BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5780
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34139|RAB1A_DICDI Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A
PE=2 SV=2
Length = 202
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL +++ VDFN A+ + + +I + +ETSAK STNVE+AF +A E+KNR +A+
Sbjct: 120 GNKSDLVAKKVVDFNTAKAFADSL-QIPF-LETSAKQSTNVEQAFMTMATEIKNRLTAS- 176
Query: 78 CNEPINTDNTNSPITLSNDTKSIRNKC 104
+P T + N + S+ S ++ C
Sbjct: 177 --QPTQTVDKNKVVPGSSAPISPKSGC 201
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 18 SNKCDLESEREVDFNE----AEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR- 72
NKCDL R V + A+E+G +P +ETSAKD+TNVE+AF +A E+KNR
Sbjct: 120 GNKCDLAENRVVSYEAGKALADEIG--IP----FLETSAKDATNVEKAFMTMAGEIKNRM 173
Query: 73 --QSATLCNEPINTDNTNSPI 91
Q AT ++P P+
Sbjct: 174 ASQPATNASKPATVQMRGQPV 194
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1
Length = 210
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL REV EA+ + E+ +I +ETSAKDS+NVEEAF +A EL R +
Sbjct: 128 GNKSDLADLREVPLAEAQSLAEHY-DILCAIETSAKDSSNVEEAFTRVATELIMRHGGPM 186
Query: 78 CNEPINTDNTNSPITLSNDTKSIRNKCNC 106
+E NTD+ + D+K I C
Sbjct: 187 FSEK-NTDH------IQLDSKDIAESWGC 208
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL REV EA+ + E+ +I +ETSAKDS+NVEEAF +A EL R +
Sbjct: 128 GNKSDLADFREVPLAEAQSLAEHY-DILCAIETSAKDSSNVEEAFTRVATELIMRHGGPM 186
Query: 78 CNEPINTDNTNSPITLSNDTKSIRNKCNC 106
+E NTD+ + D+K I C
Sbjct: 187 FSEK-NTDH------IQLDSKDIAESWGC 208
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL REV EA+ + E+ +I +ETSAKDS+NVEEAF +A EL R L
Sbjct: 130 GNKSDLSELREVSLAEAQSLAEHY-DILCAIETSAKDSSNVEEAFLRVATELIMRHGGPL 188
Query: 78 CNEPINTDNTNSPITLSNDTKSIRNKCNC 106
+E SP + ++K I C
Sbjct: 189 FSE-------KSPDHIQLNSKDIGEGWGC 210
>sp|A6NDJ8|RB43L_HUMAN Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5
SV=3
Length = 181
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL REV EA+ + E+ +I +ETSAKDS+NVEEAF +A EL R L
Sbjct: 99 GNKSDLSELREVSLAEAQSLAEHY-DILCAIETSAKDSSNVEEAFLRVATELIMRHGGPL 157
Query: 78 CNEPINTDNTNSPITLSNDTKSIRNKCNC 106
+E SP + ++K I C
Sbjct: 158 FSE-------KSPDHIQLNSKDIGEGWGC 179
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHY-VMETSAKDSTNVEEAFYCLANELKNRQSAT 76
NK DL +++ VDF A+E Y ++ +ETSAK++TNVE+AF +A E+KNR
Sbjct: 123 GNKSDLTTKKVVDFTTAKE---YADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMG-- 177
Query: 77 LCNEPINTDNTNSP-ITLSNDTKSIRNKCNC 106
PI + + P + +++ T NK C
Sbjct: 178 ----PITAASDSKPSVKINSSTPVSANKGGC 204
>sp|Q3ZC27|RAB19_BOVIN Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1
Length = 217
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NKCDL +R V F +A + E + V+ETSAK+S N++E F +A EL R S L
Sbjct: 129 GNKCDLWEKRHVLFEDACILAEKYGLLA-VLETSAKESKNIDEVFVLMARELMARHSLPL 187
Query: 78 CNE--PINTDNTNSPITLSNDTKSIRNKCNC 106
E P + ++P+ ++ + +N+C C
Sbjct: 188 YGEGAPGSLPLESTPVLMAPAPRE-KNQCTC 217
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHY-VMETSAKDSTNVEEAFYCLANELKNRQSAT 76
NK DL S++ V+++ A+ + EI +ETSAK++TNVE+AF +A E+KNR
Sbjct: 120 GNKSDLTSKKVVEYSVAKAFAD---EIGIPFLETSAKNATNVEQAFMTMAAEIKNR---- 172
Query: 77 LCNEPINTDNTNSPITLSNDTKSIRNK 103
+ ++PI T P+ + K I +K
Sbjct: 173 MASQPIPT-KAGGPVVRPQEGKPINSK 198
>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C
PE=2 SV=1
Length = 201
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 6/58 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL S+R VDF A++ + +P +METSAK+ST ++EAF LA+++K
Sbjct: 143 IVGNKCDLNSKRAVDFKIAKKFADELNIP----IMETSAKESTAIDEAFIKLASDIKK 196
>sp|A4D1S5|RAB19_HUMAN Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2
Length = 217
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NKCDL +R V F +A + E + V+ETSAK+S N+EE F +A EL R S L
Sbjct: 129 GNKCDLWEKRHVLFEDACTLAEKYGLLA-VLETSAKESKNIEEVFVLMAKELIARNSLHL 187
Query: 78 CNE-PINTDNTNSPITLSNDTKSIRNKCNC 106
E +N +S L S + C C
Sbjct: 188 YGESALNGLPLDSSPVLMAQGPSEKTHCTC 217
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDL +++ VD+ A+E + + I + +ETSAK++TNVE+AF +A E+K R
Sbjct: 120 GNKCDLTTKKVVDYTTAKEFADSLG-IPF-LETSAKNATNVEQAFMTMAAEIKKRMG 174
>sp|P08647|RAS_SCHPO Ras-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=ras1 PE=3 SV=2
Length = 219
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK----- 70
+ +NKCDLE+ER V E E++ + + ++ +ETSAK NVEEAFY L ++
Sbjct: 118 LVANKCDLEAERVVSRAEGEQLAKSMHCLY--VETSAKLRLNVEEAFYSLVRTIRRYNKS 175
Query: 71 ------NRQSATLCNEPINTDNTNSPITLSNDTKSIRNKC 104
N+Q+ P +T S + S + KC
Sbjct: 176 EEKGFQNKQAVQTAQVPASTAKRASAVNNSKTEDEVSTKC 215
>sp|P15064|RASG_DICDI Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1
Length = 189
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71
V NKCDLES+R+V E +++ + +ETSAK NVEEAFY L E++
Sbjct: 113 VVGNKCDLESDRQVTTGEGQDLAKSFGSPF--LETSAKIRVNVEEAFYSLVREIRK 166
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDL +++ VD+ A+E + + I + +ETSAK++TNVE++F +A E+K R
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLG-IPF-LETSAKNATNVEQSFMTMAAEIKKRMG 177
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDL +++ VD+ A+E + + I + +ETSAK++TNVE++F +A E+K R
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLG-IPF-LETSAKNATNVEQSFMTMAAEIKKRMG 177
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDL +++ VD+ A+E + + I + +ETSAK++TNVE++F +A E+K R
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLG-IPF-LETSAKNATNVEQSFMTMAAEIKKRMG 177
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDL +++ VD+ A+E + + I + +ETSAK++TNVE++F +A E+K R
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLG-IPF-LETSAKNATNVEQSFMTMAAEIKKRMG 177
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDL +++ VD+ A+E + + I + +ETSAK++TNVE++F +A E+K R
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLG-IPF-LETSAKNATNVEQSFMTMAAEIKKRMG 177
>sp|P34729|RAS1_PHYPO Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1
Length = 189
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELKN 71
V NKCDLE ER+V E +++ P METSAK NVEE+FY L E++
Sbjct: 113 VVGNKCDLEGERQVTTGEGQDLARSFGCP----FMETSAKSRVNVEESFYQLVREIRK 166
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NK D+ ++ V+++ A+E + +P +ETSAKDSTNVE+AF ++ ++K R
Sbjct: 120 GNKSDMVDKKVVEYSVAKEFADSLNIP----FLETSAKDSTNVEQAFLTMSRQIKER--- 172
Query: 76 TLCNEPINTDNTNSPITLSNDTKSIRNKCNC 106
+ N + N S + + T ++ NC
Sbjct: 173 -MGNNTFASSNAKSSVKVGQGTNVSQSSSNC 202
>sp|Q9SRS5|RAA5B_ARATH Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2
SV=1
Length = 217
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68
D+A + NKCDLE R V E + + E E + METSA D+TNV++AF + E
Sbjct: 115 DTAVAQMLVGNKCDLEDIRAVSVEEGKALAE--EEGLFFMETSALDATNVDKAFEIVIRE 172
Query: 69 LKNRQSATLCN 79
+ N S L N
Sbjct: 173 IFNNVSRKLLN 183
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHY---VMETSAKDSTNVEEAFYCLANELKNR 72
+ NKCD+ +R+V ++E GE + I Y +ETSAK STNVEEAF+ LA ++ +
Sbjct: 118 ILGNKCDMNDKRQV----SKERGEKLA-IDYGIKFLETSAKSSTNVEEAFFTLARDIMTK 172
Query: 73 QSATLCNEPINTDNTNSPITLS 94
+ + + N+ P+ ++
Sbjct: 173 LNRKMNDS--NSSGAGGPVKIT 192
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHY---VMETSAKDSTNVEEAFYCLANELKNR 72
+ NKCD+ +R+V ++E GE + I Y +ETSAK STNVEEAF+ LA ++ +
Sbjct: 118 ILGNKCDMNDKRQV----SKERGEKLA-IDYGIKFLETSAKSSTNVEEAFFTLARDIMTK 172
Query: 73 QSATLCNEPINTDNTNSPITLS 94
+ + + N+ P+ ++
Sbjct: 173 LNRKMNDS--NSSGAGGPVKIT 192
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NKCDL ++ VD + A E + V I + +ETSAK S NVE+AF +A+E+K Q
Sbjct: 120 GNKCDLIEKKIVDTSTAREYADSVG-IPF-LETSAKSSANVEQAFMIMASEIKKLQGGI- 176
Query: 78 CNEPINTDNTNSPITLSNDTKSIRNKCNC 106
+P N N+ + I K C
Sbjct: 177 --QPNNNSTYNAHVVKPTGFTPIGKKKKC 203
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NKCDL+ +R V+++ A+E + +P +ETSA DSTNVE+AF +A ++K S
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMP----FLETSALDSTNVEDAFLTMARQIKESMSQ 175
Query: 76 TLCNEP 81
NE
Sbjct: 176 QNLNET 181
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHY---VMETSAKDSTNVEEAFYCLANELKNR 72
+ NKCD+ +R+V ++E GE + I Y +ETSAK STNVEEAF+ LA R
Sbjct: 118 ILGNKCDMNDKRQV----SKERGEKLA-IDYGIKFLETSAKSSTNVEEAFFTLA-----R 167
Query: 73 QSATLCNEPINTDNT---NSPITLS 94
T N +N N+ P+ ++
Sbjct: 168 DIMTKLNRKMNDSNSAGAGGPVKIT 192
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NK DL ++ VD+ A+ + + I + +ETSAK++TNVE+AF +A E+KNR ++
Sbjct: 120 GNKSDLTGKKVVDYQAAKAFADEIG-IPF-LETSAKNATNVEQAFMTMAAEIKNRMAS 175
>sp|P03967|RASD_DICDI Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2
Length = 187
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NK DL+ ER+V NE +E+ + P ME+SAK NVEEAFY L E++
Sbjct: 113 LVGNKADLDHERQVSVNEGQELAKGFNCP----FMESSAKSRINVEEAFYSLVREIRK 166
>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B
PE=2 SV=1
Length = 203
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 18 SNKCDLESEREVDFNEAEEMG-EYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ--- 73
NKCD+ ++ VD + + + EY I + +ETSAK+S NVEEAF LA ++K R
Sbjct: 127 GNKCDMTEKKVVDSSRGKSLADEY--GIKF-LETSAKNSVNVEEAFIGLAKDIKKRMIDT 183
Query: 74 ----SATLCNEPINTDNT 87
T+C P N NT
Sbjct: 184 PNDPDHTICITPNNKKNT 201
>sp|Q05058|RASL_COPCI 24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1
Length = 215
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHY---VMETSAKDSTNVEEAFYCLANELK-- 70
V +NKCDLE ER+V NE ++ + H+ +ETSAK NV+EAF L E++
Sbjct: 120 VVANKCDLEYERQVGMNEGRDLAK-----HFGCKFIETSAKQRINVDEAFSNLVREIRKY 174
Query: 71 NRQSAT 76
NR+ T
Sbjct: 175 NREQQT 180
>sp|A8NU18|RASL_COPC7 24 kDa Ras-like protein OS=Coprinopsis cinerea (strain Okayama-7 /
130 / ATCC MYA-4618 / FGSC 9003) GN=CC-RAS PE=3 SV=3
Length = 215
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHY---VMETSAKDSTNVEEAFYCLANELK-- 70
V +NKCDLE ER+V NE ++ + H+ +ETSAK NV+EAF L E++
Sbjct: 120 VVANKCDLEYERQVGMNEGRDLAK-----HFGCKFIETSAKQRINVDEAFSNLVREIRKY 174
Query: 71 NRQSAT 76
NR+ T
Sbjct: 175 NREQQT 180
>sp|Q9SIP0|RAA5D_ARATH Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=2
SV=1
Length = 219
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NKCDLES R V E + + E E + METSA DSTNV+ AF + ++ +
Sbjct: 124 GNKCDLESIRAVSVEEGKALAE--TEGLFFMETSALDSTNVKTAFEMVIRDIYT----NI 177
Query: 78 CNEPINTDNTNSPITLSNDTKSIRN 102
+ +N+D + +++ N +++
Sbjct: 178 SRKQLNSDTYKTELSMKNRVSLVKD 202
>sp|Q5M7U5|RAB19_RAT Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1
Length = 217
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL +R V F +A + E + V+ETSAK+S N++E F +A EL R S L
Sbjct: 129 GNKSDLWEKRHVLFEDACTLAEKYGLL-AVLETSAKESRNIDEVFVLMAKELIARNSLHL 187
Query: 78 CNEPINTD--NTNSPITLSNDTKSIRNKCNC 106
E +SP+ +++ S R C C
Sbjct: 188 YGESAQQGLPQDSSPVLVAH-VPSERTHCTC 217
>sp|P28187|RAA5C_ARATH Ras-related protein RABA5c OS=Arabidopsis thaliana GN=RABA5C PE=1
SV=1
Length = 214
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67
D+ + NKCDLES R V E + + E E + METSA DSTNV+ AF +
Sbjct: 114 SDTTVAKMLIGNKCDLESIRAVSVEEGKSLAE--SEGLFFMETSALDSTNVKTAFEMVIR 171
Query: 68 ELKNRQSATLCNEPINTDNTNSPITL 93
E+ + + + +N+D+ +T+
Sbjct: 172 EIY----SNISRKQLNSDSYKEELTV 193
>sp|P34726|RAS2_PHYPO Ras-like protein 2 OS=Physarum polycephalum GN=RAS-2 PE=2 SV=1
Length = 193
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELKN 71
+ NKCDL SER+V NE +E+ P +ETSAK NVEE FY L E++
Sbjct: 115 LAGNKCDLASERQVTTNEGQELARAFGCP----FVETSAKARLNVEECFYGLVREIRK 168
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 18 SNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DL +E+ VD N+A+ E +P I ETSAK++TNVEE F +A ++KNR
Sbjct: 122 GNKTDLVNEKVVDSNQAKSFAESYGIPFI----ETSAKNATNVEECFISMARDIKNR 174
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYV--METSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCD+ +R+V ++E GE + + + METSAK + NVE AFY LA ++K +
Sbjct: 118 ILGNKCDVNDKRQV----SKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKM 173
Query: 74 SATLCNEPINTDNTNSPITLSNDTKSIRNKC 104
L N IT +S +C
Sbjct: 174 DKKLEGNSPQGSNQGVKITPDQQKRSSFFRC 204
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NKCD E +R+V F + + + + + + + +E SAK + NV+EAF+ LA E+K ++
Sbjct: 121 GNKCDCEDQRQVSFEQGQALADELG-VKF-LEASAKTNVNVDEAFFTLAREIKKQK 174
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 18 SNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL ++R VDF EA+ + METSAK S NV E F +A +L
Sbjct: 132 GNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNVNEIFMAIAKKLPK------ 183
Query: 78 CNEPINTDNTNS---PITLSNDTKSIRNKC 104
NEP N ++ + L+ T+ RN+C
Sbjct: 184 -NEPQNPGANSARGRGVDLTEPTQPTRNQC 212
>sp|O42785|RASL_COLTR Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1
Length = 214
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK--NRQ 73
V NKCDLE EREV E E + + +ETSAK NV++AFY + E++ NR+
Sbjct: 118 VVGNKCDLEGEREVTRQEGEALAKSFG--CKFIETSAKSRINVDKAFYDIVREIRRYNRE 175
Query: 74 SATLCNEPINTDNTNSP 90
N P
Sbjct: 176 MQGYSTGSGGASGINGP 192
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 16/85 (18%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHY---VMETSAKDSTNVEEAFYCLANELKNR 72
+ NKCD+ +R+V ++E GE + I Y +ETSAK S NVEEAF+ LA R
Sbjct: 118 ILGNKCDMNDKRQV----SKERGEKLA-IDYGIKFLETSAKSSANVEEAFFTLA-----R 167
Query: 73 QSATLCNEPINTDNT---NSPITLS 94
T N +N N+ P+ ++
Sbjct: 168 DIMTKLNRKMNDSNSAGAGGPVKIT 192
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL----KN 71
+ NKCD+E++R+V +AE++ I + ETSAK S NV+EAF LA ++
Sbjct: 118 LLGNKCDMEAKRQVQREQAEKLARE-HRIRF-FETSAKSSVNVDEAFSSLARDILLKTGG 175
Query: 72 RQSAT 76
R+S T
Sbjct: 176 RRSGT 180
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 18 SNKCDLESEREVDFNEAEEMG-EYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSAT 76
NKCD+ ++ VD + + + EY + +ETSAK+S NVEEAF LA ++K R T
Sbjct: 127 GNKCDMAEKKVVDSSRGKSLADEYGIKF---LETSAKNSINVEEAFISLAKDIKKRMIDT 183
Query: 77 LCNEP 81
+P
Sbjct: 184 PNEQP 188
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+ NKCDL REV +A+E E + I V+ETSAK++ N+EE F ++ ++
Sbjct: 115 IAGNKCDLSDIREVPLKDAKEYAESIGAI--VVETSAKNAINIEELFQGISRQI 166
>sp|P32254|RASS_DICDI Ras-like protein rasS OS=Dictyostelium discoideum GN=rasS PE=2 SV=1
Length = 194
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN-RQS 74
+ NKCDL REV E EE+ + + +ETSAK+ NV E+FY L E+K RQS
Sbjct: 113 LVGNKCDLNEYREVSTAEGEELAKKLN--CKFLETSAKERINVSESFYELVREVKKARQS 170
Query: 75 ATLCNEPINTDNTNSPI 91
N NT+ PI
Sbjct: 171 NQHSNS--QEQNTDQPI 185
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
+ NKCD +R+V + E++ I + METSAK + N+E AF+ LA ++K +
Sbjct: 118 ILGNKCDANDKRQVSREQGEKLAASFG-IKF-METSAKANINIENAFFTLARDIKAKMDK 175
Query: 76 TLCNEPINTDNTNSPITLSNDTKSIRNKC 104
L N IT KS +C
Sbjct: 176 KLEGNSPQGSNQGVKITPDQQKKSSFFRC 204
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYV--METSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCD+ +R+V ++E GE + + + METSAK + NVE AF+ LA ++K +
Sbjct: 118 ILGNKCDVNDKRQV----SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
Query: 74 SATLCNEPINTDNTNSPITLSNDTKSIRNKC 104
L N IT +S +C
Sbjct: 174 DKKLEGNSPQGSNQGVKITPDQQKRSSFFRC 204
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYV--METSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCD+ +R+V ++E GE + + + METSAK + NVE AF+ LA ++K +
Sbjct: 118 ILGNKCDVNDKRQV----SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
Query: 74 SATLCNEPINTDNTNSPITLSNDTKSIRNKC 104
L N IT +S +C
Sbjct: 174 DKKLEGNSPQGSNQGVKITPDQQKRSSFFRC 204
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYV--METSAKDSTNVEEAFYCLANELKNRQ 73
+ NKCD+ +R+V ++E GE + + + METSAK + NVE AF+ LA ++K +
Sbjct: 118 ILGNKCDVNDKRQV----SKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
Query: 74 SATLCNEPINTDNTNSPITLSNDTKSIRNKC 104
L N IT +S +C
Sbjct: 174 DKKLEGNSPQGSNQGVKITPDQQKRSSFFRC 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,981,200
Number of Sequences: 539616
Number of extensions: 1310761
Number of successful extensions: 4081
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 382
Number of HSP's that attempted gapping in prelim test: 3661
Number of HSP's gapped (non-prelim): 534
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)