Query psy5780
Match_columns 106
No_of_seqs 171 out of 1324
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 17:48:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0092|consensus 99.7 1.1E-16 2.4E-21 104.1 7.3 90 9-106 108-200 (200)
2 KOG0084|consensus 99.7 3.2E-16 6.9E-21 102.2 8.9 93 6-106 109-205 (205)
3 KOG0078|consensus 99.7 3.9E-16 8.5E-21 102.7 7.7 68 5-74 111-178 (207)
4 cd04126 Rab20 Rab20 subfamily. 99.6 8.3E-15 1.8E-19 98.4 8.8 89 9-105 98-220 (220)
5 KOG0091|consensus 99.6 9.1E-15 2E-19 93.4 8.4 89 10-106 115-213 (213)
6 KOG0394|consensus 99.5 2.7E-14 5.8E-19 92.6 7.6 90 10-106 117-210 (210)
7 PTZ00099 rab6; Provisional 99.5 1.3E-13 2.8E-18 89.7 9.5 63 10-74 84-146 (176)
8 KOG0094|consensus 99.5 5.1E-14 1.1E-18 92.1 7.2 62 11-74 128-189 (221)
9 KOG0087|consensus 99.5 7.3E-14 1.6E-18 92.2 7.4 66 7-74 115-180 (222)
10 cd04121 Rab40 Rab40 subfamily. 99.5 2.3E-13 4.9E-18 89.5 8.9 63 10-74 109-171 (189)
11 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 2.5E-13 5.4E-18 89.5 8.9 64 9-74 108-172 (201)
12 KOG0093|consensus 99.5 4.7E-14 1E-18 88.8 5.0 66 7-74 122-187 (193)
13 cd04144 Ras2 Ras2 subfamily. 99.5 2.8E-13 6.1E-18 88.6 9.0 63 10-74 105-167 (190)
14 KOG0079|consensus 99.5 8.6E-14 1.9E-18 87.8 5.8 88 9-105 110-198 (198)
15 cd04112 Rab26 Rab26 subfamily. 99.4 1.1E-12 2.3E-17 85.9 9.4 63 10-74 105-167 (191)
16 KOG0088|consensus 99.4 3.6E-13 7.8E-18 85.9 6.5 64 9-74 116-179 (218)
17 PLN03110 Rab GTPase; Provision 99.4 1.9E-12 4.1E-17 86.5 10.3 64 9-74 115-178 (216)
18 cd04110 Rab35 Rab35 subfamily. 99.4 1.3E-12 2.9E-17 86.1 9.4 63 10-74 109-171 (199)
19 KOG0097|consensus 99.4 1.3E-12 2.8E-17 82.1 8.5 66 7-74 112-177 (215)
20 cd04111 Rab39 Rab39 subfamily. 99.4 2.3E-12 5E-17 85.8 10.0 63 10-74 108-170 (211)
21 KOG0098|consensus 99.4 4.1E-13 8.8E-18 87.4 5.5 65 8-74 108-172 (216)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 3.3E-12 7.1E-17 86.5 10.0 63 10-74 116-192 (232)
23 cd04120 Rab12 Rab12 subfamily. 99.4 2.5E-12 5.3E-17 85.4 9.1 65 9-74 103-167 (202)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 1.7E-12 3.6E-17 83.8 7.8 63 10-74 106-168 (172)
25 KOG0086|consensus 99.4 1.5E-12 3.2E-17 82.7 6.8 79 7-93 110-190 (214)
26 KOG0080|consensus 99.4 6.7E-13 1.5E-17 84.7 5.2 65 8-74 114-178 (209)
27 cd01873 RhoBTB RhoBTB subfamil 99.4 1.5E-12 3.3E-17 85.9 6.6 57 10-68 119-194 (195)
28 KOG0083|consensus 99.4 3.3E-13 7.1E-18 84.0 2.6 65 8-74 100-164 (192)
29 PLN03118 Rab family protein; P 99.3 1.1E-11 2.4E-16 82.3 9.5 63 10-74 119-181 (211)
30 KOG0081|consensus 99.3 2.8E-12 6E-17 81.9 6.2 66 10-77 123-188 (219)
31 cd04125 RabA_like RabA-like su 99.3 1.5E-11 3.2E-16 80.1 9.8 64 9-74 103-166 (188)
32 cd04133 Rop_like Rop subfamily 99.3 3.7E-12 8.1E-17 82.8 6.9 59 10-70 104-173 (176)
33 cd04118 Rab24 Rab24 subfamily. 99.3 1.7E-11 3.7E-16 80.0 10.0 63 10-74 104-170 (193)
34 KOG0395|consensus 99.3 8.3E-12 1.8E-16 82.6 7.6 65 8-74 105-169 (196)
35 cd04132 Rho4_like Rho4-like su 99.3 1.3E-11 2.8E-16 80.2 8.4 63 10-74 104-171 (187)
36 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 6.3E-12 1.4E-16 82.1 6.9 59 10-70 108-180 (182)
37 cd04122 Rab14 Rab14 subfamily. 99.3 1.3E-11 2.8E-16 78.7 7.7 61 9-71 105-165 (166)
38 cd04127 Rab27A Rab27a subfamil 99.3 1.6E-11 3.4E-16 79.2 7.6 61 10-72 119-179 (180)
39 cd01875 RhoG RhoG subfamily. 99.3 1.4E-11 3E-16 80.8 7.3 60 10-71 106-178 (191)
40 PLN03108 Rab family protein; P 99.3 5.2E-11 1.1E-15 79.2 10.1 64 9-74 109-172 (210)
41 cd04131 Rnd Rnd subfamily. Th 99.3 1.2E-11 2.5E-16 80.5 6.9 59 10-70 104-176 (178)
42 PTZ00369 Ras-like protein; Pro 99.3 1.7E-11 3.8E-16 80.0 7.5 64 9-74 108-171 (189)
43 cd04134 Rho3 Rho3 subfamily. 99.3 3.3E-11 7.1E-16 78.8 7.5 63 10-73 103-177 (189)
44 cd04117 Rab15 Rab15 subfamily. 99.3 2.6E-11 5.7E-16 77.2 6.9 57 10-68 104-160 (161)
45 cd04175 Rap1 Rap1 subgroup. T 99.2 2.8E-11 6.1E-16 76.9 6.6 60 9-70 104-163 (164)
46 cd04103 Centaurin_gamma Centau 99.2 2.3E-11 5E-16 77.7 5.9 58 10-68 98-157 (158)
47 cd01867 Rab8_Rab10_Rab13_like 99.2 6E-11 1.3E-15 75.8 7.8 61 9-71 106-166 (167)
48 cd01865 Rab3 Rab3 subfamily. 99.2 5.7E-11 1.2E-15 75.8 7.7 60 10-71 105-164 (165)
49 cd04140 ARHI_like ARHI subfami 99.2 4.3E-11 9.4E-16 76.3 6.8 56 10-67 107-162 (165)
50 cd04109 Rab28 Rab28 subfamily. 99.2 7.4E-11 1.6E-15 78.6 7.9 61 10-72 108-168 (215)
51 cd01874 Cdc42 Cdc42 subfamily. 99.2 5.4E-11 1.2E-15 77.0 6.8 59 10-69 104-174 (175)
52 cd04136 Rap_like Rap-like subf 99.2 5.5E-11 1.2E-15 75.2 6.7 58 10-69 105-162 (163)
53 smart00173 RAS Ras subfamily o 99.2 8.2E-11 1.8E-15 74.6 7.5 59 10-70 104-162 (164)
54 cd04142 RRP22 RRP22 subfamily. 99.2 8E-11 1.7E-15 77.8 7.5 64 9-74 114-178 (198)
55 cd04145 M_R_Ras_like M-Ras/R-R 99.2 8.6E-11 1.9E-15 74.3 7.3 59 9-69 105-163 (164)
56 PF00071 Ras: Ras family; Int 99.2 1.1E-10 2.5E-15 73.8 7.6 59 10-70 103-161 (162)
57 KOG0095|consensus 99.2 7.7E-12 1.7E-16 79.2 2.1 65 7-73 108-172 (213)
58 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 2.5E-10 5.4E-15 76.9 9.5 63 10-74 104-180 (222)
59 cd01871 Rac1_like Rac1-like su 99.2 6.3E-11 1.4E-15 76.6 6.2 58 10-68 104-173 (174)
60 cd04146 RERG_RasL11_like RERG/ 99.2 7.6E-11 1.7E-15 75.0 6.4 60 9-70 104-164 (165)
61 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 1.3E-10 2.8E-15 74.0 7.4 60 10-71 106-165 (166)
62 cd04119 RJL RJL (RabJ-Like) su 99.2 1.3E-10 2.8E-15 73.5 7.2 59 10-70 109-167 (168)
63 smart00174 RHO Rho (Ras homolo 99.2 7.8E-11 1.7E-15 75.4 6.1 59 10-70 101-172 (174)
64 cd04129 Rho2 Rho2 subfamily. 99.2 1.6E-10 3.6E-15 75.3 7.5 63 10-74 104-177 (187)
65 cd04148 RGK RGK subfamily. Th 99.2 1.8E-10 3.8E-15 77.3 7.8 63 10-74 105-167 (221)
66 cd04176 Rap2 Rap2 subgroup. T 99.2 1.4E-10 3.1E-15 73.5 6.6 58 10-69 105-162 (163)
67 cd04139 RalA_RalB RalA/RalB su 99.1 2.5E-10 5.5E-15 72.0 7.5 60 10-71 104-163 (164)
68 cd01866 Rab2 Rab2 subfamily. 99.1 2.8E-10 6.1E-15 72.8 7.7 61 9-71 107-167 (168)
69 smart00176 RAN Ran (Ras-relate 99.1 2.3E-10 5E-15 75.9 7.3 60 10-73 98-157 (200)
70 cd04138 H_N_K_Ras_like H-Ras/N 99.1 2.2E-10 4.7E-15 72.1 7.0 57 10-69 105-161 (162)
71 cd04106 Rab23_lke Rab23-like s 99.1 2.2E-10 4.8E-15 72.4 6.9 57 10-68 105-161 (162)
72 cd01868 Rab11_like Rab11-like. 99.1 3.7E-10 8E-15 71.7 7.3 58 10-69 107-164 (165)
73 cd04177 RSR1 RSR1 subgroup. R 99.1 4.2E-10 9.1E-15 71.9 7.4 62 9-71 104-165 (168)
74 cd04116 Rab9 Rab9 subfamily. 99.1 3.6E-10 7.9E-15 72.1 6.8 57 10-68 113-169 (170)
75 cd04113 Rab4 Rab4 subfamily. 99.1 3.5E-10 7.6E-15 71.5 6.7 59 8-68 102-160 (161)
76 cd01864 Rab19 Rab19 subfamily. 99.1 4.4E-10 9.5E-15 71.5 7.1 59 9-68 106-164 (165)
77 PLN03071 GTP-binding nuclear p 99.1 4.4E-10 9.6E-15 75.3 6.8 61 10-74 116-176 (219)
78 cd04115 Rab33B_Rab33A Rab33B/R 99.1 5.1E-10 1.1E-14 71.7 6.8 58 10-69 108-168 (170)
79 cd04135 Tc10 TC10 subfamily. 99.1 5.9E-10 1.3E-14 71.3 7.0 60 9-69 102-173 (174)
80 cd04101 RabL4 RabL4 (Rab-like4 99.1 7.8E-10 1.7E-14 70.1 7.4 58 10-69 106-163 (164)
81 cd00877 Ran Ran (Ras-related n 99.1 5.5E-10 1.2E-14 71.5 6.7 58 11-72 104-161 (166)
82 smart00175 RAB Rab subfamily o 99.1 9.3E-10 2E-14 69.5 7.5 60 10-71 104-163 (164)
83 cd04128 Spg1 Spg1p. Spg1p (se 99.1 7.8E-10 1.7E-14 72.1 6.8 61 10-73 104-169 (182)
84 cd04108 Rab36_Rab34 Rab34/Rab3 99.0 1.3E-09 2.7E-14 70.2 7.4 60 11-72 106-167 (170)
85 cd04137 RheB Rheb (Ras Homolog 99.0 2.1E-09 4.5E-14 69.3 8.4 63 10-74 105-167 (180)
86 cd01862 Rab7 Rab7 subfamily. 99.0 2.1E-09 4.6E-14 68.4 8.1 63 10-73 108-170 (172)
87 cd01860 Rab5_related Rab5-rela 99.0 1.8E-09 3.8E-14 68.3 7.0 58 10-69 105-162 (163)
88 cd04114 Rab30 Rab30 subfamily. 99.0 3E-09 6.4E-14 67.7 7.7 59 9-69 110-168 (169)
89 cd04123 Rab21 Rab21 subfamily. 99.0 2.8E-09 6.2E-14 66.9 7.4 58 10-69 104-161 (162)
90 cd04130 Wrch_1 Wrch-1 subfamil 99.0 1.8E-09 3.9E-14 69.4 6.4 55 10-66 103-170 (173)
91 cd04143 Rhes_like Rhes_like su 99.0 2.8E-09 6E-14 72.8 7.4 59 10-69 112-170 (247)
92 cd04158 ARD1 ARD1 subfamily. 99.0 3.1E-09 6.7E-14 68.1 7.2 62 10-74 99-165 (169)
93 cd04124 RabL2 RabL2 subfamily. 99.0 2.7E-09 5.8E-14 67.9 6.8 58 10-72 103-160 (161)
94 cd01870 RhoA_like RhoA-like su 99.0 3.8E-09 8.3E-14 67.6 7.2 59 10-69 104-174 (175)
95 cd01892 Miro2 Miro2 subfamily. 99.0 2E-09 4.3E-14 69.2 5.8 59 10-70 107-166 (169)
96 cd00876 Ras Ras family. The R 98.9 3.8E-09 8.3E-14 66.2 6.5 57 10-68 103-159 (160)
97 cd01897 NOG NOG1 is a nucleola 98.9 2.4E-09 5.3E-14 68.0 5.4 55 11-69 113-167 (168)
98 cd01861 Rab6 Rab6 subfamily. 98.9 5.2E-09 1.1E-13 66.0 6.7 56 11-68 105-160 (161)
99 PLN00223 ADP-ribosylation fact 98.9 7E-09 1.5E-13 67.5 7.4 60 10-72 117-180 (181)
100 cd04149 Arf6 Arf6 subfamily. 98.9 8.7E-09 1.9E-13 66.2 6.3 55 10-67 109-167 (168)
101 cd01863 Rab18 Rab18 subfamily. 98.9 1.3E-08 2.8E-13 64.3 6.9 57 9-68 104-160 (161)
102 TIGR02528 EutP ethanolamine ut 98.9 1E-08 2.3E-13 63.6 6.3 53 12-66 89-141 (142)
103 PTZ00133 ADP-ribosylation fact 98.8 2.2E-08 4.8E-13 65.2 7.6 61 10-73 117-181 (182)
104 cd01893 Miro1 Miro1 subfamily. 98.8 1.2E-08 2.5E-13 65.2 5.8 60 10-70 102-164 (166)
105 cd04154 Arl2 Arl2 subfamily. 98.8 1.5E-08 3.3E-13 65.0 6.3 54 10-67 114-172 (173)
106 PRK04213 GTP-binding protein; 98.8 1.2E-08 2.5E-13 67.0 5.8 58 10-73 129-195 (201)
107 cd00879 Sar1 Sar1 subfamily. 98.8 1.3E-08 2.8E-13 66.1 6.0 56 10-68 119-189 (190)
108 cd04147 Ras_dva Ras-dva subfam 98.8 2.8E-08 6E-13 65.4 7.6 59 10-70 103-163 (198)
109 PRK12299 obgE GTPase CgtA; Rev 98.8 2.1E-08 4.6E-13 71.3 6.8 63 10-74 270-332 (335)
110 cd00157 Rho Rho (Ras homology) 98.8 1.6E-08 3.6E-13 64.2 5.7 56 10-67 103-170 (171)
111 cd00154 Rab Rab family. Rab G 98.8 2.6E-08 5.6E-13 61.9 6.2 55 10-66 104-158 (159)
112 cd04162 Arl9_Arfrp2_like Arl9/ 98.8 4.7E-09 1E-13 67.1 2.8 56 10-67 98-163 (164)
113 TIGR00157 ribosome small subun 98.8 9.3E-09 2E-13 70.2 4.3 55 10-67 66-120 (245)
114 smart00177 ARF ARF-like small 98.8 6.1E-09 1.3E-13 67.3 3.1 57 10-69 113-173 (175)
115 cd04150 Arf1_5_like Arf1-Arf5- 98.7 7.5E-09 1.6E-13 65.8 2.8 54 10-67 100-158 (159)
116 PRK15467 ethanolamine utilizat 98.7 5.2E-08 1.1E-12 62.2 6.5 60 10-74 90-151 (158)
117 cd01890 LepA LepA subfamily. 98.7 4E-08 8.7E-13 63.1 5.8 56 10-69 118-176 (179)
118 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.7 5E-08 1.1E-12 63.4 6.0 62 10-74 108-174 (183)
119 cd01898 Obg Obg subfamily. Th 98.7 3.7E-08 7.9E-13 62.6 5.2 56 10-68 113-169 (170)
120 cd04157 Arl6 Arl6 subfamily. 98.7 5.1E-08 1.1E-12 61.4 5.8 54 10-67 103-161 (162)
121 KOG0393|consensus 98.7 3.8E-08 8.2E-13 65.1 4.8 63 9-72 107-181 (198)
122 cd04151 Arl1 Arl1 subfamily. 98.7 1.9E-08 4.1E-13 63.6 3.2 54 10-67 99-157 (158)
123 cd04160 Arfrp1 Arfrp1 subfamil 98.7 6.7E-08 1.4E-12 61.3 5.7 55 10-67 106-166 (167)
124 cd04156 ARLTS1 ARLTS1 subfamil 98.7 3.7E-08 8E-13 62.1 4.5 54 10-67 100-159 (160)
125 cd01879 FeoB Ferrous iron tran 98.6 9.7E-08 2.1E-12 59.8 6.0 56 10-68 100-155 (158)
126 KOG4252|consensus 98.6 3.6E-08 7.9E-13 64.3 3.8 66 10-77 123-188 (246)
127 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.6 1.5E-07 3.3E-12 60.6 6.4 54 10-67 115-173 (174)
128 PTZ00132 GTP-binding nuclear p 98.6 2.4E-07 5.3E-12 61.5 7.0 61 10-74 112-172 (215)
129 cd00878 Arf_Arl Arf (ADP-ribos 98.6 9.6E-08 2.1E-12 60.1 4.1 55 9-67 98-157 (158)
130 cd01878 HflX HflX subfamily. 98.5 6.8E-08 1.5E-12 63.6 3.3 52 10-68 152-203 (204)
131 TIGR02729 Obg_CgtA Obg family 98.5 2.6E-07 5.5E-12 65.6 6.0 57 10-69 272-328 (329)
132 cd01881 Obg_like The Obg-like 98.5 1.4E-07 2.9E-12 60.1 4.1 57 10-68 119-175 (176)
133 cd01894 EngA1 EngA1 subfamily. 98.5 3.4E-07 7.4E-12 57.1 4.9 52 10-68 104-156 (157)
134 cd01855 YqeH YqeH. YqeH is an 98.4 1.1E-06 2.5E-11 57.4 7.2 60 10-71 60-126 (190)
135 cd04171 SelB SelB subfamily. 98.4 3.7E-07 8.1E-12 57.4 4.5 53 13-67 106-163 (164)
136 smart00178 SAR Sar1p-like memb 98.4 1E-06 2.3E-11 57.3 6.2 56 10-68 117-183 (184)
137 TIGR00437 feoB ferrous iron tr 98.4 5.4E-07 1.2E-11 68.4 5.4 58 9-69 97-154 (591)
138 PRK15494 era GTPase Era; Provi 98.4 2.5E-07 5.3E-12 65.9 3.2 60 9-72 158-218 (339)
139 PRK03003 GTP-binding protein D 98.4 7E-07 1.5E-11 66.1 5.5 64 9-73 320-385 (472)
140 PRK00089 era GTPase Era; Revie 98.4 3E-07 6.6E-12 63.8 3.4 61 10-71 112-172 (292)
141 TIGR00436 era GTP-binding prot 98.4 2E-07 4.4E-12 64.3 2.4 62 9-72 105-166 (270)
142 cd04155 Arl3 Arl3 subfamily. 98.4 1.5E-06 3.3E-11 55.4 6.3 55 10-67 114-172 (173)
143 cd04163 Era Era subfamily. Er 98.4 9.1E-07 2E-11 55.2 5.2 57 11-68 111-167 (168)
144 TIGR00231 small_GTP small GTP- 98.4 1.6E-06 3.4E-11 53.4 6.0 52 11-65 108-159 (161)
145 PRK12297 obgE GTPase CgtA; Rev 98.3 2.4E-06 5.2E-11 62.6 7.5 59 10-74 273-331 (424)
146 cd04164 trmE TrmE (MnmE, ThdF, 98.3 1.2E-06 2.7E-11 54.5 5.3 51 10-69 106-156 (157)
147 KOG4423|consensus 98.3 2.1E-06 4.5E-11 56.4 6.3 65 9-74 133-198 (229)
148 cd04161 Arl2l1_Arl13_like Arl2 98.3 3.8E-07 8.3E-12 58.4 2.9 55 10-67 99-166 (167)
149 PF00025 Arf: ADP-ribosylation 98.3 4E-06 8.7E-11 54.3 7.5 57 10-69 114-175 (175)
150 cd04159 Arl10_like Arl10-like 98.3 8E-07 1.7E-11 55.2 3.8 54 10-67 100-158 (159)
151 cd00882 Ras_like_GTPase Ras-li 98.3 2.5E-06 5.5E-11 51.8 6.0 57 8-66 99-156 (157)
152 cd01859 MJ1464 MJ1464. This f 98.3 1.2E-06 2.7E-11 55.4 4.5 58 10-71 40-97 (156)
153 TIGR00101 ureG urease accessor 98.3 2.1E-06 4.5E-11 57.0 5.7 54 15-69 141-195 (199)
154 cd01888 eIF2_gamma eIF2-gamma 98.3 7.9E-07 1.7E-11 58.9 3.7 57 13-70 139-199 (203)
155 PRK12296 obgE GTPase CgtA; Rev 98.3 2.4E-06 5.3E-11 63.6 6.2 62 10-74 283-344 (500)
156 cd01895 EngA2 EngA2 subfamily. 98.3 3.2E-06 7E-11 53.3 5.9 58 10-68 112-173 (174)
157 cd00880 Era_like Era (E. coli 98.3 1.8E-06 3.8E-11 53.2 4.6 58 9-68 102-162 (163)
158 TIGR00073 hypB hydrogenase acc 98.3 2.1E-06 4.6E-11 57.0 5.1 56 12-68 149-205 (207)
159 TIGR03594 GTPase_EngA ribosome 98.3 3.4E-06 7.3E-11 61.4 6.5 61 10-72 282-346 (429)
160 cd01887 IF2_eIF5B IF2/eIF5B (i 98.3 2.6E-06 5.7E-11 53.8 5.3 59 10-69 101-165 (168)
161 cd00881 GTP_translation_factor 98.2 2.2E-06 4.8E-11 55.0 5.0 60 10-70 113-187 (189)
162 cd01896 DRG The developmentall 98.2 4.3E-06 9.4E-11 56.6 6.4 51 10-69 175-225 (233)
163 PRK12288 GTPase RsgA; Reviewed 98.2 2.3E-06 5E-11 61.2 4.9 58 9-68 148-206 (347)
164 cd01889 SelB_euk SelB subfamil 98.2 2.8E-06 6.2E-11 55.5 4.9 59 11-70 120-186 (192)
165 PRK12289 GTPase RsgA; Reviewed 98.2 3.1E-06 6.8E-11 60.7 5.1 56 10-69 119-174 (352)
166 PRK00454 engB GTP-binding prot 98.2 3.6E-06 7.8E-11 54.7 5.0 59 10-70 134-194 (196)
167 PRK05291 trmE tRNA modificatio 98.2 3.6E-06 7.9E-11 62.0 5.0 52 10-71 320-371 (449)
168 PRK03003 GTP-binding protein D 98.2 4.3E-06 9.3E-11 61.9 5.3 56 10-71 145-200 (472)
169 PRK12298 obgE GTPase CgtA; Rev 98.1 7.4E-06 1.6E-10 59.5 6.3 60 11-72 275-335 (390)
170 PF02421 FeoB_N: Ferrous iron 98.1 1.2E-07 2.7E-12 60.7 -2.6 55 8-65 102-156 (156)
171 cd01849 YlqF_related_GTPase Yl 98.1 6.9E-06 1.5E-10 52.1 5.3 60 8-70 26-85 (155)
172 KOG3883|consensus 98.1 7.6E-06 1.7E-10 52.4 5.3 64 9-74 116-179 (198)
173 PRK00098 GTPase RsgA; Reviewed 98.1 3.8E-06 8.2E-11 58.9 4.4 56 9-67 109-164 (298)
174 TIGR01393 lepA GTP-binding pro 98.1 7.5E-06 1.6E-10 62.3 5.9 58 10-71 121-181 (595)
175 TIGR03597 GTPase_YqeH ribosome 98.1 1.5E-05 3.2E-10 57.3 6.9 55 11-68 90-151 (360)
176 COG0378 HypB Ni2+-binding GTPa 98.1 8.7E-06 1.9E-10 53.8 5.0 53 15-68 146-199 (202)
177 PF00009 GTP_EFTU: Elongation 98.1 6.4E-06 1.4E-10 53.7 4.1 60 10-70 121-187 (188)
178 cd01854 YjeQ_engC YjeQ/EngC. 98.0 9E-06 2E-10 56.7 4.6 54 10-67 108-161 (287)
179 PF10662 PduV-EutP: Ethanolami 98.0 2.6E-05 5.6E-10 49.3 6.0 53 11-66 89-142 (143)
180 TIGR03156 GTP_HflX GTP-binding 98.0 1.8E-05 3.9E-10 56.7 5.9 51 10-68 300-350 (351)
181 TIGR00450 mnmE_trmE_thdF tRNA 98.0 2.2E-05 4.7E-10 57.9 6.2 56 10-74 309-364 (442)
182 PRK11058 GTPase HflX; Provisio 98.0 1.9E-05 4.1E-10 58.0 5.6 57 9-72 307-364 (426)
183 COG1159 Era GTPase [General fu 98.0 5.7E-06 1.2E-10 57.7 2.7 63 10-73 113-175 (298)
184 PRK09518 bifunctional cytidyla 98.0 2.1E-05 4.7E-10 60.9 6.0 60 10-72 560-623 (712)
185 PRK05433 GTP-binding protein L 97.9 2.7E-05 5.7E-10 59.4 6.3 59 10-72 125-186 (600)
186 cd01858 NGP_1 NGP-1. Autoanti 97.9 2.2E-05 4.7E-10 49.9 4.8 56 11-69 39-94 (157)
187 PRK00093 GTP-binding protein D 97.9 2.8E-05 6.2E-10 56.8 5.7 60 10-71 283-345 (435)
188 PRK13796 GTPase YqeH; Provisio 97.9 5.5E-05 1.2E-09 54.5 6.7 55 11-68 96-157 (365)
189 cd01876 YihA_EngB The YihA (En 97.9 2E-05 4.4E-10 49.2 3.9 58 10-68 109-169 (170)
190 cd01891 TypA_BipA TypA (tyrosi 97.9 2.6E-05 5.6E-10 51.0 4.4 50 10-61 116-173 (194)
191 TIGR00487 IF-2 translation ini 97.9 4.6E-05 1E-09 58.0 6.2 54 10-67 186-247 (587)
192 PRK09518 bifunctional cytidyla 97.9 3.7E-05 7.9E-10 59.7 5.7 59 8-72 380-438 (712)
193 cd01856 YlqF YlqF. Proteins o 97.8 4.7E-05 1E-09 49.0 5.4 57 11-71 46-102 (171)
194 TIGR00475 selB selenocysteine- 97.8 3.1E-05 6.7E-10 58.9 5.1 62 10-72 101-168 (581)
195 PRK10463 hydrogenase nickel in 97.8 4.2E-05 9.1E-10 53.5 5.3 56 12-68 231-287 (290)
196 PRK09554 feoB ferrous iron tra 97.8 1.5E-05 3.3E-10 62.2 3.2 59 8-69 109-167 (772)
197 PRK00093 GTP-binding protein D 97.8 5.9E-05 1.3E-09 55.1 5.9 52 10-68 108-160 (435)
198 PRK04000 translation initiatio 97.8 4.4E-05 9.6E-10 55.8 4.6 57 13-70 141-201 (411)
199 TIGR03594 GTPase_EngA ribosome 97.8 8.4E-05 1.8E-09 54.2 6.0 57 10-72 106-162 (429)
200 COG0481 LepA Membrane GTPase L 97.8 6.5E-05 1.4E-09 55.7 5.4 60 10-73 127-189 (603)
201 COG4917 EutP Ethanolamine util 97.7 0.00017 3.8E-09 44.8 5.6 53 12-67 91-143 (148)
202 TIGR03596 GTPase_YlqF ribosome 97.7 0.00016 3.5E-09 50.1 6.2 59 11-73 48-106 (276)
203 KOG0462|consensus 97.7 8.8E-05 1.9E-09 55.8 5.0 60 10-72 176-237 (650)
204 COG2262 HflX GTPases [General 97.7 9.5E-05 2.1E-09 53.7 4.9 60 7-73 300-359 (411)
205 COG1162 Predicted GTPases [Gen 97.7 2.9E-05 6.3E-10 54.4 2.2 60 9-70 108-167 (301)
206 KOG1707|consensus 97.6 2.4E-05 5.2E-10 58.9 1.8 62 10-72 114-177 (625)
207 CHL00189 infB translation init 97.6 0.00017 3.6E-09 56.3 6.5 56 10-69 346-409 (742)
208 PRK01889 GTPase RsgA; Reviewed 97.6 3.1E-05 6.8E-10 55.6 2.3 54 9-66 140-193 (356)
209 KOG0096|consensus 97.6 1.9E-05 4.2E-10 52.0 1.1 60 10-73 113-172 (216)
210 PRK10512 selenocysteinyl-tRNA- 97.6 0.00011 2.3E-09 56.3 4.9 59 10-69 102-165 (614)
211 PRK05306 infB translation init 97.6 0.00017 3.6E-09 56.7 6.0 55 10-68 388-450 (787)
212 TIGR03680 eif2g_arch translati 97.6 0.00011 2.3E-09 53.6 4.2 57 13-70 136-196 (406)
213 TIGR03598 GTPase_YsxC ribosome 97.6 5.6E-05 1.2E-09 48.8 2.5 49 10-59 128-179 (179)
214 COG1100 GTPase SAR1 and relate 97.6 0.00045 9.7E-09 45.6 6.9 64 10-74 110-189 (219)
215 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00035 7.6E-09 48.7 6.1 58 11-72 51-108 (287)
216 COG0536 Obg Predicted GTPase [ 97.5 0.00025 5.4E-09 50.6 5.2 62 10-73 274-336 (369)
217 PRK13768 GTPase; Provisional 97.5 0.00031 6.7E-09 48.2 5.5 58 10-70 161-247 (253)
218 TIGR00491 aIF-2 translation in 97.5 0.00044 9.5E-09 52.8 6.6 25 44-69 191-215 (590)
219 KOG1489|consensus 97.5 0.00023 5.1E-09 50.4 4.8 54 10-67 311-364 (366)
220 cd04165 GTPBP1_like GTPBP1-lik 97.5 0.00032 6.9E-09 47.4 5.1 57 9-66 136-219 (224)
221 cd04102 RabL3 RabL3 (Rab-like3 97.4 0.00033 7.2E-09 46.6 4.8 47 9-57 127-177 (202)
222 cd01857 HSR1_MMR1 HSR1/MMR1. 97.4 0.00026 5.7E-09 44.2 3.8 44 10-57 41-84 (141)
223 PRK09866 hypothetical protein; 97.4 0.00073 1.6E-08 52.1 6.8 55 12-67 290-350 (741)
224 COG1160 Predicted GTPases [Gen 97.4 0.00077 1.7E-08 49.6 6.4 56 9-70 110-165 (444)
225 COG0532 InfB Translation initi 97.3 0.00089 1.9E-08 50.1 6.5 58 8-68 104-168 (509)
226 TIGR00750 lao LAO/AO transport 97.3 0.00029 6.3E-09 49.5 3.6 58 11-70 172-238 (300)
227 COG0486 ThdF Predicted GTPase 97.3 0.00081 1.8E-08 49.6 5.9 57 9-72 322-378 (454)
228 KOG0075|consensus 97.3 0.0002 4.3E-09 45.7 2.4 57 10-69 121-181 (186)
229 PTZ00327 eukaryotic translatio 97.3 0.00051 1.1E-08 51.0 4.8 57 13-70 173-233 (460)
230 TIGR00483 EF-1_alpha translati 97.2 0.00043 9.2E-09 50.7 4.2 50 12-62 142-199 (426)
231 KOG0070|consensus 97.2 0.00085 1.8E-08 43.9 4.8 59 10-72 117-180 (181)
232 COG1160 Predicted GTPases [Gen 97.2 0.0015 3.2E-08 48.1 6.6 63 9-72 287-353 (444)
233 KOG0073|consensus 97.2 0.0025 5.5E-08 41.3 6.8 59 10-72 116-180 (185)
234 TIGR01394 TypA_BipA GTP-bindin 97.1 0.00085 1.8E-08 51.3 4.6 61 9-71 114-192 (594)
235 PRK09435 membrane ATPase/prote 97.1 0.0015 3.3E-08 46.7 5.2 59 14-74 197-264 (332)
236 KOG0072|consensus 97.0 0.00059 1.3E-08 43.4 2.4 59 10-72 118-181 (182)
237 COG0370 FeoB Fe2+ transport sy 97.0 0.00087 1.9E-08 51.5 3.6 61 8-71 105-165 (653)
238 PRK12317 elongation factor 1-a 96.9 0.0011 2.3E-08 48.7 3.8 49 13-62 141-197 (425)
239 PRK14845 translation initiatio 96.9 0.0029 6.2E-08 51.3 6.4 27 43-70 647-673 (1049)
240 PRK04004 translation initiatio 96.9 0.0042 9.2E-08 47.5 6.7 25 44-69 193-217 (586)
241 KOG3905|consensus 96.8 0.0043 9.3E-08 44.6 5.8 63 9-73 220-293 (473)
242 cd01883 EF1_alpha Eukaryotic e 96.8 0.00074 1.6E-08 45.2 1.6 47 12-59 138-194 (219)
243 cd01899 Ygr210 Ygr210 subfamil 96.8 0.0023 5.1E-08 45.4 4.1 59 10-73 213-272 (318)
244 KOG1673|consensus 96.7 0.002 4.3E-08 41.6 3.3 63 8-73 122-189 (205)
245 KOG1532|consensus 96.7 0.0061 1.3E-07 42.8 5.9 63 9-73 179-267 (366)
246 cd04166 CysN_ATPS CysN_ATPS su 96.7 0.0016 3.5E-08 43.2 3.0 47 13-60 132-184 (208)
247 KOG0076|consensus 96.7 0.0016 3.5E-08 42.6 2.7 61 10-73 125-190 (197)
248 PRK12736 elongation factor Tu; 96.7 0.0033 7E-08 45.8 4.4 59 10-69 126-200 (394)
249 COG5257 GCD11 Translation init 96.6 0.002 4.4E-08 46.0 2.9 61 13-74 142-206 (415)
250 KOG1145|consensus 96.6 0.01 2.2E-07 45.2 6.5 56 9-67 251-313 (683)
251 PLN00023 GTP-binding protein; 96.5 0.0042 9.1E-08 44.4 4.2 31 11-41 151-187 (334)
252 COG0218 Predicted GTPase [Gene 96.5 0.0032 6.9E-08 41.9 3.2 62 8-71 132-198 (200)
253 cd01884 EF_Tu EF-Tu subfamily. 96.4 0.0082 1.8E-07 39.7 5.0 48 10-58 116-171 (195)
254 COG1163 DRG Predicted GTPase [ 96.4 0.013 2.9E-07 41.9 6.1 51 11-70 239-289 (365)
255 PRK10218 GTP-binding protein; 96.2 0.012 2.6E-07 45.3 5.4 59 10-70 119-195 (607)
256 cd04104 p47_IIGP_like p47 (47- 96.2 0.017 3.6E-07 38.0 5.4 63 11-74 107-188 (197)
257 KOG1490|consensus 96.1 0.02 4.3E-07 43.2 5.8 61 10-71 280-342 (620)
258 COG2229 Predicted GTPase [Gene 96.0 0.036 7.9E-07 36.5 6.1 54 12-68 122-176 (187)
259 PRK05124 cysN sulfate adenylyl 95.9 0.0075 1.6E-07 45.0 2.8 48 13-61 162-216 (474)
260 TIGR00485 EF-Tu translation el 95.8 0.018 3.9E-07 41.9 4.5 46 10-56 126-179 (394)
261 PLN00043 elongation factor 1-a 95.7 0.013 2.8E-07 43.5 3.5 50 10-60 143-203 (447)
262 COG1703 ArgK Putative periplas 95.7 0.023 5.1E-07 40.2 4.5 31 43-74 228-258 (323)
263 KOG1423|consensus 95.7 0.017 3.6E-07 41.2 3.8 27 45-72 247-273 (379)
264 PRK12735 elongation factor Tu; 95.6 0.022 4.7E-07 41.6 4.3 59 10-69 126-202 (396)
265 PRK09602 translation-associate 95.6 0.011 2.3E-07 43.3 2.6 54 10-69 216-270 (396)
266 PF03308 ArgK: ArgK protein; 95.6 0.012 2.7E-07 40.7 2.7 58 13-72 169-232 (266)
267 TIGR02034 CysN sulfate adenyly 95.4 0.024 5.3E-07 41.5 4.1 47 13-60 135-187 (406)
268 KOG0071|consensus 95.4 0.044 9.5E-07 34.9 4.5 57 10-69 117-177 (180)
269 PF03029 ATP_bind_1: Conserved 95.4 0.017 3.6E-07 39.5 2.9 58 10-68 155-235 (238)
270 PF05783 DLIC: Dynein light in 95.1 0.044 9.5E-07 41.1 4.5 62 10-73 195-267 (472)
271 smart00010 small_GTPase Small 94.7 0.01 2.3E-07 35.3 0.3 41 9-59 75-115 (124)
272 CHL00071 tufA elongation facto 94.7 0.046 9.9E-07 40.1 3.7 48 10-58 126-181 (409)
273 PRK05506 bifunctional sulfate 94.6 0.062 1.3E-06 41.5 4.5 48 12-60 158-211 (632)
274 cd04168 TetM_like Tet(M)-like 94.5 0.21 4.6E-06 33.9 6.5 26 44-70 210-235 (237)
275 KOG0466|consensus 94.3 0.044 9.5E-07 39.3 2.7 60 13-73 181-244 (466)
276 KOG1144|consensus 93.9 0.12 2.7E-06 40.9 4.7 29 45-74 663-691 (1064)
277 PTZ00141 elongation factor 1- 93.6 0.069 1.5E-06 39.7 2.9 50 10-60 143-203 (446)
278 COG3276 SelB Selenocysteine-sp 93.6 0.11 2.5E-06 38.4 3.9 58 11-70 102-162 (447)
279 COG2895 CysN GTPases - Sulfate 93.3 0.11 2.3E-06 37.9 3.2 46 13-59 141-192 (431)
280 PRK12740 elongation factor G; 93.2 0.29 6.2E-06 38.1 5.7 28 44-72 237-264 (668)
281 cd04167 Snu114p Snu114p subfam 93.2 0.059 1.3E-06 35.7 1.8 15 10-24 122-136 (213)
282 COG1084 Predicted GTPase [Gene 93.0 0.18 3.8E-06 36.3 3.9 57 11-70 280-336 (346)
283 PLN03127 Elongation factor Tu; 92.9 0.13 2.8E-06 38.3 3.4 60 10-70 175-252 (447)
284 COG5258 GTPBP1 GTPase [General 92.5 0.28 6.1E-06 36.3 4.5 61 10-72 254-340 (527)
285 cd04178 Nucleostemin_like Nucl 92.5 0.18 4E-06 32.6 3.3 16 10-25 29-44 (172)
286 PRK00741 prfC peptide chain re 92.4 0.48 1E-05 36.1 5.9 28 44-72 249-276 (526)
287 PRK00049 elongation factor Tu; 92.3 0.38 8.1E-06 35.2 5.1 46 10-56 126-179 (396)
288 KOG1191|consensus 92.0 0.18 4E-06 38.0 3.2 64 10-74 388-454 (531)
289 PF06858 NOG1: Nucleolar GTP-b 92.0 0.13 2.8E-06 27.6 1.7 13 10-22 46-58 (58)
290 PRK13351 elongation factor G; 91.7 0.6 1.3E-05 36.5 5.9 28 44-72 253-280 (687)
291 COG1161 Predicted GTPases [Gen 90.8 0.39 8.5E-06 34.2 3.8 49 11-62 61-109 (322)
292 KOG0461|consensus 90.0 0.77 1.7E-05 33.7 4.7 59 13-72 124-191 (522)
293 cd00066 G-alpha G protein alph 89.8 0.73 1.6E-05 32.7 4.4 63 10-73 227-314 (317)
294 cd01886 EF-G Elongation factor 89.7 0.4 8.7E-06 33.3 3.0 16 10-25 115-130 (270)
295 PLN03126 Elongation factor Tu; 89.5 0.36 7.9E-06 36.3 2.8 47 10-57 195-249 (478)
296 PRK12739 elongation factor G; 89.2 1.4 3.1E-05 34.6 6.0 26 45-71 254-279 (691)
297 cd04105 SR_beta Signal recogni 89.0 0.55 1.2E-05 31.0 3.2 16 10-25 108-123 (203)
298 KOG1424|consensus 88.7 0.49 1.1E-05 36.0 2.9 41 10-54 204-244 (562)
299 TIGR02836 spore_IV_A stage IV 88.2 0.34 7.3E-06 36.3 1.8 56 7-66 176-233 (492)
300 COG5256 TEF1 Translation elong 88.0 0.47 1E-05 35.1 2.4 48 13-61 147-202 (428)
301 cd01885 EF2 EF2 (for archaea a 87.8 0.92 2E-05 30.6 3.7 15 10-24 124-138 (222)
302 cd01850 CDC_Septin CDC/Septin. 87.4 0.51 1.1E-05 32.9 2.3 41 10-52 142-184 (276)
303 cd04169 RF3 RF3 subfamily. Pe 86.7 1.7 3.7E-05 30.1 4.6 16 10-25 122-137 (267)
304 KOG0077|consensus 86.1 0.42 9.1E-06 31.3 1.2 55 10-67 120-190 (193)
305 smart00275 G_alpha G protein a 85.8 0.63 1.4E-05 33.5 2.2 63 10-73 250-337 (342)
306 PF14331 ImcF-related_N: ImcF- 85.6 1 2.2E-05 31.2 3.1 60 9-73 67-134 (266)
307 KOG2485|consensus 84.6 1.4 3E-05 31.6 3.3 17 10-26 72-88 (335)
308 KOG2423|consensus 84.5 2.1 4.6E-05 32.0 4.3 37 9-46 242-278 (572)
309 PF03193 DUF258: Protein of un 84.2 2.8 6E-05 27.1 4.4 32 33-66 3-34 (161)
310 cd01882 BMS1 Bms1. Bms1 is an 83.4 2 4.2E-05 28.9 3.6 48 10-58 131-184 (225)
311 cd04170 EF-G_bact Elongation f 83.4 3.2 6.9E-05 28.5 4.7 17 9-25 114-130 (268)
312 KOG1143|consensus 82.1 3.7 8E-05 30.6 4.7 52 9-61 301-379 (591)
313 PF08438 MMR_HSR1_C: GTPase of 80.3 2.2 4.7E-05 25.8 2.6 32 17-53 1-32 (109)
314 PTZ00258 GTP-binding protein; 78.8 3 6.4E-05 30.8 3.4 46 10-56 219-266 (390)
315 KOG0090|consensus 78.5 7 0.00015 26.8 4.8 23 44-68 215-237 (238)
316 COG0523 Putative GTPases (G3E 78.1 4.3 9.3E-05 29.1 4.0 44 15-62 149-193 (323)
317 TIGR00484 EF-G translation elo 77.2 5.1 0.00011 31.5 4.5 16 10-25 126-141 (689)
318 KOG0458|consensus 76.9 2.8 6E-05 32.5 2.8 48 13-61 317-373 (603)
319 KOG0082|consensus 76.7 7.1 0.00015 28.5 4.8 63 10-73 261-347 (354)
320 KOG1486|consensus 76.6 10 0.00022 26.8 5.3 51 11-70 238-288 (364)
321 PRK13505 formate--tetrahydrofo 76.3 12 0.00026 29.0 6.0 59 8-70 369-429 (557)
322 KOG1707|consensus 75.8 4.7 0.0001 31.4 3.8 57 10-69 525-582 (625)
323 COG1217 TypA Predicted membran 75.8 3 6.5E-05 31.8 2.7 59 10-71 119-196 (603)
324 KOG2486|consensus 75.3 0.99 2.1E-05 32.0 0.2 60 7-67 244-313 (320)
325 KOG2484|consensus 73.8 5.1 0.00011 29.8 3.4 17 10-26 176-192 (435)
326 KOG0705|consensus 73.6 5.7 0.00012 31.0 3.7 64 9-73 127-192 (749)
327 PRK00007 elongation factor G; 73.5 7.4 0.00016 30.7 4.5 17 9-25 125-141 (693)
328 KOG0463|consensus 73.4 8.4 0.00018 28.8 4.5 60 10-72 272-359 (641)
329 PF09439 SRPRB: Signal recogni 71.9 3.4 7.5E-05 27.2 2.1 17 9-25 110-126 (181)
330 KOG1487|consensus 71.7 2.7 5.8E-05 29.8 1.6 51 11-70 231-281 (358)
331 cd04170 EF-G_bact Elongation f 71.5 6.6 0.00014 26.9 3.5 26 44-70 241-266 (268)
332 COG0050 TufB GTPases - transla 66.3 8.8 0.00019 27.8 3.2 43 10-53 126-176 (394)
333 TIGR00503 prfC peptide chain r 64.9 9.4 0.0002 29.3 3.4 16 10-25 131-146 (527)
334 COG0012 Predicted GTPase, prob 63.1 13 0.00028 27.4 3.7 43 10-54 205-248 (372)
335 cd01852 AIG1 AIG1 (avrRpt2-ind 63.0 28 0.00061 22.5 5.1 60 12-72 117-186 (196)
336 smart00053 DYNc Dynamin, GTPas 61.3 6.3 0.00014 27.1 1.8 19 8-26 189-207 (240)
337 cd01886 EF-G Elongation factor 54.9 12 0.00026 26.0 2.3 26 44-70 243-268 (270)
338 KOG0410|consensus 54.8 19 0.00041 26.4 3.3 47 14-72 297-343 (410)
339 cd04169 RF3 RF3 subfamily. Pe 54.6 12 0.00025 26.0 2.3 26 44-70 240-265 (267)
340 KOG0074|consensus 51.3 5.5 0.00012 25.6 0.2 53 10-66 118-175 (185)
341 KOG1249|consensus 49.5 6.7 0.00014 30.2 0.4 23 48-70 189-211 (572)
342 PF09547 Spore_IV_A: Stage IV 49.4 9.4 0.0002 28.9 1.1 42 7-52 176-217 (492)
343 PF04670 Gtr1_RagA: Gtr1/RagA 47.0 27 0.00058 23.9 3.0 61 9-72 109-178 (232)
344 cd03110 Fer4_NifH_child This p 46.1 57 0.0012 20.6 4.4 33 10-46 142-174 (179)
345 PRK09601 GTP-binding protein Y 45.0 30 0.00066 25.4 3.2 45 10-56 198-243 (364)
346 COG1908 FrhD Coenzyme F420-red 44.0 52 0.0011 20.5 3.6 30 44-74 97-126 (132)
347 TIGR00503 prfC peptide chain r 42.8 21 0.00046 27.4 2.2 28 44-72 250-277 (527)
348 PF02492 cobW: CobW/HypB/UreG, 40.7 12 0.00026 24.0 0.6 11 15-25 145-155 (178)
349 PTZ00416 elongation factor 2; 40.7 7.1 0.00015 31.6 -0.6 15 10-24 143-157 (836)
350 KOG0085|consensus 39.6 58 0.0013 22.9 3.7 63 10-72 265-351 (359)
351 KOG4102|consensus 38.9 11 0.00024 23.1 0.2 8 99-106 59-66 (121)
352 PF00503 G-alpha: G-protein al 35.4 16 0.00034 26.6 0.5 15 10-24 302-316 (389)
353 PLN00116 translation elongatio 35.4 28 0.00061 28.3 1.9 16 9-24 148-163 (843)
354 KOG3929|consensus 35.1 26 0.00056 25.0 1.5 16 10-25 189-204 (363)
355 PRK11537 putative GTP-binding 33.9 65 0.0014 23.0 3.4 32 15-51 154-186 (318)
356 PF07764 Omega_Repress: Omega 33.7 48 0.001 18.0 2.1 22 51-72 44-65 (71)
357 PF07491 PPI_Ypi1: Protein pho 32.9 26 0.00056 18.9 1.0 9 98-106 32-40 (60)
358 TIGR02475 CobW cobalamin biosy 31.8 1.1E+02 0.0024 22.0 4.4 45 15-63 177-223 (341)
359 TIGR00490 aEF-2 translation el 31.5 31 0.00067 27.5 1.6 16 9-24 136-151 (720)
360 TIGR03790 conserved hypothetic 29.9 2.2E+02 0.0047 20.7 6.1 53 14-72 3-59 (316)
361 COG3596 Predicted GTPase [Gene 29.2 1.1E+02 0.0023 22.0 3.7 63 10-74 147-226 (296)
362 PF15260 FAM219A: Protein fami 29.2 1.5E+02 0.0032 18.4 4.1 41 60-106 76-116 (125)
363 cd01900 YchF YchF subfamily. 29.0 49 0.0011 23.2 2.1 45 11-58 195-241 (274)
364 COG1149 MinD superfamily P-loo 28.7 1.1E+02 0.0023 21.8 3.7 31 9-46 212-242 (284)
365 TIGR00064 ftsY signal recognit 28.3 94 0.002 21.6 3.4 42 14-63 220-261 (272)
366 KOG4271|consensus 26.6 90 0.002 26.1 3.3 31 43-74 3-33 (1100)
367 COG0480 FusA Translation elong 26.3 21 0.00046 28.5 -0.1 17 8-24 125-141 (697)
368 PRK07560 elongation factor EF- 26.2 42 0.00091 26.8 1.5 15 10-24 138-152 (731)
369 PRK14974 cell division protein 25.9 1.4E+02 0.0031 21.6 4.0 42 14-63 282-323 (336)
370 KOG0459|consensus 25.3 1.4E+02 0.003 22.8 3.9 49 13-62 219-278 (501)
371 PF07846 Metallothio_Cad: Meta 25.2 35 0.00076 14.2 0.5 6 101-106 15-20 (21)
372 PF10881 DUF2726: Protein of u 24.4 1.7E+02 0.0036 17.5 5.5 32 34-67 93-124 (126)
373 TIGR03348 VI_IcmF type VI secr 24.1 1.3E+02 0.0029 25.6 4.0 16 9-24 241-256 (1169)
374 COG2452 Predicted site-specifi 23.7 1.8E+02 0.004 19.5 3.9 58 8-71 111-168 (193)
375 PRK00007 elongation factor G; 23.6 66 0.0014 25.6 2.1 29 43-72 254-282 (693)
376 PRK10416 signal recognition pa 23.2 1.7E+02 0.0037 20.9 4.0 41 14-62 262-302 (318)
377 TIGR00484 EF-G translation elo 22.5 70 0.0015 25.4 2.1 27 44-71 254-280 (689)
378 KOG0460|consensus 21.0 1.1E+02 0.0024 22.8 2.7 46 11-57 169-225 (449)
379 PF12651 RHH_3: Ribbon-helix-h 20.8 1.2E+02 0.0025 14.9 2.0 22 51-72 21-42 (44)
380 KOG0447|consensus 20.1 93 0.002 24.8 2.2 31 7-37 475-505 (980)
381 PRK13695 putative NTPase; Prov 20.1 2.4E+02 0.0052 17.7 5.2 49 9-69 124-172 (174)
No 1
>KOG0092|consensus
Probab=99.69 E-value=1.1e-16 Score=104.05 Aligned_cols=90 Identities=27% Similarity=0.368 Sum_probs=73.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhccccCCCCCCCC-CC
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLCNEPINTD-NT 87 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~-~~ 87 (106)
.+++.+.|||||+||.+.+.+..+++..+++.. +..| ||||||++.||+++|..|++.++.... ..... +.
T Consensus 108 ~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~-gll~-~ETSAKTg~Nv~~if~~Ia~~lp~~~~------~~~~~~~~ 179 (200)
T KOG0092|consen 108 SPNIVIALVGNKADLLERREVEFEEAQAYAESQ-GLLF-FETSAKTGENVNEIFQAIAEKLPCSDP------QERQGLPN 179 (200)
T ss_pred CCCeEEEEecchhhhhhcccccHHHHHHHHHhc-CCEE-EEEecccccCHHHHHHHHHHhccCccc------cccccccc
Confidence 378899999999999998999999999999999 9999 999999999999999999999998876 22221 11
Q ss_pred C-CCeeeCCC-CCCCCCCccC
Q psy5780 88 N-SPITLSND-TKSIRNKCNC 106 (106)
Q Consensus 88 ~-~~i~l~~~-~~~~~~~CcC 106 (106)
. .++++... ..+.+++|||
T Consensus 180 ~~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 180 RRQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred cccceecccCCCCcCcCCcCC
Confidence 1 55666643 3344788886
No 2
>KOG0084|consensus
Probab=99.68 E-value=3.2e-16 Score=102.24 Aligned_cols=93 Identities=34% Similarity=0.457 Sum_probs=75.6
Q ss_pred ecCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcc-eEEEcccCCCCCHHHHHHHHHHHHHHhhccccCCCCCCC
Q psy5780 6 GWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIH-YVMETSAKDSTNVEEAFYCLANELKNRQSATLCNEPINT 84 (106)
Q Consensus 6 ~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~ 84 (106)
.+...++|.+|||||+|+.+.+.++.++++.|+..+ +++ | +|||||++.||++.|..|+..+..++. ....
T Consensus 109 ~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~-~~~~f-~ETSAK~~~NVe~~F~~la~~lk~~~~------~~~~ 180 (205)
T KOG0084|consen 109 RYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADEL-GIPIF-LETSAKDSTNVEDAFLTLAKELKQRKG------LHVK 180 (205)
T ss_pred hhccCCCCeEEEeeccccHhheecCHHHHHHHHHhc-CCcce-eecccCCccCHHHHHHHHHHHHHHhcc------cCCC
Confidence 345678999999999999999999999999999999 888 9 999999999999999999999999887 4444
Q ss_pred CC--CCCCeeeCCCCCCC-CCCccC
Q psy5780 85 DN--TNSPITLSNDTKSI-RNKCNC 106 (106)
Q Consensus 85 ~~--~~~~i~l~~~~~~~-~~~CcC 106 (106)
.. +.+++.+...+..+ .++||+
T Consensus 181 ~~~~~~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 181 WSTASLESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred CCcCCCCceeeCCCCcccccCCCCC
Confidence 44 23777777522223 555775
No 3
>KOG0078|consensus
Probab=99.66 E-value=3.9e-16 Score=102.70 Aligned_cols=68 Identities=32% Similarity=0.453 Sum_probs=63.0
Q ss_pred eecCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 5 VGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 5 ~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+....+++|++|||||+|+..++.++.+.++.++.++ ++.| +|||||+|.||++.|..|++.+.++..
T Consensus 111 ~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~-G~~F-~EtSAk~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 111 DEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREY-GIKF-FETSAKTNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred HhhCCCCCcEEEeeccccccccccccHHHHHHHHHHh-CCeE-EEccccCCCCHHHHHHHHHHHHHhhcc
Confidence 3445679999999999999999999999999999999 9999 999999999999999999999997765
No 4
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.59 E-value=8.3e-15 Score=98.40 Aligned_cols=89 Identities=26% Similarity=0.312 Sum_probs=65.7
Q ss_pred CCCCeEEEEEecCCCCC-------------------CCCCCHHHHHHHhhhcCC-------------cceEEEcccCCCC
Q psy5780 9 DSAHDSRVWSNKCDLES-------------------EREVDFNEAEEMGEYVPE-------------IHYVMETSAKDST 56 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~~-------------~~~~~~~Sa~~~~ 56 (106)
.+++|+||||||+||.+ .+.+..+++..+++..+. ..| +|+||++|.
T Consensus 98 ~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~-~E~SA~tg~ 176 (220)
T cd04126 98 NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMC-FETSAKTGY 176 (220)
T ss_pred CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceE-EEeeCCCCC
Confidence 35799999999999975 467888889999887721 579 999999999
Q ss_pred CHHHHHHHHHHHHHHhhccccCCCCCCCCCC--CCCeeeCCCCCCCCCCcc
Q psy5780 57 NVEEAFYCLANELKNRQSATLCNEPINTDNT--NSPITLSNDTKSIRNKCN 105 (106)
Q Consensus 57 ~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~Cc 105 (106)
||+++|..+++.+..... ......+ +..+.+. +.+.++++||
T Consensus 177 ~V~elf~~i~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~ 220 (220)
T cd04126 177 NVDELFEYLFNLVLPLIL------AQRAEANRTQGTVNLP-NPKRSKSKCC 220 (220)
T ss_pred CHHHHHHHHHHHHHHHHH------hhhhhhhhhhccccCC-CcccCCCCCC
Confidence 999999999998887765 2222111 2556665 3333466665
No 5
>KOG0091|consensus
Probab=99.59 E-value=9.1e-15 Score=93.44 Aligned_cols=89 Identities=29% Similarity=0.375 Sum_probs=72.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhccccCCCCCCCCCCC-
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLCNEPINTDNTN- 88 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~- 88 (106)
.++.+.|||.|+||...++++.++++.+++.+ ++.| +||||++|.||++.|..+++.+..... +++.....
T Consensus 115 ~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~h-gM~F-VETSak~g~NVeEAF~mlaqeIf~~i~------qGeik~edg 186 (213)
T KOG0091|consen 115 DKVVFLLVGHKSDLQSQRQVTAEEAEKLAASH-GMAF-VETSAKNGCNVEEAFDMLAQEIFQAIQ------QGEIKLEDG 186 (213)
T ss_pred CeeEEEEeccccchhhhccccHHHHHHHHHhc-CceE-EEecccCCCcHHHHHHHHHHHHHHHHh------cCceeeeec
Confidence 46778999999999999999999999999999 9999 999999999999999999999999887 65544433
Q ss_pred -CCeeeCCCCC--------CCCCCccC
Q psy5780 89 -SPITLSNDTK--------SIRNKCNC 106 (106)
Q Consensus 89 -~~i~l~~~~~--------~~~~~CcC 106 (106)
.+++...+.. ..++.|||
T Consensus 187 w~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 187 WGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred cccccccCCCcCCCcccccCCCCCCCC
Confidence 5555432111 11778888
No 6
>KOG0394|consensus
Probab=99.55 E-value=2.7e-14 Score=92.63 Aligned_cols=90 Identities=28% Similarity=0.383 Sum_probs=69.6
Q ss_pred CCCeEEEEEecCCCCC--CCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhccccCCCCCC--CC
Q psy5780 10 SAHDSRVWSNKCDLES--EREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLCNEPIN--TD 85 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~--~~ 85 (106)
...|+||+|||+|+.. .+.++...++.|+...+.++| ||||||...||++.|..+++.++.... ... ..
T Consensus 117 e~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipy-fEtSAK~~~NV~~AFe~ia~~aL~~E~------~~~~~~~ 189 (210)
T KOG0394|consen 117 ETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPY-FETSAKEATNVDEAFEEIARRALANED------REIAELA 189 (210)
T ss_pred CcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCcee-EEecccccccHHHHHHHHHHHHHhccc------hhhhhhh
Confidence 4689999999999965 378899999999998878999 999999999999999999999998876 211 11
Q ss_pred CCCCCeeeCCCCCCCCCCccC
Q psy5780 86 NTNSPITLSNDTKSIRNKCNC 106 (106)
Q Consensus 86 ~~~~~i~l~~~~~~~~~~CcC 106 (106)
.-...+.+..+..+.+++|.|
T Consensus 190 ~~~d~i~~~~~~~~~~~~c~c 210 (210)
T KOG0394|consen 190 DYSDQIVLSTKANNQSSGCEC 210 (210)
T ss_pred hcCcccccccccccCCCCCCC
Confidence 122566666444444556666
No 7
>PTZ00099 rab6; Provisional
Probab=99.52 E-value=1.3e-13 Score=89.67 Aligned_cols=63 Identities=27% Similarity=0.297 Sum_probs=55.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|++|||||+||.+.+.+..+++..++..+ +..| +++||++|.||+++|.+|++.+++...
T Consensus 84 ~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~-~~~~-~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 84 KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEY-NTMF-HETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEE-EEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 57899999999999766667777788888888 7789 999999999999999999999988655
No 8
>KOG0094|consensus
Probab=99.52 E-value=5.1e-14 Score=92.09 Aligned_cols=62 Identities=29% Similarity=0.361 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
++-++|||||.||.+++++..+++...++++ +..| +++||+.|.||.++|..++..+++...
T Consensus 128 ~viI~LVGnKtDL~dkrqvs~eEg~~kAkel-~a~f-~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 128 DVIIFLVGNKTDLSDKRQVSIEEGERKAKEL-NAEF-IETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred ceEEEEEcccccccchhhhhHHHHHHHHHHh-CcEE-EEecccCCCCHHHHHHHHHHhccCccc
Confidence 5889999999999999999999999999999 8899 999999999999999999999998865
No 9
>KOG0087|consensus
Probab=99.51 E-value=7.3e-14 Score=92.16 Aligned_cols=66 Identities=33% Similarity=0.358 Sum_probs=60.8
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..+++++++|||||+||...+.++.+++..+++.. +..| ++|||+++.||+..|..+...|.+...
T Consensus 115 had~nivimLvGNK~DL~~lraV~te~~k~~Ae~~-~l~f-~EtSAl~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 115 HADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE-GLFF-LETSALDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred cCCCCeEEEEeecchhhhhccccchhhhHhHHHhc-CceE-EEecccccccHHHHHHHHHHHHHHHHH
Confidence 46689999999999999998999999999999999 9999 999999999999999999988887754
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.49 E-value=2.3e-13 Score=89.47 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=57.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+||||||.||...+.++.+++..+++.+ ++.| +++||++|.||+++|.++++.+.....
T Consensus 109 ~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~-~~~~-~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 109 PGVPKILVGNRLHLAFKRQVATEQAQAYAERN-GMTF-FEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred CCCCEEEEEECccchhccCCCHHHHHHHHHHc-CCEE-EEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 68999999999999877778888999999988 8899 999999999999999999998876655
No 11
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.49 E-value=2.5e-13 Score=89.52 Aligned_cols=64 Identities=27% Similarity=0.373 Sum_probs=55.8
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCC-cceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPE-IHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|++|||||+|+.+.+.+..+++..+++.+ + ..+ +++||+++.||+++|.+|++.+.+...
T Consensus 108 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~-~e~Sak~~~~v~e~f~~l~~~l~~~~~ 172 (201)
T cd04107 108 GEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN-GFIGW-FETSAKEGINIEEAMRFLVKNILANDK 172 (201)
T ss_pred CCCCcEEEEEECCCcccccccCHHHHHHHHHHc-CCceE-EEEeCCCCCCHHHHHHHHHHHHHHhch
Confidence 367999999999999765667788888888888 6 689 999999999999999999999887754
No 12
>KOG0093|consensus
Probab=99.49 E-value=4.7e-14 Score=88.84 Aligned_cols=66 Identities=26% Similarity=0.470 Sum_probs=61.8
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+.-.++|+|||||||||.+++.++.+.++.++.+. |..| ||+|||.+.||.++|+.++..|-+++.
T Consensus 122 ysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~L-Gfef-FEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 122 YSWDNAQVILVGNKCDMDSERVISHERGRQLADQL-GFEF-FETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred eeccCceEEEEecccCCccceeeeHHHHHHHHHHh-ChHH-hhhcccccccHHHHHHHHHHHHHHHhh
Confidence 34478999999999999999999999999999999 9999 999999999999999999999988877
No 13
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.49 E-value=2.8e-13 Score=88.60 Aligned_cols=63 Identities=33% Similarity=0.514 Sum_probs=54.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++||||+|+...+.+....+..++..+ +..+ +++||++|.||+++|.++++.+.++..
T Consensus 105 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~e~SAk~~~~v~~l~~~l~~~l~~~~~ 167 (190)
T cd04144 105 ADVPIMIVGNKCDKVYEREVSTEEGAALARRL-GCEF-IEASAKTNVNVERAFYTLVRALRQQRQ 167 (190)
T ss_pred CCCCEEEEEEChhccccCccCHHHHHHHHHHh-CCEE-EEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 57899999999999766677777777788888 7889 999999999999999999998876655
No 14
>KOG0079|consensus
Probab=99.48 E-value=8.6e-14 Score=87.77 Aligned_cols=88 Identities=26% Similarity=0.389 Sum_probs=70.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhccccCCCCCCCCC-C
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLCNEPINTDN-T 87 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~-~ 87 (106)
.+.+|-+|||||.|+++.+.+..++++.|+... ++.+ ||||||+..|++..|..|.+.+...+. ...... .
T Consensus 110 cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~m-gie~-FETSaKe~~NvE~mF~cit~qvl~~k~------r~~~~~~r 181 (198)
T KOG0079|consen 110 CDSVPKVLVGNKNDDPERRVVDTEDARAFALQM-GIEL-FETSAKENENVEAMFHCITKQVLQAKL------RESVEQQR 181 (198)
T ss_pred CccccceecccCCCCccceeeehHHHHHHHHhc-Cchh-eehhhhhcccchHHHHHHHHHHHHHHH------hhcHHHHh
Confidence 367999999999999999999999999999999 9999 999999999999999999999998874 222222 2
Q ss_pred CCCeeeCCCCCCCCCCcc
Q psy5780 88 NSPITLSNDTKSIRNKCN 105 (106)
Q Consensus 88 ~~~i~l~~~~~~~~~~Cc 105 (106)
...+.|..+..+ ++.||
T Consensus 182 ~~~~~l~~n~~~-~~k~c 198 (198)
T KOG0079|consen 182 ADAVSLKDNSKS-TKKCC 198 (198)
T ss_pred hcceEeccCCCc-cccCC
Confidence 277777744322 44564
No 15
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.45 E-value=1.1e-12 Score=85.92 Aligned_cols=63 Identities=37% Similarity=0.453 Sum_probs=55.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+...+.+..+++..+...+ +.++ +++||++|.|++++|.+|++.+.+...
T Consensus 105 ~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~-~~~~-~e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 105 EDVVIMLLGNKADMSGERVVKREDGERLAKEY-GVPF-METSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred CCCcEEEEEEcccchhccccCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 47899999999999766666777778888888 7899 999999999999999999999987754
No 16
>KOG0088|consensus
Probab=99.44 E-value=3.6e-13 Score=85.86 Aligned_cols=64 Identities=39% Similarity=0.475 Sum_probs=58.8
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+-.+.+++||||+||++.+.++.+++..+++.. +..| ++|||+.+.||.++|..|...+.++.+
T Consensus 116 Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesv-GA~y-~eTSAk~N~Gi~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 116 GNEIELLIVGNKIDLEEERQVTRQEAEAYAESV-GALY-METSAKDNVGISELFESLTAKMIEHSS 179 (218)
T ss_pred CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhh-chhh-eecccccccCHHHHHHHHHHHHHHHhh
Confidence 356889999999999999999999999999999 9999 999999999999999999998888753
No 17
>PLN03110 Rab GTPase; Provisional
Probab=99.44 E-value=1.9e-12 Score=86.52 Aligned_cols=64 Identities=33% Similarity=0.359 Sum_probs=55.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+||...+.+..+.+..+...+ ++++ +++||+++.|++++|..+++.+.+...
T Consensus 115 ~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~-~~~~-~e~SA~~g~~v~~lf~~l~~~i~~~~~ 178 (216)
T PLN03110 115 DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE-GLSF-LETSALEATNVEKAFQTILLEIYHIIS 178 (216)
T ss_pred CCCCeEEEEEEChhcccccCCCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 357999999999999777777777788888878 8899 999999999999999999998877543
No 18
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.44 E-value=1.3e-12 Score=86.07 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=55.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..+|+++||||+|+.+...+..+.+..+.... +..+ |++||+++.||+++|.+|++.+.....
T Consensus 109 ~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~e~Sa~~~~gi~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 109 DDVCKVLVGNKNDDPERKVVETEDAYKFAGQM-GISL-FETSAKENINVEEMFNCITELVLRAKK 171 (199)
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHc-CCEE-EEEECCCCcCHHHHHHHHHHHHHHhhh
Confidence 56899999999999876666777778888888 7889 999999999999999999999987765
No 19
>KOG0097|consensus
Probab=99.43 E-value=1.3e-12 Score=82.08 Aligned_cols=66 Identities=33% Similarity=0.456 Sum_probs=61.8
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+..|+..++++|||.||+..+.++.+++..|+++. +..| ++.||++|.||++.|-+.++.+.+..+
T Consensus 112 ltnpnt~i~lignkadle~qrdv~yeeak~faeen-gl~f-le~saktg~nvedafle~akkiyqniq 177 (215)
T KOG0097|consen 112 LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEEN-GLMF-LEASAKTGQNVEDAFLETAKKIYQNIQ 177 (215)
T ss_pred cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhc-CeEE-EEecccccCcHHHHHHHHHHHHHHhhh
Confidence 46688999999999999999999999999999999 9999 999999999999999999999998865
No 20
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.43 E-value=2.3e-12 Score=85.84 Aligned_cols=63 Identities=40% Similarity=0.545 Sum_probs=55.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..+|++||+||.|+.+...+..+++..+++.+ +..+ +++||+++.||+++|..|++.+.++..
T Consensus 108 ~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~e~Sak~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 108 HRPVFILVGHKCDLESQRQVTREEAEKLAKDL-GMKY-IETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHHHh-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 45788999999999876677888888888888 7899 999999999999999999999887755
No 21
>KOG0098|consensus
Probab=99.41 E-value=4.1e-13 Score=87.37 Aligned_cols=65 Identities=37% Similarity=0.433 Sum_probs=61.2
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..+++.++|+|||+||...+.++.++++.|++++ +..| ++|||+++.||++.|...+..|..+.+
T Consensus 108 ~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~eh-gLif-mETSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 108 SNENMVIMLIGNKSDLEARREVSKEEGEAFAREH-GLIF-METSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred cCCCcEEEEEcchhhhhccccccHHHHHHHHHHc-Ccee-ehhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999 9999 999999999999999999999988865
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=3.3e-12 Score=86.49 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=54.7
Q ss_pred CCCeEEEEEecCCCCC------------CCCCCHHHHHHHhhhcCCc-ceEEEcccCCCC-CHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLES------------EREVDFNEAEEMGEYVPEI-HYVMETSAKDST-NVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~-~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+||||||+||.+ .+.+..+++..+++.+ +. .| |||||++|. ||+++|..+++.+.+...
T Consensus 116 ~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~-~~~~~-~EtSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 116 PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL-GAEVY-LECSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc-CCCEE-EEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 5789999999999964 2568888999999999 77 69 999999998 899999999998887643
No 23
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.41 E-value=2.5e-12 Score=85.41 Aligned_cols=65 Identities=26% Similarity=0.448 Sum_probs=55.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++||||+||.+.+.+...++..+++.+.++.| ++|||++|.||+++|.++++.+.+...
T Consensus 103 ~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~-~etSAktg~gV~e~F~~l~~~~~~~~~ 167 (202)
T cd04120 103 SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRF-CEASAKDNFNVDEIFLKLVDDILKKMP 167 (202)
T ss_pred CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEE-EEecCCCCCCHHHHHHHHHHHHHHhCc
Confidence 36799999999999987777888888888876436789 999999999999999999998877644
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.40 E-value=1.7e-12 Score=83.84 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=56.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++||||+|+.+.+.+..+++..+++.+ +++| +++||++|.||+++|.++++.+.+...
T Consensus 106 ~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-~~~~-~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 168 (172)
T cd04141 106 EDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-NCPF-FETSAALRHYIDDAFHGLVREIRRKES 168 (172)
T ss_pred CCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-CCEE-EEEecCCCCCHHHHHHHHHHHHHHhcc
Confidence 57999999999999877778888888888888 8899 999999999999999999998887654
No 25
>KOG0086|consensus
Probab=99.39 E-value=1.5e-12 Score=82.69 Aligned_cols=79 Identities=34% Similarity=0.370 Sum_probs=69.7
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLCNEPINTDN 86 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~ 86 (106)
+..+++.+||+|||.||.+.++++..++..|+++. .+.+ .|+||++|+||++.|-..++.|..+.. .++.++
T Consensus 110 lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEn-el~f-lETSa~TGeNVEEaFl~c~~tIl~kIE------~GElDP 181 (214)
T KOG0086|consen 110 LASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN-ELMF-LETSALTGENVEEAFLKCARTILNKIE------SGELDP 181 (214)
T ss_pred hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhccc-ceee-eeecccccccHHHHHHHHHHHHHHHHh------hcCCCH
Confidence 46689999999999999999999999999999988 8889 999999999999999999999999988 777766
Q ss_pred CC--CCeee
Q psy5780 87 TN--SPITL 93 (106)
Q Consensus 87 ~~--~~i~l 93 (106)
.. .+|..
T Consensus 182 er~gsGIQY 190 (214)
T KOG0086|consen 182 ERMGSGIQY 190 (214)
T ss_pred HHccccccc
Confidence 55 44543
No 26
>KOG0080|consensus
Probab=99.39 E-value=6.7e-13 Score=84.74 Aligned_cols=65 Identities=29% Similarity=0.282 Sum_probs=60.4
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..+++..++||||+|-.+.+.++.+++..|++.+ +..| +|+||++.+||+..|++++.+|.+...
T Consensus 114 tn~diikmlVgNKiDkes~R~V~reEG~kfAr~h-~~LF-iE~SAkt~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 114 TNPDIIKMLVGNKIDKESERVVDREEGLKFARKH-RCLF-IECSAKTRENVQCCFEELVEKIIETPS 178 (209)
T ss_pred CCccHhHhhhcccccchhcccccHHHHHHHHHhh-CcEE-EEcchhhhccHHHHHHHHHHHHhcCcc
Confidence 4478899999999998878899999999999999 9999 999999999999999999999998866
No 27
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.38 E-value=1.5e-12 Score=85.93 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=50.8
Q ss_pred CCCeEEEEEecCCCCC-------------------CCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLES-------------------EREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+++|++|||||+||.+ .+.++.+++..+++.+ ++.| +|+||++|.||+++|..+++.
T Consensus 119 ~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~-~~~~-~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 119 PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKEL-GIPY-YETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHh-CCEE-EEcCCCCCCCHHHHHHHHHHh
Confidence 5789999999999964 3568888999999999 8899 999999999999999999864
No 28
>KOG0083|consensus
Probab=99.36 E-value=3.3e-13 Score=83.97 Aligned_cols=65 Identities=40% Similarity=0.538 Sum_probs=59.5
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
....+.++++|||+|+..++.+..+++..+++.+ +++| +|+||++|.||+-.|..|++++.+..-
T Consensus 100 ~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y-~ipf-metsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 100 AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY-GIPF-METSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred HHhhHhHhhhccccccchhhccccchHHHHHHHH-CCCc-eeccccccccHhHHHHHHHHHHHHhcc
Confidence 4467889999999999888889999999999999 9999 999999999999999999999988765
No 29
>PLN03118 Rab family protein; Provisional
Probab=99.35 E-value=1.1e-11 Score=82.26 Aligned_cols=63 Identities=32% Similarity=0.316 Sum_probs=54.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+...+.+..+....+...+ +..| +++||+++.|++++|..|++.+.....
T Consensus 119 ~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~-~~~~-~e~SAk~~~~v~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 119 QDCVKMLVGNKVDRESERDVSREEGMALAKEH-GCLF-LECSAKTRENVEQCFEELALKIMEVPS 181 (211)
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 46899999999999866666777777777777 7889 999999999999999999999987643
No 30
>KOG0081|consensus
Probab=99.35 E-value=2.8e-12 Score=81.88 Aligned_cols=66 Identities=32% Similarity=0.374 Sum_probs=59.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhcccc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~ 77 (106)
.+-.++++|||+||++.+.+...++..++.++ +++| |||||-+|.||++..+.+...+++++...+
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky-glPY-fETSA~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKY-GLPY-FETSACTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHh-CCCe-eeeccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999 9999 999999999999999999999998877433
No 31
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=1.5e-11 Score=80.11 Aligned_cols=64 Identities=36% Similarity=0.406 Sum_probs=55.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+..+.+..++... ++++ +++||+++.|++++|.++++.+.++..
T Consensus 103 ~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~evSa~~~~~i~~~f~~l~~~~~~~~~ 166 (188)
T cd04125 103 RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSL-NIPF-FETSAKQSINVEEAFILLVKLIIKRLE 166 (188)
T ss_pred CCCCeEEEEEECCCCcccccCCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 346899999999999876667777777888777 7889 999999999999999999999987765
No 32
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.34 E-value=3.7e-12 Score=82.84 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCCCCCC----------CCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER----------EVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++|++|||||+||.+.+ .+..+++..+++.+ +. .| +|+||+++.||+++|..+++.+.
T Consensus 104 ~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~-~~~~~-~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 104 PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQI-GAAAY-IECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHc-CCCEE-EECCCCcccCHHHHHHHHHHHHh
Confidence 579999999999996542 47788899999988 76 69 99999999999999999998763
No 33
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.34 E-value=1.7e-11 Score=80.01 Aligned_cols=63 Identities=27% Similarity=0.457 Sum_probs=51.4
Q ss_pred CCCeEEEEEecCCCCCC----CCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESE----REVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++|+||+|+.+. ..+....+..++..+ +..+ +++||+++.||+++|..+++.+.+...
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 170 (193)
T cd04118 104 EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-KAQH-FETSSKTGQNVDELFQKVAEDFVSRAN 170 (193)
T ss_pred CCCCEEEEEEcccccccccccCccCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 47999999999998532 234555667777777 7889 999999999999999999999976644
No 34
>KOG0395|consensus
Probab=99.32 E-value=8.3e-12 Score=82.61 Aligned_cols=65 Identities=34% Similarity=0.450 Sum_probs=58.7
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
....+|+++||||+||...+.++.+++..++..+ +..| +|+||+.+.+|+++|..|++.+.....
T Consensus 105 ~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~-~~~f-~E~Sak~~~~v~~~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 105 GRDDVPIILVGNKCDLERERQVSEEEGKALARSW-GCAF-IETSAKLNYNVDEVFYELVREIRLPRE 169 (196)
T ss_pred CcCCCCEEEEEEcccchhccccCHHHHHHHHHhc-CCcE-EEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence 3356899999999999988899999999999999 8899 999999999999999999999887433
No 35
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.32 E-value=1.3e-11 Score=80.15 Aligned_cols=63 Identities=29% Similarity=0.324 Sum_probs=53.7
Q ss_pred CCCeEEEEEecCCCCCC----CCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESE----REVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++||||.|+... +.+...++..++..+ +. .+ +++||++|.||+++|..+++.+.....
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 104 PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ-GAFAY-LECSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHc-CCcEE-EEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 57999999999999643 245667778888888 66 89 999999999999999999999988766
No 36
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.32 E-value=6.3e-12 Score=82.11 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCCCC------------CCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCC-HHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLES------------EREVDFNEAEEMGEYVPEI-HYVMETSAKDSTN-VEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~-v~~lf~~l~~~i~ 70 (106)
+++|++|||||+||.+ .+.+..+++..+++.+ +. .| +|+||+++.| |+++|..+++...
T Consensus 108 ~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~-~~~~~-~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 108 PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQI-GAATY-IECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHc-CCCEE-EECCcCCCCCCHHHHHHHHHHHHh
Confidence 5799999999999964 2458888999999999 74 89 9999999998 9999999988543
No 37
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.31 E-value=1.3e-11 Score=78.73 Aligned_cols=61 Identities=31% Similarity=0.473 Sum_probs=53.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++.|+++||||+|+.+.+.+..+++..+++.. +..+ +++||++|.||+++|..+++.+.+
T Consensus 105 ~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 105 NPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN-GLLF-LECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCCeEEEEEECcccccccCcCHHHHHHHHHHc-CCEE-EEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999877777778888888888 8899 999999999999999999988754
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.29 E-value=1.6e-11 Score=79.17 Aligned_cols=61 Identities=36% Similarity=0.442 Sum_probs=54.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
++.|+++|+||+|+.+.+.+..+++..+++.+ +.++ +++||+++.|++++|..|++.+.++
T Consensus 119 ~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 119 ENPDIVLCGNKADLEDQRQVSEEQAKALADKY-GIPY-FETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCcEEEEEeCccchhcCccCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 57899999999999876677777888899888 8899 9999999999999999999887654
No 39
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.29 E-value=1.4e-11 Score=80.82 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=50.6
Q ss_pred CCCeEEEEEecCCCCCCC------------CCCHHHHHHHhhhcCC-cceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER------------EVDFNEAEEMGEYVPE-IHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
+++|++|||||.||.+.. .+..+++..+++.+ + ..| +++||++|.||+++|..+++.+..
T Consensus 106 ~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~-~~~~~-~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 106 PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI-HAVKY-LECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc-CCcEE-EEeCCCCCCCHHHHHHHHHHHHhc
Confidence 579999999999996532 35667788888888 6 689 999999999999999999987753
No 40
>PLN03108 Rab family protein; Provisional
Probab=99.29 E-value=5.2e-11 Score=79.21 Aligned_cols=64 Identities=33% Similarity=0.461 Sum_probs=56.7
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+++|+++|+||+|+...+.+..+++..+++.+ +..+ +++||+++.||+++|.++++.+.++..
T Consensus 109 ~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 109 NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIF-MEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CCCCcEEEEEECccCccccCCCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 357999999999999877777888888899888 8899 999999999999999999999887654
No 41
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=1.2e-11 Score=80.50 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=50.7
Q ss_pred CCCeEEEEEecCCCCC------------CCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCC-HHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLES------------EREVDFNEAEEMGEYVPEI-HYVMETSAKDSTN-VEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~-v~~lf~~l~~~i~ 70 (106)
+++|++|||||+||.+ .+.+..+++..+++.+ +. .| +|+||++|+| |+++|..+++...
T Consensus 104 ~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~-~~~~~-~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 104 PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL-GAEIY-LECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh-CCCEE-EECccCcCCcCHHHHHHHHHHHHh
Confidence 6899999999999964 2357888999999999 75 79 9999999995 9999999988544
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=99.29 E-value=1.7e-11 Score=80.04 Aligned_cols=64 Identities=39% Similarity=0.590 Sum_probs=55.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+...++..+.+.+ +.++ +++||+++.||+++|.++++.+.+...
T Consensus 108 ~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~-~~~~-~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 108 KDRVPMILVGNKCDLDSERQVSTGEGQELAKSF-GIPF-LETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred CCCCCEEEEEECcccccccccCHHHHHHHHHHh-CCEE-EEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 358999999999999766666777777787777 7889 999999999999999999998887754
No 43
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.25 E-value=3.3e-11 Score=78.81 Aligned_cols=63 Identities=27% Similarity=0.371 Sum_probs=50.2
Q ss_pred CCCeEEEEEecCCCCCCC------------CCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESER------------EVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
+++|+++||||+||.+.. .+..+++..++...+...| +++||++|.||+++|.++++.+....
T Consensus 103 ~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 103 PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY-LECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE-EEccCCcCCCHHHHHHHHHHHHhccc
Confidence 579999999999997543 2445566777777624689 99999999999999999998886443
No 44
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.25 E-value=2.6e-11 Score=77.25 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=51.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++||||.|+...+.+..+++..+++.+ +.+| +++||+++.||+++|.+|++.
T Consensus 104 ~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 104 EGVQKILIGNKADEEQKRQVGDEQGNKLAKEY-GMDF-FETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHhh
Confidence 47999999999999877777888888888888 7899 999999999999999999865
No 45
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.24 E-value=2.8e-11 Score=76.88 Aligned_cols=60 Identities=33% Similarity=0.482 Sum_probs=51.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
..++|+++|+||+|+.....+....+..+++.+ +.++ +++||+++.|++++|.++++.+.
T Consensus 104 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 104 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-GCAF-LETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCCCCEEEEEECCcchhccEEcHHHHHHHHHHh-CCEE-EEeeCCCCCCHHHHHHHHHHHhh
Confidence 367999999999999766666666677777778 7899 99999999999999999987663
No 46
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.23 E-value=2.3e-11 Score=77.65 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=48.5
Q ss_pred CCCeEEEEEecCCCC--CCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLE--SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+++|+++||||.||. ..+.+..+++..+++....+.| ++|||+++.||+++|..+++.
T Consensus 98 ~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~-~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 98 SEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSY-YETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcE-EEEecCCCCCHHHHHHHHHhh
Confidence 578999999999985 3456777777788876525789 999999999999999999865
No 47
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.23 E-value=6e-11 Score=75.78 Aligned_cols=61 Identities=39% Similarity=0.627 Sum_probs=53.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
..++|+++||||+|+.+.+.+..+++..+++.+ +.++ +++||+++.||+++|.++++.+..
T Consensus 106 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 106 SEDVERMLVGNKCDMEEKRVVSKEEGEALADEY-GIKF-LETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999876667777788888888 7899 999999999999999999998864
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.23 E-value=5.7e-11 Score=75.76 Aligned_cols=60 Identities=27% Similarity=0.470 Sum_probs=51.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+.+.+..+....+.+.. ++++ +++||+++.|++++|.++++.+..
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 105 DNAQVILVGNKCDMEDERVVSSERGRQLADQL-GFEF-FEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHHHc-CCEE-EEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999876666677777788877 7889 999999999999999999987754
No 49
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.22 E-value=4.3e-11 Score=76.31 Aligned_cols=56 Identities=38% Similarity=0.413 Sum_probs=48.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
+++|+++|+||+|+.+.+.+....+..++..+ +..+ +++||++|.||+++|.+|++
T Consensus 107 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 107 EKIPIMLVGNKCDESHKREVSSNEGAACATEW-NCAF-METSAKTNHNVQELFQELLN 162 (165)
T ss_pred CCCCEEEEEECccccccCeecHHHHHHHHHHh-CCcE-EEeecCCCCCHHHHHHHHHh
Confidence 67999999999999765666666777777777 7889 99999999999999999875
No 50
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.22 E-value=7.4e-11 Score=78.64 Aligned_cols=61 Identities=26% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+||.+.+.+..+.+..+++.+ +..+ +++||++|.||+++|.++++.+...
T Consensus 108 ~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~-~~~~-~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 108 TQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN-GMES-CLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CCceEEEEEECcccccccccCHHHHHHHHHHc-CCEE-EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999876777878888888888 7889 9999999999999999999988765
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.21 E-value=5.4e-11 Score=77.01 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=48.8
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+++|++|||||+|+.+. +.+..+++..+++..+...| +++||++|.||+++|+.+++..
T Consensus 104 ~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~-~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 104 PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEE-EEecCCCCCCHHHHHHHHHHHh
Confidence 57999999999998643 45677778888877723689 9999999999999999998743
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.21 E-value=5.5e-11 Score=75.17 Aligned_cols=58 Identities=34% Similarity=0.448 Sum_probs=49.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+.+.+.+..+.+..+.+.+ +.++ +++||+++.|++++|.++++.+
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 105 ENVPMVLVGNKCDLEDERVVSREEGQALARQW-GCPF-YETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCEEEEEECccccccceecHHHHHHHHHHc-CCeE-EEecCCCCCCHHHHHHHHHHhc
Confidence 57999999999999766666666677777888 6889 9999999999999999998754
No 53
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.21 E-value=8.2e-11 Score=74.60 Aligned_cols=59 Identities=42% Similarity=0.599 Sum_probs=51.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|+++|+||+|+.+.+.+..+....+.+.+ +.++ +++||+++.|++++|.+|++.+.
T Consensus 104 ~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 104 DDVPIVLVGNKCDLESERVVSTEEGKELARQW-GCPF-LETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCCEEEEEECccccccceEcHHHHHHHHHHc-CCEE-EEeecCCCCCHHHHHHHHHHHHh
Confidence 47899999999999766666667777788888 7899 99999999999999999998764
No 54
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.20 E-value=8e-11 Score=77.83 Aligned_cols=64 Identities=20% Similarity=0.074 Sum_probs=52.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhh-hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGE-YVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+...+.+..+.+..++. .+ +.+| |++||++|.||+++|..+++.+.....
T Consensus 114 ~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~-~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 114 NKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSW-KCGY-LECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCCEEEEEECccccccccccHHHHHHHHHHhc-CCcE-EEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 4679999999999997666666666666644 45 7899 999999999999999999988876654
No 55
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.20 E-value=8.6e-11 Score=74.33 Aligned_cols=59 Identities=37% Similarity=0.502 Sum_probs=50.4
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
..++|+++|+||+|+...+.+..+.+..+.+.. +.++ +++||++|.||+++|..+++.+
T Consensus 105 ~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 105 RDEFPMILVGNKADLEHQRKVSREEGQELARKL-KIPY-IETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCEEEEeeCccccccceecHHHHHHHHHHc-CCcE-EEeeCCCCCCHHHHHHHHHHhh
Confidence 357899999999999766666666777788877 7899 9999999999999999998764
No 56
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.19 E-value=1.1e-10 Score=73.80 Aligned_cols=59 Identities=37% Similarity=0.478 Sum_probs=54.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|++|||||.|+.+.+.++.+++..++..+ +..| +++||+++.||.++|..+++.+.
T Consensus 103 ~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~-~~~~-~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 103 EDIPIIVVGNKSDLSDEREVSVEEAQEFAKEL-GVPY-FEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHT-TSEE-EEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ccccceeeeccccccccccchhhHHHHHHHHh-CCEE-EEEECCCCCCHHHHHHHHHHHHh
Confidence 47999999999999877788999999999999 7999 99999999999999999998875
No 57
>KOG0095|consensus
Probab=99.19 E-value=7.7e-12 Score=79.20 Aligned_cols=65 Identities=34% Similarity=0.417 Sum_probs=57.3
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
+...++-.||||||+|+.+.+.++...+++|.+.. ...| +|+||++..||+.+|..++-.+....
T Consensus 108 yan~kvlkilvgnk~d~~drrevp~qigeefs~~q-dmyf-letsakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 108 YANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ-DMYF-LETSAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred HhhcceEEEeeccccchhhhhhhhHHHHHHHHHhh-hhhh-hhhcccchhhHHHHHHHHHHHHHHHH
Confidence 45567889999999999988899999999999988 8889 99999999999999999987666554
No 58
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.19 E-value=2.5e-10 Score=76.86 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCC-cceEEEcccCCCCC-HHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPE-IHYVMETSAKDSTN-VEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~-v~~lf~~l~~~i~~~~~ 74 (106)
+++|++|||||+||.+. ..+..+++..+++.. + ..| +|+||+++.+ |+++|..+++....+..
T Consensus 104 ~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~-~~~~y-~E~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 104 PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQV-GAVSY-VECSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHc-CCCEE-EEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 68999999999999642 136778889999998 6 589 9999999985 99999999987776544
No 59
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.19 E-value=6.3e-11 Score=76.63 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=48.6
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+++|++|||||+||.+. +.+..+++..+++.++...| +++||++|.|++++|..+++.
T Consensus 104 ~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 104 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY-LECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE-EEecccccCCHHHHHHHHHHh
Confidence 57999999999999642 24677888888888823589 999999999999999999864
No 60
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.18 E-value=7.6e-11 Score=75.03 Aligned_cols=60 Identities=27% Similarity=0.335 Sum_probs=51.8
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCC-CHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDST-NVEEAFYCLANELK 70 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~lf~~l~~~i~ 70 (106)
..++|+++|+||+|+...+.+..+++..+++.. +..| +++||+++. ||+++|..+++.+.
T Consensus 104 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 104 DREIPVILVGNKADLLHYRQVSTEEGEKLASEL-GCLF-FEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCCCCEEEEEECCchHHhCccCHHHHHHHHHHc-CCEE-EEeCCCCCchhHHHHHHHHHHHHh
Confidence 357999999999999766677777788888888 7899 999999994 99999999998764
No 61
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.18 E-value=1.3e-10 Score=73.97 Aligned_cols=60 Identities=43% Similarity=0.696 Sum_probs=52.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
+++|+++|+||.|+.....+..+.+..+++.+ +.++ +++||++|.||+++|..+++.+.+
T Consensus 106 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 106 ENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL-GIPF-LETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred CCCcEEEEEEChhcccccCCCHHHHHHHHHHc-CCeE-EEEECCCCcCHHHHHHHHHHHHHh
Confidence 57899999999999776677777788888888 8899 999999999999999999987753
No 62
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.18 E-value=1.3e-10 Score=73.53 Aligned_cols=59 Identities=31% Similarity=0.302 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.+.|+++|+||+|+.+.+.+..+.+..+.... +..+ +++||+++.|++++|..|++.+.
T Consensus 109 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAVSEDEGRLWAESK-GFKY-FETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCceEEEEEEchhcccccccCHHHHHHHHHHc-CCeE-EEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999755566777777788888 7889 99999999999999999998765
No 63
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.17 E-value=7.8e-11 Score=75.43 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=49.7
Q ss_pred CCCeEEEEEecCCCCCCC------------CCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER------------EVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++|+++||||+|+.... .+..+++..+++.+ +. .+ +++||+++.||+++|..+++.+.
T Consensus 101 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 101 PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI-GAVKY-LECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc-CCcEE-EEecCCCCCCHHHHHHHHHHHhc
Confidence 589999999999996532 26667778888888 54 89 99999999999999999998764
No 64
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.17 E-value=1.6e-10 Score=75.31 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=51.0
Q ss_pred CCCeEEEEEecCCCCC----------CCCCCHHHHHHHhhhcCC-cceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLES----------EREVDFNEAEEMGEYVPE-IHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++||||+|+.+ .+.+..+.+..+++.+ + ..+ |++||++|.||+++|+.+++.+.....
T Consensus 104 ~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 104 PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI-GAKKY-MECSALTGEGVDDVFEAATRAALLVRK 177 (187)
T ss_pred CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh-CCcEE-EEccCCCCCCHHHHHHHHHHHHhcccC
Confidence 5799999999999854 2334556677778877 5 489 999999999999999999988766544
No 65
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.16 E-value=1.8e-10 Score=77.31 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=54.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+|+|+||+|+.+.+.+..+++..++..+ +..+ +++||+++.||+++|..+++.+.....
T Consensus 105 ~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~-~~~~-~e~SA~~~~gv~~l~~~l~~~~~~~~~ 167 (221)
T cd04148 105 EDRPIILVGNKSDLARSREVSVQEGRACAVVF-DCKF-IETSAGLQHNVDELLEGIVRQIRLRRD 167 (221)
T ss_pred CCCCEEEEEEChhccccceecHHHHHHHHHHc-CCeE-EEecCCCCCCHHHHHHHHHHHHHhhhc
Confidence 57999999999999776777777777788877 7889 999999999999999999998875544
No 66
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.15 E-value=1.4e-10 Score=73.49 Aligned_cols=58 Identities=38% Similarity=0.405 Sum_probs=49.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+.....+....+..+...+ +.++ +++||+++.|++++|.++++.+
T Consensus 105 ~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 105 EKVPIILVGNKVDLESEREVSSAEGRALAEEW-GCPF-METSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCEEEEEECccchhcCccCHHHHHHHHHHh-CCEE-EEecCCCCCCHHHHHHHHHHhc
Confidence 67999999999999765566666677777777 7889 9999999999999999998754
No 67
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.15 E-value=2.5e-10 Score=72.00 Aligned_cols=60 Identities=40% Similarity=0.581 Sum_probs=50.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.............+...+ +.++ +++||+++.|++++|..+++.+.+
T Consensus 104 ~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 104 DNVPLLLVGNKCDLEDKRQVSSEEAANLARQW-GVPY-VETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHh-CCeE-EEeeCCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999764445566666777777 7899 999999999999999999887753
No 68
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.14 E-value=2.8e-10 Score=72.81 Aligned_cols=61 Identities=44% Similarity=0.611 Sum_probs=53.2
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.+++|+++|+||.|+.+...+..+++..++... +..+ +++||+++.|++++|..+++.+.+
T Consensus 107 ~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 107 NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEH-GLIF-METSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999866667777888888888 8899 999999999999999999988754
No 69
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.14 E-value=2.3e-10 Score=75.88 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=49.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
+++|++|||||+|+.. +.+..+. ..++... ++.| +++||+++.||+++|.+|++.+.+..
T Consensus 98 ~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~-~~~~-~e~SAk~~~~v~~~F~~l~~~i~~~~ 157 (200)
T smart00176 98 ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKK-NLQY-YDISAKSNYNFEKPFLWLARKLIGDP 157 (200)
T ss_pred CCCCEEEEEECccccc-ccCCHHH-HHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHhcc
Confidence 5799999999999864 3444443 4566667 7899 99999999999999999999987653
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.14 E-value=2.2e-10 Score=72.06 Aligned_cols=57 Identities=39% Similarity=0.589 Sum_probs=47.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+.+ +.+.......+.+.. +.++ +++||++|.|++++|.++++.+
T Consensus 105 ~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 105 DDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSY-GIPY-IETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCEEEEEECccccc-ceecHHHHHHHHHHh-CCeE-EEecCCCCCCHHHHHHHHHHHh
Confidence 5789999999999975 345556677777777 7889 9999999999999999998754
No 71
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.14 E-value=2.2e-10 Score=72.40 Aligned_cols=57 Identities=28% Similarity=0.321 Sum_probs=50.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++|+||+|+.....+..+++..+++.. ++++ +++||+++.|++++|.+|+..
T Consensus 105 ~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 105 GDIPMVLVQTKIDLLDQAVITNEEAEALAKRL-QLPL-FRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCEEEEEEChhcccccCCCHHHHHHHHHHc-CCeE-EEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999776667777788888888 8899 999999999999999998754
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.12 E-value=3.7e-10 Score=71.71 Aligned_cols=58 Identities=41% Similarity=0.434 Sum_probs=50.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||.|+...+.+..++...+.... +..+ +++||++|.|++++|+.+++.+
T Consensus 107 ~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 107 SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKN-GLSF-IETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCeEEEEEECccccccccCCHHHHHHHHHHc-CCEE-EEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999876667777777888777 7889 9999999999999999998765
No 73
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.11 E-value=4.2e-10 Score=71.94 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=51.7
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
..++|+++|+||.|+...+.+..+....+.+.++..++ +++||+++.|++++|.++++.+..
T Consensus 104 ~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~~i~~~f~~i~~~~~~ 165 (168)
T cd04177 104 SDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPF-YETSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred CCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceE-EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 45799999999999976666666677777777723789 999999999999999999987653
No 74
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.10 E-value=3.6e-10 Score=72.14 Aligned_cols=57 Identities=37% Similarity=0.383 Sum_probs=48.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++|+||+|+. .+.+..+++..+++.++...+ +++||+++.|+.++|..+++.
T Consensus 113 ~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~-~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 113 ESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPY-FETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeE-EEEECCCCCCHHHHHHHHHhh
Confidence 578999999999996 445677778888887723579 999999999999999999875
No 75
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.10 E-value=3.5e-10 Score=71.54 Aligned_cols=59 Identities=36% Similarity=0.400 Sum_probs=51.7
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
..+++|+++|+||.|+.+...+..++...+.... +..+ +++||+++.|++++|.++++.
T Consensus 102 ~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 102 ASPNIVVILVGNKSDLADQREVTFLEASRFAQEN-GLLF-LETSALTGENVEEAFLKCARS 160 (161)
T ss_pred CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHc-CCEE-EEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999776667777788888888 7899 999999999999999999875
No 76
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.10 E-value=4.4e-10 Score=71.52 Aligned_cols=59 Identities=47% Similarity=0.549 Sum_probs=49.2
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
..++|+++|+||+|+...+.+....+..+++..+...+ +++||++|.|++++|..+++.
T Consensus 106 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 106 ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAV-LETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEE-EEEECCCCCCHHHHHHHHHHh
Confidence 46799999999999987666677777788877723478 999999999999999999865
No 77
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.08 E-value=4.4e-10 Score=75.30 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=49.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|++|||||+|+.. +.+..+.. .+.... +..| |++||++|.||+++|.+|++.+.+...
T Consensus 116 ~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~-~~~~-~e~SAk~~~~i~~~f~~l~~~~~~~~~ 176 (219)
T PLN03071 116 ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQY-YEISAKSNYNFEKPFLYLARKLAGDPN 176 (219)
T ss_pred CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhc-CCEE-EEcCCCCCCCHHHHHHHHHHHHHcCcc
Confidence 5799999999999964 33444444 566666 7899 999999999999999999998876543
No 78
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.08 E-value=5.1e-10 Score=71.72 Aligned_cols=58 Identities=33% Similarity=0.450 Sum_probs=51.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCC---CCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKD---STNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+...+.+....+..+++.+ ...| +++||++ +.+++++|..+++.+
T Consensus 108 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 108 NEVPRILVGNKCDLREQIQVPTDLAQRFADAH-SMPL-FETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCCCEEEEEECccchhhcCCCHHHHHHHHHHc-CCcE-EEEeccCCcCCCCHHHHHHHHHHHh
Confidence 57999999999999877777777788888888 7899 9999999 999999999998766
No 79
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.08 E-value=5.9e-10 Score=71.35 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.+++|+++||||+|+.+. ..+..+++..+++..+...+ +++||+++.||+++|+.+++.+
T Consensus 102 ~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 102 APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCY-VECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE-EEecCCcCCCHHHHHHHHHHHh
Confidence 468999999999998643 24566677788877723479 9999999999999999998765
No 80
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.07 E-value=7.8e-10 Score=70.08 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=48.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+++|+++|+||+|+.+...+....+..+...+ +..+ +++||+++.|++++|..+++.+
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 106 KHMPGVLVGNKMDLADKAEVTDAQAQAFAQAN-QLKF-FKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCEEEEEECcccccccCCCHHHHHHHHHHc-CCeE-EEEeCCCCCChHHHHHHHHHHh
Confidence 46899999999999766666666666666667 7789 9999999999999999998764
No 81
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.07 E-value=5.5e-10 Score=71.54 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=47.0
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
++|+++||||+|+.. +.+.. ....+.+.. ...+ +++||+++.||+++|.+|++.+.+.
T Consensus 104 ~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~-~~~~-~e~Sa~~~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 104 NIPIVLCGNKVDIKD-RKVKA-KQITFHRKK-NLQY-YEISAKSNYNFEKPFLWLARKLLGN 161 (166)
T ss_pred CCcEEEEEEchhccc-ccCCH-HHHHHHHHc-CCEE-EEEeCCCCCChHHHHHHHHHHHHhc
Confidence 799999999999973 33333 344566666 7889 9999999999999999999988764
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.06 E-value=9.3e-10 Score=69.48 Aligned_cols=60 Identities=43% Similarity=0.480 Sum_probs=52.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
+++|+++|+||+|+.....+..+....+.+.. +..+ +++||+++.|++++|..+.+.+.+
T Consensus 104 ~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~-~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 104 PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH-GLPF-FETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCCeEEEEEEchhcccccCCCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHhh
Confidence 67999999999999765566777777888888 7889 999999999999999999988764
No 83
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.05 E-value=7.8e-10 Score=72.11 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=47.0
Q ss_pred CCCeEEEEEecCCCCC-----CCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLES-----EREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
..+| ++||||+||.. ......+++..+++.+ +..+ +++||++|.||+++|.++++.+.+..
T Consensus 104 ~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~-~e~SAk~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 104 TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM-KAPL-IFCSTSHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 4566 68999999952 1112234566777888 7889 99999999999999999999887643
No 84
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.04 E-value=1.3e-09 Score=70.24 Aligned_cols=60 Identities=22% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCeEEEEEecCCCCCCCC--CCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 11 AHDSRVWSNKCDLESERE--VDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+.|+++|+||.|+.+... +..+.+..+...+ +..+ +++||+++.||+++|..+++.+.+.
T Consensus 106 ~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~-~e~Sa~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 106 SVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM-QAEY-WSVSALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred CCeEEEEEEChhcCccccccccHHHHHHHHHHc-CCeE-EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999965432 3345566777777 7789 9999999999999999999887653
No 85
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.04 E-value=2.1e-09 Score=69.27 Aligned_cols=63 Identities=32% Similarity=0.468 Sum_probs=52.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+.|+|+|+||+|+...+.+.......+.+.+ +..+ +++||+++.|++++|.++.+.+.+...
T Consensus 105 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 105 ESVPIVLVGNKSDLHTQRQVSTEEGKELAESW-GAAF-LESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred CCCCEEEEEEchhhhhcCccCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 57899999999999765555655666677777 7789 999999999999999999998877655
No 86
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.03 E-value=2.1e-09 Score=68.39 Aligned_cols=63 Identities=35% Similarity=0.437 Sum_probs=52.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++|+++|+||+|+........+....+.+..+...+ +++||++|.|++++|..+.+.+.+..
T Consensus 108 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 108 ENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPY-FETSAKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred CCceEEEEEECcccccccccCHHHHHHHHHHcCCceE-EEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 3799999999999975555566777777777733789 99999999999999999998887763
No 87
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.01 E-value=1.8e-09 Score=68.30 Aligned_cols=58 Identities=38% Similarity=0.448 Sum_probs=50.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+++|+++|+||+|+.+......+....+.... +..+ +++||++|.|++++|.++++.+
T Consensus 105 ~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 105 PNIIIALVGNKADLESKRQVSTEEAQEYADEN-GLLF-FETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCeEEEEEECccccccCcCCHHHHHHHHHHc-CCEE-EEEECCCCCCHHHHHHHHHHHh
Confidence 67999999999999766666777777888888 7889 9999999999999999998875
No 88
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.99 E-value=3e-09 Score=67.70 Aligned_cols=59 Identities=41% Similarity=0.499 Sum_probs=49.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
..++|+++|+||+|+.+.+.+..+....+.+.. ...+ +++||++|.|++++|..+++.+
T Consensus 110 ~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 110 NNKVITILVGNKIDLAERREVSQQRAEEFSDAQ-DMYY-LETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCeEEEEEECcccccccccCHHHHHHHHHHc-CCeE-EEeeCCCCCCHHHHHHHHHHHh
Confidence 357999999999999766666666666777666 6788 9999999999999999998764
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.99 E-value=2.8e-09 Score=66.94 Aligned_cols=58 Identities=38% Similarity=0.436 Sum_probs=49.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+.....+..+....+.... +..+ +++|++++.|++++|.++++.+
T Consensus 104 ~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~-~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 104 NNISLVIVGNKIDLERQRVVSKSEAEEYAKSV-GAKH-FETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHh
Confidence 37999999999999866666666677777777 7889 9999999999999999998765
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.98 E-value=1.8e-09 Score=69.38 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=46.2
Q ss_pred CCCeEEEEEecCCCCC------------CCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLES------------EREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
+++|+++|+||.|+.. .+.+..+++..+++.. +. .+ +++||+++.||+++|+.+.
T Consensus 103 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~-~~~~~-~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 103 PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI-GACEY-IECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh-CCCeE-EEEeCCCCCCHHHHHHHHH
Confidence 5799999999999863 3456777788888887 65 89 9999999999999998875
No 91
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.97 E-value=2.8e-09 Score=72.80 Aligned_cols=59 Identities=29% Similarity=0.308 Sum_probs=48.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+|+|+||+|+...+.+..+++..+........+ +++||+++.||+++|..|++..
T Consensus 112 ~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~-~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 112 VKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAY-FEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred CCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEE-EEEeCCCCCCHHHHHHHHHHHh
Confidence 5799999999999976556677776666553325679 9999999999999999998754
No 92
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.97 E-value=3.1e-09 Score=68.15 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=46.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcC-----CcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVP-----EIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+.|+++|+||+|+.+ .+..++...+..... .+.+ +++||++|.||+++|.+|++.+.....
T Consensus 99 ~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~g~gv~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 99 RDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYI-QGCDARSGMGLYEGLDWLSRQLVAAGV 165 (169)
T ss_pred CCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEE-EeCcCCCCCCHHHHHHHHHHHHhhccc
Confidence 3589999999999964 345555555544220 1367 899999999999999999988776543
No 93
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.97 E-value=2.7e-09 Score=67.88 Aligned_cols=58 Identities=24% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+++|+++|+||+|+... . ......+.+.. +.++ +++||+++.|++++|..+++.+.++
T Consensus 103 ~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 103 PEIPCIVVANKIDLDPS--V-TQKKFNFAEKH-NLPL-YYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCCcEEEEEECccCchh--H-HHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999998532 1 23345566666 7889 9999999999999999999888765
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.96 E-value=3.8e-09 Score=67.60 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=45.8
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+++|+++|+||+|+.+. ..+....+..++...+...+ +++||++|.||+++|.++++.+
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~-~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 104 PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY-MECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEE-EEeccccCcCHHHHHHHHHHHh
Confidence 57999999999998642 12344556666766623579 9999999999999999998654
No 95
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.95 E-value=2e-09 Score=69.20 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=46.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|+++|+||+|+.+...........+.+.+ +. .+ +++||+++.|++++|..+++.+.
T Consensus 107 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~-~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 107 GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKL-GLPPP-LHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CCCeEEEEEEcccccccccccccCHHHHHHHc-CCCCC-EEEEeccCccHHHHHHHHHHHhh
Confidence 47999999999999654433333455666666 54 57 99999999999999999998764
No 96
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.93 E-value=3.8e-09 Score=66.21 Aligned_cols=57 Identities=37% Similarity=0.520 Sum_probs=49.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++|+||+|+.....+..+.+..+...+ +.++ +++||+++.|++++|..|++.
T Consensus 103 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~-~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 103 EDIPIVLVGNKCDLENERQVSKEEGKALAKEW-GCPF-IETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCcEEEEEECCcccccceecHHHHHHHHHHc-CCcE-EEeccCCCCCHHHHHHHHHhh
Confidence 57999999999999865666777788888888 7889 999999999999999999865
No 97
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.93 E-value=2.4e-09 Score=68.03 Aligned_cols=55 Identities=22% Similarity=0.094 Sum_probs=42.9
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+.|+++|+||+|+.....+.. ...+.... ...+ +++||+++.|++++|.++.+.+
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSE--IEEEEELE-GEEV-LKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cCCeEEEEEccccCchhhHHH--HHHhhhhc-cCce-EEEEecccCCHHHHHHHHHHHh
Confidence 789999999999975433221 33444444 6789 9999999999999999998765
No 98
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.92 E-value=5.2e-09 Score=66.00 Aligned_cols=56 Identities=32% Similarity=0.379 Sum_probs=48.3
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
++|+++|+||+|+.+.+.+..++...+.+.. +..+ +++||+++.|++++|.++.+.
T Consensus 105 ~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 105 DVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL-NAMF-IETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CCEEEEEEEChhccccCccCHHHHHHHHHHh-CCEE-EEEeCCCCCCHHHHHHHHHHh
Confidence 6999999999999665666777777777777 7889 999999999999999999764
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.92 E-value=7e-09 Score=67.51 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=42.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc----CCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV----PEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+++|++||+||.|+.+. ...++........ ..+.+ +++||++|+||+++|.+|++.+.++
T Consensus 117 ~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~-~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 117 RDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYI-QSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEE-EeccCCCCCCHHHHHHHHHHHHhhc
Confidence 57899999999999753 2333333332211 01245 7899999999999999999887654
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.86 E-value=8.7e-09 Score=66.19 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=41.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhh---c-CCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEY---V-PEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~---~-~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
+++|++||+||+|+.+. +..++...+... . ....+ +++||++|.||+++|.+|++
T Consensus 109 ~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~-~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 109 RDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYV-QPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred cCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEE-EEeeCCCCCChHHHHHHHhc
Confidence 46899999999998642 345555554321 1 13468 99999999999999999864
No 101
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.86 E-value=1.3e-08 Score=64.27 Aligned_cols=57 Identities=30% Similarity=0.346 Sum_probs=47.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
..++|+++|+||+|+.. .....+....+.... +..+ +++||++|.|++++|..+.+.
T Consensus 104 ~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 104 NNDIVKMLVGNKIDKEN-REVTREEGLKFARKH-NMLF-IETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCcEEEEEECCcccc-cccCHHHHHHHHHHc-CCEE-EEEecCCCCCHHHHHHHHHHh
Confidence 46799999999999973 344566677788877 8889 999999999999999998764
No 102
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.85 E-value=1e-08 Score=63.64 Aligned_cols=53 Identities=25% Similarity=0.213 Sum_probs=41.3
Q ss_pred CeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
.|+++|+||+|+.+. ....+....+.+..+..++ +++||+++.|++++|..++
T Consensus 89 ~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 89 KPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPI-FEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcE-EEEecCCCCCHHHHHHHHh
Confidence 499999999999643 3445556667766623479 9999999999999998874
No 103
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.84 E-value=2.2e-08 Score=65.18 Aligned_cols=61 Identities=18% Similarity=0.105 Sum_probs=42.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc----CCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV----PEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++|++||+||.|+.+.. ...+........ ..+.+ +++||++|.|++++|.+|++.+.+++
T Consensus 117 ~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~-~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 117 RDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYI-QGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred cCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEE-EeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 468999999999986422 223322221111 02346 79999999999999999998887765
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.82 E-value=1.2e-08 Score=65.19 Aligned_cols=60 Identities=25% Similarity=0.184 Sum_probs=43.3
Q ss_pred CCCeEEEEEecCCCCCCCCCC--HHHHHHHhhhcCC-cceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVD--FNEAEEMGEYVPE-IHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++|+++|+||+|+.+..... .+....+...++. ..+ +++||+++.|++++|+.+++.+.
T Consensus 102 ~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 102 VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETC-VECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEE-EEeccccccCHHHHHHHHHHHhc
Confidence 579999999999997544321 2223333333323 378 99999999999999999987764
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.81 E-value=1.5e-08 Score=65.01 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=41.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++|+||+|+.+.. ..+....+.. .. .+++ +++||++|.|++++|.+++.
T Consensus 114 ~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 114 AGATLLILANKQDLPGAL--SEEEIREALELDKISSH-HWRI-QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred cCCCEEEEEECcccccCC--CHHHHHHHhCccccCCC-ceEE-EeccCCCCcCHHHHHHHHhc
Confidence 679999999999996532 3344444432 23 5679 99999999999999998864
No 106
>PRK04213 GTP-binding protein; Provisional
Probab=98.81 E-value=1.2e-08 Score=67.03 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=43.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc---------ceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI---------HYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++|+++|+||+|+.+.. .+....+.+.+ +. .+ +++||++| |++++|.+|++.+.+..
T Consensus 129 ~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~-~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR---DEVLDEIAERL-GLYPPWRQWQDII-APISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred cCCCeEEEEECccccCcH---HHHHHHHHHHh-cCCccccccCCcE-EEEecccC-CHHHHHHHHHHhhcCcc
Confidence 579999999999986432 22344444444 32 58 99999999 99999999998876543
No 107
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.81 E-value=1.3e-08 Score=66.15 Aligned_cols=56 Identities=21% Similarity=0.136 Sum_probs=42.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc---------------CCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV---------------PEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.+.|+++|+||+|+.. .+..+....+.... ....+ +++||++++|++++|.+|++.
T Consensus 119 ~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 119 ANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV-FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE-EEeEecCCCChHHHHHHHHhh
Confidence 5699999999999864 44555665554321 12468 999999999999999999865
No 108
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.81 E-value=2.8e-08 Score=65.37 Aligned_cols=59 Identities=34% Similarity=0.267 Sum_probs=45.4
Q ss_pred CCCeEEEEEecCCCCC-CCCCCHHHHHHHhh-hcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLES-EREVDFNEAEEMGE-YVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|+++|+||.|+.. .+.+.......... .+ +..+ +++||++|.|++++|.++++.+.
T Consensus 103 ~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 103 KFVPIVVVGNKADSLEEERQVPAKDALSTVELDW-NCGF-VETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCcEEEEEEccccccccccccHHHHHHHHHhhc-CCcE-EEecCCCCCCHHHHHHHHHHHhh
Confidence 5799999999999865 34444444443333 34 5788 99999999999999999998775
No 109
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.79 E-value=2.1e-08 Score=71.25 Aligned_cols=63 Identities=19% Similarity=0.056 Sum_probs=48.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+.|+++|+||+|+.+...+.......+.... ...+ +++||++++||+++|.+|.+.+.+...
T Consensus 270 ~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~-~~~i-~~iSAktg~GI~eL~~~L~~~l~~~~~ 332 (335)
T PRK12299 270 ADKPRILVLNKIDLLDEEEEREKRAALELAAL-GGPV-FLISAVTGEGLDELLRALWELLEEARR 332 (335)
T ss_pred ccCCeEEEEECcccCCchhHHHHHHHHHHHhc-CCCE-EEEEcCCCCCHHHHHHHHHHHHHhhhc
Confidence 36899999999999754433333344444555 6789 999999999999999999998876544
No 110
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.79 E-value=1.6e-08 Score=64.21 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=45.0
Q ss_pred CCCeEEEEEecCCCCCCCC-----------CCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESERE-----------VDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
+++|+++|+||+|+.+... +..+.+..+...+ +. .+ +++||+++.|++++|..+++
T Consensus 103 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 103 PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI-GAIGY-MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh-CCeEE-EEeecCCCCCHHHHHHHHhh
Confidence 4799999999999875442 3455666777777 55 89 99999999999999998865
No 111
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.78 E-value=2.6e-08 Score=61.93 Aligned_cols=55 Identities=38% Similarity=0.459 Sum_probs=47.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
.+.|+++|+||+|+........+....+...+ +.++ +++||+++.|++++|.+|+
T Consensus 104 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~-~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 104 ENIPIILVGNKIDLEDQRQVSTEEAQQFAKEN-GLLF-FETSAKTGENVEELFQSLA 158 (159)
T ss_pred CCCcEEEEEEcccccccccccHHHHHHHHHHc-CCeE-EEEecCCCCCHHHHHHHHh
Confidence 56999999999999644556677778888887 8899 9999999999999999875
No 112
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.77 E-value=4.7e-09 Score=67.14 Aligned_cols=56 Identities=27% Similarity=0.172 Sum_probs=41.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCH----HHHHHHhhhcCCcceEEEcccCC------CCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDF----NEAEEMGEYVPEIHYVMETSAKD------STNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~------~~~v~~lf~~l~~ 67 (106)
+++|+++|+||.|+...+.+.. ..+..+++.. ++.+ |++||++ ++||.++|+.+..
T Consensus 98 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~-~~~~-~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 98 PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGR-RWIL-QGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCC-ceEE-EEeeecCCCChhHHHHHHHHHHHHhc
Confidence 6899999999999976543221 1234445555 7788 9999988 9999999988753
No 113
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.77 E-value=9.3e-09 Score=70.17 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++|+||+||.+...+..+....+ ..+ ++.+ |++||+++.|++++|..+.+
T Consensus 66 ~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~-g~~v-~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 66 QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNI-GYQV-LMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCCCEEEEEECcccCCCHHHHHHHHHHH-HHC-CCeE-EEEecCCchhHHHHHhhhcC
Confidence 6799999999999975443333333333 446 7889 99999999999999988764
No 114
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.76 E-value=6.1e-09 Score=67.29 Aligned_cols=57 Identities=23% Similarity=0.139 Sum_probs=39.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc----CCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV----PEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|++||+||.||.+.. ..++........ ....+ +++||++|.||+++|.+|++.+
T Consensus 113 ~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~-~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 113 RDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYI-QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred cCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEE-EEeeCCCCCCHHHHHHHHHHHh
Confidence 468999999999996432 222322222111 12346 7999999999999999998765
No 115
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.73 E-value=7.5e-09 Score=65.85 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=37.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHH-HHHHhh----hcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNE-AEEMGE----YVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~-~~~~~~----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.+.|++||+||+|+.+.. ...+ ...+.. .. .+.+ +++||++|.||+++|.+|++
T Consensus 100 ~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~-~~~~-~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 100 RDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNR-NWYI-QATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred cCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCC-CEEE-EEeeCCCCCCHHHHHHHHhc
Confidence 358999999999996432 2222 222221 12 3457 89999999999999999864
No 116
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.72 E-value=5.2e-08 Score=62.19 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=46.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCC--cceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPE--IHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+.|+++++||+|+.+. ..+....+.+.. + .++ +++||++++|++++|..+++.+.+...
T Consensus 90 ~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~-~~~~p~-~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 151 (158)
T PRK15467 90 VSKRQIAVISKTDMPDA---DVAATRKLLLET-GFEEPI-FELNSHDPQSVQQLVDYLASLTKQEEA 151 (158)
T ss_pred CCCCeEEEEEccccCcc---cHHHHHHHHHHc-CCCCCE-EEEECCCccCHHHHHHHHHHhchhhhc
Confidence 45789999999998642 344556666666 4 489 999999999999999999887765533
No 117
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.71 E-value=4e-08 Score=63.06 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=41.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc---ceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI---HYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+.+.. .......+.+.+ +. .+ +++||++|.|++++|..+++.+
T Consensus 118 ~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~-~~~~~~~-~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 118 NNLEIIPVINKIDLPSAD--PERVKQQIEDVL-GLDPSEA-ILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred cCCCEEEEEECCCCCcCC--HHHHHHHHHHHh-CCCcccE-EEeeccCCCCHHHHHHHHHhhC
Confidence 578999999999986422 122233444444 33 48 9999999999999999998765
No 118
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.70 E-value=5e-08 Score=63.43 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=45.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhh--c---CCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEY--V---PEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~---~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+... ........+... . ....+ +++||+++.|++++|.+|++.+.+...
T Consensus 108 ~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 108 QGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHV-QPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred CCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEE-EEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 57899999999998642 233333333321 1 12457 999999999999999999998876655
No 119
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.70 E-value=3.7e-08 Score=62.61 Aligned_cols=56 Identities=25% Similarity=0.157 Sum_probs=42.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhh-cCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEY-VPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.+.|+++|+||+|+.+.... ......+... . ...+ +++||+++.|++++|.++++.
T Consensus 113 ~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 113 LEKPRIVVLNKIDLLDEEEL-FELLKELLKELW-GKPV-FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred cccccEEEEEchhcCCchhh-HHHHHHHHhhCC-CCCE-EEEecCCCCCHHHHHHHHHhh
Confidence 36899999999999754433 2333344444 3 5678 999999999999999998764
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.69 E-value=5.1e-08 Score=61.43 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++|+||+|+.+.. .......... .. ...+ +++||++|.|++++|.+|++
T Consensus 103 ~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~-~~~~-~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 103 RRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDK-PWHI-FASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCc-eEEE-EEeeCCCCCchHHHHHHHhc
Confidence 579999999999996432 2222222211 12 3458 99999999999999999864
No 121
>KOG0393|consensus
Probab=98.67 E-value=3.8e-08 Score=65.08 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=53.6
Q ss_pred CCCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+++|+||||+|.||.++ ..++.+++..+++..+-..| +|+||++..|+.++|+..++.....
T Consensus 107 cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y-~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 107 CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY-LECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee-eeehhhhhCCcHHHHHHHHHHHhcc
Confidence 378999999999999743 25777888899999844789 9999999999999999998877654
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.67 E-value=1.9e-08 Score=63.58 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=38.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHH-HHhh----hcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAE-EMGE----YVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++|+||+|+.+.. ...... .+.. .. +.++ +++||+++.|++++|++|++
T Consensus 99 ~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 99 KGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDR-TWSI-FKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCC-cEEE-EEeeccCCCCHHHHHHHHhc
Confidence 478999999999986432 222222 2211 11 3468 99999999999999999875
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.67 E-value=6.7e-08 Score=61.30 Aligned_cols=55 Identities=22% Similarity=0.206 Sum_probs=40.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc------CCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV------PEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++|+||+|+... ........+.+.. ...++ +++||++|.|++++|.+|++
T Consensus 106 ~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 106 EGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLV-LPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred cCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEE-EEeeCCCCcCHHHHHHHHhc
Confidence 57999999999998653 3334444443321 13578 99999999999999999875
No 124
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.66 E-value=3.7e-08 Score=62.08 Aligned_cols=54 Identities=22% Similarity=0.119 Sum_probs=38.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHh------hhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMG------EYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++|+||+|+... ....+..... ... ++++ +++||++|+||+++|++|++
T Consensus 100 ~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 100 KGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDR-DWYV-QPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCC-cEEE-EecccccCCChHHHHHHHhc
Confidence 57999999999998642 2222222221 112 4568 99999999999999999864
No 125
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.65 E-value=9.7e-08 Score=59.81 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++|+||+|+.+...+... ...+...+ +.++ +++||.++.|++++|..+.+.
T Consensus 100 ~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~-~~~~-~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 100 LGLPVVVALNMIDEAEKRGIKID-LDKLSELL-GVPV-VPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred cCCCEEEEEehhhhcccccchhh-HHHHHHhh-CCCe-EEEEccCCCCHHHHHHHHHHH
Confidence 57899999999999755433332 34566666 7789 999999999999999988765
No 126
>KOG4252|consensus
Probab=98.63 E-value=3.6e-08 Score=64.34 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=58.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhcccc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~ 77 (106)
.++|.++|-||+||.++..+...+.+.+++.. ...+ +.+|++...||..+|..|++.+.+++..++
T Consensus 123 ~~IPtV~vqNKIDlveds~~~~~evE~lak~l-~~Rl-yRtSvked~NV~~vF~YLaeK~~q~~kq~~ 188 (246)
T KOG4252|consen 123 ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL-HKRL-YRTSVKEDFNVMHVFAYLAEKLTQQKKQSL 188 (246)
T ss_pred ccCCeEEeeccchhhHhhhcchHHHHHHHHHh-hhhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999988888888888888888 7888 999999999999999999998888766433
No 127
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.62 E-value=1.5e-07 Score=60.57 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=39.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHH-HHHh----hhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEA-EEMG----EYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++++||+|+... ...++. ..+. ... .+.+ +++||++|.||+++|.+|++
T Consensus 115 ~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~-~~~~-~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 115 RKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDH-TWHI-QGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCC-ceEE-EecccCCCCCHHHHHHHHhc
Confidence 46899999999998642 233332 2222 223 4578 99999999999999999874
No 128
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.59 E-value=2.4e-07 Score=61.54 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=48.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+. .+..+ ...+.... ++.+ +++||+++.|++++|.+|++.+.....
T Consensus 112 ~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~-~~~~-~e~Sa~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 112 ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKK-NLQY-YDISAKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred CCCCEEEEEECccCccc-cCCHH-HHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHhhccc
Confidence 57899999999998643 23333 33556666 7889 999999999999999999998876644
No 129
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.55 E-value=9.6e-08 Score=60.13 Aligned_cols=55 Identities=20% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
..+.|+++|+||+|+.... ..++...... .. ..++ +++||++|.|++++|..|..
T Consensus 98 ~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 98 LKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGR-RWHI-QPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred cCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCC-cEEE-EEeeCCCCCCHHHHHHHHhh
Confidence 3579999999999987533 2233333222 23 4579 99999999999999998864
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.54 E-value=6.8e-08 Score=63.57 Aligned_cols=52 Identities=23% Similarity=0.127 Sum_probs=39.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++|+||+|+.+.... ....... ..++ +++||+++.|++++|.+|.+.
T Consensus 152 ~~~~viiV~NK~Dl~~~~~~-----~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 152 EDIPMILVLNKIDLLDDEEL-----EERLEAG-RPDA-VFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCEEEEEEccccCChHHH-----HHHhhcC-CCce-EEEEcCCCCCHHHHHHHHHhh
Confidence 46899999999998643221 1333344 5678 999999999999999998764
No 131
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.52 E-value=2.6e-07 Score=65.63 Aligned_cols=57 Identities=26% Similarity=0.231 Sum_probs=43.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.+.|+++|+||+|+.+... ..+....+.+.. +..+ +++||++++|++++|..+.+.+
T Consensus 272 ~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~-~~~v-i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 272 AEKPRIVVLNKIDLLDEEE-LAELLKELKKAL-GKPV-FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCEEEEEeCccCCChHH-HHHHHHHHHHHc-CCcE-EEEEccCCcCHHHHHHHHHHHh
Confidence 4689999999999965432 223344455556 6789 9999999999999999998754
No 132
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.52 E-value=1.4e-07 Score=60.14 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.+.|+++|+||+|+.................. ...+ +++||+++.|++++++.+.+.
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEELVRELALEE-GAEV-VPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHHHHHHhcCC-CCCE-EEEehhhhcCHHHHHHHHHhh
Confidence 37899999999999754432222122333334 6678 999999999999999988754
No 133
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.46 E-value=3.4e-07 Score=57.10 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=39.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.+.|+++|+||+|+.+.... ....... +. .+ +++|++++.|++++|+++++.
T Consensus 104 ~~~piiiv~nK~D~~~~~~~-----~~~~~~~-~~~~~-~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 104 SKKPVILVVNKVDNIKEEDE-----AAEFYSL-GFGEP-IPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred cCCCEEEEEECcccCChHHH-----HHHHHhc-CCCCe-EEEecccCCCHHHHHHHHHhh
Confidence 46899999999998753321 2222334 33 78 999999999999999999865
No 134
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.45 E-value=1.1e-06 Score=57.37 Aligned_cols=60 Identities=18% Similarity=0.101 Sum_probs=42.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHh-----hhc--CCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMG-----EYV--PEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.+.|+++|+||+|+.+.. ........+. +.. ....+ +.+||+++.|+++++..+.+.++.
T Consensus 60 ~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i-~~vSA~~~~gi~eL~~~l~~~l~~ 126 (190)
T cd01855 60 GNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLGLKPKDV-ILISAKKGWGVEELINAIKKLAKK 126 (190)
T ss_pred CCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcCCCcccE-EEEECCCCCCHHHHHHHHHHHhhc
Confidence 468999999999986432 2233333332 222 01268 999999999999999999887753
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.43 E-value=3.7e-07 Score=57.39 Aligned_cols=53 Identities=23% Similarity=0.105 Sum_probs=37.3
Q ss_pred eEEEEEecCCCCCCCC--CCHHHHHHHhhh---cCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 13 DSRVWSNKCDLESERE--VDFNEAEEMGEY---VPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
|+++|+||+|+.+... ..........+. . +.++ +++||+++.|++++|..+.+
T Consensus 106 ~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 106 RGLVVLTKADLVDEDWLELVEEEIRELLAGTFLA-DAPI-FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cEEEEEECccccCHHHHHHHHHHHHHHHHhcCcC-CCcE-EEEeCCCCcCHHHHHHHHhh
Confidence 8999999999964321 111222333332 3 5689 99999999999999988764
No 136
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.40 E-value=1e-06 Score=57.29 Aligned_cols=56 Identities=14% Similarity=0.037 Sum_probs=41.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc-----------CCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV-----------PEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++|+||+|+.. .+..++........ +...+ +++||++++|+++++++|.+.
T Consensus 117 ~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i-~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 117 ATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEV-FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEE-EEeecccCCChHHHHHHHHhh
Confidence 5789999999999863 34455544433211 13458 999999999999999999764
No 137
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.40 E-value=5.4e-07 Score=68.37 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=47.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+.++|+++|+||+|+.+...+. .....+.+.. +.++ +++||++|+|++++|+.+.+..
T Consensus 97 ~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~l-g~pv-v~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 97 ELGIPMILALNLVDEAEKKGIR-IDEEKLEERL-GVPV-VPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHc-CCCE-EEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999986544443 3456677778 8899 9999999999999999998653
No 138
>PRK15494 era GTPase Era; Provisional
Probab=98.39 E-value=2.5e-07 Score=65.91 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc-CCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYV-PEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
..+.|.++|+||+|+.+. .......+.... +...+ |++||++|.|++++|.+|++.++..
T Consensus 158 ~~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i-~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 158 SLNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLL-FPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred hcCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEE-EEEeccCccCHHHHHHHHHHhCCCC
Confidence 345788899999998643 133444444433 23578 9999999999999999998877654
No 139
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.38 E-value=7e-07 Score=66.08 Aligned_cols=64 Identities=22% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCCCeEEEEEecCCCCCCCCC--CHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 9 DSAHDSRVWSNKCDLESEREV--DFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
..++|+|+|+||+||.+.... ...............++ +++||++|.||+++|..+++.+....
T Consensus 320 ~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~-~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 320 EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR-VNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 367899999999999642210 01111111122224688 99999999999999999988775443
No 140
>PRK00089 era GTPase Era; Reviewed
Probab=98.38 E-value=3e-07 Score=63.82 Aligned_cols=61 Identities=25% Similarity=0.205 Sum_probs=45.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.+.|+++|+||+|+.............+.+.++...+ +.+||+++.|+++++..+.+.++.
T Consensus 112 ~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i-~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 112 VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEI-VPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeE-EEecCCCCCCHHHHHHHHHHhCCC
Confidence 4689999999999973322222334445554434678 999999999999999999887754
No 141
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.37 E-value=2e-07 Score=64.26 Aligned_cols=62 Identities=11% Similarity=-0.052 Sum_probs=43.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
..+.|+++|+||+|+.+... .......+....+...+ +++||++|.|+++++..+.+.++..
T Consensus 105 ~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v-~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 105 NLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDI-VPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred hcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCce-EEEecCCCCCHHHHHHHHHHhCCCC
Confidence 35789999999999864322 12233344444423478 9999999999999999998776543
No 142
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.37 E-value=1.5e-06 Score=55.37 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=37.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc----CCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV----PEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++++||+|+.+.. ............ ....+ +++||++|+|++++|++|++
T Consensus 114 ~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~-~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 114 AGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHI-QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred cCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEE-EEeECCCCCCHHHHHHHHhc
Confidence 468999999999986432 222222222111 01247 89999999999999999975
No 143
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.37 E-value=9.1e-07 Score=55.25 Aligned_cols=57 Identities=23% Similarity=0.161 Sum_probs=41.2
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+.|+++|+||+|+........+....+....+..++ +++|++++.|++++|..|.+.
T Consensus 111 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 111 KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEI-FPISALKGENVDELLEEIVKY 167 (168)
T ss_pred CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCce-EEEEeccCCChHHHHHHHHhh
Confidence 589999999999873222222333344444434688 999999999999999988764
No 144
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.36 E-value=1.6e-06 Score=53.44 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=38.5
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCL 65 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 65 (106)
++|+++|+||.|+.... ........+.... ...+ +++||+++.|+.++|..|
T Consensus 108 ~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~-~~~~-~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAK-LKTHVAFLFAKLN-GEPI-IPLSAETGKNIDSAFKIV 159 (161)
T ss_pred CCcEEEEEEcccCCcch-hhHHHHHHHhhcc-CCce-EEeecCCCCCHHHHHHHh
Confidence 78999999999986533 2222223333333 6679 999999999999999876
No 145
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.35 E-value=2.4e-06 Score=62.60 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=46.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+.|.++|+||+||... .+....+.+.. ...+ +.+||++++|+++++.+|.+.+.+...
T Consensus 273 ~~kP~IVV~NK~DL~~~----~e~l~~l~~~l-~~~i-~~iSA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 273 LERPQIVVANKMDLPEA----EENLEEFKEKL-GPKV-FPISALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred cCCcEEEEEeCCCCcCC----HHHHHHHHHHh-CCcE-EEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 36899999999998432 23445566666 5778 999999999999999999988876543
No 146
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.35 E-value=1.2e-06 Score=54.48 Aligned_cols=51 Identities=22% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.+.|+++|+||+|+.+.... ..... ..++ +++||+++.|+++++.+|.+.+
T Consensus 106 ~~~~vi~v~nK~D~~~~~~~-------~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 106 ADKPIIVVLNKSDLLPDSEL-------LSLLA-GKPI-IAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cCCCEEEEEEchhcCCcccc-------ccccC-CCce-EEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999998754322 22334 5688 9999999999999999987654
No 147
>KOG4423|consensus
Probab=98.34 E-value=2.1e-06 Score=56.45 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=51.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCC-HHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVD-FNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+..+|+++..||+|........ ...+..+.+.++...+ ++||+|.+.|++++...+++.+..+..
T Consensus 133 g~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gw-tets~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 133 GTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGW-TETSAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred CCcchheeccchhccChHhhhhhHHHHHHHHhccCccce-eeeccccccChhHHHHHHHHHHHhhcc
Confidence 3568999999999986433222 3456677788856789 999999999999999999998887754
No 148
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.34 E-value=3.8e-07 Score=58.39 Aligned_cols=55 Identities=20% Similarity=0.103 Sum_probs=38.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHH------HHHhhhc-CCcceEEEcccCCC------CCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEA------EEMGEYV-PEIHYVMETSAKDS------TNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~------~~~~~~~-~~~~~~~~~Sa~~~------~~v~~lf~~l~~ 67 (106)
.++|+++|+||.|+..... ..+. ..+++.. ..+.+ +++||++| .|+.+.|+||.+
T Consensus 99 ~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~-~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 99 SGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHI-EPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEE-EEeEceeCCCCccccCHHHHHHHHhc
Confidence 4789999999999975432 2221 1222222 12456 78999998 899999999964
No 149
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.33 E-value=4e-06 Score=54.28 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhh--c---CCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEY--V---PEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~---~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++++||.|+.+ ....++....... . ..+.+ +.+||.+|+|+.+.|++|.+.+
T Consensus 114 ~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v-~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 114 KDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSV-FSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEE-EEEBTTTTBTHHHHHHHHHHHH
T ss_pred ccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEE-EeeeccCCcCHHHHHHHHHhcC
Confidence 4799999999999864 3445555444321 1 14567 9999999999999999998764
No 150
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.31 E-value=8e-07 Score=55.20 Aligned_cols=54 Identities=24% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHh-----hhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMG-----EYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++|+||.|+.+... ........ ... ...+ +++|++++.|++++|.+|++
T Consensus 100 ~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 100 EGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDR-EVSC-YSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCC-ceEE-EEEEeccCCChHHHHHHHhh
Confidence 5789999999999865432 22222111 112 3578 99999999999999999865
No 151
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.31 E-value=2.5e-06 Score=51.81 Aligned_cols=57 Identities=40% Similarity=0.435 Sum_probs=41.8
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHH-HHHHhhhcCCcceEEEcccCCCCCHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNE-AEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
...++|+++|+||+|+.......... ........ ..++ +++|+..+.|+.+++.+|.
T Consensus 99 ~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~-~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 99 EGENIPIILVGNKIDLPEERVVSEEELAEQLAKEL-GVPY-FETSAKTGENVEELFEELA 156 (157)
T ss_pred ccCCCcEEEEEeccccccccchHHHHHHHHHHhhc-CCcE-EEEecCCCCChHHHHHHHh
Confidence 44689999999999987543322221 22333444 7889 9999999999999999875
No 152
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.30 E-value=1.2e-06 Score=55.41 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=42.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.+.|+++|+||+|+.+... ......+.+.. +.++ +.+||+++.|+++++..+.+.++.
T Consensus 40 ~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~-~~~~-~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 40 LGKKLLIVLNKADLVPKEV--LEKWKSIKESE-GIPV-VYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhC-CCcE-EEEEccccccHHHHHHHHHHHHhh
Confidence 4689999999999853211 11111233344 6678 999999999999999999887754
No 153
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.29 E-value=2.1e-06 Score=56.99 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=38.7
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHhhh-cCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 15 RVWSNKCDLESEREVDFNEAEEMGEY-VPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 15 ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
++++||+|+.+......+......+. .+..++ |++||++|+|++++|+++.+..
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i-~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAKKMRGEKPF-IFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHHHhCCCCCE-EEEECCCCCCHHHHHHHHHhhc
Confidence 78999999974212223333333333 336789 9999999999999999998654
No 154
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.29 E-value=7.9e-07 Score=58.86 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=38.5
Q ss_pred eEEEEEecCCCCCCCCCC--HHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 13 DSRVWSNKCDLESEREVD--FNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
|+++|+||+|+.+..... .+....+...+ .+.++ +.+||+++.|++++|..+.+.++
T Consensus 139 ~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i-~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 139 HIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPI-IPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred cEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcE-EEEeCCCCCCHHHHHHHHHHhCC
Confidence 689999999986422111 12222333221 14678 99999999999999999987653
No 155
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.27 E-value=2.4e-06 Score=63.62 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=45.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+.|+|+|+||+|+.+...+. +......... ++.+ |.+||+++.|+++++.+|.+.+.....
T Consensus 283 ~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~-g~~V-f~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 283 AERPRLVVLNKIDVPDARELA-EFVRPELEAR-GWPV-FEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred cCCCEEEEEECccchhhHHHH-HHHHHHHHHc-CCeE-EEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 368999999999996433211 1222233445 6789 999999999999999999988876543
No 156
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.27 E-value=3.2e-06 Score=53.27 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=39.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHH-HHHhhhc---CCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEA-EEMGEYV---PEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~---~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.+.|+++|+||+|+.+......... ....+.+ +..++ +.+||+++.|+++++..+.+.
T Consensus 112 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 112 EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPI-VFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCce-EEEeccCCCCHHHHHHHHHHh
Confidence 4689999999999875421122221 2222222 13578 999999999999999988753
No 157
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.27 E-value=1.8e-06 Score=53.23 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=40.8
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHH---HHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNE---AEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
..++|+++|+||+|+.......... ........ ..++ +++||+++.|+++++..+.+.
T Consensus 102 ~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 102 ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLL-GLPV-IAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hcCCeEEEEEEccccCChhhHHHHHHHHHhhccccc-CCce-EEEeeeccCCHHHHHHHHHhh
Confidence 4689999999999987543222110 11112223 6789 999999999999999998764
No 158
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.26 E-value=2.1e-06 Score=57.03 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=39.5
Q ss_pred CeEEEEEecCCCCCCCCCCHHHHHHHhhhc-CCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREVDFNEAEEMGEYV-PEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.|.++++||+|+.+.............+.. +..++ +++||+++.|++++|+++.+.
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i-~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEI-ILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCE-EEEECCCCCCHHHHHHHHHHh
Confidence 467999999999643222222333333332 35789 999999999999999999764
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.25 E-value=3.4e-06 Score=61.41 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=41.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHH-HHhhh---cCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAE-EMGEY---VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+.|+++|+||+|+.+... ..+... ..... .++.++ +++||++|.|++++|..+.+.....
T Consensus 282 ~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~v-i~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 282 AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPI-VFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCce-EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999862111 111111 11111 224689 9999999999999999998766543
No 160
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.25 E-value=2.6e-06 Score=53.84 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=39.2
Q ss_pred CCCeEEEEEecCCCCCCCCCC-HHHHHHHhh----hc-CCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVD-FNEAEEMGE----YV-PEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~-~~~~~~~~~----~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+....... ......+.. .+ ...++ +++||+++.|++++|.+|.+..
T Consensus 101 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 101 ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQI-VPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcE-EEeecccCCCHHHHHHHHHHhh
Confidence 578999999999986422100 011111111 11 13578 9999999999999999997654
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.25 E-value=2.2e-06 Score=55.03 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=42.0
Q ss_pred CCCeEEEEEecCCCCCCCCCC--HHHHHHHhhhc-------------CCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVD--FNEAEEMGEYV-------------PEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.+.|+++|+||+|+....... ........+.. ...++ +++||+++.|++++|..+.+.++
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPI-VPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceE-EEEecccCcCHHHHHHHHHhhCC
Confidence 478999999999987422211 12223333221 14678 99999999999999999987763
No 162
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.24 E-value=4.3e-06 Score=56.64 Aligned_cols=51 Identities=22% Similarity=0.112 Sum_probs=39.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
..+|.++|+||+|+.+ .++...++.. ..+ +++||+++.|++++|+.+.+.+
T Consensus 175 ~y~p~iiV~NK~Dl~~-----~~~~~~~~~~---~~~-~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 175 VYIPCLYVYNKIDLIS-----IEELDLLARQ---PNS-VVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eEeeEEEEEECccCCC-----HHHHHHHhcC---CCE-EEEcCCCCCCHHHHHHHHHHHh
Confidence 3579999999999853 3344444443 357 9999999999999999998754
No 163
>PRK12288 GTPase RsgA; Reviewed
Probab=98.22 E-value=2.3e-06 Score=61.20 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=41.7
Q ss_pred CCCCeEEEEEecCCCCCCCCC-CHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREV-DFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
..++|.++|+||+||.+.... ............ ++++ +.+||+++.|+++++..+...
T Consensus 148 ~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-g~~v-~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 148 TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-GYRV-LMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-CCeE-EEEeCCCCcCHHHHHHHHhhC
Confidence 357899999999999643210 111222334456 7789 999999999999999888654
No 164
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.21 E-value=2.8e-06 Score=55.48 Aligned_cols=59 Identities=22% Similarity=0.100 Sum_probs=40.3
Q ss_pred CCeEEEEEecCCCCCCCCC--CHHHHHHH-hhh-----cCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREV--DFNEAEEM-GEY-----VPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~--~~~~~~~~-~~~-----~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
++|+++|+||+|+...... ..+..... ... ..++++ +.+||+++.|+++++..+..+++
T Consensus 120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v-i~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 120 CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPI-IPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCE-EEEeccCCCCHHHHHHHHHhccc
Confidence 6799999999998632211 11112211 111 125789 99999999999999999987764
No 165
>PRK12289 GTPase RsgA; Reviewed
Probab=98.19 E-value=3.1e-06 Score=60.66 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=41.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|++||+||+||.+... ..........+ ++.+ +.+||+++.|+++++..+...+
T Consensus 119 ~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~-g~~v-~~iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 119 TGLEIVLCLNKADLVSPTE--QQQWQDRLQQW-GYQP-LFISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred CCCCEEEEEEchhcCChHH--HHHHHHHHHhc-CCeE-EEEEcCCCCCHHHHhhhhccce
Confidence 5789999999999964321 12223334466 7789 9999999999999998887543
No 166
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.19 E-value=3.6e-06 Score=54.74 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=41.9
Q ss_pred CCCeEEEEEecCCCCCCCCCC--HHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVD--FNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|+++++||+|+.+..... ........... ...+ +++||+++.|++++|..|.+.+.
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~-~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDEV-ILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCce-EEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999986432211 11233333433 5688 99999999999999999887654
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.16 E-value=3.6e-06 Score=62.03 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=41.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.+.|+++|+||+|+.+..... ... ...+ +++||+++.|+++++..+.+.+..
T Consensus 320 ~~~piiiV~NK~DL~~~~~~~--------~~~-~~~~-i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 320 KDKPVIVVLNKADLTGEIDLE--------EEN-GKPV-IRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CCCCcEEEEEhhhccccchhh--------hcc-CCce-EEEEeeCCCCHHHHHHHHHHHHhh
Confidence 478999999999996433211 233 5678 999999999999999999988754
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.15 E-value=4.3e-06 Score=61.94 Aligned_cols=56 Identities=16% Similarity=0.032 Sum_probs=40.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.... .+. ..+.... .... +++||++|.|++++|+.+++.+++
T Consensus 145 ~~~piilV~NK~Dl~~~~---~~~-~~~~~~g-~~~~-~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 145 SGKPVILAANKVDDERGE---ADA-AALWSLG-LGEP-HPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred cCCCEEEEEECccCCccc---hhh-HHHHhcC-CCCe-EEEEcCCCCCcHHHHHHHHhhccc
Confidence 578999999999986421 121 2222221 2256 889999999999999999988865
No 169
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.14 E-value=7.4e-06 Score=59.46 Aligned_cols=60 Identities=23% Similarity=0.147 Sum_probs=43.9
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcC-CcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVP-EIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+.|+++|+||+|+.....+ .+....+.+..+ ...+ +.+||+++.|+++++..|.+.+.+.
T Consensus 275 ~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~V-i~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 275 EKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPV-YLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCE-EEEECCCCcCHHHHHHHHHHHhhhC
Confidence 5899999999998643322 223334444431 2368 9999999999999999999888764
No 170
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.14 E-value=1.2e-07 Score=60.70 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCL 65 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 65 (106)
.+.++|+++|.||+|+..+..+.. ....+.+.. +.++ +.+||+++.|+++++..+
T Consensus 102 ~e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~L-g~pv-i~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 102 LELGIPVVVVLNKMDEAERKGIEI-DAEKLSERL-GVPV-IPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHTTSSEEEEEETHHHHHHTTEEE--HHHHHHHH-TS-E-EEEBTTTTBTHHHHHHHH
T ss_pred HHcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHh-CCCE-EEEEeCCCcCHHHHHhhC
Confidence 446899999999999865444332 245566778 8899 999999999999998764
No 171
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.13 E-value=6.9e-06 Score=52.10 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=41.4
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
...++|+|+|.||+|+.+...+ ......+.... +..+ +.+||+++.|+++++..+.+...
T Consensus 26 ~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~-~~~i-i~vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 26 KEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSY-PTIP-FKISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred hcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhC-CceE-EEEeccCCcChhhHHHHHHHHhH
Confidence 3467999999999998542211 11112233334 5667 89999999999999998876543
No 172
>KOG3883|consensus
Probab=98.13 E-value=7.6e-06 Score=52.36 Aligned_cols=64 Identities=30% Similarity=0.323 Sum_probs=56.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
...+|+++.+||+|+.+.+.+....+..|++.. .+.+ ++++|.+...+-+.|..++..+..-..
T Consensus 116 KKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rE-kvkl-~eVta~dR~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 116 KKEVPIVVLANKRDRAEPREVDMDVAQIWAKRE-KVKL-WEVTAMDRPSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred cccccEEEEechhhcccchhcCHHHHHHHHhhh-heeE-EEEEeccchhhhhHHHHHHHhccCCcc
Confidence 357999999999999888889999999999998 8999 999999999999999999877655544
No 173
>PRK00098 GTPase RsgA; Reviewed
Probab=98.13 E-value=3.8e-06 Score=58.89 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=41.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
..++|+++|+||+||.+... .........+.. ++++ +.+||+++.|+++++..+..
T Consensus 109 ~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~-g~~v-~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 109 ANGIKPIIVLNKIDLLDDLE-EARELLALYRAI-GYDV-LELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred HCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHC-CCeE-EEEeCCCCccHHHHHhhccC
Confidence 35789999999999963221 112233445556 7789 99999999999999987753
No 174
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.10 E-value=7.5e-06 Score=62.32 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=42.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc---ceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI---HYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.... .......+.+.+ +. .+ +.+||++|.|++++|+.|++.++.
T Consensus 121 ~~ipiIiViNKiDl~~~~--~~~~~~el~~~l-g~~~~~v-i~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 121 NDLEIIPVINKIDLPSAD--PERVKKEIEEVI-GLDASEA-ILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred cCCCEEEEEECcCCCccC--HHHHHHHHHHHh-CCCcceE-EEeeccCCCCHHHHHHHHHHhCCC
Confidence 578999999999986422 122233444444 33 48 999999999999999999887653
No 175
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.09 E-value=1.5e-05 Score=57.29 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHH----HhhhcCCc---ceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEE----MGEYVPEI---HYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+.|+++|+||+||.++ .+..+.... +.+.. ++ .+ +.+||+++.|++++|..+.+.
T Consensus 90 ~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~~-g~~~~~i-~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKEL-GLKPVDI-ILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHHc-CCCcCcE-EEecCCCCCCHHHHHHHHHHH
Confidence 6799999999999653 233333333 34455 54 48 999999999999999988654
No 176
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.07 E-value=8.7e-06 Score=53.80 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=42.8
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHhhhc-CCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 15 RVWSNKCDLESEREVDFNEAEEMGEYV-PEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 15 ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
++|.||.||.+......+.+.+-+++. |..++ +++|+++|+|+++++.++...
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~~np~~~i-i~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPI-IFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCE-EEEeCCCCcCHHHHHHHHHhh
Confidence 689999999876666667776666553 57899 999999999999998888654
No 177
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.05 E-value=6.4e-06 Score=53.74 Aligned_cols=60 Identities=18% Similarity=0.061 Sum_probs=39.4
Q ss_pred CCCeEEEEEecCCCCCCCC--CCHHHHHHHhhhc--C---CcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESERE--VDFNEAEEMGEYV--P---EIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~--~---~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|+++|.||+|+...+. +..+....+.+.. + ..++ +.+||++|.|+++|++.+.+.++
T Consensus 121 ~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v-i~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 121 LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPV-IPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEE-EEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceE-EEEecCCCCCHHHHHHHHHHhCc
Confidence 5789999999999862110 0011111232222 1 2578 99999999999999999988765
No 178
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.02 E-value=9e-06 Score=56.71 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=40.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++|+||+||.+... ......+.... ++++ +.+||+++.|+++++..+..
T Consensus 108 ~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~-g~~v-~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 108 AGIEPVIVLTKADLLDDEE--EELELVEALAL-GYPV-LAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred cCCCEEEEEEHHHCCChHH--HHHHHHHHHhC-CCeE-EEEECCCCccHHHHHhhhcc
Confidence 5789999999999964311 11223334446 7889 99999999999999887764
No 179
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.00 E-value=2.6e-05 Score=49.33 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=41.3
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
+.|+|-|.||+|+... ....+.+..+.+.. |. .. |++|+.+++||++|.+.|-
T Consensus 89 ~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~a-G~~~i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 89 NKPVIGVITKIDLPSD-DANIERAKKWLKNA-GVKEI-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCCEEEEEECccCccc-hhhHHHHHHHHHHc-CCCCe-EEEECCCCcCHHHHHHHHh
Confidence 5799999999999732 22345666777776 54 57 9999999999999988763
No 180
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.00 E-value=1.8e-05 Score=56.74 Aligned_cols=51 Identities=20% Similarity=0.086 Sum_probs=37.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.+.|+++|+||+|+.+... ..... .. ...+ +.+||+++.|+++++..|.+.
T Consensus 300 ~~~piIlV~NK~Dl~~~~~-----v~~~~-~~-~~~~-i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 300 EDIPQLLVYNKIDLLDEPR-----IERLE-EG-YPEA-VFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCEEEEEEeecCCChHh-----HHHHH-hC-CCCE-EEEEccCCCCHHHHHHHHHhh
Confidence 4789999999999864221 11111 12 3468 999999999999999988754
No 181
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.99 E-value=2.2e-05 Score=57.93 Aligned_cols=56 Identities=20% Similarity=0.092 Sum_probs=43.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+... . ...+.+.+ +.++ +++||++ .||+++|..+.+.+.+...
T Consensus 309 ~~~piIlV~NK~Dl~~~---~---~~~~~~~~-~~~~-~~vSak~-~gI~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 309 SKKPFILVLNKIDLKIN---S---LEFFVSSK-VLNS-SNLSAKQ-LKIKALVDLLTQKINAFYS 364 (442)
T ss_pred CCCCEEEEEECccCCCc---c---hhhhhhhc-CCce-EEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 47899999999998642 1 12344555 6788 9999998 6999999999998876543
No 182
>PRK11058 GTPase HflX; Provisional
Probab=97.97 E-value=1.9e-05 Score=57.99 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=40.2
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcc-eEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIH-YVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
..++|+++|+||+|+.+... ... .. ... +.+ + +.+||++|.|+++++..+.+.+...
T Consensus 307 ~~~~pvIiV~NKiDL~~~~~---~~~-~~-~~~-~~~~~-v~ISAktG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 307 AHEIPTLLVMNKIDMLDDFE---PRI-DR-DEE-NKPIR-VWLSAQTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred cCCCCEEEEEEcccCCCchh---HHH-HH-Hhc-CCCce-EEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 35799999999999864211 111 11 112 333 6 8899999999999999999888543
No 183
>COG1159 Era GTPase [General function prediction only]
Probab=97.96 E-value=5.7e-06 Score=57.70 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=45.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.+.|++++.||+|..............+....++..+ +.+||+.|.|++.|...+...+++..
T Consensus 113 ~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~i-vpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 113 TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEI-VPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceE-EEeeccccCCHHHHHHHHHHhCCCCC
Confidence 3579999999999865443212333334444445678 99999999999999998888776553
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.96 E-value=2.1e-05 Score=60.94 Aligned_cols=60 Identities=18% Similarity=0.054 Sum_probs=42.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHH-HHhh---hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAE-EMGE---YVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~-~~~~---~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+||.+... .+... .+.. ..+..++ +.+||++|.||+++|..+.+.+...
T Consensus 560 ~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~i-i~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 560 AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARR-VNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999964321 11111 1111 1224577 8999999999999999998877654
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.95 E-value=2.7e-05 Score=59.43 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=42.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc---ceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI---HYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+.... .......+.... +. .+ +.+||++|.|++++++.|.+.++.-
T Consensus 125 ~~lpiIvViNKiDl~~a~--~~~v~~ei~~~l-g~~~~~v-i~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 125 NDLEIIPVLNKIDLPAAD--PERVKQEIEDVI-GIDASDA-VLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CCCCEEEEEECCCCCccc--HHHHHHHHHHHh-CCCcceE-EEEecCCCCCHHHHHHHHHHhCccc
Confidence 578999999999986422 122223343434 33 48 9999999999999999998877643
No 186
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.93 E-value=2.2e-05 Score=49.85 Aligned_cols=56 Identities=13% Similarity=-0.006 Sum_probs=37.6
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+.|+|+|.||+|+.++.. .......+.+.+ .... +.+||+.+.|+++++..+....
T Consensus 39 ~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~-~~~~-~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 39 HKHLIFVLNKCDLVPTWV-TARWVKILSKEY-PTIA-FHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred CCCEEEEEEchhcCCHHH-HHHHHHHHhcCC-cEEE-EEeeccccccHHHHHHHHHHHH
Confidence 489999999999864321 111222333333 3335 7899999999999988886543
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.91 E-value=2.8e-05 Score=56.77 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=40.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHh---hhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMG---EYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.+.|+++|+||+|+.+... ..+...... ...+..++ +++||+++.|++++|..+.+...+
T Consensus 283 ~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i-~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 283 AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPI-VFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCE-EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999863221 111111111 12225689 999999999999999988765543
No 188
>PRK13796 GTPase YqeH; Provisional
Probab=97.88 E-value=5.5e-05 Score=54.50 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHH----HhhhcCCc---ceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEE----MGEYVPEI---HYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+.|+++|+||+||.+. ....+.... +.+.. ++ .+ +.+||+++.|+++++..+.+.
T Consensus 96 ~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~-g~~~~~v-~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 96 NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL-GLRPVDV-VLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc-CCCcCcE-EEEECCCCCCHHHHHHHHHHh
Confidence 6799999999999643 222333333 34444 44 57 999999999999999998654
No 189
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.87 E-value=2e-05 Score=49.23 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=39.0
Q ss_pred CCCeEEEEEecCCCCCCCCCC--HHHHHHHhh-hcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVD--FNEAEEMGE-YVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~--~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.+.|+++|+||+|+....... ........+ .....++ +++||+++.++.++++.|.+.
T Consensus 109 ~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 109 LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI-ILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce-EEEecCCCCCHHHHHHHHHHh
Confidence 357999999999985332111 111222222 1224678 999999999999999998764
No 190
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.86 E-value=2.6e-05 Score=51.00 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=32.9
Q ss_pred CCCeEEEEEecCCCCCCCC-CCHHHHHHHh-------hhcCCcceEEEcccCCCCCHHHH
Q psy5780 10 SAHDSRVWSNKCDLESERE-VDFNEAEEMG-------EYVPEIHYVMETSAKDSTNVEEA 61 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l 61 (106)
.++|+++|+||+|+..... ...+....+. ... ++++ +.+||++|.|+.++
T Consensus 116 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i-v~~Sa~~g~~~~~~ 173 (194)
T cd01891 116 LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL-DFPV-LYASAKNGWASLNL 173 (194)
T ss_pred cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC-ccCE-EEeehhcccccccc
Confidence 5789999999999964321 1122233333 123 5689 99999999887444
No 191
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.86 E-value=4.6e-05 Score=58.02 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=38.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-------hcC-CcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-------YVP-EIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++++||+|+... ..+....... .++ ...+ +++||++|.|++++|..+..
T Consensus 186 ~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~-v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 186 ANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIF-VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceE-EEEECCCCCChHHHHHhhhh
Confidence 57999999999998642 1222222222 221 2468 99999999999999999864
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.85 E-value=3.7e-05 Score=59.68 Aligned_cols=59 Identities=17% Similarity=0.030 Sum_probs=42.3
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
...++|+|+|+||+|+.... .....+.... .... +++||++|.||+++|.++++.+...
T Consensus 380 r~~~~pvIlV~NK~D~~~~~----~~~~~~~~lg-~~~~-~~iSA~~g~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 380 RRAGKPVVLAVNKIDDQASE----YDAAEFWKLG-LGEP-YPISAMHGRGVGDLLDEALDSLKVA 438 (712)
T ss_pred HhcCCCEEEEEECcccccch----hhHHHHHHcC-CCCe-EEEECCCCCCchHHHHHHHHhcccc
Confidence 34689999999999986421 1222222222 2356 8999999999999999999888653
No 193
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.85 E-value=4.7e-05 Score=49.04 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=40.3
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
+.|+++|.||+|+.+... ......+.+.. +..+ +.+||+++.|++++...+.+.++.
T Consensus 46 ~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~-~~~v-i~iSa~~~~gi~~L~~~l~~~l~~ 102 (171)
T cd01856 46 NKPRIIVLNKADLADPKK--TKKWLKYFESK-GEKV-LFVNAKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred CCCEEEEEehhhcCChHH--HHHHHHHHHhc-CCeE-EEEECCCcccHHHHHHHHHHHHHH
Confidence 579999999999863211 11122233333 4567 999999999999999999887653
No 194
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.84 E-value=3.1e-05 Score=58.86 Aligned_cols=62 Identities=21% Similarity=0.090 Sum_probs=43.4
Q ss_pred CCCe-EEEEEecCCCCCCCCC--CHHHHHHHhhhc---CCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHD-SRVWSNKCDLESEREV--DFNEAEEMGEYV---PEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++| +++|+||+|+.+...+ ..++...+...+ .+.++ +++||++|.|+++++..+...+...
T Consensus 101 lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~i-i~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 101 LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKI-FKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcE-EEEeCCCCCCchhHHHHHHHHHHhC
Confidence 4678 9999999999753321 112333444333 14679 9999999999999999887766544
No 195
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.84 E-value=4.2e-05 Score=53.54 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=39.2
Q ss_pred CeEEEEEecCCCCCCCCCCHHHHHHHh-hhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREVDFNEAEEMG-EYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
..-++|.||+||.+......+...... +..+...+ |.+||++++|+++|..+|.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I-~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEI-ILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcE-EEEECCCCCCHHHHHHHHHHh
Confidence 455899999999753222223333333 33457789 999999999999999998763
No 196
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.82 E-value=1.5e-05 Score=62.23 Aligned_cols=59 Identities=7% Similarity=0.074 Sum_probs=47.2
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.+.++|+++|+||+|+.+.+.+. .....+.+.. +.++ +.+||++++|++++++.+.+..
T Consensus 109 ~e~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~L-G~pV-vpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 109 LELGIPCIVALNMLDIAEKQNIR-IDIDALSARL-GCPV-IPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HHcCCCEEEEEEchhhhhccCcH-HHHHHHHHHh-CCCE-EEEEeecCCCHHHHHHHHHHhh
Confidence 34579999999999987554443 3456677778 8899 9999999999999998887654
No 197
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.81 E-value=5.9e-05 Score=55.11 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.+.|+++|+||+|+.+. ......+. .. +. .+ +++||++|.|++++|+.+...
T Consensus 108 ~~~piilv~NK~D~~~~----~~~~~~~~-~l-g~~~~-~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 108 SNKPVILVVNKVDGPDE----EADAYEFY-SL-GLGEP-YPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred cCCcEEEEEECccCccc----hhhHHHHH-hc-CCCCC-EEEEeeCCCCHHHHHHHHHhh
Confidence 47899999999997531 12222332 34 33 58 999999999999999999873
No 198
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.76 E-value=4.4e-05 Score=55.77 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=39.3
Q ss_pred eEEEEEecCCCCCCCCCC--HHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 13 DSRVWSNKCDLESEREVD--FNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
|+++|+||+|+.+..... .+....+.+.. ...++ +++||+++.|++++++.|...++
T Consensus 141 ~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~i-i~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 141 NIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPI-IPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred cEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeE-EEEECCCCcCHHHHHHHHHHhCC
Confidence 689999999986532211 12233333221 14678 99999999999999999987664
No 199
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.76 E-value=8.4e-05 Score=54.16 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=42.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+.|+++|+||+|+.+.... ...+ ...+...+ +++||++|.|++++++.+.+.+...
T Consensus 106 ~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~-~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 106 SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEP-IPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred hCCCEEEEEECccCCccccc----HHHH-HhcCCCCe-EEEeCCcCCChHHHHHHHHHhcCcc
Confidence 57899999999998653321 1222 23413378 9999999999999999998877553
No 200
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=6.5e-05 Score=55.73 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=44.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc---ceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI---HYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.+..+|.|.||+||+... ......+...-. |+ .. +.+|||+|.||+++++.+++.++-=.
T Consensus 127 ~~LeIiPViNKIDLP~Ad--pervk~eIe~~i-Gid~~da-v~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 127 NNLEIIPVLNKIDLPAAD--PERVKQEIEDII-GIDASDA-VLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred cCcEEEEeeecccCCCCC--HHHHHHHHHHHh-CCCcchh-eeEecccCCCHHHHHHHHHhhCCCCC
Confidence 567899999999998533 222333444444 43 46 88999999999999999998886443
No 201
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00017 Score=44.76 Aligned_cols=53 Identities=25% Similarity=0.178 Sum_probs=40.8
Q ss_pred CeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.|+|-|.+|+||+++..+ +....|..+.+.-++ |++|+.+..||++++..|..
T Consensus 91 k~vIgvVTK~DLaed~dI--~~~~~~L~eaGa~~I-F~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 91 KKVIGVVTKADLAEDADI--SLVKRWLREAGAEPI-FETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cceEEEEecccccchHhH--HHHHHHHHHcCCcce-EEEeccCcccHHHHHHHHHh
Confidence 459999999999865443 345666666634467 99999999999999988864
No 202
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.68 E-value=0.00016 Score=50.12 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=41.3
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
+.|+|+|.||+||.+... ......+.+.. +..+ +.+||+++.|++++...+.+.+.+..
T Consensus 48 ~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~-~~~v-i~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 48 NKPRLIVLNKADLADPAV--TKQWLKYFEEK-GIKA-LAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred CCCEEEEEEccccCCHHH--HHHHHHHHHHc-CCeE-EEEECCCcccHHHHHHHHHHHHHHhh
Confidence 579999999999853211 11112222334 5678 99999999999999988887776543
No 203
>KOG0462|consensus
Probab=97.67 E-value=8.8e-05 Score=55.75 Aligned_cols=60 Identities=23% Similarity=0.169 Sum_probs=42.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+..+|.|.||+|++..+. ........+.+ +..+. +-+|||+|.|++++++++++.++-=
T Consensus 176 ~~L~iIpVlNKIDlp~adp--e~V~~q~~~lF~~~~~~~-i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 176 AGLAIIPVLNKIDLPSADP--ERVENQLFELFDIPPAEV-IYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred cCCeEEEeeeccCCCCCCH--HHHHHHHHHHhcCCccce-EEEEeccCccHHHHHHHHHhhCCCC
Confidence 5678999999999986442 11122222222 24578 9999999999999999998887543
No 204
>COG2262 HflX GTPases [General function prediction only]
Probab=97.65 E-value=9.5e-05 Score=53.67 Aligned_cols=60 Identities=17% Similarity=-0.044 Sum_probs=42.3
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
+...++|+|+|.||+|+..+.. ........ .-.. +.+||+++.|++.++..|.+.+....
T Consensus 300 l~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~-~~~~-v~iSA~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 300 IGADEIPIILVLNKIDLLEDEE-----ILAELERG-SPNP-VFISAKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred cCCCCCCEEEEEecccccCchh-----hhhhhhhc-CCCe-EEEEeccCcCHHHHHHHHHHHhhhcc
Confidence 3446699999999999754332 11122222 1146 88999999999999999998887553
No 205
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.65 E-value=2.9e-05 Score=54.44 Aligned_cols=60 Identities=23% Similarity=0.189 Sum_probs=45.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
..++..++|.||+||.++......+.......+ ++.+ +.+|++++.+++++...+...+.
T Consensus 108 ~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~-gy~v-~~~s~~~~~~~~~l~~~l~~~~s 167 (301)
T COG1162 108 AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDI-GYPV-LFVSAKNGDGLEELAELLAGKIT 167 (301)
T ss_pred HcCCcEEEEEEccccCcchHHHHHHHHHHHHhC-CeeE-EEecCcCcccHHHHHHHhcCCeE
Confidence 356788888999999865432223455567778 8999 99999999999998887765543
No 206
>KOG1707|consensus
Probab=97.65 E-value=2.4e-05 Score=58.87 Aligned_cols=62 Identities=21% Similarity=0.148 Sum_probs=44.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHH-HHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNE-AEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+||||||+|+.+...-+.+. ....+..+..+ .. +++||++..++.++|+...+.+.--
T Consensus 114 ~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtc-iecSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 114 HETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETC-IECSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred ccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHH-HhhhhhhhhhhHhhhhhhhheeecc
Confidence 579999999999987544332232 44444444222 46 9999999999999999877666544
No 207
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.65 E-value=0.00017 Score=56.27 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=39.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHH-HH------hhhcC-CcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAE-EM------GEYVP-EIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~-~~------~~~~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+|+|+||+|+.... ..... .+ ...++ ..++ +++||++|.|++++|..+....
T Consensus 346 ~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpv-v~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 346 ANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPM-IPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred cCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceE-EEEECCCCCCHHHHHHhhhhhh
Confidence 579999999999986422 11111 11 12231 2578 9999999999999999987653
No 208
>PRK01889 GTPase RsgA; Reviewed
Probab=97.64 E-value=3.1e-05 Score=55.60 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
..+++.++|.||+||.++. .+....+.....++++ +.+|++++.|+++|...+.
T Consensus 140 ~~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~V-i~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 140 ESGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPV-LAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred HcCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcE-EEEECCCCccHHHHHHHhh
Confidence 3678889999999997531 1122222222226788 9999999999999887764
No 209
>KOG0096|consensus
Probab=97.64 E-value=1.9e-05 Score=51.98 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=45.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++|++++|||.|..... +. .....+-... .+.+ +++||+++.|.+.-|.++++.+....
T Consensus 113 ~NiPiv~cGNKvDi~~r~-~k-~k~v~~~rkk-nl~y-~~iSaksn~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 113 ENIPIVLCGNKVDIKARK-VK-AKPVSFHRKK-NLQY-YEISAKSNYNFERPFLWLARKLTGDP 172 (216)
T ss_pred cCCCeeeeccceeccccc-cc-cccceeeecc-ccee-EEeecccccccccchHHHhhhhcCCC
Confidence 579999999999986533 11 1122333444 6789 99999999999999999999886554
No 210
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.61 E-value=0.00011 Score=56.31 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=39.5
Q ss_pred CCCe-EEEEEecCCCCCCCCCC--HHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHD-SRVWSNKCDLESEREVD--FNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++| +|+|+||+|+.+...+. .++...+.... ...++ +.+||++|.|+++++..|....
T Consensus 102 lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~i-i~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 102 TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKL-FVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEeCCCCCCCHHHHHHHHHhh
Confidence 3566 47999999986432211 12233343333 12678 9999999999999999887643
No 211
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.61 E-value=0.00017 Score=56.66 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHH-H------Hhhhc-CCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAE-E------MGEYV-PEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~-~------~~~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+|+++||+|+.... ..... . +.+.+ +.+++ +++||++|.||+++|+.|...
T Consensus 388 ~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~-vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 388 AGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIF-VPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred cCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceE-EEEeCCCCCCchHHHHhhhhh
Confidence 579999999999996421 11111 1 12223 12679 999999999999999998753
No 212
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.57 E-value=0.00011 Score=53.64 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=38.6
Q ss_pred eEEEEEecCCCCCCCCC--CHHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 13 DSRVWSNKCDLESEREV--DFNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
|+++|+||+|+.+.... ..++...+.... ...++ +++||+++.|++++++.|...++
T Consensus 136 ~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~i-i~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 136 NIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPI-IPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred eEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeE-EEEECCCCCChHHHHHHHHHhCC
Confidence 58999999998643211 112222232221 14578 99999999999999999987664
No 213
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.57 E-value=5.6e-05 Score=48.83 Aligned_cols=49 Identities=10% Similarity=0.025 Sum_probs=32.1
Q ss_pred CCCeEEEEEecCCCCCCCCC--CHHHHHHHhhhc-CCcceEEEcccCCCCCHH
Q psy5780 10 SAHDSRVWSNKCDLESEREV--DFNEAEEMGEYV-PEIHYVMETSAKDSTNVE 59 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~ 59 (106)
.++|+++|+||+|+.+.... ..+......... ....+ |++||++|+|++
T Consensus 128 ~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v-~~~Sa~~g~gi~ 179 (179)
T TIGR03598 128 RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV-QLFSSLKKTGID 179 (179)
T ss_pred cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce-EEEECCCCCCCC
Confidence 47899999999998642211 122233344443 12478 999999999973
No 214
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.56 E-value=0.00045 Score=45.62 Aligned_cols=64 Identities=28% Similarity=0.197 Sum_probs=43.9
Q ss_pred CCCeEEEEEecCCCCCCC------------CCCHHHHHHHhhhc--CCcceEEEcccC--CCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESER------------EVDFNEAEEMGEYV--PEIHYVMETSAK--DSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~Sa~--~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++|+++|+||+||.... .............. ....+ +++|++ ++.+|+++|..+.+.+....
T Consensus 110 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 110 DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL-LETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce-eEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 469999999999997653 22222222211111 02348 999999 99999999999999887654
Q ss_pred c
Q psy5780 74 S 74 (106)
Q Consensus 74 ~ 74 (106)
.
T Consensus 189 ~ 189 (219)
T COG1100 189 E 189 (219)
T ss_pred h
Confidence 3
No 215
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.52 E-value=0.00035 Score=48.73 Aligned_cols=58 Identities=21% Similarity=0.144 Sum_probs=41.4
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+.|+++|.||+||.+... ......+.+.. +..+ +.+||+++.|++++...+...+.+.
T Consensus 51 ~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~-~~~v-i~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 51 NKPRLLILNKSDLADPEV--TKKWIEYFEEQ-GIKA-LAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CCCEEEEEEchhcCCHHH--HHHHHHHHHHc-CCeE-EEEECCCcccHHHHHHHHHHHHHHH
Confidence 679999999999853211 11222223344 5678 8999999999999999888777655
No 216
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.50 E-value=0.00025 Score=50.64 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=41.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEE-cccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVME-TSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.+.|.+||.||+|+.............+.+.. ++.. +. +||.+++|++++...+.+.+.+..
T Consensus 274 ~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~-~~~~-~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 274 AEKPRIVVLNKIDLPLDEEELEELKKALAEAL-GWEV-FYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ccCceEEEEeccCCCcCHHHHHHHHHHHHHhc-CCCc-ceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 35789999999996533221222223333333 3332 22 999999999999999988887774
No 217
>PRK13768 GTPase; Provisional
Probab=97.49 E-value=0.00031 Score=48.24 Aligned_cols=58 Identities=21% Similarity=0.154 Sum_probs=40.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHH----------------------------Hhhhc-CCcceEEEcccCCCCCHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEE----------------------------MGEYV-PEIHYVMETSAKDSTNVEE 60 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~----------------------------~~~~~-~~~~~~~~~Sa~~~~~v~~ 60 (106)
.++|+++|.||+|+.+.... +.... ..+.. ....+ +.+|+++++|+++
T Consensus 161 ~~~~~i~v~nK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~v-i~iSa~~~~gl~~ 237 (253)
T PRK13768 161 LGLPQIPVLNKADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRV-IPVSAKTGEGFDE 237 (253)
T ss_pred cCCCEEEEEEhHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcE-EEEECCCCcCHHH
Confidence 57899999999998654321 11111 11122 13578 9999999999999
Q ss_pred HHHHHHHHHH
Q psy5780 61 AFYCLANELK 70 (106)
Q Consensus 61 lf~~l~~~i~ 70 (106)
+...|.+.+.
T Consensus 238 L~~~I~~~l~ 247 (253)
T PRK13768 238 LYAAIQEVFC 247 (253)
T ss_pred HHHHHHHHcC
Confidence 9999987764
No 218
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.48 E-value=0.00044 Score=52.82 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.5
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++ +.+||++|+|++++...+....
T Consensus 191 v~i-VpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 191 VAI-IPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred ceE-EEeecCCCCChhHHHHHHHHHH
Confidence 578 9999999999999998886543
No 219
>KOG1489|consensus
Probab=97.48 E-value=0.00023 Score=50.42 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=39.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.+-|.++|.||+|+++.+ ......+++...+..+ +.+||+++++++++...|.+
T Consensus 311 ~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V-~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 311 ADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHV-VPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred ccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcE-EEeeeccccchHHHHHHHhh
Confidence 457899999999986322 1223556666534458 99999999999999877654
No 220
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.45 E-value=0.00032 Score=47.36 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=36.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCC--HHHHHHHhhh------------------------c-CCcceEEEcccCCCCCHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVD--FNEAEEMGEY------------------------V-PEIHYVMETSAKDSTNVEEA 61 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~--~~~~~~~~~~------------------------~-~~~~~~~~~Sa~~~~~v~~l 61 (106)
..++|+++|.||+|+.+..... ......+... + ...++ |.+||.+|.|++++
T Consensus 136 ~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi-~~vSavtg~Gi~~L 214 (224)
T cd04165 136 ALNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPI-FQVSNVTGEGLDLL 214 (224)
T ss_pred HcCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcE-EEeeCCCccCHHHH
Confidence 3578999999999986432211 1111222221 1 02378 99999999999988
Q ss_pred HHHHH
Q psy5780 62 FYCLA 66 (106)
Q Consensus 62 f~~l~ 66 (106)
...|.
T Consensus 215 ~~~L~ 219 (224)
T cd04165 215 HAFLN 219 (224)
T ss_pred HHHHH
Confidence 76653
No 221
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.42 E-value=0.00033 Score=46.57 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=32.4
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHH----HHHHhhhcCCcceEEEcccCCCCC
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNE----AEEMGEYVPEIHYVMETSAKDSTN 57 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~ 57 (106)
..++|++|||||+||.+.+.+.... ...++++. +++. ++.+++....
T Consensus 127 ~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~-~~~~-i~~~c~~~~~ 177 (202)
T cd04102 127 GNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQG-NAEE-INLNCTNGRL 177 (202)
T ss_pred CCCceEEEEEECccchhhcccchHHHhhHhhhHHHhc-CCce-EEEecCCccc
Confidence 3579999999999997655444432 23456667 7887 8777765443
No 222
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.39 E-value=0.00026 Score=44.15 Aligned_cols=44 Identities=20% Similarity=0.058 Sum_probs=30.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCC
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTN 57 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 57 (106)
.+.|+++|.||+|+.++.. ......+.+.. +..+ +.+||+++.+
T Consensus 41 ~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~-~~~i-i~iSa~~~~~ 84 (141)
T cd01857 41 PRKKNILLLNKADLLTEEQ--RKAWAEYFKKE-GIVV-VFFSALKENA 84 (141)
T ss_pred CCCcEEEEEechhcCCHHH--HHHHHHHHHhc-CCeE-EEEEecCCCc
Confidence 4789999999999864321 12233445555 6778 9999998764
No 223
>PRK09866 hypothetical protein; Provisional
Probab=97.38 E-value=0.00073 Score=52.13 Aligned_cols=55 Identities=18% Similarity=0.051 Sum_probs=37.6
Q ss_pred CeEEEEEecCCCCCCCCCCHHHHHHHhh----h--cCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREVDFNEAEEMGE----Y--VPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~~~~~~~~~----~--~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.|+++|.||+|+.+......+....+.. . .+...+ |.+||+.|.|+++++..+.+
T Consensus 290 ~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eI-fPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 290 VPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQI-FPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceE-EEEeCCCCCCHHHHHHHHHh
Confidence 5999999999986432212333333321 1 113468 99999999999999988865
No 224
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.36 E-value=0.00077 Score=49.61 Aligned_cols=56 Identities=16% Similarity=-0.029 Sum_probs=42.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
..+.|++||.||+|-.. ......+|.... .... +.+||..|.|+.+|.+++.+.++
T Consensus 110 ~~~kpviLvvNK~D~~~----~e~~~~efyslG-~g~~-~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 110 RSKKPVILVVNKIDNLK----AEELAYEFYSLG-FGEP-VPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred hcCCCEEEEEEcccCch----hhhhHHHHHhcC-CCCc-eEeehhhccCHHHHHHHHHhhcC
Confidence 35699999999999542 123344455444 5678 99999999999999999999885
No 225
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00089 Score=50.06 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=39.3
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHH------hhhcC-CcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEM------GEYVP-EIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
...++|+++..||+|.++... .....++ .+.|+ ...+ +.+||++|+|+++|+..++-.
T Consensus 104 k~a~vP~iVAiNKiDk~~~np--~~v~~el~~~gl~~E~~gg~v~~-VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 104 KAAGVPIVVAINKIDKPEANP--DKVKQELQEYGLVPEEWGGDVIF-VPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred HHCCCCEEEEEecccCCCCCH--HHHHHHHHHcCCCHhhcCCceEE-EEeeccCCCCHHHHHHHHHHH
Confidence 346899999999999874321 1111222 22341 2467 999999999999999877643
No 226
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.30 E-value=0.00029 Score=49.45 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCeEEEEEecCCCCCCCCCCH--H----HHHHHhhh---cCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDF--N----EAEEMGEY---VPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~--~----~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
++|.++|.||+|+........ . ....+.+. + ..++ +.+||+++.|+++++.++.+.+.
T Consensus 172 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~v-~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 172 EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGW-RPPV-LTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCC-CCCE-EEEEccCCCCHHHHHHHHHHHHH
Confidence 567899999999864321100 0 00111111 2 2458 99999999999999999987644
No 227
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.30 E-value=0.00081 Score=49.64 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=42.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
..+.|+++|.||.||........ . +..++.++ +.+|+++++|++.+...|.+.+...
T Consensus 322 ~~~~~~i~v~NK~DL~~~~~~~~-----~-~~~~~~~~-i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 322 PKKKPIIVVLNKADLVSKIELES-----E-KLANGDAI-ISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCCCEEEEEechhcccccccch-----h-hccCCCce-EEEEecCccCHHHHHHHHHHHHhhc
Confidence 35689999999999976443111 1 22224568 9999999999999999888777665
No 228
>KOG0075|consensus
Probab=97.29 E-value=0.0002 Score=45.68 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=39.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc----CCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV----PEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++.|||.|++. .+.......-.... ..+.. |.+|+++..|++.+..+|.+.-
T Consensus 121 ~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC-~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 121 TGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCC-FSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred cCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEE-EEEEEcCCccHHHHHHHHHHHh
Confidence 4689999999999874 33333322221111 13467 9999999999999999998754
No 229
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.27 E-value=0.00051 Score=51.03 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=37.6
Q ss_pred eEEEEEecCCCCCCCCCC--HHHHHHHhhh--cCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 13 DSRVWSNKCDLESEREVD--FNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
++|+|.||+|+.+..... .++...+... ....++ +.+||++|.|++.|++.|.+.++
T Consensus 173 ~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~i-ipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 173 HIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPI-IPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred cEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeE-EEeeCCCCCCHHHHHHHHHhhCC
Confidence 578899999986432211 1112222221 125688 99999999999999988876554
No 230
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.25 E-value=0.00043 Score=50.74 Aligned_cols=50 Identities=22% Similarity=0.098 Sum_probs=33.2
Q ss_pred CeEEEEEecCCCCCCCCC----CHHHHHHHhhhcC----CcceEEEcccCCCCCHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREV----DFNEAEEMGEYVP----EIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~lf 62 (106)
.++++|+||+|+.+.... ...+...+.+..+ .+++ +++||++|.|+++++
T Consensus 142 ~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~-i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 142 NQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPF-IPISAWNGDNVIKKS 199 (426)
T ss_pred CeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceE-EEeeccccccccccc
Confidence 478899999999642111 1223444555441 2578 999999999998754
No 231
>KOG0070|consensus
Probab=97.22 E-value=0.00085 Score=43.88 Aligned_cols=59 Identities=25% Similarity=0.224 Sum_probs=42.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++.+||.|++.. .+..+...... .. .+.+ ..++|.+|.|+.+.++++...+..+
T Consensus 117 ~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~-~w~i-q~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 117 RNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSR-NWHI-QSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred CCceEEEEechhhcccc--CCHHHHHhHhhhhccCCC-CcEE-eeccccccccHHHHHHHHHHHHhcc
Confidence 57999999999999753 33333332222 12 3456 7899999999999999999887653
No 232
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.22 E-value=0.0015 Score=48.14 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=42.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHH----HhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEE----MGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+.+.++++|.||.|+.+......+.... .....++.+. +.+||+++.++.++|..+.+.....
T Consensus 287 ~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i-~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 287 EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPI-VFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeE-EEEEecCCCChHHHHHHHHHHHHHh
Confidence 3578999999999987643223333221 1222235678 9999999999999998886654443
No 233
>KOG0073|consensus
Probab=97.21 E-value=0.0025 Score=41.28 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=44.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHH------HHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEA------EEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+.|++++.||.|+.. .+..+.. ..+++.. .+++ +.+||.+|+++.+-|+++...+.++
T Consensus 116 aG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~-~~~l-~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 116 AGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSH-HWRL-VKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred cCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhcccc-CceE-EEEeccccccHHHHHHHHHHHHHHH
Confidence 3579999999999973 2333322 2334555 6788 9999999999999999999888764
No 234
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.10 E-value=0.00085 Score=51.33 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=41.3
Q ss_pred CCCCeEEEEEecCCCCCCCCC-CHHHHHHHhh-------hcCCcceEEEcccCCCC----------CHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREV-DFNEAEEMGE-------YVPEIHYVMETSAKDST----------NVEEAFYCLANELK 70 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~----------~v~~lf~~l~~~i~ 70 (106)
..++|+|+|+||+|+...+.. ...+...+.. .. .+++ +.+||++|. |++.+|+.+++.++
T Consensus 114 ~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l-~~pv-l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 114 ELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQL-DFPI-VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccc-cCcE-EechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 357899999999998643210 0122222221 23 4578 999999996 79999999888775
Q ss_pred H
Q psy5780 71 N 71 (106)
Q Consensus 71 ~ 71 (106)
.
T Consensus 192 ~ 192 (594)
T TIGR01394 192 A 192 (594)
T ss_pred C
Confidence 3
No 235
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.06 E-value=0.0015 Score=46.68 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=38.6
Q ss_pred EEEEEecCCCCCCCCCC--HHHHHHHhhh-------cCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 14 SRVWSNKCDLESEREVD--FNEAEEMGEY-------VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 14 ~ilv~nK~Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
-++|.||+|+....... ..+....... + ..++ +.+||+++.||++++..+.+.+.....
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w-~~pV-i~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGW-QPPV-LTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCC-CCCE-EEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 38999999986432110 1111111111 2 2478 999999999999999999987764443
No 236
>KOG0072|consensus
Probab=96.99 E-value=0.00059 Score=43.43 Aligned_cols=59 Identities=24% Similarity=0.209 Sum_probs=40.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHH-----hhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEM-----GEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+..++++.||.|.... ....++... .+.. .+.+ |++||.+|+|+++.++++.+.+..+
T Consensus 118 q~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r-~~~I-v~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 118 QHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDR-IWQI-VKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cCceEEEEeccccchhh--hhHHHHHHHhChHHHhhh-eeEE-EeeccccccCCcHHHHHHHHHHhcc
Confidence 34678899999998632 122222111 1222 4678 9999999999999999999887653
No 237
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.00087 Score=51.46 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=48.5
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.+-++|++++.|.+|...++.+.. +...+.+.. +.++ +.+||++|.|++++...+.+....
T Consensus 105 lE~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~L-GvPV-v~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 105 LELGIPMILALNMIDEAKKRGIRI-DIEKLSKLL-GVPV-VPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred HHcCCCeEEEeccHhhHHhcCCcc-cHHHHHHHh-CCCE-EEEEeecCCCHHHHHHHHHHhccc
Confidence 346789999999999876655443 356677888 9999 999999999999998888754433
No 238
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=96.95 E-value=0.0011 Score=48.66 Aligned_cols=49 Identities=24% Similarity=0.159 Sum_probs=32.1
Q ss_pred eEEEEEecCCCCCCCC----CCHHHHHHHhhhcC----CcceEEEcccCCCCCHHHHH
Q psy5780 13 DSRVWSNKCDLESERE----VDFNEAEEMGEYVP----EIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~lf 62 (106)
|+++|+||+|+.+... ...++...+.+..+ ..++ +.+||++|.|+++++
T Consensus 141 ~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~i-i~iSA~~g~gi~~~~ 197 (425)
T PRK12317 141 QLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPF-IPVSAFEGDNVVKKS 197 (425)
T ss_pred eEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceE-EEeecccCCCccccc
Confidence 6899999999864211 01123344444441 2468 999999999998754
No 239
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.95 E-value=0.0029 Score=51.26 Aligned_cols=27 Identities=19% Similarity=0.237 Sum_probs=22.0
Q ss_pred CcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 43 EIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 43 ~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
..++ +.+||++|+|+++|...|.....
T Consensus 647 ~v~i-VpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 647 TVAI-VPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred CceE-EEEEcCCCCCHHHHHHHHHHhhH
Confidence 3578 99999999999999987765443
No 240
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.90 E-value=0.0042 Score=47.51 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.2
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++ +.+||++|.|+++++..+....
T Consensus 193 v~i-vpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 193 VAI-VPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred ceE-eeccCCCCCChHHHHHHHHHHH
Confidence 578 9999999999999998876543
No 241
>KOG3905|consensus
Probab=96.83 E-value=0.0043 Score=44.57 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=48.1
Q ss_pred CCCCeEEEEEecCCCC----CCCC-------CCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 9 DSAHDSRVWSNKCDLE----SERE-------VDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.-++|+++|.+|+|.. .... +.....+.|+-++ +... |.||+|...|++-+...|+..+....
T Consensus 220 NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~-GaaL-iyTSvKE~KNidllyKYivhr~yG~~ 293 (473)
T KOG3905|consen 220 NLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRY-GAAL-IYTSVKETKNIDLLYKYIVHRSYGFP 293 (473)
T ss_pred cCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHc-Ccee-EEeecccccchHHHHHHHHHHhcCcc
Confidence 3579999999999982 1111 1123356778888 8899 99999999999999999988877654
No 242
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.76 E-value=0.00074 Score=45.19 Aligned_cols=47 Identities=19% Similarity=0.079 Sum_probs=28.9
Q ss_pred CeEEEEEecCCCCCC--CCC----CHHHHHHHhhhcC----CcceEEEcccCCCCCHH
Q psy5780 12 HDSRVWSNKCDLESE--REV----DFNEAEEMGEYVP----EIHYVMETSAKDSTNVE 59 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~--~~~----~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~ 59 (106)
.|+++|+||+|+... ... .......+.+..+ .+++ +.+||++|.|++
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~i-i~iSA~tg~gi~ 194 (219)
T cd01883 138 KQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPF-IPISGLTGDNLI 194 (219)
T ss_pred CeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceE-EEeecCcCCCCC
Confidence 578889999998631 100 0111222233331 2568 999999999986
No 243
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=96.75 E-value=0.0023 Score=45.44 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=41.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHH-HHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFY-CLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~-~l~~~i~~~~ 73 (106)
...|+|+|+||.|+..... ....+....+...+ +.+||+.+.+++++.+ .+.+.+++..
T Consensus 213 t~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~i-I~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 213 RSKPMVIAANKADIPDAEN----NISKLRLKYPDEIV-VPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred cCCcEEEEEEHHHccChHH----HHHHHHhhCCCCeE-EEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 4589999999999753221 11222223324578 9999999999999987 5887776543
No 244
>KOG1673|consensus
Probab=96.74 E-value=0.002 Score=41.59 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCCCCeEEEEEecCCCCCC-----CCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 8 PDSAHDSRVWSNKCDLESE-----REVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.+..+| |+||+|.|+.-. +.....+++.+++.. .... |.+|+....||..+|..+..++....
T Consensus 122 NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m-nAsL-~F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 122 NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVM-NASL-FFCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHh-CCcE-EEeeccccccHHHHHHHHHHHHhCCc
Confidence 334566 578999996421 111223456677777 7888 99999999999999998877776553
No 245
>KOG1532|consensus
Probab=96.74 E-value=0.0061 Score=42.85 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=41.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHH--------------------------hhhcCCcceEEEcccCCCCCHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEM--------------------------GEYVPEIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~Sa~~~~~v~~lf 62 (106)
.-++|+|+|.||+|+.+.. +..+.+..| .+-+.++.. +.+|+.+|.|.+++|
T Consensus 179 ktklp~ivvfNK~Dv~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrt-v~VSs~tG~G~ddf~ 256 (366)
T KOG1532|consen 179 KTKLPFIVVFNKTDVSDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRT-VGVSSVTGEGFDDFF 256 (366)
T ss_pred hccCCeEEEEecccccccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCce-EEEecccCCcHHHHH
Confidence 3578999999999996431 111111111 011123567 899999999999999
Q ss_pred HHHHHHHHHhh
Q psy5780 63 YCLANELKNRQ 73 (106)
Q Consensus 63 ~~l~~~i~~~~ 73 (106)
..+-..+-++.
T Consensus 257 ~av~~~vdEy~ 267 (366)
T KOG1532|consen 257 TAVDESVDEYE 267 (366)
T ss_pred HHHHHHHHHHH
Confidence 88876665543
No 246
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.72 E-value=0.0016 Score=43.21 Aligned_cols=47 Identities=26% Similarity=0.203 Sum_probs=29.2
Q ss_pred eEEEEEecCCCCCCCCC----CHHHHHHHhhhcC--CcceEEEcccCCCCCHHH
Q psy5780 13 DSRVWSNKCDLESEREV----DFNEAEEMGEYVP--EIHYVMETSAKDSTNVEE 60 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~ 60 (106)
++|+|+||+|+...... .......+...++ ..++ +.+||+++.|+++
T Consensus 132 ~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i-i~iSA~~g~ni~~ 184 (208)
T cd04166 132 HVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITF-IPISALDGDNVVS 184 (208)
T ss_pred cEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceE-EEEeCCCCCCCcc
Confidence 46778999998642210 0112233344441 2458 9999999999875
No 247
>KOG0076|consensus
Probab=96.70 E-value=0.0016 Score=42.57 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=44.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHH---hhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEM---GEYV--PEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++|+++..||.|+.+... ..+.... ++.. +...+ ..+||.+|+||++-..++++.+.++.
T Consensus 125 eg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~-~pvSal~gegv~egi~w~v~~~~kn~ 190 (197)
T KOG0076|consen 125 EGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPF-QPVSALTGEGVKEGIEWLVKKLEKNV 190 (197)
T ss_pred cCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCcc-ccchhhhcccHHHHHHHHHHHHhhcc
Confidence 5799999999999875332 2222222 1222 24578 99999999999999999999988773
No 248
>PRK12736 elongation factor Tu; Reviewed
Probab=96.65 E-value=0.0033 Score=45.80 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=35.2
Q ss_pred CCCe-EEEEEecCCCCCCCCCC---HHHHHHHhhhcC----CcceEEEcccCCCC--------CHHHHHHHHHHHH
Q psy5780 10 SAHD-SRVWSNKCDLESEREVD---FNEAEEMGEYVP----EIHYVMETSAKDST--------NVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~----~~~~~~~~Sa~~~~--------~v~~lf~~l~~~i 69 (106)
.++| +|++.||+|+.+..... ..+...+....+ ..++ +.+||+++. ++..+++.+.+.+
T Consensus 126 ~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~i-i~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 126 VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPV-IRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccE-EEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 4678 67889999986432211 112333333331 2578 999999984 4556666555544
No 249
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.002 Score=46.03 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=43.2
Q ss_pred eEEEEEecCCCCCCCC--CCHHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 13 DSRVWSNKCDLESERE--VDFNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+|+|-||+||.++.. ...++...|.+-. .+.++ +.+||..+.|++.+++.|.+.++.-..
T Consensus 142 ~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPI-IPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 142 NIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPI-IPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred eEEEEecccceecHHHHHHHHHHHHHHhcccccCCCce-eeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 5788999999975322 1223334444321 14588 999999999999999999998876544
No 250
>KOG1145|consensus
Probab=96.57 E-value=0.01 Score=45.18 Aligned_cols=56 Identities=16% Similarity=0.036 Sum_probs=39.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHh------hhc-CCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMG------EYV-PEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
..++|+|+..||+|-+... ......++. +.+ +...+ +++||++|+|++.|-+.+.-
T Consensus 251 ~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQv-ipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 251 SANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQV-IPISALTGENLDLLEEAILL 313 (683)
T ss_pred hcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeE-EEeecccCCChHHHHHHHHH
Confidence 4689999999999976322 222233332 233 23578 99999999999998887753
No 251
>PLN00023 GTP-binding protein; Provisional
Probab=96.54 E-value=0.0042 Score=44.40 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=24.3
Q ss_pred CCeEEEEEecCCCCCCC---C---CCHHHHHHHhhhc
Q psy5780 11 AHDSRVWSNKCDLESER---E---VDFNEAEEMGEYV 41 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~---~---~~~~~~~~~~~~~ 41 (106)
++|++|||||+||...+ . +..+.+..|++.+
T Consensus 151 ~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~ 187 (334)
T PLN00023 151 PVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQ 187 (334)
T ss_pred CCcEEEEEECccccccccccccccccHHHHHHHHHHc
Confidence 58999999999997542 2 3567888888876
No 252
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.49 E-value=0.0032 Score=41.89 Aligned_cols=62 Identities=16% Similarity=0.022 Sum_probs=39.4
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCH--HHHH-HHhhhcCCcc--eEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDF--NEAE-EMGEYVPEIH--YVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~--~~~~-~~~~~~~~~~--~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
...++|+++|.||+|-........ .... .+.... ... + +.+|+.++.|++++...|.+.+..
T Consensus 132 ~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~-~~~~~~-~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 132 LELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP-PDDQWV-VLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC-CccceE-EEEecccccCHHHHHHHHHHHhhc
Confidence 446899999999999654322111 1111 122222 222 6 788999999999998888776543
No 253
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.45 E-value=0.0082 Score=39.66 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=29.6
Q ss_pred CCCe-EEEEEecCCCCCCCCCC---HHHHHHHhhhc----CCcceEEEcccCCCCCH
Q psy5780 10 SAHD-SRVWSNKCDLESEREVD---FNEAEEMGEYV----PEIHYVMETSAKDSTNV 58 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v 58 (106)
.++| +|+|.||+|+....... ..+...+.... ..+++ +.+||++|.|+
T Consensus 116 ~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~i-ipiSa~~g~n~ 171 (195)
T cd01884 116 VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI-VRGSALKALEG 171 (195)
T ss_pred cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeE-EEeeCccccCC
Confidence 4576 77899999985322111 11233333333 13578 99999999985
No 254
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.44 E-value=0.013 Score=41.85 Aligned_cols=51 Identities=24% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
-+|-++|.||+|+.. .+....+.+.. .+ +.+||+.+.|++++.+.|.+.+-
T Consensus 239 Y~p~l~v~NKiD~~~-----~e~~~~l~~~~---~~-v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 239 YKPALYVVNKIDLPG-----LEELERLARKP---NS-VPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeeEEEEecccccC-----HHHHHHHHhcc---ce-EEEecccCCCHHHHHHHHHHhhC
Confidence 579999999999864 33444444433 56 88999999999999998877654
No 255
>PRK10218 GTP-binding protein; Provisional
Probab=96.22 E-value=0.012 Score=45.25 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=38.8
Q ss_pred CCCeEEEEEecCCCCCCCCC-CHHHHHHHhh-------hcCCcceEEEcccCCCC----------CHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREV-DFNEAEEMGE-------YVPEIHYVMETSAKDST----------NVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~----------~v~~lf~~l~~~i~ 70 (106)
.++|.++|+||+|+...+.. ...+...+.. .. .+++ +.+||++|. ++..|++.+.+.++
T Consensus 119 ~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~-~~PV-i~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 119 YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL-DFPI-VYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc-CCCE-EEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 57899999999998643210 1112222221 12 4678 999999998 57888887777665
No 256
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.20 E-value=0.017 Score=38.01 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=40.1
Q ss_pred CCeEEEEEecCCCCCCCC-------CCHHH----HHHH----hhh--cCCcceEEEcccC--CCCCHHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESERE-------VDFNE----AEEM----GEY--VPEIHYVMETSAK--DSTNVEEAFYCLANELKN 71 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~-------~~~~~----~~~~----~~~--~~~~~~~~~~Sa~--~~~~v~~lf~~l~~~i~~ 71 (106)
+.|+++|+||+|+..... ...++ .... ... .....+ |-+|+. .+.++..+.+.+...+++
T Consensus 107 ~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v-~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 107 GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPV-FLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCE-EEEeCCChhhcChHHHHHHHHHHhhH
Confidence 579999999999832111 00111 1111 111 112367 999998 678999999999999987
Q ss_pred hhc
Q psy5780 72 RQS 74 (106)
Q Consensus 72 ~~~ 74 (106)
.+.
T Consensus 186 ~~~ 188 (197)
T cd04104 186 HKR 188 (197)
T ss_pred HHH
Confidence 654
No 257
>KOG1490|consensus
Probab=96.11 E-value=0.02 Score=43.23 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=41.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHH--HHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEA--EEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.+.|+|+|.||+|+.....+..+.. ......-+.+++ +++|..+.+||-++....-+.++.
T Consensus 280 aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v-~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 280 ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV-VQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceE-EEecccchhceeeHHHHHHHHHHH
Confidence 4689999999999876555554332 222223325789 999999999998776555544443
No 258
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.00 E-value=0.036 Score=36.46 Aligned_cols=54 Identities=17% Similarity=0.056 Sum_probs=40.0
Q ss_pred CeEEEEEecCCCCCCCCCCHHHHHHHhhhc-CCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREVDFNEAEEMGEYV-PEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+|+++..||.||.+.. +.+..+++.+.. -..++ ++++|..+.++.+.+..+...
T Consensus 122 ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~v-i~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 122 IPVVVAINKQDLFDAL--PPEKIREALKLELLSVPV-IEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCEEEEeeccccCCCC--CHHHHHHHHHhccCCCce-eeeecccchhHHHHHHHHHhh
Confidence 9999999999998643 455555554433 26788 999999999988877766533
No 259
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=95.87 E-value=0.0075 Score=45.03 Aligned_cols=48 Identities=27% Similarity=0.239 Sum_probs=30.1
Q ss_pred eEEEEEecCCCCCCCCCCHHH----HHHHhhhc---CCcceEEEcccCCCCCHHHH
Q psy5780 13 DSRVWSNKCDLESEREVDFNE----AEEMGEYV---PEIHYVMETSAKDSTNVEEA 61 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~~~~----~~~~~~~~---~~~~~~~~~Sa~~~~~v~~l 61 (106)
++|+|+||+|+.+........ ...+.... ...++ +.+||++|.|++++
T Consensus 162 ~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~i-ipvSA~~g~ni~~~ 216 (474)
T PRK05124 162 HLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRF-VPLSALEGDNVVSQ 216 (474)
T ss_pred ceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeecCCCcccc
Confidence 678899999986422111111 12222332 13678 99999999999764
No 260
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.81 E-value=0.018 Score=41.89 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCCeEE-EEEecCCCCCCCCCC---HHHHHHHhhhcCC----cceEEEcccCCCC
Q psy5780 10 SAHDSR-VWSNKCDLESEREVD---FNEAEEMGEYVPE----IHYVMETSAKDST 56 (106)
Q Consensus 10 ~~ip~i-lv~nK~Dl~~~~~~~---~~~~~~~~~~~~~----~~~~~~~Sa~~~~ 56 (106)
.++|.+ +|+||+|+.+..... ..+...+.+.++. +++ +.+||+++.
T Consensus 126 ~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~i-i~vSa~~g~ 179 (394)
T TIGR00485 126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPI-IRGSALKAL 179 (394)
T ss_pred cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccE-EECcccccc
Confidence 467765 689999986432211 1234444554411 689 999999885
No 261
>PLN00043 elongation factor 1-alpha; Provisional
Probab=95.71 E-value=0.013 Score=43.53 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=32.2
Q ss_pred CCCe-EEEEEecCCCCCCCC------CCHHHHHHHhhhcC----CcceEEEcccCCCCCHHH
Q psy5780 10 SAHD-SRVWSNKCDLESERE------VDFNEAEEMGEYVP----EIHYVMETSAKDSTNVEE 60 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~------~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~ 60 (106)
.++| +|+++||+|+.+... ...++...+.+..+ .++| +++||++|.|+.+
T Consensus 143 ~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~-ipiSa~~G~ni~~ 203 (447)
T PLN00043 143 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPF-VPISGFEGDNMIE 203 (447)
T ss_pred cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceE-EEEeccccccccc
Confidence 4675 688899999862111 01233455555551 2579 9999999999853
No 262
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.70 E-value=0.023 Score=40.19 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=25.6
Q ss_pred CcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 43 EIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 43 ~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++ +.|||.+|+|+++++..+.+.......
T Consensus 228 ~ppv-~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 228 RPPV-VTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred CCce-eEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 3468 999999999999999998877665544
No 263
>KOG1423|consensus
Probab=95.70 E-value=0.017 Score=41.22 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=22.6
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 45 HYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 45 ~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+ |.+||++|.||+++-++|....+..
T Consensus 247 ~v-F~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 247 RV-FMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred eE-EEEecccccCHHHHHHHHHhcCCCC
Confidence 47 9999999999999999987665443
No 264
>PRK12735 elongation factor Tu; Reviewed
Probab=95.61 E-value=0.022 Score=41.57 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=35.9
Q ss_pred CCCeEE-EEEecCCCCCCCCCC---HHHHHHHhhhcC----CcceEEEcccCCCC----------CHHHHHHHHHHHH
Q psy5780 10 SAHDSR-VWSNKCDLESEREVD---FNEAEEMGEYVP----EIHYVMETSAKDST----------NVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~i-lv~nK~Dl~~~~~~~---~~~~~~~~~~~~----~~~~~~~~Sa~~~~----------~v~~lf~~l~~~i 69 (106)
.++|.+ ++.||+|+.+..... ..+...+.+.++ .+++ +.+||+++. ++..+++.|...+
T Consensus 126 ~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~i-i~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPI-IRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeE-EecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 468866 579999986422111 113334444431 2678 999999985 5666666665544
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.58 E-value=0.011 Score=43.33 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=36.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHH-HHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEE-AFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~-lf~~l~~~i 69 (106)
...|+|+|.||.|+.... .....+.+. ++..+ +.+||+.+.++++ +...+++.+
T Consensus 216 t~KPvI~VlNK~D~~~~~----~~l~~i~~~-~~~~v-vpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 216 ISKPMVIAANKADLPPAE----ENIERLKEE-KYYIV-VPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred cCCCEEEEEEchhcccch----HHHHHHHhc-CCCcE-EEEcchhhhhHHHHHHHhHHhhC
Confidence 458999999999975321 112223222 36678 9999999999988 555554443
No 266
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.55 E-value=0.012 Score=40.72 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=32.4
Q ss_pred eEEEEEecCCCCCCCCCCH--HHHHHHhhh----cCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 13 DSRVWSNKCDLESEREVDF--NEAEEMGEY----VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.=|+|.||.|.+....... ..+..+... | ..++ +.+||.++.|++++++.|.+.....
T Consensus 169 aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W-~ppV-~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 169 ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGW-RPPV-LKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp -SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB---EE-EEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCC-CCCE-EEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3478899999642111111 111122221 2 3478 9999999999999998887654433
No 267
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=95.43 E-value=0.024 Score=41.46 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=29.1
Q ss_pred eEEEEEecCCCCCCCCCCH----HHHHHHhhhc--CCcceEEEcccCCCCCHHH
Q psy5780 13 DSRVWSNKCDLESEREVDF----NEAEEMGEYV--PEIHYVMETSAKDSTNVEE 60 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~ 60 (106)
++++|+||+|+.+...... +....+.+.. ...++ +.+||++|.|+++
T Consensus 135 ~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i-ipiSA~~g~ni~~ 187 (406)
T TIGR02034 135 HVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTF-IPLSALKGDNVVS 187 (406)
T ss_pred cEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccE-EEeecccCCCCcc
Confidence 4788999999864221111 1122233333 12468 9999999999875
No 268
>KOG0071|consensus
Probab=95.39 E-value=0.044 Score=34.94 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=41.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc----CCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV----PEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++.+||-|+++. ...++...+.+.. ..+.+ ..++|.+|.++.+-|.++...+
T Consensus 117 ~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~v-qp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 117 RDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYV-QPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred hcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEe-eccccccchhHHHHHHHHHhhc
Confidence 46799999999999854 3455555554322 12446 8999999999999999987654
No 269
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.36 E-value=0.017 Score=39.46 Aligned_cols=58 Identities=19% Similarity=0.111 Sum_probs=32.5
Q ss_pred CCCeEEEEEecCCCCCCCC----------------------CCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESERE----------------------VDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~----------------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
.+.|.|.|.||+|+.+... ...+........+... .+ +.+|+.+++++++++..+-
T Consensus 155 ~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f-~pls~~~~~~~~~L~~~id 233 (238)
T PF03029_consen 155 LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRF-IPLSSKDGEGMEELLAAID 233 (238)
T ss_dssp HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS----EE-BTTTTTTHHHHHHHHH
T ss_pred CCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceE-EEEECCChHHHHHHHHHHH
Confidence 4689999999999975110 0001112222333233 68 9999999999999987765
Q ss_pred HH
Q psy5780 67 NE 68 (106)
Q Consensus 67 ~~ 68 (106)
+.
T Consensus 234 ~a 235 (238)
T PF03029_consen 234 KA 235 (238)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 270
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.08 E-value=0.044 Score=41.08 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=45.4
Q ss_pred CCCeEEEEEecCCCCC----CCC-------CCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLES----ERE-------VDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++|++||.+|+|... ... +....++.++-.+ |..+ |-||++...+++.++..|...+....
T Consensus 195 lGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~y-GAsL-~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 195 LGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKY-GASL-IYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred cCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhc-CCeE-EEeeccccccHHHHHHHHHHHhccCC
Confidence 4799999999999631 111 1122345667778 8888 88999999999988888877776554
No 271
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.69 E-value=0.01 Score=35.27 Aligned_cols=41 Identities=34% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVE 59 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 59 (106)
..++|.++++||.|+.+...+. ... ...+ +++|++++.|+.
T Consensus 75 k~dl~~~~~~nk~dl~~~~~~~--------~~~-~~~~-~~~s~~~~~~~~ 115 (124)
T smart00010 75 KSDLPILVGGNRDVLEEERQVA--------TEE-GLEF-AETSAKTPEEGE 115 (124)
T ss_pred CCCCcEEEEeechhhHhhCcCC--------HHH-HHHH-HHHhCCCcchhh
Confidence 4568888999999974322222 222 3356 888999999874
No 272
>CHL00071 tufA elongation factor Tu
Probab=94.66 E-value=0.046 Score=40.07 Aligned_cols=48 Identities=21% Similarity=0.061 Sum_probs=29.6
Q ss_pred CCCe-EEEEEecCCCCCCCCCC---HHHHHHHhhhcC----CcceEEEcccCCCCCH
Q psy5780 10 SAHD-SRVWSNKCDLESEREVD---FNEAEEMGEYVP----EIHYVMETSAKDSTNV 58 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v 58 (106)
.++| +|++.||+|+.+..... ..+...+.+..+ .+++ +.+||.+|.|+
T Consensus 126 ~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i-i~~Sa~~g~n~ 181 (409)
T CHL00071 126 VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPI-VSGSALLALEA 181 (409)
T ss_pred cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceE-EEcchhhcccc
Confidence 5688 67899999986432211 112333444331 2678 99999998753
No 273
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.62 E-value=0.062 Score=41.51 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=29.5
Q ss_pred CeEEEEEecCCCCCCCCCCH----HHHHHHhhhc--CCcceEEEcccCCCCCHHH
Q psy5780 12 HDSRVWSNKCDLESEREVDF----NEAEEMGEYV--PEIHYVMETSAKDSTNVEE 60 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~ 60 (106)
.++|+|.||+|+.+...... .+...+.+.. ...++ +.+||++|.|+++
T Consensus 158 ~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i-ipiSA~~g~ni~~ 211 (632)
T PRK05506 158 RHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTF-IPISALKGDNVVT 211 (632)
T ss_pred CeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccE-EEEecccCCCccc
Confidence 46788999999864221101 1122233343 12468 9999999999874
No 274
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=94.53 E-value=0.21 Score=33.94 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=21.2
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++ |.-||.++.||..+++.+.+.++
T Consensus 210 ~Pv-~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 210 FPV-YHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EEE-EEccccCCcCHHHHHHHHHHhcC
Confidence 467 77899999999999988887654
No 275
>KOG0466|consensus
Probab=94.27 E-value=0.044 Score=39.26 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=42.5
Q ss_pred eEEEEEecCCCCCCCC--CCHHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 13 DSRVWSNKCDLESERE--VDFNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
-++++-||+||..+.+ ...++...|.... .+.++ +.+||.-+.|++.+.+.+++.++.-.
T Consensus 181 hiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPi-iPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPI-IPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred eEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCce-eeehhhhccChHHHHHHHHhcCCCCc
Confidence 5788899999965332 1223334444331 24688 99999999999999999998887543
No 276
>KOG1144|consensus
Probab=93.92 E-value=0.12 Score=40.93 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=25.2
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 45 HYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 45 ~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+ +.|||.+|+||.+|+..|+.....++.
T Consensus 663 si-VPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 663 SI-VPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred Ee-eecccccCCCcHHHHHHHHHHHHHHHH
Confidence 45 799999999999999999988777765
No 277
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=93.63 E-value=0.069 Score=39.68 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=29.5
Q ss_pred CCCe-EEEEEecCCCCC--CCC--C--CHHHHHHHhhhcC----CcceEEEcccCCCCCHHH
Q psy5780 10 SAHD-SRVWSNKCDLES--ERE--V--DFNEAEEMGEYVP----EIHYVMETSAKDSTNVEE 60 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~--~~~--~--~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~ 60 (106)
.++| +|++.||+|... ... + ...+...+....+ .+++ +.+||.+|.|+.+
T Consensus 143 ~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~-ipiSa~~g~ni~~ 203 (446)
T PTZ00141 143 LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPF-IPISGWQGDNMIE 203 (446)
T ss_pred cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceE-EEeecccCCCccc
Confidence 4677 568999999532 110 0 0122233333221 3578 9999999999854
No 278
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.58 E-value=0.11 Score=38.42 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=39.1
Q ss_pred CCeE-EEEEecCCCCCCCCCCHHHHHHHhhh--cCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 11 AHDS-RVWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 11 ~ip~-ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++- ++|.||+|..+...+. +........ +...++ |.+|+++|+||++|...|.+..-
T Consensus 102 gi~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i-~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 102 GIKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKI-FKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred CCCceEEEEeccccccHHHHH-HHHHHHHhhcccccccc-cccccccCCCHHHHHHHHHHhhh
Confidence 4454 8999999987543211 111111111 335678 99999999999999999988773
No 279
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=93.29 E-value=0.11 Score=37.90 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=30.4
Q ss_pred eEEEEEecCCCCCCCCCCHH----HHHHHhhhcC--CcceEEEcccCCCCCHH
Q psy5780 13 DSRVWSNKCDLESEREVDFN----EAEEMGEYVP--EIHYVMETSAKDSTNVE 59 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~~~----~~~~~~~~~~--~~~~~~~~Sa~~~~~v~ 59 (106)
-++|..||+||.+..+...+ +...|++..+ ...+ +.+||..|.||-
T Consensus 141 hvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~-IPiSAl~GDNV~ 192 (431)
T COG2895 141 HVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRF-IPISALLGDNVV 192 (431)
T ss_pred EEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceE-EechhccCCccc
Confidence 45777999999875442222 2234555551 2368 999999999973
No 280
>PRK12740 elongation factor G; Reviewed
Probab=93.22 E-value=0.29 Score=38.10 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=24.0
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+++ |..||++|.|++.+++.+...++.-
T Consensus 237 ~Pv-~~gSA~~~~Gv~~LLd~i~~~lPsp 264 (668)
T PRK12740 237 VPV-FCGSALKNKGVQRLLDAVVDYLPSP 264 (668)
T ss_pred EEE-EeccccCCccHHHHHHHHHHHCCCh
Confidence 457 8899999999999999999887644
No 281
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=93.17 E-value=0.059 Score=35.73 Aligned_cols=15 Identities=20% Similarity=-0.057 Sum_probs=13.0
Q ss_pred CCCeEEEEEecCCCC
Q psy5780 10 SAHDSRVWSNKCDLE 24 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~ 24 (106)
.++|+++|+||+|+.
T Consensus 122 ~~~p~iiviNK~D~~ 136 (213)
T cd04167 122 EGLPIVLVINKIDRL 136 (213)
T ss_pred cCCCEEEEEECcccC
Confidence 458999999999975
No 282
>COG1084 Predicted GTPase [General function prediction only]
Probab=92.96 E-value=0.18 Score=36.26 Aligned_cols=57 Identities=16% Similarity=0.031 Sum_probs=37.4
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+.|+++|.||+|+.+... .+.........++... ...++..+.+++.+...+.+...
T Consensus 280 ~~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 280 KAPIVVVINKIDIADEEK--LEEIEASVLEEGGEEP-LKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred CCCeEEEEecccccchhH--HHHHHHHHHhhccccc-cceeeeehhhHHHHHHHHHHHhh
Confidence 479999999999875433 2333333343324446 77788888888877776665543
No 283
>PLN03127 Elongation factor Tu; Provisional
Probab=92.90 E-value=0.13 Score=38.28 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=32.5
Q ss_pred CCCe-EEEEEecCCCCCCCCCCH---HHHHHHhhhc----CCcceEEEcccC---CCCC-------HHHHHHHHHHHHH
Q psy5780 10 SAHD-SRVWSNKCDLESEREVDF---NEAEEMGEYV----PEIHYVMETSAK---DSTN-------VEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~----~~~~~~~~~Sa~---~~~~-------v~~lf~~l~~~i~ 70 (106)
.++| +|++.||+|+.+...... .+...+.... ..+++ +.+||. ++.| +..+++.+...++
T Consensus 175 ~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpi-ip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 175 VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPI-IRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceE-EEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 5688 478899999864222111 1112222221 02567 777775 4555 5666666655543
No 284
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=92.51 E-value=0.28 Score=36.28 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=35.7
Q ss_pred CCCeEEEEEecCCCCCCCCCC--HHHH-----------------------HHHhhhcC-CcceEEEcccCCCCCHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVD--FNEA-----------------------EEMGEYVP-EIHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~--~~~~-----------------------~~~~~~~~-~~~~~~~~Sa~~~~~v~~lf~ 63 (106)
-++|+|+|.+|+|+.++..+. .++. ....+... -.++ |.+|+-+|+|++- +.
T Consensus 254 ~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi-~~tSsVTg~Gldl-L~ 331 (527)
T COG5258 254 MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPI-FYTSSVTGEGLDL-LD 331 (527)
T ss_pred hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEE-EEEecccCccHHH-HH
Confidence 468999999999996542110 0000 11111110 2478 9999999999864 44
Q ss_pred HHHHHHHHh
Q psy5780 64 CLANELKNR 72 (106)
Q Consensus 64 ~l~~~i~~~ 72 (106)
.+...++..
T Consensus 332 e~f~~Lp~r 340 (527)
T COG5258 332 EFFLLLPKR 340 (527)
T ss_pred HHHHhCCcc
Confidence 454455544
No 285
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=92.45 E-value=0.18 Score=32.63 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.9
Q ss_pred CCCeEEEEEecCCCCC
Q psy5780 10 SAHDSRVWSNKCDLES 25 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~ 25 (106)
.+.|+|+|.||+||.+
T Consensus 29 ~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 29 GNKKLVLVLNKIDLVP 44 (172)
T ss_pred CCCCEEEEEehhhcCC
Confidence 4689999999999964
No 286
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=92.41 E-value=0.48 Score=36.08 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=24.3
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++ |.-||.++.||..+++.+++.++.=
T Consensus 249 ~PV-~~GSA~~n~Gv~~LLd~i~~~~P~P 276 (526)
T PRK00741 249 TPV-FFGSALNNFGVQEFLDAFVEWAPAP 276 (526)
T ss_pred EEE-EEeecccCcCHHHHHHHHHHHCCCC
Confidence 457 8899999999999999999888743
No 287
>PRK00049 elongation factor Tu; Reviewed
Probab=92.30 E-value=0.38 Score=35.20 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=26.9
Q ss_pred CCCeEE-EEEecCCCCCCCCCC---HHHHHHHhhhc----CCcceEEEcccCCCC
Q psy5780 10 SAHDSR-VWSNKCDLESEREVD---FNEAEEMGEYV----PEIHYVMETSAKDST 56 (106)
Q Consensus 10 ~~ip~i-lv~nK~Dl~~~~~~~---~~~~~~~~~~~----~~~~~~~~~Sa~~~~ 56 (106)
.++|.+ ++.||+|+.+..... ..+...+.... ...++ +.+||+++.
T Consensus 126 ~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~i-v~iSa~~g~ 179 (396)
T PRK00049 126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPI-IRGSALKAL 179 (396)
T ss_pred cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcE-EEeeccccc
Confidence 468876 579999986422111 11222333332 13678 999999875
No 288
>KOG1191|consensus
Probab=92.04 E-value=0.18 Score=37.98 Aligned_cols=64 Identities=19% Similarity=0.061 Sum_probs=40.8
Q ss_pred CCCeEEEEEecCCCCCCC-CCCHHHHHHHhhh--cCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESER-EVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..-|+|++.||.|+..+- ..+... ..+... .+..+.+.++|+++++|++.|...+.+.+...-.
T Consensus 388 ~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 388 EKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cccceEEEechhhccCccccccCCc-eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 457899999999997541 111100 111111 1122332679999999999999999887776644
No 289
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=91.98 E-value=0.13 Score=27.61 Aligned_cols=13 Identities=31% Similarity=0.153 Sum_probs=8.9
Q ss_pred CCCeEEEEEecCC
Q psy5780 10 SAHDSRVWSNKCD 22 (106)
Q Consensus 10 ~~ip~ilv~nK~D 22 (106)
++.|+++|.||+|
T Consensus 46 ~~~P~i~V~nK~D 58 (58)
T PF06858_consen 46 PNKPVIVVLNKID 58 (58)
T ss_dssp TTS-EEEEE--TT
T ss_pred CCCCEEEEEeccC
Confidence 4789999999998
No 290
>PRK13351 elongation factor G; Reviewed
Probab=91.72 E-value=0.6 Score=36.49 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=23.7
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++ |..||+++.||+.|++.++..++.-
T Consensus 253 ~PV-~~gSA~~~~Gv~~LLd~I~~~lPsP 280 (687)
T PRK13351 253 VPV-LFGSALKNIGIEPLLDAVVDYLPSP 280 (687)
T ss_pred EEE-EecccCcCccHHHHHHHHHHHCCCh
Confidence 356 7889999999999999999887654
No 291
>COG1161 Predicted GTPases [General function prediction only]
Probab=90.83 E-value=0.39 Score=34.22 Aligned_cols=49 Identities=18% Similarity=0.056 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 62 (106)
+.|.++|+||.||.+.. +.......+.... +... +.++++.+.++..+.
T Consensus 61 ~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~~-~~~~-~~v~~~~~~~~~~i~ 109 (322)
T COG1161 61 EKPKLLVLNKADLAPKE-VTKKWKKYFKKEE-GIKP-IFVSAKSRQGGKKIR 109 (322)
T ss_pred cCCcEEEEehhhcCCHH-HHHHHHHHHHhcC-CCcc-EEEEeecccCccchH
Confidence 34669999999997543 2333344445554 5556 777888777766555
No 292
>KOG0461|consensus
Probab=90.05 E-value=0.77 Score=33.68 Aligned_cols=59 Identities=27% Similarity=0.241 Sum_probs=30.4
Q ss_pred eEEEEEecCCCCCCCC--CCHHH-HHHHh---hh--c-CCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 13 DSRVWSNKCDLESERE--VDFNE-AEEMG---EY--V-PEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~--~~~~~-~~~~~---~~--~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
..++|.||+|+..+.+ -..+. ..... +. + +..++ +++||+.|.--++...++.+.+..+
T Consensus 124 klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI-~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 124 KLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPI-VEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred ceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCce-eEEecCCCccchhHHHHHHHHHHHh
Confidence 4678889999754321 11111 11121 11 2 12678 9999999944444444444434333
No 293
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=89.82 E-value=0.73 Score=32.72 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=40.5
Q ss_pred CCCeEEEEEecCCCCCCC----------------CCCHHHHHHHhhh-----c----CCcceEEEcccCCCCCHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER----------------EVDFNEAEEMGEY-----V----PEIHYVMETSAKDSTNVEEAFYC 64 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~----------------~~~~~~~~~~~~~-----~----~~~~~~~~~Sa~~~~~v~~lf~~ 64 (106)
.++|++|++||.|+.... .-..+.+..+... . ..+.. ..|+|.+-.++..+|..
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~-~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYP-HFTCATDTENIRFVFDA 305 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEE-EeccccchHHHHHHHHH
Confidence 478999999999974210 1122233332211 1 02344 67899999999999999
Q ss_pred HHHHHHHhh
Q psy5780 65 LANELKNRQ 73 (106)
Q Consensus 65 l~~~i~~~~ 73 (106)
+.+.|....
T Consensus 306 v~~~i~~~~ 314 (317)
T cd00066 306 VKDIILQNN 314 (317)
T ss_pred HHHHHHHHH
Confidence 988887653
No 294
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=89.67 E-value=0.4 Score=33.31 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=14.0
Q ss_pred CCCeEEEEEecCCCCC
Q psy5780 10 SAHDSRVWSNKCDLES 25 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~ 25 (106)
.++|++++.||+|+.+
T Consensus 115 ~~~p~ivviNK~D~~~ 130 (270)
T cd01886 115 YNVPRIAFVNKMDRTG 130 (270)
T ss_pred cCCCEEEEEECCCCCC
Confidence 5789999999999864
No 295
>PLN03126 Elongation factor Tu; Provisional
Probab=89.49 E-value=0.36 Score=36.31 Aligned_cols=47 Identities=21% Similarity=0.077 Sum_probs=28.1
Q ss_pred CCCe-EEEEEecCCCCCCCCCCH---HHHHHHhhhc----CCcceEEEcccCCCCC
Q psy5780 10 SAHD-SRVWSNKCDLESEREVDF---NEAEEMGEYV----PEIHYVMETSAKDSTN 57 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~----~~~~~~~~~Sa~~~~~ 57 (106)
.++| +|++.||+|+.+...... .+...+.... ..+++ +.+||.++.+
T Consensus 195 ~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~-vp~Sa~~g~n 249 (478)
T PLN03126 195 VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPI-ISGSALLALE 249 (478)
T ss_pred cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceE-EEEEcccccc
Confidence 4678 678899999864221111 1233333332 14578 8999988854
No 296
>PRK12739 elongation factor G; Reviewed
Probab=89.22 E-value=1.4 Score=34.59 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=22.3
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 45 HYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 45 ~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
++ +..||.++.|++.+++.|++.++.
T Consensus 254 Pv-~~gSa~~~~Gv~~LLd~I~~~lPs 279 (691)
T PRK12739 254 PV-LCGSAFKNKGVQPLLDAVVDYLPS 279 (691)
T ss_pred EE-EeccccCCccHHHHHHHHHHHCCC
Confidence 56 778999999999999999888764
No 297
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=89.00 E-value=0.55 Score=31.01 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=14.3
Q ss_pred CCCeEEEEEecCCCCC
Q psy5780 10 SAHDSRVWSNKCDLES 25 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~ 25 (106)
+++|+++|+||.|+..
T Consensus 108 ~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 108 NKIPVLIACNKQDLFT 123 (203)
T ss_pred CCCCEEEEecchhhcc
Confidence 6899999999999864
No 298
>KOG1424|consensus
Probab=88.65 E-value=0.49 Score=36.00 Aligned_cols=41 Identities=20% Similarity=0.021 Sum_probs=26.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCC
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKD 54 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 54 (106)
+..-.+|+.||.||....+ ......+.... ++++ +..||..
T Consensus 204 ~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~-ni~~-vf~SA~~ 244 (562)
T KOG1424|consen 204 PSKANVLLVNKADLLPPEQ--RVAWAEYFRQN-NIPV-VFFSALA 244 (562)
T ss_pred cccceEEEEehhhcCCHHH--HHHHHHHHHhc-CceE-EEEeccc
Confidence 3456788899999975332 22234445555 6888 8888876
No 299
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=88.17 E-value=0.34 Score=36.25 Aligned_cols=56 Identities=5% Similarity=0.010 Sum_probs=33.2
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccC--CCCCHHHHHHHHH
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAK--DSTNVEEAFYCLA 66 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~v~~lf~~l~ 66 (106)
+...++|+++|.||.|-.... .......+.+.+ +.++ +.+|+. +...|..++..+.
T Consensus 176 Lk~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky-~vpv-l~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 LKELNKPFIILLNSTHPYHPE--TEALRQELEEKY-DVPV-LAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHhcCCCEEEEEECcCCCCch--hHHHHHHHHHHh-CCce-EEEEHHHcCHHHHHHHHHHHH
Confidence 455789999999999932211 233344566667 6776 666653 3333444444443
No 300
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=87.97 E-value=0.47 Score=35.11 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=30.8
Q ss_pred eEEEEEecCCCCCCCCCCHHH----HHHHhhhcC----CcceEEEcccCCCCCHHHH
Q psy5780 13 DSRVWSNKCDLESEREVDFNE----AEEMGEYVP----EIHYVMETSAKDSTNVEEA 61 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~~~~----~~~~~~~~~----~~~~~~~~Sa~~~~~v~~l 61 (106)
.+|++.||.|+.+..+-..++ ...+.+..+ ...| +.+|+..|.|+.+.
T Consensus 147 ~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~F-IPiSg~~G~Nl~~~ 202 (428)
T COG5256 147 QLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPF-IPISGFKGDNLTKK 202 (428)
T ss_pred eEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeE-EecccccCCccccc
Confidence 578889999998654322222 222333331 2569 99999999998553
No 301
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=87.80 E-value=0.92 Score=30.63 Aligned_cols=15 Identities=20% Similarity=-0.008 Sum_probs=13.1
Q ss_pred CCCeEEEEEecCCCC
Q psy5780 10 SAHDSRVWSNKCDLE 24 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~ 24 (106)
.++|+++|+||+|+.
T Consensus 124 ~~~p~ilviNKiD~~ 138 (222)
T cd01885 124 ERVKPVLVINKIDRL 138 (222)
T ss_pred cCCCEEEEEECCCcc
Confidence 468999999999975
No 302
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=87.45 E-value=0.51 Score=32.85 Aligned_cols=41 Identities=15% Similarity=-0.112 Sum_probs=26.6
Q ss_pred CCCeEEEEEecCCCCCCCC--CCHHHHHHHhhhcCCcceEEEccc
Q psy5780 10 SAHDSRVWSNKCDLESERE--VDFNEAEEMGEYVPEIHYVMETSA 52 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa 52 (106)
.++|+++|+||+|+..... ............+ ++.+ |....
T Consensus 142 ~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~-~i~~-~~~~~ 184 (276)
T cd01850 142 KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEH-NIKI-YKFPE 184 (276)
T ss_pred ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHc-CCce-ECCCC
Confidence 3689999999999854221 1223344556667 7888 86654
No 303
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=86.70 E-value=1.7 Score=30.11 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=13.9
Q ss_pred CCCeEEEEEecCCCCC
Q psy5780 10 SAHDSRVWSNKCDLES 25 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~ 25 (106)
.++|+++++||+|+..
T Consensus 122 ~~~P~iivvNK~D~~~ 137 (267)
T cd04169 122 RGIPIITFINKLDREG 137 (267)
T ss_pred cCCCEEEEEECCccCC
Confidence 5789999999999864
No 304
>KOG0077|consensus
Probab=86.12 E-value=0.42 Score=31.33 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHH---hhhcC-------------CcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEM---GEYVP-------------EIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~-------------~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++.+||+|.+... ..++.... ....+ -+.+ |.+|...+.+..+.|.++..
T Consensus 120 a~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev-fmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 120 ATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV-FMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred hcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE-EEEEEEccCccceeeeehhh
Confidence 579999999999987543 22222111 11100 0246 77787777776677766654
No 305
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=85.79 E-value=0.63 Score=33.45 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=39.8
Q ss_pred CCCeEEEEEecCCCCCCC--------------C-CCHHHHHHHhh-----hcC-----CcceEEEcccCCCCCHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER--------------E-VDFNEAEEMGE-----YVP-----EIHYVMETSAKDSTNVEEAFYC 64 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~--------------~-~~~~~~~~~~~-----~~~-----~~~~~~~~Sa~~~~~v~~lf~~ 64 (106)
.++|++|++||.|+.... . -..+.+..+.. ... .+.+ ..|+|.+-.++..+|..
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~-h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYH-HFTCATDTRNIRVVFDA 328 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEE-EEeeecccHHHHHHHHH
Confidence 468999999999984210 0 11222222211 110 2344 67889999999999998
Q ss_pred HHHHHHHhh
Q psy5780 65 LANELKNRQ 73 (106)
Q Consensus 65 l~~~i~~~~ 73 (106)
+...|.+..
T Consensus 329 v~~~I~~~~ 337 (342)
T smart00275 329 VKDIILQRN 337 (342)
T ss_pred HHHHHHHHH
Confidence 888777653
No 306
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=85.60 E-value=1 Score=31.21 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=31.9
Q ss_pred CCCCeEEEEEecCCCCCCC-----CCCHHHHHHHhhhcCCcceEEEcccCCCCC---HHHHHHHHHHHHHHhh
Q psy5780 9 DSAHDSRVWSNKCDLESER-----EVDFNEAEEMGEYVPEIHYVMETSAKDSTN---VEEAFYCLANELKNRQ 73 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~---v~~lf~~l~~~i~~~~ 73 (106)
+..+|+.+|.||+|+...= ..+. ....+.+ |..+ -......... +++.|..+.+.+....
T Consensus 67 g~~~PVYvv~Tk~D~l~GF~ef~~~L~~---~~r~q~l-G~t~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 134 (266)
T PF14331_consen 67 GVRLPVYVVFTKCDLLPGFDEFFSDLSE---EEREQVL-GFTF-PYDEDADGDAWAWFDEEFDELVARLNARV 134 (266)
T ss_pred CCCCCeEeeeECCCcccCHHHHHHhCCH---HHHhCCc-cccc-CCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999986311 0111 1112334 4332 2222233333 6777777766666553
No 307
>KOG2485|consensus
Probab=84.57 E-value=1.4 Score=31.64 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.4
Q ss_pred CCCeEEEEEecCCCCCC
Q psy5780 10 SAHDSRVWSNKCDLESE 26 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~ 26 (106)
+..|-|+|.||+||.+.
T Consensus 72 ~~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 72 PPKPRIIVLNKMDLADP 88 (335)
T ss_pred CCCceEEEEecccccCc
Confidence 36788999999999874
No 308
>KOG2423|consensus
Probab=84.50 E-value=2.1 Score=32.01 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=25.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcce
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHY 46 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 46 (106)
.+..-+|+|.||+||.. ..++......+.+.+|.+.|
T Consensus 242 ~phKHli~vLNKvDLVP-twvt~~Wv~~lSkeyPTiAf 278 (572)
T KOG2423|consen 242 KPHKHLIYVLNKVDLVP-TWVTAKWVRHLSKEYPTIAF 278 (572)
T ss_pred CCcceeEEEeecccccc-HHHHHHHHHHHhhhCcceee
Confidence 35667899999999974 33455555666666655554
No 309
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=84.25 E-value=2.8 Score=27.09 Aligned_cols=32 Identities=28% Similarity=0.092 Sum_probs=23.3
Q ss_pred HHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHH
Q psy5780 33 EAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
......+.. ++++ +.+|++++.+++++...+.
T Consensus 3 ~~~~~y~~~-gy~v-~~~S~~~~~g~~~l~~~l~ 34 (161)
T PF03193_consen 3 ELLEQYEKL-GYPV-FFISAKTGEGIEELKELLK 34 (161)
T ss_dssp HHHHHHHHT-TSEE-EE-BTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHc-CCcE-EEEeCCCCcCHHHHHHHhc
Confidence 344556677 8888 9999999999988876554
No 310
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=83.44 E-value=2 Score=28.92 Aligned_cols=48 Identities=6% Similarity=-0.146 Sum_probs=27.1
Q ss_pred CCCeE-EEEEecCCCCCCCCCCH---HHHHH-Hhh-hcCCcceEEEcccCCCCCH
Q psy5780 10 SAHDS-RVWSNKCDLESEREVDF---NEAEE-MGE-YVPEIHYVMETSAKDSTNV 58 (106)
Q Consensus 10 ~~ip~-ilv~nK~Dl~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~Sa~~~~~v 58 (106)
.++|. ++|.||.|+.+...... ..... +.. ..++.++ +.+||++.-.+
T Consensus 131 ~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki-~~iSa~~~~~~ 184 (225)
T cd01882 131 HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKL-FYLSGIVHGRY 184 (225)
T ss_pred cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcE-EEEeeccCCCC
Confidence 45675 45999999863221001 11111 222 2335688 99999988554
No 311
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=83.41 E-value=3.2 Score=28.48 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.4
Q ss_pred CCCCeEEEEEecCCCCC
Q psy5780 9 DSAHDSRVWSNKCDLES 25 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~ 25 (106)
..++|.++|+||+|+..
T Consensus 114 ~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 114 EAGIPRIIFINKMDRER 130 (268)
T ss_pred HcCCCEEEEEECCccCC
Confidence 35789999999999864
No 312
>KOG1143|consensus
Probab=82.14 E-value=3.7 Score=30.60 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=32.7
Q ss_pred CCCCeEEEEEecCCCCCCCCC------------------------CHHHHHHHhhh---cCCcceEEEcccCCCCCHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREV------------------------DFNEAEEMGEY---VPEIHYVMETSAKDSTNVEEA 61 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~------------------------~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l 61 (106)
..++|+.++.+|+||.++..+ ...++...++. .+-.++ |.+|.-+|++++-+
T Consensus 301 AL~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPi-f~vSsVsGegl~ll 379 (591)
T KOG1143|consen 301 ALNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPI-FAVSSVSGEGLRLL 379 (591)
T ss_pred HhCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeE-EEEeecCccchhHH
Confidence 368999999999999764211 11111111111 113578 99999999998654
No 313
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=80.26 E-value=2.2 Score=25.83 Aligned_cols=32 Identities=31% Similarity=0.320 Sum_probs=18.6
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccC
Q psy5780 17 WSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAK 53 (106)
Q Consensus 17 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 53 (106)
++||+|++. ..+-...+.+.++...+ +.+||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~v-Vp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPV-VPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EE-EEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCce-eeccHH
Confidence 589999753 34455666666646778 899974
No 314
>PTZ00258 GTP-binding protein; Provisional
Probab=78.80 E-value=3 Score=30.77 Aligned_cols=46 Identities=13% Similarity=-0.054 Sum_probs=27.2
Q ss_pred CCCeEEEEEecC--CCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCC
Q psy5780 10 SAHDSRVWSNKC--DLESEREVDFNEAEEMGEYVPEIHYVMETSAKDST 56 (106)
Q Consensus 10 ~~ip~ilv~nK~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 56 (106)
...|+++|.|+. |+.............++...++..+ +.+||+...
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~-v~~sa~~E~ 266 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPI-IPYSAEFEE 266 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeE-EEeeHHHHH
Confidence 357999999999 7621111122333444444413678 899986554
No 315
>KOG0090|consensus
Probab=78.50 E-value=7 Score=26.76 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=18.7
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+.| .+.|++++ +++++-+++.+.
T Consensus 215 V~F-~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 215 VTF-AEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred eEE-eecccCcC-ChHHHHHHHHHh
Confidence 457 88999888 899999888764
No 316
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=78.06 E-value=4.3 Score=29.13 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=26.1
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHhhh-cCCcceEEEcccCCCCCHHHHH
Q psy5780 15 RVWSNKCDLESEREVDFNEAEEMGEY-VPEIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 15 ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~lf 62 (106)
+||.||+||.+... .+........ .+..++ +.++. ......+++
T Consensus 149 ~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i-~~~~~-~~~~~~~ll 193 (323)
T COG0523 149 VIVLNKTDLVDAEE--LEALEARLRKLNPRARI-IETSY-GDVDLAELL 193 (323)
T ss_pred EEEEecccCCCHHH--HHHHHHHHHHhCCCCeE-EEccc-cCCCHHHhh
Confidence 67899999986543 3333444333 456778 88776 344444443
No 317
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=77.17 E-value=5.1 Score=31.53 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=14.1
Q ss_pred CCCeEEEEEecCCCCC
Q psy5780 10 SAHDSRVWSNKCDLES 25 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~ 25 (106)
.++|+++|+||+|+..
T Consensus 126 ~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 126 YEVPRIAFVNKMDKTG 141 (689)
T ss_pred cCCCEEEEEECCCCCC
Confidence 5789999999999874
No 318
>KOG0458|consensus
Probab=76.89 E-value=2.8 Score=32.48 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=30.6
Q ss_pred eEEEEEecCCCCCCCCCCHHH----HHHHh-hhc----CCcceEEEcccCCCCCHHHH
Q psy5780 13 DSRVWSNKCDLESEREVDFNE----AEEMG-EYV----PEIHYVMETSAKDSTNVEEA 61 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~~~~----~~~~~-~~~----~~~~~~~~~Sa~~~~~v~~l 61 (106)
.+|++.||.|+.+..+-..++ ...|. +.. ..+.| +.+|+.+|+|+...
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~F-IPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKF-IPISGLSGENLIKI 373 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcce-EecccccCCccccc
Confidence 678889999998654322222 22233 222 12479 99999999997543
No 319
>KOG0082|consensus
Probab=76.70 E-value=7.1 Score=28.47 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCCeEEEEEecCCCCCC--------------CC-CCHHHHHHHhhh-----c----CCcceEEEcccCCCCCHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESE--------------RE-VDFNEAEEMGEY-----V----PEIHYVMETSAKDSTNVEEAFYCL 65 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~--------------~~-~~~~~~~~~~~~-----~----~~~~~~~~~Sa~~~~~v~~lf~~l 65 (106)
.+.++||..||.||..+ .. -..+.+..+... . ..+.+ ..|.|.+-.+|+.+|..+
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~-h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYV-HFTCATDTQNVQFVFDAV 339 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceE-EEEeeccHHHHHHHHHHH
Confidence 36899999999999432 11 122333332211 1 12334 677899999999999999
Q ss_pred HHHHHHhh
Q psy5780 66 ANELKNRQ 73 (106)
Q Consensus 66 ~~~i~~~~ 73 (106)
.+.+....
T Consensus 340 ~d~Ii~~n 347 (354)
T KOG0082|consen 340 TDTIIQNN 347 (354)
T ss_pred HHHHHHHH
Confidence 88887653
No 320
>KOG1486|consensus
Probab=76.59 E-value=10 Score=26.84 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=38.7
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
-++-+.|.||+| +++.++...++... .- +-+|+....|++.+++.+-+.+.
T Consensus 238 Y~~ClYvYnKID-----~vs~eevdrlAr~P-ns---vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 238 YIKCLYVYNKID-----QVSIEEVDRLARQP-NS---VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEEeeccc-----eecHHHHHHHhcCC-Cc---EEEEeccccCHHHHHHHHHHHhc
Confidence 367889999999 45677777777765 32 55788889999999988876654
No 321
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=76.35 E-value=12 Score=29.00 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=39.0
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcc--cCCCCCHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETS--AKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~lf~~l~~~i~ 70 (106)
..-++|++++.||.|+..+. ..+..+++++.. ++++ ..+. ++-|.|--++-..+++.+.
T Consensus 369 r~FGvPvVVAINKFd~DTe~--Ei~~I~~~c~e~-Gv~v-a~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 369 RKFGVPVVVAINKFVTDTDA--EIAALKELCEEL-GVEV-ALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHcCCCEEEEEeCCCCCCHH--HHHHHHHHHHHc-CCCE-EEecccccCCcchHHHHHHHHHHHh
Confidence 34689999999999975332 234567788887 7776 5332 5666676666666655544
No 322
>KOG1707|consensus
Probab=75.82 E-value=4.7 Score=31.35 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=35.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcc-eEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIH-YVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
..+|.++|+.|+||.+..+...-+..+++.++ +++ - +..|.+.... .++|..|+...
T Consensus 525 ~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~-~i~~P-~~~S~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 525 YKIPCLMVATKADLDEVPQRYSIQPDEFCRQL-GLPPP-IHISSKTLSS-NELFIKLATMA 582 (625)
T ss_pred cCCceEEEeeccccchhhhccCCChHHHHHhc-CCCCC-eeeccCCCCC-chHHHHHHHhh
Confidence 68999999999999754322222225667776 542 3 4455554333 68888887554
No 323
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=75.77 E-value=3 Score=31.83 Aligned_cols=59 Identities=19% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCCeEEEEEecCCCCCCCC--CCHHHHHHHh-------hhcCCcceEEEcccCCCC----------CHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESERE--VDFNEAEEMG-------EYVPEIHYVMETSAKDST----------NVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~Sa~~~~----------~v~~lf~~l~~~i~ 70 (106)
.+.+.|+|.||+|-+..+. +-.+ ...+. ++. ..++ +-.|+..|. +...||+.|.+.++
T Consensus 119 ~gL~PIVVvNKiDrp~Arp~~Vvd~-vfDLf~~L~A~deQL-dFPi-vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 119 LGLKPIVVINKIDRPDARPDEVVDE-VFDLFVELGATDEQL-DFPI-VYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred cCCCcEEEEeCCCCCCCCHHHHHHH-HHHHHHHhCCChhhC-CCcE-EEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 4678899999999875442 1111 11221 223 4567 777876654 35667777766664
Q ss_pred H
Q psy5780 71 N 71 (106)
Q Consensus 71 ~ 71 (106)
.
T Consensus 196 ~ 196 (603)
T COG1217 196 A 196 (603)
T ss_pred C
Confidence 3
No 324
>KOG2486|consensus
Probab=75.27 E-value=0.99 Score=32.00 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=35.9
Q ss_pred cCCCCCeEEEEEecCCCCCCCC----CCHHHHHH-H---hhhc--CCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 7 WPDSAHDSRVWSNKCDLESERE----VDFNEAEE-M---GEYV--PEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~----~~~~~~~~-~---~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
+.+.++|+.+|.||+|-..... ........ + .... ...++ +.+|+.++.|++.|...++.
T Consensus 244 ~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw-~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 244 LGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPW-IYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred HhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCc-eeeecccccCceeeeeehhh
Confidence 3557899999999999642111 00111111 1 1110 12467 77999999999988776653
No 325
>KOG2484|consensus
Probab=73.76 E-value=5.1 Score=29.82 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.0
Q ss_pred CCCeEEEEEecCCCCCC
Q psy5780 10 SAHDSRVWSNKCDLESE 26 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~ 26 (106)
.+...|||.||+||.+.
T Consensus 176 gnKkLILVLNK~DLVPr 192 (435)
T KOG2484|consen 176 GNKKLILVLNKIDLVPR 192 (435)
T ss_pred CCceEEEEeehhccCCH
Confidence 45789999999999753
No 326
>KOG0705|consensus
Probab=73.61 E-value=5.7 Score=31.00 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=43.9
Q ss_pred CCCCeEEEEEecCCCC--CCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 9 DSAHDSRVWSNKCDLE--SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
...+|+++|+++--.. ..+.+....+..+...+....+ |+++|.+|.+++..|..++..+....
T Consensus 127 r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy-~et~atyGlnv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 127 ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSY-YETCATYGLNVERVFQEVAQKIVQLR 192 (749)
T ss_pred cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccce-eecchhhhhhHHHHHHHHHHHHHHHH
Confidence 4568888888874332 1223344444544444426788 99999999999999999987766553
No 327
>PRK00007 elongation factor G; Reviewed
Probab=73.53 E-value=7.4 Score=30.72 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=14.4
Q ss_pred CCCCeEEEEEecCCCCC
Q psy5780 9 DSAHDSRVWSNKCDLES 25 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~ 25 (106)
..++|.|++.||+|+..
T Consensus 125 ~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 125 KYKVPRIAFVNKMDRTG 141 (693)
T ss_pred HcCCCEEEEEECCCCCC
Confidence 35789999999999875
No 328
>KOG0463|consensus
Probab=73.39 E-value=8.4 Score=28.83 Aligned_cols=60 Identities=17% Similarity=0.033 Sum_probs=35.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHH---HHHhhhc----------------------C---CcceEEEcccCCCCCHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEA---EEMGEYV----------------------P---EIHYVMETSAKDSTNVEEA 61 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~---~~~~~~~----------------------~---~~~~~~~~Sa~~~~~v~~l 61 (106)
..+|+.+|.+|+|+-... +..+.+ ..+.+.. + -.++ |.+|-.+|+|++-+
T Consensus 272 L~VPVfvVVTKIDMCPAN-iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPI-FQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPAN-ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPI-FQVSNVTGTNLPLL 349 (641)
T ss_pred hcCcEEEEEEeeccCcHH-HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccce-EEeccccCCChHHH
Confidence 579999999999986422 111111 1121111 0 1467 99999999998644
Q ss_pred HHHHHHHHHHh
Q psy5780 62 FYCLANELKNR 72 (106)
Q Consensus 62 f~~l~~~i~~~ 72 (106)
..+...+.-+
T Consensus 350 -kmFLNlls~R 359 (641)
T KOG0463|consen 350 -KMFLNLLSLR 359 (641)
T ss_pred -HHHHhhcCcc
Confidence 3444444433
No 329
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=71.92 E-value=3.4 Score=27.16 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=12.0
Q ss_pred CCCCeEEEEEecCCCCC
Q psy5780 9 DSAHDSRVWSNKCDLES 25 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~ 25 (106)
...+|++++.||.|+..
T Consensus 110 ~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 110 KNKPPILIACNKQDLFT 126 (181)
T ss_dssp TT--EEEEEEE-TTSTT
T ss_pred cCCCCEEEEEeCccccc
Confidence 46799999999999864
No 330
>KOG1487|consensus
Probab=71.74 E-value=2.7 Score=29.79 Aligned_cols=51 Identities=20% Similarity=0.033 Sum_probs=34.1
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
-+|-+.+.||+|-. +.++..- .+..... ..+||-++.|++++++.+-+.+.
T Consensus 231 yVp~iyvLNkIdsI-----SiEELdi---i~~ipha-vpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSI-----SIEELDI---IYTIPHA-VPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred eeeeeeeeccccee-----eeeccce---eeeccce-eecccccccchHHHHHHHhhcch
Confidence 58999999999932 2222111 1102245 78999999999999887765443
No 331
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=71.47 E-value=6.6 Score=26.92 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=22.7
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++ |..||+++.|++.+++.+.+.++
T Consensus 241 ~pv-~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 241 VPV-LCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred EEE-EEeeCCCCcCHHHHHHHHHHhCC
Confidence 578 99999999999999999887653
No 332
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=66.28 E-value=8.8 Score=27.75 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=23.9
Q ss_pred CCCeE-EEEEecCCCCCCCCCCH---HHHHHHhhhc--C--CcceEEEcccC
Q psy5780 10 SAHDS-RVWSNKCDLESEREVDF---NEAEEMGEYV--P--EIHYVMETSAK 53 (106)
Q Consensus 10 ~~ip~-ilv~nK~Dl~~~~~~~~---~~~~~~~~~~--~--~~~~~~~~Sa~ 53 (106)
-++|. +++.||+|+.++..... .+.+++...+ + ..++ +.-||+
T Consensus 126 vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pi-i~gSal 176 (394)
T COG0050 126 VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPI-IRGSAL 176 (394)
T ss_pred cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcce-eechhh
Confidence 45655 45589999987543211 1234455555 1 2356 666764
No 333
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=64.86 E-value=9.4 Score=29.26 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.9
Q ss_pred CCCeEEEEEecCCCCC
Q psy5780 10 SAHDSRVWSNKCDLES 25 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~ 25 (106)
.++|+++++||+|+..
T Consensus 131 ~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 131 RDTPIFTFMNKLDRDI 146 (527)
T ss_pred cCCCEEEEEECccccC
Confidence 5789999999999863
No 334
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=63.14 E-value=13 Score=27.37 Aligned_cols=43 Identities=12% Similarity=-0.023 Sum_probs=27.9
Q ss_pred CCCeEEEEEecCCCCCCCCC-CHHHHHHHhhhcCCcceEEEcccCC
Q psy5780 10 SAHDSRVWSNKCDLESEREV-DFNEAEEMGEYVPEIHYVMETSAKD 54 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~ 54 (106)
...|+++|+||.|......- -......+.+.. +..+ +.+||+.
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~-~~~v-V~~sA~~ 248 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAKE-NAEV-VPVSAAI 248 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhhc-CCcE-EEeeHHH
Confidence 45799999999997543210 023445555655 6678 8888753
No 335
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=63.00 E-value=28 Score=22.50 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=34.1
Q ss_pred CeEEEEEecCCCCCCCCCC------HHHHHHHhhhcCCcce-EEEc---ccCCCCCHHHHHHHHHHHHHHh
Q psy5780 12 HDSRVWSNKCDLESEREVD------FNEAEEMGEYVPEIHY-VMET---SAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~-~~~~---Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++++|.|+.|-.....+. ........+.. +..+ .|.- ++..+.++.+|+..+.+.+.+.
T Consensus 117 ~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c-~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC-GGRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred hcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh-CCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 4678889999954322111 12334444444 3233 0321 2566778888888888877764
No 336
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=61.33 E-value=6.3 Score=27.05 Aligned_cols=19 Identities=21% Similarity=0.069 Sum_probs=14.6
Q ss_pred CCCCCeEEEEEecCCCCCC
Q psy5780 8 PDSAHDSRVWSNKCDLESE 26 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~ 26 (106)
...+.++++|.||.|..++
T Consensus 189 d~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 189 DPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHcCCcEEEEEECCCCCCc
Confidence 3356799999999998653
No 337
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=54.89 E-value=12 Score=25.99 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.7
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++ |..||.++.|+..+++.+.+.++
T Consensus 243 ~PV-~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 243 VPV-LCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred EEE-EeCcCCCCcCHHHHHHHHHHhcC
Confidence 578 99999999999999999887654
No 338
>KOG0410|consensus
Probab=54.85 E-value=19 Score=26.44 Aligned_cols=47 Identities=21% Similarity=0.136 Sum_probs=29.9
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 14 SRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 14 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+|=|-||+|..+.. ... +.+ + . +.+||++|.|.+++...+-..+...
T Consensus 297 mieVdnkiD~e~~~-~e~-------E~n-~--~-v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 297 MIEVDNKIDYEEDE-VEE-------EKN-L--D-VGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred HHhhcccccccccc-Ccc-------ccC-C--c-cccccccCccHHHHHHHHHHHhhhh
Confidence 45567888865322 111 222 2 5 7889999999999987775555433
No 339
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=54.64 E-value=12 Score=25.97 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=22.9
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++ |--||.++.||..|++.|.+.++
T Consensus 240 ~Pv-~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 240 TPV-FFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred EEE-EecccccCcCHHHHHHHHHHHCC
Confidence 578 99999999999999999987664
No 340
>KOG0074|consensus
Probab=51.26 E-value=5.5 Score=25.65 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=34.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHh-----hhcCCcceEEEcccCCCCCHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMG-----EYVPEIHYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
..+|+++..||-|+..... .++...-. +.. .+.+ .++||.+++++.+-..++.
T Consensus 118 ~~vpvlIfankQdlltaa~--~eeia~klnl~~lrdR-swhI-q~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 118 AEVPVLIFANKQDLLTAAK--VEEIALKLNLAGLRDR-SWHI-QECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred hccceeehhhhhHHHhhcc--hHHHHHhcchhhhhhc-eEEe-eeCccccccCccCcchhhh
Confidence 4689999999999864322 22211111 111 3456 7899999999888777664
No 341
>KOG1249|consensus
Probab=49.46 E-value=6.7 Score=30.24 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.7
Q ss_pred EEcccCCCCCHHHHHHHHHHHHH
Q psy5780 48 METSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 48 ~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
..+|++++.|++++...++...-
T Consensus 189 ~~~r~ktgyg~eeLI~~lvd~~d 211 (572)
T KOG1249|consen 189 DLIRAKTGYGIEELIVMLVDIVD 211 (572)
T ss_pred hhhhhhhcccHHHHHHHhhheee
Confidence 57889999999999888876543
No 342
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=49.40 E-value=9.4 Score=28.89 Aligned_cols=42 Identities=17% Similarity=0.106 Sum_probs=29.0
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEccc
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSA 52 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 52 (106)
+..-+.|++++.|-.+-.. ..+.+.+..+.+++ +.++ +.+++
T Consensus 176 Lk~igKPFvillNs~~P~s--~et~~L~~eL~ekY-~vpV-lpvnc 217 (492)
T PF09547_consen 176 LKEIGKPFVILLNSTKPYS--EETQELAEELEEKY-DVPV-LPVNC 217 (492)
T ss_pred HHHhCCCEEEEEeCCCCCC--HHHHHHHHHHHHHh-CCcE-EEeeh
Confidence 4456789999999987432 22344556677778 8888 77765
No 343
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=47.01 E-value=27 Score=23.87 Aligned_cols=61 Identities=25% Similarity=0.200 Sum_probs=34.7
Q ss_pred CCCCeEEEEEecCCCCCCCC---CCH---HHHHHHhhhcCC---cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESERE---VDF---NEAEEMGEYVPE---IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~---~~~---~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.|++.+-+..+|+|+..+.. +.. +......... + +.+ +.||--+ ..+-+.|..++..+.-+
T Consensus 109 sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~-~~~~~~~-~~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 109 SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDL-GIEDITF-FLTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHT-T-TSEEE-EEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhc-cccceEE-EeccCcC-cHHHHHHHHHHHHHccc
Confidence 47889999999999864211 000 1112222233 3 678 9999876 57888888877665544
No 344
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=46.06 E-value=57 Score=20.58 Aligned_cols=33 Identities=30% Similarity=0.145 Sum_probs=19.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcce
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHY 46 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 46 (106)
.++|+.+|.||+|.... ......++.+.+ ++++
T Consensus 142 ~~~~~~vV~N~~~~~~~---~~~~~~~~~~~~-~~~v 174 (179)
T cd03110 142 FGIPVGVVINKYDLNDE---IAEEIEDYCEEE-GIPI 174 (179)
T ss_pred cCCCEEEEEeCCCCCcc---hHHHHHHHHHHc-CCCe
Confidence 35667788888885421 233455566666 6555
No 345
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=44.99 E-value=30 Score=25.37 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=27.6
Q ss_pred CCCeEEEEEecCCCC-CCCCCCHHHHHHHhhhcCCcceEEEcccCCCC
Q psy5780 10 SAHDSRVWSNKCDLE-SEREVDFNEAEEMGEYVPEIHYVMETSAKDST 56 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 56 (106)
...|+++|+|+.|.. .....-.+....+.... +..+ +.+||+...
T Consensus 198 t~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~-~~~~-i~~sa~~E~ 243 (364)
T PRK09601 198 TAKPVLYVANVDEDDLADGNPYVKKVREIAAKE-GAEV-VVICAKIEA 243 (364)
T ss_pred ccCCeEEEEECCccccccccHHHHHHHHHHHHc-CCeE-EEEEHHHHH
Confidence 357999999999841 11111223345555566 7778 888875433
No 346
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=44.02 E-value=52 Score=20.47 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=25.3
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+.+ +++||.+++.+.+.+..+++.+.+...
T Consensus 97 v~~-~wiSa~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 97 VRV-LWISAAEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred EEE-EEEehhhHHHHHHHHHHHHHHHHHhCC
Confidence 468 999999999999999999888876643
No 347
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=42.76 E-value=21 Score=27.38 Aligned_cols=28 Identities=11% Similarity=-0.074 Sum_probs=24.8
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++ |.-||.++.||..+++.+++.++.-
T Consensus 250 ~PV-~~GSA~~n~Gv~~LLd~i~~~~PsP 277 (527)
T TIGR00503 250 TPV-FFGTALGNFGVDHFLDGLLQWAPKP 277 (527)
T ss_pred eEE-EEeecccCccHHHHHHHHHHHCCCC
Confidence 578 8999999999999999999988744
No 348
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=40.72 E-value=12 Score=24.03 Aligned_cols=11 Identities=45% Similarity=0.344 Sum_probs=7.6
Q ss_pred EEEEecCCCCC
Q psy5780 15 RVWSNKCDLES 25 (106)
Q Consensus 15 ilv~nK~Dl~~ 25 (106)
++|.||+|+.+
T Consensus 145 vIvlnK~D~~~ 155 (178)
T PF02492_consen 145 VIVLNKIDLVS 155 (178)
T ss_dssp EEEEE-GGGHH
T ss_pred EEEEeccccCC
Confidence 67789999864
No 349
>PTZ00416 elongation factor 2; Provisional
Probab=40.67 E-value=7.1 Score=31.58 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=13.4
Q ss_pred CCCeEEEEEecCCCC
Q psy5780 10 SAHDSRVWSNKCDLE 24 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~ 24 (106)
.++|+|++.||+|+.
T Consensus 143 ~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 143 ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCEEEEEEChhhh
Confidence 578999999999985
No 350
>KOG0085|consensus
Probab=39.64 E-value=58 Score=22.91 Aligned_cols=63 Identities=25% Similarity=0.288 Sum_probs=38.2
Q ss_pred CCCeEEEEEecCCCCCCC----------------CCCHHHHHHHhh-----hcCC---cceEEEcccCCCCCHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER----------------EVDFNEAEEMGE-----YVPE---IHYVMETSAKDSTNVEEAFYCL 65 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~----------------~~~~~~~~~~~~-----~~~~---~~~~~~~Sa~~~~~v~~lf~~l 65 (106)
.+.++|+..||.||.++. +-..+.+.+|.- ..|. +-++..|.|.+-+|+.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 467899999999985431 111222333321 1111 1121457788999999999888
Q ss_pred HHHHHHh
Q psy5780 66 ANELKNR 72 (106)
Q Consensus 66 ~~~i~~~ 72 (106)
...+.+.
T Consensus 345 kDtiLq~ 351 (359)
T KOG0085|consen 345 KDTILQL 351 (359)
T ss_pred HHHHHHh
Confidence 8777665
No 351
>KOG4102|consensus
Probab=38.86 E-value=11 Score=23.08 Aligned_cols=8 Identities=38% Similarity=1.070 Sum_probs=6.2
Q ss_pred CCCCCccC
Q psy5780 99 SIRNKCNC 106 (106)
Q Consensus 99 ~~~~~CcC 106 (106)
.+++.|||
T Consensus 59 rkKSKcCC 66 (121)
T KOG4102|consen 59 RKKSKCCC 66 (121)
T ss_pred ccccceeE
Confidence 45888988
No 352
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=35.43 E-value=16 Score=26.62 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=12.0
Q ss_pred CCCeEEEEEecCCCC
Q psy5780 10 SAHDSRVWSNKCDLE 24 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~ 24 (106)
.+.|+||+.||.|+.
T Consensus 302 ~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 302 KNTPIILFLNKIDLF 316 (389)
T ss_dssp TTSEEEEEEE-HHHH
T ss_pred ccCceEEeeecHHHH
Confidence 368999999999973
No 353
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=35.36 E-value=28 Score=28.30 Aligned_cols=16 Identities=19% Similarity=-0.028 Sum_probs=13.9
Q ss_pred CCCCeEEEEEecCCCC
Q psy5780 9 DSAHDSRVWSNKCDLE 24 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~ 24 (106)
..++|+|++.||+|..
T Consensus 148 ~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 148 GERIRPVLTVNKMDRC 163 (843)
T ss_pred HCCCCEEEEEECCccc
Confidence 4578999999999976
No 354
>KOG3929|consensus
Probab=35.06 E-value=26 Score=25.01 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=13.6
Q ss_pred CCCeEEEEEecCCCCC
Q psy5780 10 SAHDSRVWSNKCDLES 25 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~ 25 (106)
-.+|+++||.|.|...
T Consensus 189 ~P~PV~IVgsKYDvFq 204 (363)
T KOG3929|consen 189 FPVPVVIVGSKYDVFQ 204 (363)
T ss_pred CCCceEEeccchhhhc
Confidence 4689999999999753
No 355
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=33.92 E-value=65 Score=23.02 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=18.4
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHhhh-cCCcceEEEcc
Q psy5780 15 RVWSNKCDLESEREVDFNEAEEMGEY-VPEIHYVMETS 51 (106)
Q Consensus 15 ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 51 (106)
++|.||+|+.+.. +......+. .+...+ +.++
T Consensus 154 ~IvlnK~Dl~~~~----~~~~~~l~~lnp~a~i-~~~~ 186 (318)
T PRK11537 154 RILLTKTDVAGEA----EKLRERLARINARAPV-YTVV 186 (318)
T ss_pred EEEEeccccCCHH----HHHHHHHHHhCCCCEE-EEec
Confidence 6788999987532 233333333 445566 6554
No 356
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=33.68 E-value=48 Score=17.97 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=15.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHh
Q psy5780 51 SAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 51 Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+|++|.||.++++...+...+.
T Consensus 44 tAknGgNvKEvme~~lr~~l~~ 65 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKLKS 65 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHHH
Confidence 6999999999887766655443
No 357
>PF07491 PPI_Ypi1: Protein phosphatase inhibitor ; InterPro: IPR011107 These proteins include Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor [] and ppp1r11/hcgv (O60927 from SWISSPROT), annotated as having protein phosphatase inhibitor activity [].
Probab=32.91 E-value=26 Score=18.88 Aligned_cols=9 Identities=33% Similarity=0.922 Sum_probs=6.0
Q ss_pred CCCCCCccC
Q psy5780 98 KSIRNKCNC 106 (106)
Q Consensus 98 ~~~~~~CcC 106 (106)
..+++.|||
T Consensus 32 gkkkSK~CC 40 (60)
T PF07491_consen 32 GKKKSKCCC 40 (60)
T ss_pred ccccCceee
Confidence 345777887
No 358
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=31.78 E-value=1.1e+02 Score=22.05 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=23.9
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHhhh-cCC-cceEEEcccCCCCCHHHHHH
Q psy5780 15 RVWSNKCDLESEREVDFNEAEEMGEY-VPE-IHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 15 ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~-~~~~~~~Sa~~~~~v~~lf~ 63 (106)
++|.||+|+.+... .+......+. .+. ..+ ++++- .......+|.
T Consensus 177 ~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i-~~~~~-~~v~~~~ll~ 223 (341)
T TIGR02475 177 LVILNKADLLDAAG--LARVRAEIAAELPRAVKI-VEASH-GEVDARVLLG 223 (341)
T ss_pred EEEEeccccCCHHH--HHHHHHHHHHhCCCCCEE-EEccc-CCCCHHHHhC
Confidence 67889999875432 2233333333 323 356 66542 3345555554
No 359
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=31.49 E-value=31 Score=27.52 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.4
Q ss_pred CCCCeEEEEEecCCCC
Q psy5780 9 DSAHDSRVWSNKCDLE 24 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~ 24 (106)
..++|.++++||+|..
T Consensus 136 ~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 136 KENVKPVLFINKVDRL 151 (720)
T ss_pred HcCCCEEEEEEChhcc
Confidence 3568899999999975
No 360
>TIGR03790 conserved hypothetical protein TIGR03790. Despite a broad and sporadic distribution (Cyanobacteria, Verrucomicrobia, Acidobacteria, beta and delta Proteobacteria, and Planctomycetes), this uncharacterized protein family occurs only among the roughly 8 percent of prokarotyic species that carry homologs of the integral membrane protein exosortase (see TIGR02602), a proposed protein-sorting system transpeptidase.
Probab=29.93 E-value=2.2e+02 Score=20.67 Aligned_cols=53 Identities=21% Similarity=0.180 Sum_probs=34.4
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHhhhcCCcc---e-EEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 14 SRVWSNKCDLESEREVDFNEAEEMGEYVPEIH---Y-VMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 14 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~-~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
++||.|+.|- .+.+.++.+++.. +++ + .+.++-+....-.+.|+.|...+.+.
T Consensus 3 v~Vv~N~~dp-----~Sv~ia~yYa~~R-~IP~~nii~L~~p~~e~i~~~ef~~~I~~pl~~~ 59 (316)
T TIGR03790 3 VAVVVNGADP-----ESVQIARYYAEKR-GIPEENLITLDLPPKETISREEFFQQIKEPLRAY 59 (316)
T ss_pred EEEEEcCCCh-----hHHHHHHHHHHHc-CCCHHHEEEEECCCccccccHHHHHHHHHHHHHH
Confidence 6788999883 3456677777765 543 3 14444455555677778887777766
No 361
>COG3596 Predicted GTPase [General function prediction only]
Probab=29.25 E-value=1.1e+02 Score=21.98 Aligned_cols=63 Identities=8% Similarity=-0.031 Sum_probs=40.4
Q ss_pred CCCeEEEEEecCCCCCCC--------CCCHHHHHHHh--------hhc-CCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESER--------EVDFNEAEEMG--------EYV-PEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~--------~~~~~~~~~~~--------~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
-+.+++++.|-+|...+. ..... ...+. +.. +-.++ +..+...+.|++.+...+++.++..
T Consensus 147 ~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a-~~qfi~~k~~~~~~~~q~V~pV-~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 147 LDKRVLFVVTQADRAEPGREWDSAGHQPSPA-IKQFIEEKAEALGRLFQEVKPV-VAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred cCceeEEEEehhhhhccccccccccCCCCHH-HHHHHHHHHHHHHHHHhhcCCe-EEeccccCccHHHHHHHHHHhCccc
Confidence 347999999999975431 11111 11111 111 12356 7778899999999999999988866
Q ss_pred hc
Q psy5780 73 QS 74 (106)
Q Consensus 73 ~~ 74 (106)
..
T Consensus 225 ~r 226 (296)
T COG3596 225 AR 226 (296)
T ss_pred cc
Confidence 54
No 362
>PF15260 FAM219A: Protein family FAM219A
Probab=29.16 E-value=1.5e+02 Score=18.43 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCCCeeeCCCCCCCCCCccC
Q psy5780 60 EAFYCLANELKNRQSATLCNEPINTDNTNSPITLSNDTKSIRNKCNC 106 (106)
Q Consensus 60 ~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~CcC 106 (106)
++-..|.+.+++-.- .-.-.+..+.++|-++..-.++.|||
T Consensus 76 q~~q~l~~QLlkDGy------~LDE~pDdEdLDLIPPk~~~~~~~~C 116 (125)
T PF15260_consen 76 QVNQDLSQQLLKDGY------RLDEIPDDEDLDLIPPKPVSSSCCCC 116 (125)
T ss_pred HHhHHHHHHHHhccc------ccccCCchhccccCCCcccccccccc
Confidence 444566666655432 11112222667776443333554555
No 363
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=29.01 E-value=49 Score=23.20 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=26.1
Q ss_pred CCeEEEEEecCC--CCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCH
Q psy5780 11 AHDSRVWSNKCD--LESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNV 58 (106)
Q Consensus 11 ~ip~ilv~nK~D--l~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 58 (106)
..|+++|+|+.| +..... .......+.... +..+ +.+||+.-..+
T Consensus 195 ~KP~i~v~N~~e~d~~~~~~-~~~~~~~~~~~~-~~~~-i~~sa~~E~eL 241 (274)
T cd01900 195 AKPVLYVANVSEDDLANGNN-KVLKVREIAAKE-GAEV-IPISAKIEAEL 241 (274)
T ss_pred cCCceeecccCHHHhccccH-HHHHHHHHHhcC-CCeE-EEeeHHHHHHH
Confidence 369999999988 321111 112223344455 6778 99998544433
No 364
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=28.71 E-value=1.1e+02 Score=21.84 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=20.7
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcce
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHY 46 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 46 (106)
..++|..+|.||.++.. + +.++++... ++++
T Consensus 212 ~f~ip~~iViNr~~~g~----s--~ie~~~~e~-gi~i 242 (284)
T COG1149 212 HFGIPTGIVINRYNLGD----S--EIEEYCEEE-GIPI 242 (284)
T ss_pred HhCCceEEEEecCCCCc----h--HHHHHHHHc-CCCe
Confidence 35789999999996532 2 456666666 5554
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=28.32 E-value=94 Score=21.64 Aligned_cols=42 Identities=5% Similarity=-0.046 Sum_probs=24.5
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHH
Q psy5780 14 SRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 14 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 63 (106)
.-+|.||.|-.... .......... +.++ ..++ +|++++++-.
T Consensus 220 ~g~IlTKlDe~~~~----G~~l~~~~~~-~~Pi-~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 220 TGIILTKLDGTAKG----GIILSIAYEL-KLPI-KFIG--VGEKIDDLAP 261 (272)
T ss_pred CEEEEEccCCCCCc----cHHHHHHHHH-CcCE-EEEe--CCCChHhCcc
Confidence 46778999864322 2233344455 5666 5555 7888877643
No 366
>KOG4271|consensus
Probab=26.62 E-value=90 Score=26.14 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=27.0
Q ss_pred CcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 43 EIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 43 ~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++ +|||+..+.||+-+|..|+..+.+..+
T Consensus 3 ~l~~-vetss~~nvnve~~f~tl~~l~~ksr~ 33 (1100)
T KOG4271|consen 3 NLPV-VETSSVKNVNVEYLFGTLVQLCDKSRK 33 (1100)
T ss_pred CCCc-eeecccccccHHHHHHHHHHHHHhhcc
Confidence 4567 999999999999999999998887655
No 367
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=26.26 E-value=21 Score=28.49 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=14.2
Q ss_pred CCCCCeEEEEEecCCCC
Q psy5780 8 PDSAHDSRVWSNKCDLE 24 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~ 24 (106)
...++|.+++.||+|-.
T Consensus 125 ~~~~vp~i~fiNKmDR~ 141 (697)
T COG0480 125 DKYGVPRILFVNKMDRL 141 (697)
T ss_pred hhcCCCeEEEEECcccc
Confidence 44689999999999964
No 368
>PRK07560 elongation factor EF-2; Reviewed
Probab=26.23 E-value=42 Score=26.82 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=12.6
Q ss_pred CCCeEEEEEecCCCC
Q psy5780 10 SAHDSRVWSNKCDLE 24 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~ 24 (106)
.++|.|++.||+|+.
T Consensus 138 ~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 138 ERVKPVLFINKVDRL 152 (731)
T ss_pred cCCCeEEEEECchhh
Confidence 467889999999975
No 369
>PRK14974 cell division protein FtsY; Provisional
Probab=25.86 E-value=1.4e+02 Score=21.62 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=24.7
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHH
Q psy5780 14 SRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 14 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 63 (106)
--++.||.|...... .+....... +.++ ..++ +|++++++..
T Consensus 282 ~giIlTKlD~~~~~G----~~ls~~~~~-~~Pi-~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 282 DGVILTKVDADAKGG----AALSIAYVI-GKPI-LFLG--VGQGYDDLIP 323 (336)
T ss_pred CEEEEeeecCCCCcc----HHHHHHHHH-CcCE-EEEe--CCCChhhccc
Confidence 356789999653322 223333344 5666 5555 7999988753
No 370
>KOG0459|consensus
Probab=25.31 E-value=1.4e+02 Score=22.80 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=29.2
Q ss_pred eEEEEEecCCCCCCCCC--C----HHHHHHHhhhc-----CCcceEEEcccCCCCCHHHHH
Q psy5780 13 DSRVWSNKCDLESEREV--D----FNEAEEMGEYV-----PEIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~--~----~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~lf 62 (106)
-.|++.||.|-+....- - .+....+.... +...| +.+|..+|.++.+..
T Consensus 219 ~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f-~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 219 HLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHF-VPVSGLTGANVKDRT 278 (501)
T ss_pred eEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCcee-eecccccccchhhcc
Confidence 46788999997632210 0 11122232221 23568 999999999987754
No 371
>PF07846 Metallothio_Cad: Metallothionein family; InterPro: IPR012484 The sequence making up family 7 of the metallothionein superfamily are found repeated in metallothionein proteins expressed by two Tetrahymena species. Metallothioneins are low molecular mass, cysteine-rich metal-binding proteins that are thought to be involved in the regulation of levels of trace metals, and detoxification of these metals when present in excess []. Some of the metallothioneins found in this family (for example, Q8T6B3 from SWISSPROT) are known to be induced by cadmium and are thought to be involved in the cellular sequestration of toxic metal ions. The high proportion of cysteine residues allows the metal ions to be bound by the formation of clusters of metal-thiolate complexes []. Tetrahymena spp. metallothioneins differ from other eukaryotic metallothioneins mainly in the length of their sequences and in the cysteine-containing motifs they exhibit. ; GO: 0046870 cadmium ion binding
Probab=25.16 E-value=35 Score=14.17 Aligned_cols=6 Identities=33% Similarity=1.182 Sum_probs=3.5
Q ss_pred CCCccC
Q psy5780 101 RNKCNC 106 (106)
Q Consensus 101 ~~~CcC 106 (106)
.++|||
T Consensus 15 nsG~~C 20 (21)
T PF07846_consen 15 NSGCCC 20 (21)
T ss_pred CCcccc
Confidence 456665
No 372
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=24.42 E-value=1.7e+02 Score=17.50 Aligned_cols=32 Identities=28% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 34 AEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 34 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.....+.. |+++ +.++.....+++++...|.+
T Consensus 93 k~~~l~~a-gipl-ir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 93 KDRVLKKA-GIPL-IRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred HHHHHHHC-CCCE-EEEeCCCCCCHHHHHHHHHH
Confidence 44566777 9999 99999999999888777654
No 373
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=24.11 E-value=1.3e+02 Score=25.57 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=14.1
Q ss_pred CCCCeEEEEEecCCCC
Q psy5780 9 DSAHDSRVWSNKCDLE 24 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~ 24 (106)
+..+|+.||.+|+|+.
T Consensus 241 g~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 241 GARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCCEEEEEecchhh
Confidence 4679999999999975
No 374
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=23.70 E-value=1.8e+02 Score=19.46 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=36.2
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
....+-.++|..|--|. .+..+....+++.+ +..+ ..+-..+..+ ++++.+++..+..
T Consensus 111 ~~~~V~rVvV~ykDRL~---RFGfe~le~~~~a~-~~ei-vvv~~~e~~~-eELveDlisIlts 168 (193)
T COG2452 111 EGNSVRRVVVSYKDRLN---RFGFELVEAVCKAH-NVEI-VVVNQEDKDS-EELVEDLVSILTS 168 (193)
T ss_pred cCCceeEEEEEccchHh---HHhHHHHHHHHHhc-CcEE-EEecCCCCCH-HHHHHHHHHHHHH
Confidence 34566777777664343 23456667777777 7776 6555444444 7888888765543
No 375
>PRK00007 elongation factor G; Reviewed
Probab=23.60 E-value=66 Score=25.58 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=24.5
Q ss_pred CcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 43 EIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 43 ~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+++ +..||.++.||+.+++.+.+.++.=
T Consensus 254 ~~Pv-~~gSa~~~~Gv~~LLd~I~~~lPsP 282 (693)
T PRK00007 254 IVPV-LCGSAFKNKGVQPLLDAVVDYLPSP 282 (693)
T ss_pred EEEE-EecccccCcCHHHHHHHHHHHCCCh
Confidence 3567 8889999999999999999888643
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=23.20 E-value=1.7e+02 Score=20.92 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=25.4
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHH
Q psy5780 14 SRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 14 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 62 (106)
.-+|.||.|-.... .......... +.++ ..++ +|++++++-
T Consensus 262 ~giIlTKlD~t~~~----G~~l~~~~~~-~~Pi-~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 262 TGIILTKLDGTAKG----GVVFAIADEL-GIPI-KFIG--VGEGIDDLQ 302 (318)
T ss_pred CEEEEECCCCCCCc----cHHHHHHHHH-CCCE-EEEe--CCCChhhCc
Confidence 35778999943222 2334445555 6676 6665 788887774
No 377
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=22.51 E-value=70 Score=25.38 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=23.6
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
+++ +.-||.++.|++.|++.|++.++.
T Consensus 254 ~PV-~~gSa~~~~Gv~~LLd~I~~~lPs 280 (689)
T TIGR00484 254 FPV-LCGSAFKNKGVQLLLDAVVDYLPS 280 (689)
T ss_pred EEE-EeccccCCccHHHHHHHHHHHCCC
Confidence 467 888999999999999999998874
No 378
>KOG0460|consensus
Probab=20.99 E-value=1.1e+02 Score=22.80 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=23.4
Q ss_pred CCe-EEEEEecCCCCCCCCC-C--HHHHHHHhhhcC----CcceEEEccc---CCCCC
Q psy5780 11 AHD-SRVWSNKCDLESEREV-D--FNEAEEMGEYVP----EIHYVMETSA---KDSTN 57 (106)
Q Consensus 11 ~ip-~ilv~nK~Dl~~~~~~-~--~~~~~~~~~~~~----~~~~~~~~Sa---~~~~~ 57 (106)
+++ +++..||.|+.++... . .-+++++...++ ..++ +.=|| +.+.+
T Consensus 169 GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~Pv-I~GSAL~ALeg~~ 225 (449)
T KOG0460|consen 169 GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPV-IRGSALCALEGRQ 225 (449)
T ss_pred CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCe-eecchhhhhcCCC
Confidence 344 4455899999754321 1 112344555551 1466 65554 55533
No 379
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=20.76 E-value=1.2e+02 Score=14.94 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=15.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHHh
Q psy5780 51 SAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 51 Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
|..+|.....+++..++.+.++
T Consensus 21 s~~t~i~~S~Ll~eAle~~l~k 42 (44)
T PF12651_consen 21 SEETGIPKSKLLREALEDYLEK 42 (44)
T ss_pred HHHHCCCHHHHHHHHHHHHHHh
Confidence 4556667778888877776654
No 380
>KOG0447|consensus
Probab=20.12 E-value=93 Score=24.82 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=20.4
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHH
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEM 37 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~ 37 (106)
....+-..|+|.+|+||.++...........
T Consensus 475 ~DP~GrRTIfVLTKVDlAEknlA~PdRI~kI 505 (980)
T KOG0447|consen 475 MDPHGRRTIFVLTKVDLAEKNVASPSRIQQI 505 (980)
T ss_pred cCCCCCeeEEEEeecchhhhccCCHHHHHHH
Confidence 3445678899999999986544344444433
No 381
>PRK13695 putative NTPase; Provisional
Probab=20.05 E-value=2.4e+02 Score=17.68 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=25.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
..+.|+|++.+|..+. .......... +..+ +++ +.+|-+++...+.+.+
T Consensus 124 ~~~~~~i~v~h~~~~~-------~~~~~i~~~~-~~~i-~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 124 DSEKPVIATLHRRSVH-------PFVQEIKSRP-GGRV-YEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred hCCCeEEEEECchhhH-------HHHHHHhccC-CcEE-EEE---cchhhhhHHHHHHHHH
Confidence 3456777777764321 1222333333 4455 555 4556666666665544
Done!