55
LD ER A ++ +FK+L +F +L +ILSK +
Sbjct: 156 ALDTLERDASRAGLQVTYRSGIFFKALA----NFQWDQILQT-DILSKEYLDGCY 205
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 24.5 bits (52), Expect = 2.3
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 31 EKHFIASPLLDDVNILSKNDRKHLFGNVTAVRKCS 65
E +FIA + +V ++ ++ +FG V +V +
Sbjct: 395 EGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVK 429
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein
IscX {Escherichia coli [TaxId: 562]}
Length = 64
Score = 22.3 bits (48), Expect = 5.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 63 KCSERLLAALEQCWQD 78
+E++L A+ W D
Sbjct: 47 ASNEKILEAILLVWLD 62
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX,
catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 255
Score = 22.7 bits (48), Expect = 7.1
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 27 LTVLEKHFIASPLLDD 42
L L KH S DD
Sbjct: 5 LERLGKHRFVSIAFDD 20
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.374
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,168
Number of extensions: 10398
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 19
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)