BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5780
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL REV EA+ + E+ +I +ETSAKDS+NVEEAF +A EL R L
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHY-DILCAIETSAKDSSNVEEAFLRVATELIMRHGGPL 199
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDL +++ VD+ A+E + +P +ETSAK++TNVE++F +A E+K R
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIP----FLETSAKNATNVEQSFMTMAAEIKKRMG 182
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDL +++ VD+ A+E + +P +ETSAK++TNVE++F +A E+K R
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIP----FLETSAKNATNVEQSFMTMAAEIKKRMG 191
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 6/57 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NKCDL +++ VD+ A+E + +P +ETSAK++TNVE++F +A E+K R
Sbjct: 111 GNKCDLTTKKVVDYTTAKEFADSLGIP----FLETSAKNATNVEQSFMTMAAEIKKR 163
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NKCDL+ +R V+++ A+E + +P +ETSA DSTNVE+AF +A ++K S
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMP----FLETSALDSTNVEDAFLTMARQIKESMSQ 175
Query: 76 TLCNEPINTDNTNSPITLSNDTKSIRNKCNC 106
NE + L + + C C
Sbjct: 176 QNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 6/57 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NKCDL +++ VD+ A+E + +P +ETSAK++TNVE++F +A E+K R
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIP----FLETSAKNATNVEQSFMTMAAEIKKR 180
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 6/57 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NKCDL +++ VD+ A+E + +P +ETSAK++TNVE++F +A E+K R
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIP----FLETSAKNATNVEQSFMTMAAEIKKR 170
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 6/57 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NKCDL +++ VD+ A+E + +P +ETSAK++TNVE++F +A E+K R
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIP----FLETSAKNATNVEQSFMTMAAEIKKR 170
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NKCDL+ +R V+++ A+E + +P +ETSA DSTNVE+AF +A ++K S
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMP----FLETSALDSTNVEDAFLTMARQIKESMSQ 175
Query: 76 TLCNEP 81
NE
Sbjct: 176 QNLNET 181
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NKCDL S+R V +E E+ + I ++ ETSAK++ NVE+AF+ +A E+K R
Sbjct: 121 GNKCDLVSKRVVTSDEGRELAD-SHGIKFI-ETSAKNAYNVEQAFHTMAGEIKKR 173
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NKCDL +++ VD+ A+E + +P +ETSAK++TNVE++F A E+K R
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIP----FLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 20 KCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
KCDL +++ VD+ A+E + +P +ETSAK++TNVE++F +A E+K R
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIP----FLETSAKNATNVEQSFMTMAAEIKKRMG 174
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELK 70
NKCDL+ +R V+++ A+E + +P +ETSA DSTNVE+AF +A ++K
Sbjct: 133 GNKCDLKDKRVVEYDVAKEFADANKMP----FLETSALDSTNVEDAFLTMARQIK 183
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+ NKCDL REV +A+E E + I V+ETSAK++ N+EE F ++ ++
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAI--VVETSAKNAINIEELFQGISRQI 184
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL +++ VD A+E + +P +ETSAK++TNVE+AF +A E+K R
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIP----FLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL +++ VD A+E + +P +ETSAK++TNVE+AF +A E+K R
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIP----FLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYV--METSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCD+ +R+V ++E GE + + + METSAK + NVE AF+ LA ++K +
Sbjct: 116 ILGNKCDVNDKRQV----SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DLES REV E E I METSAK ++NVEEAF A E+
Sbjct: 122 GNKSDLESRREVKKEEGEAFAREHGLI--FMETSAKTASNVEEAFINTAKEI 171
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYV--METSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCD+ +R+V ++E GE + + + METSAK + NVE AF+ LA ++K +
Sbjct: 118 ILGNKCDVNDKRQV----SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R VDF EA+ + METSAK S NV E F +A +L
Sbjct: 118 GNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R VDF EA+ + METSAK S NV E F +A +L
Sbjct: 119 GNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R VDF EA+ + METSAK S NV E F +A +L
Sbjct: 118 GNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+ NK DLE ER V EAE E V HY TSAK + +EE F L +
Sbjct: 130 IVGNKIDLEKERHVSIQEAESYAESVGAKHY--HTSAKQNKGIEELFLDLCKRM 181
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R VDF EA+ + METSAK S NV E F +A +L
Sbjct: 118 GNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R VDF EA+ + METSAK S NV E F +A +L
Sbjct: 118 GNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R VDF EA+ + METSAK S NV E F +A +L
Sbjct: 118 GNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R VDF EA+ + METSAK S NV E F +A +L
Sbjct: 117 GNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+ NK DLE ER V EAE E V HY TSAK + +EE F L +
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHY--HTSAKQNKGIEELFLDLCKRM 167
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+ NK DLE ER V EAE E V HY TSAK + +EE F L +
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHY--HTSAKQNKGIEELFLDLCKRM 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R VDF EA+ + METSAK S NV E F +A +L
Sbjct: 118 GNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL REV AEE E + Y +ETSAK+S NVE+ F LA L
Sbjct: 138 GNKIDLAERREVSQQRAEEFSE--AQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL S+R V+F EA+ + METSAK + NV E F +A +L
Sbjct: 117 GNKADLASKRAVEFQEAQAYAD--DNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL S+R V+F EA+ + METSAK + NV E F +A +L
Sbjct: 117 GNKADLASKRAVEFQEAQAYAD--DNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCDL + R VD +A E+ + +P I ETSAK VE+AFY L E++ +
Sbjct: 131 LVGNKCDLPT-RTVDTKQAHELAKSYGIPFI----ETSAKTRQGVEDAFYTLVREIRQYR 185
Query: 74 SATL 77
L
Sbjct: 186 MKKL 189
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL S+R V+F EA+ + METSAK + NV E F +A +L
Sbjct: 115 GNKADLASKRAVEFQEAQAYAD--DNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DLES R+V E E I METSAK + NVEEAF A E+
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLI--FMETSAKTACNVEEAFINTAKEI 182
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCDL S R VD +A+++ +P I ETSAK V++AFY L E++ +
Sbjct: 114 LVGNKCDLPS-RTVDTKQAQDLARSYGIPFI----ETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCDL S R VD +A+++ +P I ETSAK V++AFY L E++ +
Sbjct: 131 LVGNKCDLPS-RTVDTKQAQDLARSYGIPFI----ETSAKTRQGVDDAFYTLVREIRKHK 185
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYV--METSAKDSTNVEEAFYCLANELKNRQ 73
+ NK DLES+R+V +EA G H+V E SAK NV+EAF L ++ Q
Sbjct: 119 LVGNKADLESQRQVPRSEASAFGAS----HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174
Query: 74 SATL 77
L
Sbjct: 175 EQEL 178
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPE-IHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK DL R+V AE+ Y E + METSAK +TNV+E FY +A L Q
Sbjct: 124 GNKSDLLDARKVT---AEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMG-EY-VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
+ NK D ER V + E++ EY +P METSAK NV+ AF +A ELK R
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLP----FMETSAKTGLNVDLAFTAIAKELKRR 175
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R VDF EA+ + ETSAK S NV E F +A +L
Sbjct: 119 GNKADLANKRAVDFQEAQSYAD--DNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 16 VWSNKCDLESEREVDFNEA----EEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
V NK DLE R+V EA EE G + YV ETSAK NV++ F+ L E++
Sbjct: 118 VVGNKSDLEERRQVPVEEARSKAEEWG-----VQYV-ETSAKTRANVDKVFFDLMREIRT 171
Query: 72 RQ 73
++
Sbjct: 172 KK 173
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK DLE +R+V EA+ E ++YV ETSAK NV++ F+ L E++ R+
Sbjct: 126 GNKSDLEDKRQVSVEEAKNRAEQ-WNVNYV-ETSAKTRANVDKVFFDLMREIRARK 179
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 16 VWSNKCDLESEREVDFNEA----EEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
V NK DLE R+V EA EE G + YV ETSAK NV++ F+ L E++
Sbjct: 114 VVGNKSDLEERRQVPVEEARSKAEEWG-----VQYV-ETSAKTRANVDKVFFDLMREIRT 167
Query: 72 RQ 73
++
Sbjct: 168 KK 169
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK DLE +R+V EA+ E ++YV ETSAK NV++ F+ L E++ R+
Sbjct: 118 GNKSDLEDKRQVSVEEAKNRAEQ-WNVNYV-ETSAKTRANVDKVFFDLMREIRARK 171
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK DLE +R+V EA+ E ++YV ETSAK NV++ F+ L E++ R+
Sbjct: 130 GNKSDLEDKRQVSVEEAKNRAEQ-WNVNYV-ETSAKTRANVDKVFFDLMREIRARK 183
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK DLE +R+V EA+ E ++YV ETSAK NV++ F+ L E++ R+
Sbjct: 118 GNKSDLEDKRQVSVEEAKNRAEQ-WNVNYV-ETSAKTRANVDKVFFDLMREIRARK 171
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++ +
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQHK 167
Query: 74 SATL 77
L
Sbjct: 168 LRKL 171
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++ +
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQHK 167
Query: 74 SATL 77
L
Sbjct: 168 LRKL 171
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
+ NKCDL + R V+ +A+++ I Y+ ETSAK VE+AFY L E++ +
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYG-IPYI-ETSAKTRQGVEDAFYTLVREIRQHKLR 169
Query: 76 TL 77
L
Sbjct: 170 KL 171
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ I Y+ ETSAK VE+AFY L E++
Sbjct: 120 LVGNKCDLAA-RTVESRQAQDLARSYG-IPYI-ETSAKTRQGVEDAFYTLVREIRQ 172
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 118 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 118 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 118 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDL-AGRTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 119 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DLE++R+V + EA++ E + +E SAK NVE+AF A ++
Sbjct: 142 GNKADLEAQRDVTYEEAKQFAEENGLL--FLEASAKTGENVEDAFLEAAKKI 191
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DLE++R+V + EA++ E + +E SAK NVE+AF A ++
Sbjct: 127 GNKADLEAQRDVTYEEAKQFAEENGLL--FLEASAKTGENVEDAFLEAAKKI 176
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL + R V+ +A+++ +P I ETSAK VE+AFY L E +
Sbjct: 113 LVGNKCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREFRQ 165
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN-RQ 73
NK DL+ R ++ N+A + + E +ETSA ++TNVE AF+ L NE+ N RQ
Sbjct: 120 GNKSDLKHLRVINDNDATQYAK--KEKLAFIETSALEATNVELAFHQLLNEIYNVRQ 174
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DL+ EREV F EA + E+ + +ETSA NVEEAF A + N+
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQE-NELMF-LETSALTGENVEEAFLKCARTILNK 189
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ N+CDL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNRCDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DL+++REV F EA + E+ + +ETSA NVEEAF A ++ N+
Sbjct: 122 GNKKDLDADREVTFLEASRFAQE-NELMF-LETSALTGENVEEAFVQCARKILNK 174
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK D E++RE+ + E+ + + + + E SAKD+ NV+E F L +++
Sbjct: 138 GNKLDCETDREITRQQGEKFAQQITGMRFC-EASAKDNFNVDEIFLKLVDDI 188
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DLE +R+V EA+ + ++YV ETSAK NV++ F+ L E++ R
Sbjct: 116 GNKSDLEDKRQVSVEEAKNRADQ-WNVNYV-ETSAKTRANVDKVFFDLMREIRAR 168
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA-NELKNRQS 74
V NK DLE+ R+V A+ I Y ETSAK++ NVE+AF +A N LK
Sbjct: 122 VLGNKIDLEN-RQVATKRAQAWCYSKNNIPY-FETSAKEAINVEQAFQTIARNALKQETE 179
Query: 75 ATLCN---EPINTD 85
L N EPI D
Sbjct: 180 VELYNEFPEPIKLD 193
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA-NELKNRQS 74
V NK DLE+ R+V A+ I Y ETSAK++ NVE+AF +A N LK
Sbjct: 122 VLGNKIDLEN-RQVATKRAQAWCYSKNNIPY-FETSAKEAINVEQAFQTIARNALKQETE 179
Query: 75 ATLCN---EPINTD 85
L N EPI D
Sbjct: 180 VELYNEFPEPIKLD 193
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NK DL S R VD +A+++ +P I ETSAK V++AFY L E++ +
Sbjct: 114 LVGNKSDLPS-RTVDTKQAQDLARSYGIPFI----ETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NK DL S R VD +A+++ +P I ETSAK V++AFY L E++ +
Sbjct: 114 LVGNKSDLPS-RTVDTKQAQDLARSYGIPFI----ETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NK DL S R VD +A+++ +P I ETSAK V++AFY L E++ +
Sbjct: 114 LVGNKSDLPS-RTVDTKQAQDLARSYGIPFI----ETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NK DL+ +R+V E +++ + + ME SAK NV++AF+ L ++ Q
Sbjct: 115 LIGNKADLDHQRQVTQEEGQQLARQLKVTY--MEASAKIRMNVDQAFHELVRVIRKFQ 170
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DL+++REV F EA + E+ + +ETSA +VEEAF A ++ N+
Sbjct: 123 GNKKDLDADREVTFLEASRFAQE-NELMF-LETSALTGEDVEEAFVQCARKILNK 175
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DL+++REV F EA + E+ + +ETSA +VEEAF A ++ N+
Sbjct: 120 GNKKDLDADREVTFLEASRFAQE-NELMF-LETSALTGEDVEEAFVQCARKILNK 172
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL R V +EA E + ++ ETSA DSTNVEEAF + E+
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEK-NNLSFI-ETSALDSTNVEEAFKNILTEI 166
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL REV EA E + +ETSA DSTNVE AF + E+ + S
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLF--LETSALDSTNVELAFETVLKEIFAKVS 191
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA-NELKNRQS 74
V NK DLE+ R+V A+ I Y ETSAK++ NVE+AF +A N LK
Sbjct: 122 VLGNKIDLEN-RQVATKRAQAWCYSKNNIPY-FETSAKEAINVEQAFQTIARNALKQETE 179
Query: 75 ATLCNE 80
L NE
Sbjct: 180 VELYNE 185
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL R V +EA E +ETSA DSTNVE AF + E+
Sbjct: 132 GNKSDLRHLRAVPTDEARAFAE--KNGLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NKCDLE ER V + + + + +E+SAK NV E FY L ++
Sbjct: 117 GNKCDLEDERVVGKEQGQNLARQWNNCAF-LESSAKSKINVNEIFYDLVRQI 167
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NKCDLE ER V + + + + +E+SAK NV E FY L ++
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWNNCAF-LESSAKSKINVNEIFYDLVRQI 165
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL REV EA E + +ETSA DSTNVE AF + E+ + S
Sbjct: 122 GNKSDLSQAREVPTEEARMFAENNGLLF--LETSALDSTNVELAFETVLKEIFAKVS 176
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA-NELKNRQS 74
V NK D E+ R+V A+ I Y ETSAK++ NVE+AF +A N LK
Sbjct: 122 VLGNKIDFEN-RQVATKRAQAWCYSKNNIPY-FETSAKEAINVEQAFQTIARNALKQETE 179
Query: 75 ATLCN---EPINTD 85
L N EPI D
Sbjct: 180 VELYNEFPEPIKLD 193
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL R V +EA E +ETSA DSTNVE AF + E+
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAE--KNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYV-METSAKDSTNVEEAFYCLANEL 69
+ NKCDL REV +A+ +Y IH + +ETSAK++ N+ E F ++ +
Sbjct: 115 IAGNKCDLTDVREVMERDAK---DYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYV-METSAKDSTNVEEAFYCLANEL 69
+ NKCDL REV +A+ +Y IH + +ETSAK++ N+ E F ++ +
Sbjct: 116 IAGNKCDLTDVREVMERDAK---DYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL R V +EA E +ETSA DSTNVE AF + E+
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAE--KNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NKCD E ER V ++ +++ E SAKD+ NV++ F L + + + S +L
Sbjct: 120 GNKCDXEDERVVSSERGRQLADHLG--FEFFEASAKDNINVKQTFERLVDVICEKXSESL 177
Query: 78 -CNEPINTDNTNSP 90
+P T P
Sbjct: 178 DTADPAVTGAKQGP 191
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NKCDLE ER V + + + + +E+SAK NV E FY L ++
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWCNCAF-LESSAKSKINVNEIFYDLVRQI 165
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL ++R V++ EA+ + METSAK + NV + F +A +L
Sbjct: 120 GNKADLANKRMVEYEEAQAYAD--DNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL R V +EA E +ETSA DSTNVE AF + E+
Sbjct: 120 GNKSDLRHLRAVPTDEARAFAE--KNGLSFIETSALDSTNVEAAFQTILTEI 169
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NK DL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKSDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL R V +EA E +ETSA DSTNVE AF + E+
Sbjct: 123 GNKSDLRHLRAVPTDEARAFAE--KNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NKCDLE ER V + + + + +E+SAK NV E FY L ++
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWCNCAF-LESSAKSKINVNEIFYDLVRQI 165
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL R V +EA E +ETSA DSTNVE AF + E+
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAE--KNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NK DL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKSDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NK DL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKXDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NK DL + R V+ +A+++ +P I ETSAK VE+AFY L E++
Sbjct: 113 LVGNKXDLAA-RTVESRQAQDLARSYGIPYI----ETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
NKCD+E ER V ++ +++ E SAKD+ NV++ F
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLG--FEFFEASAKDNINVKQTF 159
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NKCD REV +EAE + METSAK + NV+E F L N L+ R++ +L
Sbjct: 116 GNKCDESPSREVQSSEAEALARTWK--CAFMETSAKLNHNVKELFQELLN-LEKRRTVSL 172
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NKCD E++REVD EA+ + + METSAK + NV+E F L L+ R+
Sbjct: 121 GNKCD-ETQREVDTREAQAVAQEWK--CAFMETSAKMNYNVKELFQELLT-LETRR---- 172
Query: 78 CNEPINTDNTNSPITLSNDTKSIRNKCN 105
N +N D S T ++ KC
Sbjct: 173 -NMSLNIDGKRSG--KQKRTDRVKGKCT 197
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DLE +R V EA E+ E ++ ETSA + TN+ A L + + R
Sbjct: 134 GNKSDLEDQRAVKEEEARELAEKYGIPYF--ETSAANGTNISHAIEMLLDLIMKR 186
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 7 WPDSAHDSR-------VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVE 59
W D R + NK DL +R++ E E+ + + + +ETSAK NV+
Sbjct: 96 WIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMF--IETSAKTGYNVK 153
Query: 60 EAFYCLANEL 69
+ F +A+ L
Sbjct: 154 QLFRRVASAL 163
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 9 DSAHDS---RVWSNKCDLESEREVDFNEAEE-----MGEYVPEIHYVM--ETSAKDSTNV 58
D+AH++ + NK D+ R+ E ++ GE + + + ETSAKD +N+
Sbjct: 128 DAAHETVPIMLVGNKADI---RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184
Query: 59 EEAFYCLANELKNR 72
EA LA E+K R
Sbjct: 185 VEAVLHLAREVKKR 198
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 13 DSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
D + NK DL +REV+ +A E+ + ++ ETSA NVE+A L + + R
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYF--ETSAATGQNVEKAVETLLDLIMKR 200
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 13 DSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
D + NK DL +REV+ +A E+ E I Y ETSA NVE++ L + + R
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYG-IPY-FETSAATGQNVEKSVETLLDLIXKR 186
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 13 DSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
D + NK DL +REV+ +A E+ E ++ ETSA NVE++ L + + R
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYF--ETSAATGQNVEKSVETLLDLIMKR 186
Query: 73 Q----SATLCNEPINTDNTNSPITLSNDTKSIRNKCNC 106
T + +N N+ + K KC C
Sbjct: 187 MEKCVEKTQVPDTVNGGNSGK----LDGEKPAEKKCAC 220
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 13 DSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
D + NK DL +REV+ +A E+ E ++ ETSA NVE++ L + + R
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYF--ETSAATGQNVEKSVETLLDLIMKR 186
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL +R+V E E + + + +ETSAK NV++ F +A L +S
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMF--IETSAKAGYNVKQLFRRVAAALPGMES 182
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 13 DSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
D + NK DL +REV+ +A E+ E I Y ETSA NVE++ L + + R
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYG-IPY-FETSAATGQNVEKSVETLLDLIXKR 186
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 7 WPDSAHDSR-------VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVE 59
W D R + NK DL +R+V E E + + + +ETSAK NV+
Sbjct: 100 WIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMF--IETSAKAGYNVK 157
Query: 60 EAFYCLANELKNRQS 74
+ F +A L +S
Sbjct: 158 QLFRRVAAALPGMES 172
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL +R+V E E + + + +ETSAK NV++ F +A L +S
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVMF--IETSAKAGYNVKQLFRRVAAALPGMES 179
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCD+E ER V + + + E + + E SAK++ +V +AF L + + ++ S
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFF--EASAKENISVRQAFERLVDAICDKMS 189
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 10/51 (19%)
Query: 16 VWSNKCDLESEREVDFNEAE----EMGEYVPEIHYVMETSAKDSTNVEEAF 62
+ NK D+ SER+V EA+ + G+Y P ETSAKD+TNV AF
Sbjct: 123 ILGNKIDI-SERQVSTEEAQAWCRDNGDY-P----YFETSAKDATNVAAAF 167
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 16 VWSNKCDLESEREVDFNEAE----EMGEYVPEIHYVMETSAKDSTNVEEAF 62
+ NK D++ ER+V EA+ + G+Y ETSAKDSTNV AF
Sbjct: 125 ILGNKTDIK-ERQVSTEEAQAWCKDNGDYP-----YFETSAKDSTNVAAAF 169
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 10/51 (19%)
Query: 16 VWSNKCDLESEREVDFNEAE----EMGEYVPEIHYVMETSAKDSTNVEEAF 62
+ NK D+ SER+V EA+ + G+Y P ETSAKD+TNV AF
Sbjct: 121 ILGNKIDI-SERQVSTEEAQAWCRDNGDY-P----YFETSAKDATNVAAAF 165
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHY-VMETSAKDSTNVEEAF 62
NKCDLE ER V AE+ ++ + E SAK++ NV++ F
Sbjct: 134 GNKCDLEDERVV---PAEDGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+NK D +++ +VD E ++ + ++TSAK TN++ FY LA E+
Sbjct: 154 ANKID-KNKFQVDILEVQKYAQ--DNNLLFIQTSAKTGTNIKNIFYMLAEEI 202
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL REV +E V + ++ ETSA NV+E F + +++ R+ +
Sbjct: 121 GNKSDLVRXREVSVSEGRAXA-VVFDXKFI-ETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
Query: 78 CNE 80
NE
Sbjct: 179 KNE 181
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 16 VWSNKCDLESEREVDFNEAE----EMGEYVPEIHYVMETSAKDSTNVEEAF 62
V NK D E +R+V EA+ E G+Y P +ETSAKD TNV AF
Sbjct: 121 VLGNKVDKE-DRQVTTEEAQTWCMENGDY-P----YLETSAKDDTNVTVAF 165
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSA-KDSTNVEEAFYCLANELKNRQ 73
NK DL+ R+V E E++ + Y E SA N+ E FY L E++ R+
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFY--ECSACTGEGNITEIFYELCREVRRRR 193
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 16 VWSNKCDLE-SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
+ NK D E S++ V A+E+ + + +I + TSAK++ NV+ AF
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAF 169
>pdb|3MGJ|A Chain A, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a.
pdb|3MGJ|B Chain B, Crystal Structure Of The Saccharop_dh_n Domain Of Mj1480
Protein From Methanococcus Jannaschii. Northeast
Structural Genomics Consortium Target Mjr83a
Length = 118
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 26 EREVD--FNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67
ER VD NE ++G +PEI V A+ + E FY N
Sbjct: 58 ERHVDEILNELRDLGAEIPEIEEVELQPAEKDXVLPEGFYSTTN 101
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 47 VMETSAKDSTNVEEAFYCL 65
+ ETSAK++ NVEE F C+
Sbjct: 147 LFETSAKENVNVEEMFNCI 165
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL REV +E V + ++ ETSA NV+E F + +++ R+ +
Sbjct: 121 GNKSDLVRXREVSVSEGRAXA-VVFDCKFI-ETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
Query: 78 CNE 80
NE
Sbjct: 179 KNE 181
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 17 WSNKCDLESEREVDFNEAEEMG 38
WSN CD E + ++ +EA E G
Sbjct: 158 WSNVCDEEMDLAIEASEAAEQG 179
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 21 CDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLCNE 80
C L ++ +DFNE + + E V E T+ + NV F L + A CN
Sbjct: 417 CALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNV---FNTEVRNLSKVERANACNS 473
Query: 81 PINT-DNTNSPITLSNDTKSIRNKCN 105
I + S D KS+ C+
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCS 499
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 17 WSNKCDLESEREVDFNEAEEMG 38
WSN CD E + ++ +EA E G
Sbjct: 283 WSNVCDEEMDLAIEASEAAEQG 304
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 17 WSNKCDLESEREVDFNEAEEMG 38
WSN CD E + ++ +EA E G
Sbjct: 283 WSNVCDEEMDLAIEASEAAEQG 304
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 17 WSNKCDLESEREVDFNEAEEMG 38
WSN CD E + ++ +EA E G
Sbjct: 283 WSNVCDEEMDLAIEASEAAEQG 304
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 17 WSNKCDLESEREVDFNEAEEMG 38
WSN CD E + ++ +EA E G
Sbjct: 289 WSNVCDEEXDLAIEASEAAEQG 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,093,762
Number of Sequences: 62578
Number of extensions: 105879
Number of successful extensions: 400
Number of sequences better than 100.0: 166
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 166
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)