Query psy5780
Match_columns 106
No_of_seqs 171 out of 1324
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 17:48:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.8 1.9E-19 6.5E-24 119.4 6.3 64 9-74 116-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 99.6 3.4E-15 1.2E-19 96.8 8.3 64 9-74 111-174 (206)
3 1vg8_A RAS-related protein RAB 99.5 2.7E-14 9.2E-19 92.3 4.1 62 10-74 116-178 (207)
4 2bov_A RAla, RAS-related prote 99.4 1.7E-13 5.8E-18 88.4 6.7 63 10-74 118-180 (206)
5 2g3y_A GTP-binding protein GEM 99.4 8.6E-13 2.9E-17 86.9 7.4 63 10-74 144-206 (211)
6 3q72_A GTP-binding protein RAD 99.4 2.7E-12 9.4E-17 80.0 8.0 62 9-72 104-165 (166)
7 2nzj_A GTP-binding protein REM 99.4 3E-12 1E-16 80.3 8.0 63 10-74 110-172 (175)
8 3q85_A GTP-binding protein REM 99.4 2.6E-12 9E-17 80.3 7.6 61 10-72 108-168 (169)
9 3cpj_B GTP-binding protein YPT 99.3 2.2E-12 7.6E-17 84.7 6.4 64 9-74 116-179 (223)
10 3cbq_A GTP-binding protein REM 99.3 5.8E-12 2E-16 81.4 8.0 63 10-74 129-191 (195)
11 3tkl_A RAS-related protein RAB 99.3 1.3E-11 4.4E-16 78.9 9.0 64 9-74 119-182 (196)
12 4dsu_A GTPase KRAS, isoform 2B 99.3 7.4E-12 2.5E-16 79.4 7.8 63 9-74 107-169 (189)
13 2cjw_A GTP-binding protein GEM 99.3 9.3E-12 3.2E-16 80.3 8.1 63 10-74 113-175 (192)
14 3kkq_A RAS-related protein M-R 99.3 1E-11 3.6E-16 78.6 8.2 61 9-71 121-182 (183)
15 2fu5_C RAS-related protein RAB 99.3 9.4E-12 3.2E-16 78.9 8.0 64 9-74 111-174 (183)
16 3dz8_A RAS-related protein RAB 99.3 8.6E-12 2.9E-16 79.9 7.6 64 9-74 126-189 (191)
17 3t5g_A GTP-binding protein RHE 99.3 5.2E-12 1.8E-16 79.9 6.3 64 9-74 109-172 (181)
18 2iwr_A Centaurin gamma 1; ANK 99.3 1.3E-11 4.3E-16 77.9 8.0 64 10-74 107-172 (178)
19 2a5j_A RAS-related protein RAB 99.3 1.4E-11 4.7E-16 78.9 8.2 64 9-74 124-187 (191)
20 2hup_A RAS-related protein RAB 99.3 1.4E-11 4.9E-16 79.7 8.1 64 9-74 132-196 (201)
21 2gf0_A GTP-binding protein DI- 99.3 3.3E-12 1.1E-16 81.8 5.0 61 10-73 113-173 (199)
22 2bme_A RAB4A, RAS-related prot 99.3 1.5E-11 5.2E-16 77.9 8.1 64 9-74 113-176 (186)
23 2o52_A RAS-related protein RAB 99.3 1.7E-11 5.7E-16 79.3 7.9 64 9-74 128-191 (200)
24 1z0f_A RAB14, member RAS oncog 99.3 1.3E-11 4.5E-16 77.5 7.2 61 9-71 118-178 (179)
25 3ihw_A Centg3; RAS, centaurin, 99.3 1.8E-11 6.3E-16 78.3 7.6 64 10-74 118-183 (184)
26 2fn4_A P23, RAS-related protei 99.3 2.2E-11 7.4E-16 76.6 7.9 64 9-74 112-175 (181)
27 1u8z_A RAS-related protein RAL 99.3 1.2E-11 4E-16 76.8 6.5 60 10-71 108-167 (168)
28 2gf9_A RAS-related protein RAB 99.3 2E-11 6.8E-16 78.0 7.7 63 10-74 126-188 (189)
29 2a9k_A RAS-related protein RAL 99.3 2.2E-11 7.4E-16 77.0 7.8 63 10-74 122-184 (187)
30 3tw8_B RAS-related protein RAB 99.3 1.9E-11 6.4E-16 76.9 7.3 63 10-74 112-174 (181)
31 2ew1_A RAS-related protein RAB 99.3 2.1E-11 7.2E-16 79.3 7.6 64 9-74 129-192 (201)
32 3t1o_A Gliding protein MGLA; G 99.3 3.1E-11 1.1E-15 76.9 8.2 61 10-74 134-195 (198)
33 1c1y_A RAS-related protein RAP 99.2 2E-11 7E-16 75.8 7.0 61 9-70 106-166 (167)
34 2g6b_A RAS-related protein RAB 99.2 3.4E-11 1.2E-15 75.9 8.0 62 10-73 115-176 (180)
35 1z08_A RAS-related protein RAB 99.2 1.3E-11 4.5E-16 77.0 5.9 60 10-71 110-169 (170)
36 2atv_A RERG, RAS-like estrogen 99.2 2.5E-11 8.4E-16 78.0 7.3 63 9-73 130-193 (196)
37 2il1_A RAB12; G-protein, GDP, 99.2 3E-11 1E-15 77.5 7.6 63 9-72 129-191 (192)
38 3c5c_A RAS-like protein 12; GD 99.2 9.8E-12 3.3E-16 79.6 5.2 60 10-71 126-186 (187)
39 2efe_B Small GTP-binding prote 99.2 2.2E-11 7.5E-16 76.8 6.7 63 9-73 115-177 (181)
40 2oil_A CATX-8, RAS-related pro 99.2 3.9E-11 1.3E-15 76.8 7.9 64 9-74 128-191 (193)
41 3reg_A RHO-like small GTPase; 99.2 2.9E-11 9.9E-16 77.5 7.1 63 10-74 126-191 (194)
42 1g16_A RAS-related protein SEC 99.2 5.7E-11 2E-15 74.0 8.2 63 9-74 106-168 (170)
43 1zbd_A Rabphilin-3A; G protein 99.2 4.1E-11 1.4E-15 77.2 7.7 63 10-74 112-174 (203)
44 1r2q_A RAS-related protein RAB 99.2 1.2E-11 3.9E-16 77.1 4.8 59 9-69 109-167 (170)
45 3oes_A GTPase rhebl1; small GT 99.2 1.2E-11 4.1E-16 79.9 5.0 64 9-74 127-190 (201)
46 3bc1_A RAS-related protein RAB 99.2 4.1E-11 1.4E-15 76.1 7.5 63 10-74 126-188 (195)
47 2f7s_A C25KG, RAS-related prot 99.2 5.1E-11 1.8E-15 77.5 7.9 63 10-74 140-202 (217)
48 1kao_A RAP2A; GTP-binding prot 99.2 1.7E-11 5.9E-16 76.0 5.0 61 9-71 106-166 (167)
49 1z2a_A RAS-related protein RAB 99.2 2.6E-11 8.8E-16 75.4 5.7 60 10-71 108-167 (168)
50 3cph_A RAS-related protein SEC 99.2 8.8E-11 3E-15 75.9 8.4 62 10-74 124-185 (213)
51 1z0j_A RAB-22, RAS-related pro 99.2 2.9E-11 1E-15 75.3 5.9 61 8-70 108-168 (170)
52 2hxs_A RAB-26, RAS-related pro 99.2 3.9E-11 1.3E-15 75.4 6.0 61 11-73 114-175 (178)
53 1wms_A RAB-9, RAB9, RAS-relate 99.2 1.5E-10 5.2E-15 72.6 8.3 61 10-72 115-175 (177)
54 2atx_A Small GTP binding prote 99.2 1.4E-10 4.6E-15 74.2 8.2 59 10-70 121-192 (194)
55 3q3j_B RHO-related GTP-binding 99.2 3.6E-11 1.2E-15 78.7 5.5 63 10-74 130-206 (214)
56 2fg5_A RAB-22B, RAS-related pr 99.2 3.4E-11 1.2E-15 77.2 5.3 61 10-72 127-187 (192)
57 1ky3_A GTP-binding protein YPT 99.2 1.5E-10 5.2E-15 72.8 8.2 64 10-74 117-181 (182)
58 4djt_A GTP-binding nuclear pro 99.2 5.3E-11 1.8E-15 77.5 6.2 63 10-74 116-178 (218)
59 2p5s_A RAS and EF-hand domain 99.2 5.4E-11 1.8E-15 76.7 6.0 60 10-71 132-197 (199)
60 1ek0_A Protein (GTP-binding pr 99.2 2.8E-11 9.5E-16 75.3 4.4 59 9-69 106-167 (170)
61 1z06_A RAS-related protein RAB 99.2 6.9E-11 2.4E-15 75.4 6.3 61 9-71 125-188 (189)
62 2q3h_A RAS homolog gene family 99.2 1.3E-10 4.3E-15 74.8 7.5 63 10-74 123-198 (201)
63 2y8e_A RAB-protein 6, GH09086P 99.2 3.4E-11 1.2E-15 75.6 4.6 60 10-71 118-177 (179)
64 2ce2_X GTPase HRAS; signaling 99.2 1.7E-10 5.7E-15 71.3 7.7 59 10-71 107-165 (166)
65 2yc2_C IFT27, small RAB-relate 99.1 8.9E-11 3E-15 75.5 6.6 63 10-74 131-195 (208)
66 2erx_A GTP-binding protein DI- 99.1 3E-11 1E-15 75.3 4.0 59 10-70 108-166 (172)
67 2gco_A H9, RHO-related GTP-bin 99.1 1.8E-10 6.1E-15 74.4 7.7 59 10-70 128-199 (201)
68 3con_A GTPase NRAS; structural 99.1 2.8E-10 9.6E-15 72.4 8.5 62 10-74 125-186 (190)
69 2j1l_A RHO-related GTP-binding 99.1 1.2E-10 4.3E-15 75.9 7.0 63 10-74 137-212 (214)
70 1x3s_A RAS-related protein RAB 99.1 2.9E-10 1E-14 72.3 8.5 62 10-74 120-181 (195)
71 2qu8_A Putative nucleolar GTP- 99.1 2.8E-10 9.5E-15 74.9 8.0 62 10-73 141-207 (228)
72 2fv8_A H6, RHO-related GTP-bin 99.1 2.2E-10 7.7E-15 74.2 7.1 62 10-73 128-202 (207)
73 3clv_A RAB5 protein, putative; 99.1 5.3E-10 1.8E-14 71.2 8.4 60 11-73 147-206 (208)
74 1m7b_A RND3/RHOE small GTP-bin 99.1 9.9E-11 3.4E-15 74.5 4.8 61 10-71 110-183 (184)
75 3bwd_D RAC-like GTP-binding pr 99.1 9.4E-11 3.2E-15 73.9 4.3 59 10-70 111-180 (182)
76 1mh1_A RAC1; GTP-binding, GTPa 99.1 2.5E-10 8.5E-15 72.1 6.2 61 10-72 108-181 (186)
77 4bas_A ADP-ribosylation factor 99.1 1.8E-10 6.3E-15 73.6 5.6 61 10-74 126-192 (199)
78 2j0v_A RAC-like GTP-binding pr 99.1 8.1E-11 2.8E-15 76.3 3.9 63 10-74 112-183 (212)
79 1gwn_A RHO-related GTP-binding 99.0 2.3E-10 7.8E-15 74.5 5.1 61 10-71 131-204 (205)
80 4gzl_A RAS-related C3 botulinu 99.0 1.6E-10 5.5E-15 74.9 4.3 59 10-69 133-203 (204)
81 2cxx_A Probable GTP-binding pr 99.0 5.9E-10 2E-14 70.7 6.8 60 10-74 121-187 (190)
82 1r8s_A ADP-ribosylation factor 99.0 7E-11 2.4E-15 73.4 2.2 59 10-72 100-163 (164)
83 1upt_A ARL1, ADP-ribosylation 99.0 1.7E-10 5.7E-15 72.0 3.7 59 10-72 107-170 (171)
84 3l0i_B RAS-related protein RAB 99.0 1.5E-11 5.3E-16 79.2 -1.1 62 9-72 136-197 (199)
85 2wji_A Ferrous iron transport 99.0 8.5E-11 2.9E-15 73.7 1.6 57 10-69 107-163 (165)
86 3c5h_A Glucocorticoid receptor 99.0 4.5E-10 1.5E-14 75.5 4.9 58 10-70 197-254 (255)
87 1f6b_A SAR1; gtpases, N-termin 99.0 8.2E-10 2.8E-14 71.3 5.8 56 10-68 125-196 (198)
88 3llu_A RAS-related GTP-binding 99.0 3.6E-10 1.2E-14 72.6 3.7 58 9-69 127-195 (196)
89 1m2o_B GTP-binding protein SAR 99.0 1E-09 3.5E-14 70.4 5.7 56 10-68 123-189 (190)
90 3pqc_A Probable GTP-binding pr 99.0 5.1E-10 1.7E-14 71.1 4.2 61 10-71 132-194 (195)
91 2x77_A ADP-ribosylation factor 99.0 3.6E-10 1.2E-14 72.0 3.4 60 10-73 122-186 (189)
92 2b6h_A ADP-ribosylation factor 98.9 2E-10 7E-15 73.8 1.8 57 10-70 129-190 (192)
93 1fzq_A ADP-ribosylation factor 98.9 2.2E-09 7.7E-14 68.2 6.5 59 10-72 116-179 (181)
94 1ksh_A ARF-like protein 2; sma 98.9 4.3E-09 1.5E-13 66.7 7.7 59 10-72 118-181 (186)
95 2wkq_A NPH1-1, RAS-related C3 98.9 1.6E-09 5.6E-14 74.2 5.9 60 10-71 258-330 (332)
96 3th5_A RAS-related C3 botulinu 98.5 1.2E-10 4E-15 75.3 0.0 57 11-69 134-203 (204)
97 3gj0_A GTP-binding nuclear pro 98.9 5.8E-10 2E-14 72.8 3.3 61 10-74 118-178 (221)
98 2zej_A Dardarin, leucine-rich 98.9 5.8E-10 2E-14 71.0 3.2 63 10-74 111-181 (184)
99 2h57_A ADP-ribosylation factor 98.9 3.8E-09 1.3E-13 67.3 7.0 58 10-71 125-187 (190)
100 1moz_A ARL1, ADP-ribosylation 98.9 6.4E-09 2.2E-13 65.5 7.8 62 9-73 117-182 (183)
101 1svi_A GTP-binding protein YSX 98.9 1.9E-09 6.5E-14 68.7 4.9 59 10-70 133-194 (195)
102 2f9l_A RAB11B, member RAS onco 98.9 1.9E-08 6.4E-13 64.7 8.8 64 9-74 108-171 (199)
103 1zj6_A ADP-ribosylation factor 98.8 1.1E-08 3.6E-13 65.0 7.4 59 10-72 116-179 (187)
104 2wjg_A FEOB, ferrous iron tran 98.8 6.3E-10 2.2E-14 70.6 1.5 62 9-73 110-171 (188)
105 1zd9_A ADP-ribosylation factor 98.8 6.2E-10 2.1E-14 71.0 1.2 58 10-71 123-185 (188)
106 2h17_A ADP-ribosylation factor 98.8 7.2E-09 2.4E-13 65.6 6.1 55 10-68 121-180 (181)
107 2dyk_A GTP-binding protein; GT 98.8 9.7E-10 3.3E-14 67.8 1.8 53 10-69 107-160 (161)
108 2lkc_A Translation initiation 98.8 1.6E-08 5.3E-13 63.4 7.4 61 10-74 106-174 (178)
109 3o47_A ADP-ribosylation factor 98.8 2E-09 6.9E-14 75.0 2.8 59 10-72 265-328 (329)
110 2fh5_B SR-beta, signal recogni 98.8 1.8E-09 6.2E-14 70.0 1.8 25 43-68 183-213 (214)
111 1u0l_A Probable GTPase ENGC; p 98.8 5.1E-09 1.8E-13 72.1 4.2 54 10-67 114-169 (301)
112 3r7w_B Gtpase2, GTP-binding pr 98.8 1.1E-09 3.7E-14 76.6 0.5 61 9-72 104-175 (331)
113 3dpu_A RAB family protein; roc 98.8 9.6E-09 3.3E-13 75.5 5.5 61 10-72 149-209 (535)
114 1oix_A RAS-related protein RAB 98.7 3.8E-08 1.3E-12 63.0 7.5 59 9-69 132-190 (191)
115 4dcu_A GTP-binding protein ENG 98.7 2.2E-08 7.4E-13 72.4 6.5 64 10-74 305-372 (456)
116 1cip_A Protein (guanine nucleo 98.7 4.5E-09 1.5E-13 74.1 2.5 62 10-73 259-346 (353)
117 2gj8_A MNME, tRNA modification 98.7 3.8E-09 1.3E-13 66.8 1.7 53 10-71 114-166 (172)
118 3a1s_A Iron(II) transport prot 98.7 8.4E-09 2.9E-13 69.6 2.8 59 9-70 108-166 (258)
119 3iev_A GTP-binding protein ERA 98.7 4.3E-08 1.5E-12 67.6 6.1 63 9-72 120-183 (308)
120 2yv5_A YJEQ protein; hydrolase 98.7 1.4E-08 4.8E-13 70.0 3.6 55 10-66 109-164 (302)
121 4dhe_A Probable GTP-binding pr 98.7 1.8E-08 6.1E-13 65.5 3.9 64 10-74 143-214 (223)
122 3b1v_A Ferrous iron uptake tra 98.6 7.8E-09 2.7E-13 70.4 2.1 57 10-69 106-162 (272)
123 2hf9_A Probable hydrogenase ni 98.6 4.2E-08 1.5E-12 64.0 5.1 57 14-71 167-224 (226)
124 3lvq_E ARF-GAP with SH3 domain 98.6 6.9E-09 2.4E-13 75.4 1.1 61 10-74 422-487 (497)
125 3ohm_A Guanine nucleotide-bind 98.6 1.3E-08 4.4E-13 71.1 2.3 62 10-73 233-320 (327)
126 2e87_A Hypothetical protein PH 98.6 5.9E-08 2E-12 68.1 5.4 58 11-72 280-337 (357)
127 3qq5_A Small GTP-binding prote 98.6 2.7E-08 9.3E-13 71.6 2.7 59 10-72 139-197 (423)
128 1zcb_A G alpha I/13; GTP-bindi 98.5 2.4E-08 8.1E-13 70.6 2.3 62 10-73 267-355 (362)
129 2hjg_A GTP-binding protein ENG 98.5 1.8E-07 6.3E-12 67.2 6.1 63 10-73 285-351 (436)
130 2xtz_A Guanine nucleotide-bind 98.5 4.5E-08 1.5E-12 69.0 2.5 63 10-73 249-347 (354)
131 3r7w_A Gtpase1, GTP-binding pr 98.4 1E-07 3.4E-12 65.7 3.3 57 10-69 114-179 (307)
132 2wsm_A Hydrogenase expression/ 98.4 1.1E-07 3.9E-12 61.8 3.3 62 11-73 154-216 (221)
133 1xzp_A Probable tRNA modificat 98.4 5.5E-07 1.9E-11 65.8 7.2 56 11-71 350-405 (482)
134 1mky_A Probable GTP-binding pr 98.4 6.8E-07 2.3E-11 64.3 7.2 62 10-72 291-356 (439)
135 3k53_A Ferrous iron transport 98.4 5E-08 1.7E-12 65.9 1.1 58 12-72 110-167 (271)
136 3iby_A Ferrous iron transport 98.4 4.1E-08 1.4E-12 66.2 0.7 59 7-68 106-164 (256)
137 1lnz_A SPO0B-associated GTP-bi 98.4 2.4E-07 8.1E-12 65.0 3.5 57 10-72 273-331 (342)
138 3gee_A MNME, tRNA modification 98.4 1E-06 3.6E-11 64.2 7.0 55 11-70 343-397 (476)
139 3h2y_A GTPase family protein; 98.3 1E-06 3.4E-11 62.3 6.5 57 10-69 95-158 (368)
140 3i8s_A Ferrous iron transport 98.3 3.2E-08 1.1E-12 67.2 -1.3 58 10-70 111-168 (274)
141 2qag_A Septin-2, protein NEDD5 98.3 1.7E-07 5.9E-12 66.0 1.8 62 10-74 173-236 (361)
142 1azs_C GS-alpha; complex (lyas 98.2 2.9E-07 1E-11 65.9 1.9 30 43-73 358-387 (402)
143 2qnr_A Septin-2, protein NEDD5 98.2 3.1E-07 1.1E-11 63.3 1.5 61 10-73 154-216 (301)
144 1s0u_A EIF-2-gamma, translatio 98.2 2.3E-06 7.7E-11 61.0 5.9 58 12-70 136-197 (408)
145 1ega_A Protein (GTP-binding pr 98.2 1.3E-06 4.5E-11 60.0 4.2 61 9-71 114-175 (301)
146 1wf3_A GTP-binding protein; GT 98.2 3.9E-07 1.3E-11 62.8 1.5 56 11-71 117-173 (301)
147 3cb4_D GTP-binding protein LEP 98.2 2.5E-06 8.6E-11 63.8 5.9 58 10-71 122-182 (599)
148 3ec1_A YQEH GTPase; atnos1, at 98.2 3.3E-06 1.1E-10 59.7 5.8 56 11-69 98-160 (369)
149 1mky_A Probable GTP-binding pr 98.2 2E-06 7E-11 61.8 4.8 57 10-72 109-167 (439)
150 2ywe_A GTP-binding protein LEP 98.1 3.2E-06 1.1E-10 63.3 5.8 58 10-71 124-184 (600)
151 3geh_A MNME, tRNA modification 98.1 3.1E-06 1.1E-10 61.5 5.0 56 11-72 330-385 (462)
152 4fid_A G protein alpha subunit 98.0 9.4E-07 3.2E-11 62.0 0.8 61 10-71 227-328 (340)
153 2hjg_A GTP-binding protein ENG 98.0 1.7E-06 5.9E-11 62.1 2.0 58 8-71 108-165 (436)
154 1kk1_A EIF2gamma; initiation o 98.0 3.9E-06 1.3E-10 59.8 3.6 58 12-70 138-199 (410)
155 2aka_B Dynamin-1; fusion prote 98.0 8.2E-07 2.8E-11 60.2 0.1 64 8-72 189-254 (299)
156 1puj_A YLQF, conserved hypothe 98.0 8.3E-06 2.8E-10 55.7 5.0 59 10-72 49-107 (282)
157 1udx_A The GTP-binding protein 98.0 1.1E-05 3.7E-10 58.0 5.7 60 11-74 269-328 (416)
158 3p32_A Probable GTPase RV1496/ 98.0 3.4E-06 1.2E-10 59.1 3.0 59 11-72 217-285 (355)
159 1wb1_A Translation elongation 97.9 6.8E-06 2.3E-10 59.9 4.0 60 10-70 124-188 (482)
160 1yrb_A ATP(GTP)binding protein 97.9 1.8E-05 6.1E-10 52.5 5.6 60 10-72 170-258 (262)
161 1nrj_B SR-beta, signal recogni 97.9 2.5E-06 8.6E-11 55.1 1.1 47 9-57 118-170 (218)
162 3sjy_A Translation initiation 97.9 8.2E-06 2.8E-10 58.1 3.7 59 12-71 130-192 (403)
163 2elf_A Protein translation elo 97.9 1.4E-05 4.9E-10 56.4 4.8 60 10-71 110-180 (370)
164 3izy_P Translation initiation 97.9 7.1E-06 2.4E-10 60.7 3.0 60 9-70 102-167 (537)
165 2qag_C Septin-7; cell cycle, c 97.8 2.7E-06 9.3E-11 61.2 -0.2 61 10-72 166-228 (418)
166 3t5d_A Septin-7; GTP-binding p 97.8 2.6E-06 8.8E-11 57.6 -0.7 60 11-72 144-205 (274)
167 3tr5_A RF-3, peptide chain rel 97.8 4.1E-05 1.4E-09 56.5 5.5 27 45-72 252-278 (528)
168 4dcu_A GTP-binding protein ENG 97.8 5.7E-06 1.9E-10 59.7 0.9 58 8-71 128-185 (456)
169 2qtf_A Protein HFLX, GTP-bindi 97.7 8E-05 2.7E-09 52.5 6.6 64 10-74 291-357 (364)
170 1g7s_A Translation initiation 97.7 0.00015 5.1E-09 54.3 8.3 29 44-73 192-220 (594)
171 1pui_A ENGB, probable GTP-bind 97.7 3.8E-05 1.3E-09 49.2 3.9 61 10-71 136-199 (210)
172 3l82_B F-box only protein 4; T 97.5 0.00012 4E-09 48.5 4.8 59 10-71 161-223 (227)
173 1d2e_A Elongation factor TU (E 97.5 2.6E-05 8.8E-10 55.4 1.3 60 10-70 117-194 (397)
174 1zo1_I IF2, translation initia 97.5 1.3E-05 4.4E-10 58.9 -0.2 57 10-67 102-163 (501)
175 2dy1_A Elongation factor G; tr 97.5 0.00011 3.6E-09 55.6 4.7 28 44-72 248-275 (665)
176 3j2k_7 ERF3, eukaryotic polype 97.5 8.2E-05 2.8E-09 53.6 3.6 53 10-63 153-217 (439)
177 2c78_A Elongation factor TU-A; 97.5 2.5E-05 8.4E-10 55.6 0.7 47 10-57 126-180 (405)
178 2p67_A LAO/AO transport system 97.4 0.00012 4E-09 51.1 3.9 59 11-70 194-260 (341)
179 1zun_B Sulfate adenylate trans 97.4 3.9E-05 1.3E-09 55.1 1.4 51 11-63 156-216 (434)
180 2rcn_A Probable GTPase ENGC; Y 97.4 0.00016 5.5E-09 51.0 4.0 54 10-65 159-213 (358)
181 3l2o_B F-box only protein 4; s 97.3 0.00047 1.6E-08 47.7 6.0 59 10-71 246-308 (312)
182 3t34_A Dynamin-related protein 97.3 5.5E-05 1.9E-09 52.9 1.5 61 8-70 200-260 (360)
183 3p26_A Elongation factor 1 alp 97.3 0.00012 4.2E-09 53.2 3.1 48 12-60 172-227 (483)
184 1jwy_B Dynamin A GTPase domain 97.3 0.0007 2.4E-08 46.0 6.1 62 8-71 195-262 (315)
185 3lxx_A GTPase IMAP family memb 97.3 0.00036 1.2E-08 45.8 4.5 59 12-72 146-215 (239)
186 2xtp_A GTPase IMAP family memb 97.2 8.1E-05 2.8E-09 49.5 1.1 60 11-73 138-210 (260)
187 3avx_A Elongation factor TS, e 97.2 0.00018 6.2E-09 57.7 3.3 60 10-70 410-485 (1289)
188 1t9h_A YLOQ, probable GTPase E 97.2 3.3E-05 1.1E-09 53.5 -0.8 53 9-63 115-169 (307)
189 2x2e_A Dynamin-1; nitration, h 97.2 1.4E-05 4.8E-10 55.9 -2.8 61 8-69 194-256 (353)
190 1jny_A EF-1-alpha, elongation 97.2 5.9E-05 2E-09 54.2 0.1 52 11-63 143-205 (435)
191 2www_A Methylmalonic aciduria 97.1 0.00053 1.8E-08 48.0 4.6 58 11-71 212-279 (349)
192 3cnl_A YLQF, putative uncharac 97.1 0.00038 1.3E-08 46.9 3.5 52 11-67 46-97 (262)
193 3mca_A HBS1, elongation factor 97.1 0.00016 5.6E-09 54.0 1.5 48 10-59 313-371 (592)
194 1f60_A Elongation factor EEF1A 97.0 0.0002 7E-09 51.8 1.3 51 10-61 143-202 (458)
195 1r5b_A Eukaryotic peptide chai 97.0 0.00015 5.2E-09 52.6 0.5 52 10-62 179-243 (467)
196 2j69_A Bacterial dynamin-like 96.9 0.001 3.6E-08 50.5 4.8 63 9-72 228-326 (695)
197 3izq_1 HBS1P, elongation facto 96.8 0.00032 1.1E-08 52.6 1.1 50 11-61 304-362 (611)
198 2qm8_A GTPase/ATPase; G protei 96.8 0.0022 7.4E-08 44.7 5.1 57 12-70 194-260 (337)
199 3lxw_A GTPase IMAP family memb 96.7 0.0012 4E-08 43.9 3.4 61 11-73 139-210 (247)
200 3zvr_A Dynamin-1; hydrolase, D 96.5 0.00028 9.6E-09 54.3 -1.0 61 7-68 213-275 (772)
201 1dar_A EF-G, elongation factor 96.1 0.009 3.1E-07 45.4 5.5 28 44-72 256-283 (691)
202 2h5e_A Peptide chain release f 95.7 0.024 8.1E-07 41.8 6.0 27 45-72 253-279 (529)
203 2rdo_7 EF-G, elongation factor 95.3 0.036 1.2E-06 42.2 5.9 28 44-72 262-289 (704)
204 3vqt_A RF-3, peptide chain rel 94.9 0.042 1.4E-06 40.7 5.2 27 44-71 269-295 (548)
205 2xex_A Elongation factor G; GT 94.8 0.053 1.8E-06 41.2 5.6 28 44-72 254-281 (693)
206 1wxq_A GTP-binding protein; st 94.5 0.0035 1.2E-07 44.7 -1.3 48 11-62 214-261 (397)
207 2ged_A SR-beta, signal recogni 94.3 0.035 1.2E-06 34.5 3.1 20 9-28 154-173 (193)
208 3j25_A Tetracycline resistance 93.7 0.05 1.7E-06 41.0 3.3 27 44-71 213-239 (638)
209 2dby_A GTP-binding protein; GD 92.9 0.025 8.4E-07 40.0 0.6 53 11-65 201-256 (368)
210 1jal_A YCHF protein; nucleotid 88.6 0.58 2E-05 33.0 4.3 43 10-54 198-240 (363)
211 4fn5_A EF-G 1, elongation fact 87.7 1.1 3.8E-05 34.1 5.6 27 44-71 265-291 (709)
212 1h65_A Chloroplast outer envel 87.2 0.45 1.5E-05 31.5 2.9 16 12-27 155-170 (270)
213 4a9a_A Ribosome-interacting GT 86.6 2.1 7.3E-05 30.2 6.2 51 10-69 248-298 (376)
214 3def_A T7I23.11 protein; chlor 85.6 0.87 3E-05 30.0 3.6 18 12-29 152-169 (262)
215 1tq4_A IIGP1, interferon-induc 76.7 4.1 0.00014 29.1 4.7 63 10-73 174-255 (413)
216 2qpt_A EH domain-containing pr 67.9 1.1 3.9E-05 33.1 0.1 19 8-26 215-233 (550)
217 3h2y_A GTPase family protein; 66.4 0.33 1.1E-05 34.0 -2.9 45 4-52 266-311 (368)
218 1ni3_A YCHF GTPase, YCHF GTP-b 65.1 12 0.00041 26.5 5.0 43 11-54 224-269 (392)
219 3ec1_A YQEH GTPase; atnos1, at 61.3 2.8 9.5E-05 29.3 1.1 51 4-57 267-317 (369)
220 1n0u_A EF-2, elongation factor 52.2 4 0.00014 31.8 0.7 15 10-24 149-163 (842)
221 2j37_W Signal recognition part 43.9 3 0.0001 30.7 -1.1 21 48-68 289-310 (504)
222 1ko7_A HPR kinase/phosphatase; 31.3 32 0.0011 23.6 2.5 50 10-68 79-128 (314)
223 2qag_B Septin-6, protein NEDD5 27.2 56 0.0019 23.5 3.2 16 10-25 175-190 (427)
224 3dm5_A SRP54, signal recogniti 23.4 61 0.0021 23.4 2.9 39 13-59 241-279 (443)
225 1np6_A Molybdopterin-guanine d 21.5 74 0.0025 19.5 2.7 20 3-22 105-124 (174)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.78 E-value=1.9e-19 Score=119.37 Aligned_cols=64 Identities=31% Similarity=0.382 Sum_probs=55.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+++|++|||||+||.+.+.++.+++..+++.+ ++.| +++||++|.||+++|..|++.+.....
T Consensus 116 ~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~-~~~~-~e~SAktg~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 116 GSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-NVMF-IETSAKAGYNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEE-EEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred CCCCeEEEEeeccchHhcCcccHHHHhhHHHHh-CCee-EEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence 478999999999999988889999999999999 8999 999999999999999999999887655
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.60 E-value=3.4e-15 Score=96.84 Aligned_cols=64 Identities=39% Similarity=0.585 Sum_probs=56.8
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+..+.+..++..+ ++++ +++||++|.||+++|.+|.+.+.+...
T Consensus 111 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 111 TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN-KMPF-LETSALDSTNVEDAFLTMARQIKESMS 174 (206)
T ss_dssp CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCCE-EECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 467999999999999877777888888888888 8899 999999999999999999999987754
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.47 E-value=2.7e-14 Score=92.30 Aligned_cols=62 Identities=35% Similarity=0.419 Sum_probs=52.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-YVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+. .+.+..+.+..+.. .. +..+ +++||++|.|++++|.+|++.+.+...
T Consensus 116 ~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKN-NIPY-FETSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp GGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTT-SCCE-EECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCc-ccccCHHHHHHHHHhcC-CceE-EEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 578999999999997 34566677777777 45 7899 999999999999999999999887654
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=88.36 Aligned_cols=63 Identities=35% Similarity=0.512 Sum_probs=55.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+.+..+++..++..+ +..+ +++||++|.||+++|.+|++.+.++..
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-NVNY-VETSAKTRANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEE-EEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeccCccccccccHHHHHHHHHHh-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence 58999999999999876677888888888888 8899 999999999999999999999887643
No 5
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=8.6e-13 Score=86.92 Aligned_cols=63 Identities=27% Similarity=0.323 Sum_probs=54.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+||||||+||.+.+.+..+++..++..+ ++.+ +++||++|.||+++|..+++.+.....
T Consensus 144 ~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~-~~~~-~e~SAk~g~~v~elf~~l~~~i~~~~~ 206 (211)
T 2g3y_A 144 EDIPIILVGNKSDLVRCREVSVSEGRACAVVF-DCKF-IETSAAVQHNVKELFEGIVRQVRLRRD 206 (211)
T ss_dssp TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEE-EECBTTTTBSHHHHHHHHHHHHHHHCC
T ss_pred CCCcEEEEEEChHHhcCceEeHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 57999999999999866677777777888888 7899 999999999999999999998865543
No 6
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.37 E-value=2.7e-12 Score=79.98 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=54.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+++|+++|+||+|+.+.+.+..+.+..++..+ +.++ +++||++|.|++++|.++.+.+.++
T Consensus 104 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 104 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVF-DCKF-IETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp --CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT-TCEE-EECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeccccccccccCHHHHHHHHHHh-CCcE-EEeccCCCCCHHHHHHHHHHHHHhc
Confidence 368999999999999877788888888888888 8899 9999999999999999999988764
No 7
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.36 E-value=3e-12 Score=80.34 Aligned_cols=63 Identities=29% Similarity=0.328 Sum_probs=54.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+.+..+++..++..+ +.++ +++||++|.||+++|.+|++.+..+..
T Consensus 110 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 110 DHVPIILVGNKADLARCREVSVEEGRACAVVF-DCKF-IETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp --CCEEEEEECTTCTTTCCSCHHHHHHHHHHH-TSEE-EECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEChhhccccccCHHHHHHHHHHc-CCeE-EEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 57999999999999877777878888888888 8899 999999999999999999999877654
No 8
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.36 E-value=2.6e-12 Score=80.28 Aligned_cols=61 Identities=26% Similarity=0.297 Sum_probs=55.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+.+.+.+..+.+..+++.+ +.++ +++||+++.|++++|..+++.+..+
T Consensus 108 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 108 HDLPVILVGNKSDLARSREVSLEEGRHLAGTL-SCKH-IETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEE-EECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeeCcchhhcccCCHHHHHHHHHHc-CCcE-EEecCccCCCHHHHHHHHHHHHHhc
Confidence 48999999999999877778888889999999 8899 9999999999999999999988654
No 9
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.2e-12 Score=84.70 Aligned_cols=64 Identities=31% Similarity=0.372 Sum_probs=53.4
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|++||+||+|+.+.+.+..+.+..++..+ ++.+ +++||+++.||+++|.+|++.+.++..
T Consensus 116 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 116 DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN-QLLF-TETSALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT-TCEE-EECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred CCCCeEEEEEECcccccccccCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 357999999999999876677778888888888 8899 999999999999999999999887654
No 10
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.33 E-value=5.8e-12 Score=81.41 Aligned_cols=63 Identities=25% Similarity=0.298 Sum_probs=55.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+.+..+++..++..+ +..+ +++||+++.||+++|..+++.+.+...
T Consensus 129 ~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~-~~~~-~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 129 HDLPVILVGNKSDLARSREVSLEEGRHLAGTL-SCKH-IETSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCEE-EEEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred CCCCEEEEeechhccccCCcCHHHHHHHHHHh-CCEE-EEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 57999999999999877778888888898888 7899 999999999999999999998876543
No 11
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.31 E-value=1.3e-11 Score=78.89 Aligned_cols=64 Identities=38% Similarity=0.642 Sum_probs=57.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+....+..++..+ +.++ +++||+++.||+++|.+|++.+.++..
T Consensus 119 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 119 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPF-LETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCCE-EEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEECcccccccccCHHHHHHHHHHc-CCcE-EEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 458999999999999887778888888899998 8999 999999999999999999999988765
No 12
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.31 E-value=7.4e-12 Score=79.40 Aligned_cols=63 Identities=35% Similarity=0.578 Sum_probs=55.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+ +.+..+.+..++..+ +.++ +++||++|.|++++|.+|.+.+.+...
T Consensus 107 ~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 107 SEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSY-GIPF-IETSAKTRQGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp CSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHH-TCCE-EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECccCcc-cccCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHhhh
Confidence 46899999999999974 456777888888888 8899 999999999999999999999987755
No 13
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.31 E-value=9.3e-12 Score=80.25 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=54.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+...+.+..+.+..++..+ +..+ +++||++|.||+++|..+++.+.....
T Consensus 113 ~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~-~~~~-~e~SA~~g~~v~~lf~~l~~~~~~~~~ 175 (192)
T 2cjw_A 113 EDIPIILVGNKSDLVRXREVSVSEGRAXAVVF-DXKF-IETSAAVQHNVKELFEGIVRQVRLRRD 175 (192)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEE-EECBTTTTBSHHHHHHHHHHHHHHHHS
T ss_pred CCCeEEEEEechhhhccccccHHHHHHHHHHh-CCce-EEeccccCCCHHHHHHHHHHHHHhhcc
Confidence 57999999999999766667777777777778 7899 999999999999999999998865543
No 14
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.31 E-value=1e-11 Score=78.63 Aligned_cols=61 Identities=31% Similarity=0.398 Sum_probs=55.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccC-CCCCHHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAK-DSTNVEEAFYCLANELKN 71 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~lf~~l~~~i~~ 71 (106)
..++|+++|+||+|+.+.+.+..+++..++..+ +.++ +++||+ ++.||+++|..|++.+.+
T Consensus 121 ~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKY-NIPY-IETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-TCCE-EEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-CCeE-EEeccCCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999887788888899999999 8999 999999 999999999999988765
No 15
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.31 E-value=9.4e-12 Score=78.85 Aligned_cols=64 Identities=34% Similarity=0.579 Sum_probs=52.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+++|+++|+||+|+.+.+.+..+.+..+++.+ ++.+ +++||+++.||+++|..|++.+.++..
T Consensus 111 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 111 SADVEKMILGNKCDVNDKRQVSKERGEKLALDY-GIKF-METSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-TCEE-EECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECccCCccCcCCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 357999999999999876777888888898888 8899 999999999999999999999887655
No 16
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=8.6e-12 Score=79.88 Aligned_cols=64 Identities=28% Similarity=0.429 Sum_probs=56.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+..+.+..++..+ ++.+ +++||+++.||+++|..|++.+.++..
T Consensus 126 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 126 WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL-GFDF-FEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEE-EECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCeE-EEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 368999999999999877778888888899888 8899 999999999999999999999987754
No 17
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.30 E-value=5.2e-12 Score=79.93 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=55.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+..+.+..+++.+ +..+ +++||+++.|++++|..+++.+.+...
T Consensus 109 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESW-NAAF-LESSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp ---CCEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCEE-EECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCEEEEEECccchhcceecHHHHHHHHHHh-CCcE-EEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 458999999999999877888888999999999 8899 999999999999999999999887655
No 18
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.29 E-value=1.3e-11 Score=77.93 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=54.1
Q ss_pred CCCeEEEEEecCCCC--CCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLE--SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++|+||+|+. ..+.+..+++..++..+++..+ +++||++|.||+++|..+++.+.+...
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~-~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 107 GGLALALVGTQDRISASSPRVVGDARARALXADMKRCSY-YETXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp CCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEE-EEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeE-EEEeccccCCHHHHHHHHHHHHHHHHh
Confidence 689999999999994 4456777888888776536889 999999999999999999998877654
No 19
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.29 E-value=1.4e-11 Score=78.91 Aligned_cols=64 Identities=39% Similarity=0.439 Sum_probs=57.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+..+++..++..+ ++.+ +++||+++.||+++|.+|++.+.++..
T Consensus 124 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 124 SSNMVIMLIGNKSDLESRRDVKREEGEAFAREH-GLIF-METSAKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEE-EEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECcccCCccccCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 368999999999999876677788888888888 8899 999999999999999999999988765
No 20
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.29 E-value=1.4e-11 Score=79.74 Aligned_cols=64 Identities=45% Similarity=0.511 Sum_probs=56.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|++||+||+|+.+.+.+..+++..++... ++ .+ +++||+++.||+++|.+|++.+.++..
T Consensus 132 ~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~-~~~SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 132 GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHY-DILCA-IETSAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCSEE-EECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCccccccccCHHHHHHHHHHc-CCCEE-EEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 367999999999999876677888888888888 77 89 999999999999999999999987654
No 21
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=3.3e-12 Score=81.82 Aligned_cols=61 Identities=36% Similarity=0.385 Sum_probs=51.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
+++|+++|+||+|+.+ +.+..+.+..++..+ ++.+ +++||+++.||+++|.+|.+.+.++.
T Consensus 113 ~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQ-REVDTREAQAVAQEW-KCAF-METSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp GGSCEEEEEECTTCSS-CSSCHHHHHHHHHHH-TCEE-EECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred CCCCEEEEEECccCCc-cccCHHHHHHHHHHh-CCeE-EEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 4789999999999975 456677778888888 8899 99999999999999999988775543
No 22
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.28 E-value=1.5e-11 Score=77.94 Aligned_cols=64 Identities=36% Similarity=0.433 Sum_probs=57.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+...++..++... ++.+ +++||+++.|++++|.++++.+.++..
T Consensus 113 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 113 SQNIVIILCGNKKDLDADREVTFLEASRFAQEN-ELMF-LETSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEE-EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECcccccccccCHHHHHHHHHHc-CCEE-EEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 468999999999999766677778888888888 8899 999999999999999999999988766
No 23
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.27 E-value=1.7e-11 Score=79.27 Aligned_cols=64 Identities=38% Similarity=0.438 Sum_probs=56.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+...++..++... ++.+ +++||+++.||+++|.+|++.+.++..
T Consensus 128 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 128 SPNIVVILCGNKKDLDPEREVTFLEASRFAQEN-ELMF-LETSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEE-EEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCcccccccCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 468999999999999766677777888888888 8899 999999999999999999999988766
No 24
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.27 E-value=1.3e-11 Score=77.50 Aligned_cols=61 Identities=33% Similarity=0.488 Sum_probs=53.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
..++|+++|+||+|+.+.+.+..+++..++..+ ++.+ +++||+++.|++++|.++++.+.+
T Consensus 118 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 118 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN-GLLF-LEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEE-EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCCcEEEEEECcccccccccCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999776677778888888888 8899 999999999999999999987753
No 25
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.26 E-value=1.8e-11 Score=78.30 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=54.6
Q ss_pred CCCeEEEEEecCCCC--CCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLE--SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+. ..+.+..+++..++..++...+ +++||+++.||+++|.++++.+.++..
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~-~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTY-YETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEE-EEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeE-EEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 578999999999994 4566788888889988833899 999999999999999999998887643
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.26 E-value=2.2e-11 Score=76.63 Aligned_cols=64 Identities=36% Similarity=0.438 Sum_probs=56.7
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+..+.+..++... +..+ +++||+++.|++++|.+|.+.+.+...
T Consensus 112 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 112 RDDFPVVLVGNKADLESQRQVPRSEASAFGASH-HVAY-FEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEE-EECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECcccccccccCHHHHHHHHHHc-CCeE-EEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 468999999999999876677788888888888 8899 999999999999999999999987655
No 27
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.26 E-value=1.2e-11 Score=76.78 Aligned_cols=60 Identities=33% Similarity=0.506 Sum_probs=53.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+.+.+..+++..++..+ +.++ +++||+++.|++++|.++++.+.+
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW-NVNY-VETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEE-EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEECccccccCccCHHHHHHHHHHc-CCeE-EEeCCCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999876677788888888888 8899 999999999999999999988754
No 28
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.26 E-value=2e-11 Score=77.96 Aligned_cols=63 Identities=27% Similarity=0.461 Sum_probs=55.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+.+..+.+..+++.+ ++.+ +++||+++.|++++|.+|++.+.++..
T Consensus 126 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 188 (189)
T 2gf9_A 126 DNAQVILVGNKCDLEDERVVPAEDGRRLADDL-GFEF-FEASAKENINVKQVFERLVDVICEKMN 188 (189)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEE-EECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECcccccccCCCHHHHHHHHHHc-CCeE-EEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 58999999999999876677777888888888 8899 999999999999999999999887643
No 29
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.26 E-value=2.2e-11 Score=77.00 Aligned_cols=63 Identities=35% Similarity=0.512 Sum_probs=56.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+.+..+++..+++.+ ++++ +++||+++.||+++|.+|.+.+.++..
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-NVNY-VETSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEE-EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHc-CCeE-EEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 48999999999999876667788888888888 8899 999999999999999999999887654
No 30
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=76.94 Aligned_cols=63 Identities=27% Similarity=0.346 Sum_probs=56.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++|+||+|+.+.+.+..+.+..++..+ +.++ +++||+++.|++++|.++.+.+.+...
T Consensus 112 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 112 DDVCRILVGNKNDDPERKVVETEDAYKFAGQM-GIQL-FETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCCE-EECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchhcccCHHHHHHHHHHc-CCeE-EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 57999999999999877777878888888888 8899 999999999999999999999887765
No 31
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=2.1e-11 Score=79.28 Aligned_cols=64 Identities=39% Similarity=0.452 Sum_probs=56.4
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+..+.+..++... ++.+ +++||+++.||+++|.++++.+.++..
T Consensus 129 ~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ-DMYY-LETSAKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCCE-EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 467999999999999876677788888888888 8899 999999999999999999999887654
No 32
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.25 E-value=3.1e-11 Score=76.87 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=54.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+ .+..+++..+++.+ +. .+ +++||+++.||+++|.+|++.+.++..
T Consensus 134 ~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~-~~~~~-~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPD--ALPVEMVRAVVDPE-GKFPV-LEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp TSSCEEEEEECTTSTT--CCCHHHHHHHHCTT-CCSCE-EECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEchhccc--ccCHHHHHHHHHhc-CCceE-EEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 6899999999999975 36778888898888 77 99 999999999999999999999988765
No 33
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.25 E-value=2e-11 Score=75.83 Aligned_cols=61 Identities=31% Similarity=0.465 Sum_probs=52.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
..++|+++|+||+|+.+.+.+..+.+..+++.+++..+ +++||++|.|++++|.+|.+.+.
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 106 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAF-LESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEE-EECBTTTTBSHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcE-EEecCCCCCCHHHHHHHHHHHHh
Confidence 36899999999999987667777888888877646789 99999999999999999988763
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=3.4e-11 Score=75.87 Aligned_cols=62 Identities=35% Similarity=0.439 Sum_probs=54.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++|+++|+||+|+.+.+.+..+.+..+++.+ ++.+ +++||+++.|++++|.++.+.+.++.
T Consensus 115 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 115 HDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPF-METSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-TCCE-EECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred CCCcEEEEEECcccCcccccCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 68999999999999877777888888888888 8899 99999999999999999998886543
No 35
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.24 E-value=1.3e-11 Score=77.03 Aligned_cols=60 Identities=35% Similarity=0.388 Sum_probs=53.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+.+.+..+++..+++.. +..+ +++||+++.|++++|.+|++.+.+
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESV-GAKH-YHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEE-EEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECcccccccccCHHHHHHHHHHc-CCeE-EEecCCCCCCHHHHHHHHHHHHhh
Confidence 57899999999999876677888888888888 8899 999999999999999999988764
No 36
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=2.5e-11 Score=78.02 Aligned_cols=63 Identities=29% Similarity=0.426 Sum_probs=55.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCC-CHHHHHHHHHHHHHHhh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDST-NVEEAFYCLANELKNRQ 73 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~lf~~l~~~i~~~~ 73 (106)
..++|+++|+||+|+.+.+.+..+++..++..+ ++.+ +++||+++. ||+++|.+|++.+.++.
T Consensus 130 ~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 130 PKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-ACAF-YECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSEE-EECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECcccccccccCHHHHHHHHHHh-CCeE-EEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 368999999999999876677888888888888 8899 999999999 99999999999987764
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.24 E-value=3e-11 Score=77.54 Aligned_cols=63 Identities=27% Similarity=0.463 Sum_probs=54.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
..++|+++|+||+|+.+.+.+..+++..+++...+..+ +++||+++.||+++|.+|.+.+.++
T Consensus 129 ~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~-~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 129 SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRF-CEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEE-EECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeE-EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 45899999999999987667777778888877437889 9999999999999999999988754
No 38
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.24 E-value=9.8e-12 Score=79.63 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEccc-CCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSA-KDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+.+.+..+++..++..+ ++.+ +++|| +++.||+++|..+++.+.+
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-GCLF-FEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEE-EECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHHHc-CCcE-EEEeecCccccHHHHHHHHHHHHhh
Confidence 58999999999999876778888888999988 8899 99999 8999999999999988754
No 39
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.23 E-value=2.2e-11 Score=76.81 Aligned_cols=63 Identities=35% Similarity=0.435 Sum_probs=53.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.+++|+++|+||+|+.+.+.+..+++..++..+ ++.+ +++||+++.|++++|.+|++.+.+..
T Consensus 115 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 115 NPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN-GLFF-METSAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCEE-EECCSSSCTTHHHHHHHHHHTCC---
T ss_pred CCCCcEEEEEECCcccccccCCHHHHHHHHHHc-CCEE-EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 368999999999999877777888888888888 8899 99999999999999999988776543
No 40
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.23 E-value=3.9e-11 Score=76.75 Aligned_cols=64 Identities=38% Similarity=0.399 Sum_probs=56.2
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+..+.+..++... ++.+ +++||+++.||+++|.+|.+.+.++..
T Consensus 128 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENN-GLLF-LETSALDSTNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEE-EEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEECCCcccccccCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 368999999999999876667778888888888 8899 999999999999999999999887654
No 41
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.23 E-value=2.9e-11 Score=77.47 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=54.2
Q ss_pred CCCeEEEEEecCCCCCC--CCCCHHHHHHHhhhcCCcc-eEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESE--REVDFNEAEEMGEYVPEIH-YVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++|+||+|+.+. +.+..+.+..+++.+ +.. + +++||+++.||+++|..+++.+.++..
T Consensus 126 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 126 DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL-GCVAY-IEASSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH-TCSCE-EECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc-CCCEE-EEeecCCCCCHHHHHHHHHHHHHhcCC
Confidence 57999999999999753 567788888899888 766 9 999999999999999999998876543
No 42
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.22 E-value=5.7e-11 Score=73.97 Aligned_cols=63 Identities=29% Similarity=0.479 Sum_probs=53.7
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.+++|+++|+||+|+. .+.+..+.+..+++.+ ++++ +++||+++.|++++|..+.+.+.++..
T Consensus 106 ~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 168 (170)
T 1g16_A 106 NDEAQLLLVGNKSDME-TRVVTADQGEALAKEL-GIPF-IESSAKNDDNVNEIFFTLAKLIQEKID 168 (170)
T ss_dssp CTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHH-TCCE-EECBTTTTBSHHHHHHHHHHHHHHTC-
T ss_pred CCCCcEEEEEECccCC-cCccCHHHHHHHHHHc-CCeE-EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 3589999999999994 4456777788888888 8899 999999999999999999999877643
No 43
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.22 E-value=4.1e-11 Score=77.20 Aligned_cols=63 Identities=29% Similarity=0.478 Sum_probs=56.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+.+..+.+..++..+ ++.+ +++||+++.||+++|.+|.+.+.++..
T Consensus 112 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 112 DNAQVLLVGNKCDMEDERVVSSERGRQLADHL-GFEF-FEASAKDNINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp SSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH-TCEE-EECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHHHC-CCeE-EEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999877777888888888888 8899 999999999999999999999887754
No 44
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.22 E-value=1.2e-11 Score=77.08 Aligned_cols=59 Identities=39% Similarity=0.521 Sum_probs=51.8
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.+++|+++|+||+|+.+.+.+..+++..++... ++.+ +++||+++.|++++|.+|++.+
T Consensus 109 ~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 109 SPNIVIALSGNKADLANKRAVDFQEAQSYADDN-SLLF-METSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEE-EECCTTTCTTHHHHHHHHHHTS
T ss_pred CCCCcEEEEEECccCccccccCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHH
Confidence 468999999999999766667777888888888 8899 9999999999999999998765
No 45
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=79.87 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=55.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..++|+++|+||+|+.+.+.+....+..++..+ +..+ +++||+++.||+++|..|++.+.+...
T Consensus 127 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 127 KTRVPVVLVGNKADLSPEREVQAVEGKKLAESW-GATF-MESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp --CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEE-EECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCEEEEEECccCccccccCHHHHHHHHHHh-CCeE-EEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 357899999999999877778888888899988 8899 999999999999999999999887755
No 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.22 E-value=4.1e-11 Score=76.06 Aligned_cols=63 Identities=37% Similarity=0.447 Sum_probs=56.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+.+..+.+..++..+ ++.+ +++||+++.|++++|..|.+.+.++..
T Consensus 126 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKY-GIPY-FETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp SSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCCE-EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHc-CCCE-EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 68999999999999876677778888888888 8899 999999999999999999999887755
No 47
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.21 E-value=5.1e-11 Score=77.53 Aligned_cols=63 Identities=35% Similarity=0.430 Sum_probs=56.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+.+..+.+..++..+ ++.+ +++||+++.||+++|.+|.+.+.++..
T Consensus 140 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 140 ENPDIVLIGNKADLPDQREVNERQARELADKY-GIPY-FETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCCE-EEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccccccCHHHHHHHHHHC-CCcE-EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 68999999999999876677788888888888 8899 999999999999999999999887654
No 48
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.20 E-value=1.7e-11 Score=75.96 Aligned_cols=61 Identities=36% Similarity=0.387 Sum_probs=53.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
..++|+++|+||+|+.+.+.+..+.+..++..+ +.++ +++||+++.|++++|.++.+.+.+
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 106 YEKVPVILVGNKVDLESEREVSSSEGRALAEEW-GCPF-METSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSCE-EEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCcccccccCCHHHHHHHHHHh-CCCE-EEecCCCCcCHHHHHHHHHHHHhh
Confidence 358999999999999776677778888888888 8899 999999999999999999987753
No 49
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.20 E-value=2.6e-11 Score=75.44 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=53.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+.+.+..+.+..+++.+ ++.+ +++||+++.|++++|.+|.+.+.+
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 108 GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL-KLRF-YRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEE-EECBTTTTBSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHHHc-CCeE-EEEecCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999876667778888888888 8899 999999999999999999988764
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.20 E-value=8.8e-11 Score=75.93 Aligned_cols=62 Identities=29% Similarity=0.475 Sum_probs=54.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+. .+.+..+.+..++..+ ++++ +++||+++.||+++|.+|.+.+.++..
T Consensus 124 ~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 124 DEAQLLLVGNKSDME-TRVVTADQGEALAKEL-GIPF-IESSAKNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp TCSEEEEEEECTTCS-SCCSCHHHHHHHHHHH-TCCE-EECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCc-ccccCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 479999999999994 4556777788888888 8899 999999999999999999999988755
No 51
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.20 E-value=2.9e-11 Score=75.31 Aligned_cols=61 Identities=28% Similarity=0.424 Sum_probs=53.2
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
..+++|+++|+||+|+.+.+.+..+....++..+ +..+ +++||+++.|++++|..|.+.+.
T Consensus 108 ~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 108 GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI-HAIF-VETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEE-EECBTTTTBSHHHHHHHHHHHCC
T ss_pred CCCCCcEEEEEECCccccccccCHHHHHHHHHHc-CCEE-EEEeCCCCcCHHHHHHHHHHHHh
Confidence 3578999999999999876677788888888888 8899 99999999999999999987653
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.18 E-value=3.9e-11 Score=75.43 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=52.6
Q ss_pred CCe-EEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 11 AHD-SRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 11 ~ip-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
+.| +++|+||+|+.+.+.+..+.+..+++.+ ++++ +++||+++.||+++|.+|++.+.+..
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN-GFSS-HFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEE-EEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHHHc-CCcE-EEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 455 7999999999876677778888888888 8899 99999999999999999999886553
No 53
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.17 E-value=1.5e-10 Score=72.65 Aligned_cols=61 Identities=33% Similarity=0.359 Sum_probs=51.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+. .+.+..+.+..++....+..+ +++||+++.|++++|.++++.+.++
T Consensus 115 ~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 115 ESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPY-FETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp TTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCE-EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceE-EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 678999999999997 455677778888773327899 9999999999999999999988654
No 54
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=1.4e-10 Score=74.23 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=50.9
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++|+++|+||+|+.+. +.+..+++..++..+ +. .+ +++||+++.||+++|.+|++.+.
T Consensus 121 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 121 PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI-GACCY-VECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH-TCSCE-EECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc-CCcEE-EEeeCCCCCCHHHHHHHHHHHHh
Confidence 48999999999999753 356778888888888 65 89 99999999999999999998775
No 55
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.17 E-value=3.6e-11 Score=78.66 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=53.7
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCc-ceEEEcccCCCCC-HHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEI-HYVMETSAKDSTN-VEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~-v~~lf~~l~~~i~~~~~ 74 (106)
+++|++||+||+|+.+. +.+..+++..++..+ ++ .+ +++||+++.| |+++|..+++.+.....
T Consensus 130 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 130 PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL-GAEIY-LEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TCSEE-EECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc-CCCEE-EEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 58999999999999753 567888899999998 77 89 9999999998 99999999998876654
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=3.4e-11 Score=77.20 Aligned_cols=61 Identities=33% Similarity=0.445 Sum_probs=52.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+.+.+.+..+++..+++.+ ++.+ +++||+++.|++++|..|.+.+.+.
T Consensus 127 ~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 127 ENIVMAIAGNKCDLSDIREVPLKDAKEYAESI-GAIV-VETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT-TCEE-EECBTTTTBSHHHHHHHHHHTCC--
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHc-CCEE-EEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 58999999999999766677788888898888 8899 9999999999999999998876543
No 57
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.17 E-value=1.5e-10 Score=72.76 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=52.6
Q ss_pred CCCeEEEEEecCCCCC-CCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLES-EREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+ .+.+..+.+..++....+..+ +++||+++.|++++|.+|.+.+.++..
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL-FLTSAKNAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE-EEEBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE-EEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 6899999999999953 344667777788774337889 999999999999999999998877643
No 58
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.17 E-value=5.3e-11 Score=77.51 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=53.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+.+..+.+..++... +..+ +++||++|.||+++|.+|++.+.+...
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 116 NEAPIVVCANKIDIKNRQKISKKLVMEVLKGK-NYEY-FEISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp SSSCEEEEEECTTCC----CCHHHHHHHTTTC-CCEE-EEEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCcE-EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 46899999999999877677888888888888 8899 999999999999999999999987755
No 59
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.16 E-value=5.4e-11 Score=76.65 Aligned_cols=60 Identities=30% Similarity=0.318 Sum_probs=50.8
Q ss_pred CCCeEEEEEecCCCC------CCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLE------SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+. ..+.+..+.+..++..+ ++.+ +++||+++.||+++|.+|++.+.+
T Consensus 132 ~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 132 ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY-GALF-CETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp --CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH-TCEE-EECCTTTCTTHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECcccccccccccccccCHHHHHHHHHHc-CCeE-EEeeCCCCCCHHHHHHHHHHHHHh
Confidence 579999999999996 34567777888888888 8899 999999999999999999988753
No 60
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.16 E-value=2.8e-11 Score=75.32 Aligned_cols=59 Identities=29% Similarity=0.374 Sum_probs=50.9
Q ss_pred CCCCeEEEEEecCCCCCC---CCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESE---REVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
..++|+++|+||+|+.+. +.+..+....++..+ ++.+ +++||+++.|++++|.+|.+.+
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 106 SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK-GLLF-FETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-TCEE-EECCTTTCTTHHHHHHHHHTTS
T ss_pred CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHH
Confidence 468999999999999754 567777788888888 8899 9999999999999999998755
No 61
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.16 E-value=6.9e-11 Score=75.42 Aligned_cols=61 Identities=33% Similarity=0.438 Sum_probs=50.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCC---CCHHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDS---TNVEEAFYCLANELKN 71 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~~lf~~l~~~i~~ 71 (106)
..++|+++|+||+|+.+.+.+..+.+..++..+ ++.+ +++||+++ .||+++|.+|++.+.+
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH-SMPL-FETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCCE-EECCSSSGGGGSCHHHHHHHHC-----
T ss_pred CCCCCEEEEEECccccccceeCHHHHHHHHHHc-CCEE-EEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 468999999999999876677888888888888 8899 99999999 9999999999887753
No 62
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.15 E-value=1.3e-10 Score=74.77 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=53.7
Q ss_pred CCCeEEEEEecCCCCC------------CCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLES------------EREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++|+||+|+.+ .+.+..+.+..++..+ +. .+ +++||+++.||+++|.++++.+.+...
T Consensus 123 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 123 PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI-KAASY-IECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEE-EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc-CCcEE-EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 4899999999999975 2456777788888887 65 89 999999999999999999999887654
No 63
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.15 E-value=3.4e-11 Score=75.56 Aligned_cols=60 Identities=32% Similarity=0.378 Sum_probs=52.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+.+.+..+....++... +..+ +++||+++.|++++|..|.+.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 118 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMF-IETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEE-EEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CCCcEEEEEECCcccccCcCCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHhh
Confidence 57999999999999876677778888888888 8899 999999999999999999876643
No 64
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.15 E-value=1.7e-10 Score=71.27 Aligned_cols=59 Identities=36% Similarity=0.538 Sum_probs=51.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+ +....+....+.+.+ ++++ +++||+++.|++++|.++.+.+.+
T Consensus 107 ~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAA-RTVESRQAQDLARSY-GIPY-IETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp SCCCEEEEEECTTCSC-CCSCHHHHHHHHHHH-TCCE-EEECTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEchhhhh-cccCHHHHHHHHHHc-CCeE-EEecCCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999976 456677788888888 8899 999999999999999999988754
No 65
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.15 E-value=8.9e-11 Score=75.47 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=45.1
Q ss_pred CCCeEEEEEecCCCCC-CCCCCHHHHHHHhhhcCCcceEEEcccCC-CCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLES-EREVDFNEAEEMGEYVPEIHYVMETSAKD-STNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+ .+.+..+++..+++.+ ++.+ +++||++ +.|++++|.+|.+.+.+...
T Consensus 131 ~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 131 RPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN-TLDF-FDVSANPPGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp SCCEEEEEEECC-------CCCHHHHHHHHHHT-TCEE-EECCC-------CHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECcccchhhccCCHHHHHHHHHHc-CCEE-EEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 5899999999999987 6677888888999888 8899 9999999 99999999999998876543
No 66
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=3e-11 Score=75.30 Aligned_cols=59 Identities=39% Similarity=0.406 Sum_probs=50.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++|+++|+||+|+.+.+.+....+..+...+ +.++ +++||+++.|++++|.+|.+.+.
T Consensus 108 ~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 108 ESIPIMLVGNKCDESPSREVQSSEAEALARTW-KCAF-METSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp -CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEE-EECBTTTTBSHHHHHHHHHHTCC
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHh-CCeE-EEecCCCCcCHHHHHHHHHHHHh
Confidence 57999999999999876677777778888888 8899 99999999999999999987653
No 67
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.14 E-value=1.8e-10 Score=74.38 Aligned_cols=59 Identities=25% Similarity=0.275 Sum_probs=50.7
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++|+++|+||+|+.+. +.+..+++..++... +. .+ +++||+++.||+++|..|.+.+.
T Consensus 128 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 128 PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI-SAFGY-LECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT-TCSEE-EECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC-CCcEE-EEeeCCCCCCHHHHHHHHHHHHh
Confidence 48999999999999764 456777788888888 65 89 99999999999999999998775
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.14 E-value=2.8e-10 Score=72.44 Aligned_cols=62 Identities=37% Similarity=0.568 Sum_probs=53.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+ +.+..+.+..+++.+ ++++ +++||+++.|++++|.+|++.+.+...
T Consensus 125 ~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 125 DDVPMVLVGNKCDLPT-RTVDTKQAHELAKSY-GIPF-IETSAKTRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp SCCCEEEEEECTTCSC-CCSCHHHHHHHHHHH-TCCE-EECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred CCCeEEEEEECCcCCc-ccCCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999976 456677888888888 8899 999999999999999999999887654
No 69
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=75.94 Aligned_cols=63 Identities=25% Similarity=0.295 Sum_probs=52.5
Q ss_pred CCCeEEEEEecCCCCCCC------------CCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESER------------EVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++|+||+|+.+.. .+..+++..+++.+ +. .+ +++||++|.||+++|..|++.+.+...
T Consensus 137 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 137 KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV-GAVAY-LECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE-EECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc-CCCEE-EEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 579999999999997542 56677788888888 65 89 999999999999999999998876543
No 70
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=2.9e-10 Score=72.35 Aligned_cols=62 Identities=29% Similarity=0.321 Sum_probs=53.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+ +.+..+.+..++..+ ++.+ +++||+++.|++++|.+|.+.+.+...
T Consensus 120 ~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 120 NDIVNMLVGNKIDKEN-REVDRNEGLKFARKH-SMLF-IEASAKTCDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp SCCEEEEEEECTTSSS-CCSCHHHHHHHHHHT-TCEE-EECCTTTCTTHHHHHHHHHHHHHTSGG
T ss_pred CCCcEEEEEECCcCcc-cccCHHHHHHHHHHc-CCEE-EEecCCCCCCHHHHHHHHHHHHHhhhh
Confidence 5799999999999953 456777788888888 8899 999999999999999999999876543
No 71
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.12 E-value=2.8e-10 Score=74.91 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=48.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHH---HHHHHhhhcCC--cceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFN---EAEEMGEYVPE--IHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~---~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
+++|+++|+||+|+.+.+.+... ....+.... + ..+ +++||++|.||+++|.+|++.+.+..
T Consensus 141 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 141 SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV-KNPIKF-SSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp -CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC-CSCEEE-EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc-CCCceE-EEEecccCCCHHHHHHHHHHHHHHHH
Confidence 37999999999999876666554 345556665 5 789 99999999999999999999887654
No 72
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.11 E-value=2.2e-10 Score=74.22 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=52.1
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
+++|+++|+||+|+.+. +.+..+.+..++... +. .+ +++||+++.||+++|..|++.+.+..
T Consensus 128 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 128 PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI-QAYDY-LECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE-EECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc-CCCEE-EEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 48999999999999754 446677778888887 55 89 99999999999999999999887543
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.10 E-value=5.3e-10 Score=71.20 Aligned_cols=60 Identities=28% Similarity=0.385 Sum_probs=51.9
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
++|+++|+||+| ...+.+..+++..++..+ ++.+ +++||+++.|++++|.+|.+.+.++.
T Consensus 147 ~~piilv~NK~D-~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 147 NYIIILVANKID-KNKFQVDILEVQKYAQDN-NLLF-IQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCEEEEEEECTT-CC-CCSCHHHHHHHHHHT-TCEE-EEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCC-cccccCCHHHHHHHHHHc-CCcE-EEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 489999999999 444567778888888888 8899 99999999999999999999887654
No 74
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.09 E-value=9.9e-11 Score=74.47 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCcceEEEcccC-CCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEIHYVMETSAK-DSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~lf~~l~~~i~~ 71 (106)
+++|+++|+||+|+.+. +.+..+++..+++.++...+ +++||+ ++.||+++|..+++.+.+
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 110 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY-IECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE-EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEE-EEeeecCCCcCHHHHHHHHHHHHhc
Confidence 57999999999999742 45777888888888723789 999999 689999999999988764
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.08 E-value=9.4e-11 Score=73.93 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=49.4
Q ss_pred CCCeEEEEEecCCCCCCCC----------CCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESERE----------VDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
+++|+++|+||+|+.+.+. +..+++..++..+ +. .+ +++||+++.|++++|..+++.+.
T Consensus 111 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 111 PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI-GAPAY-IECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH-TCSEE-EECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc-CCCEE-EEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999965433 3667778888888 64 89 99999999999999999988764
No 76
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.08 E-value=2.5e-10 Score=72.10 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=51.4
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+++|+++|+||+|+.+. +.+..+++..++..+ +. ++ +++||++|.|++++|..+.+.+.+.
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 108 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY-LECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE-EECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc-CCcEE-EEecCCCccCHHHHHHHHHHHHhcc
Confidence 48999999999999653 456777788888888 65 89 9999999999999999999887543
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.07 E-value=1.8e-10 Score=73.61 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=46.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHH-H-----hhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEE-M-----GEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+... .++... + ++.. ++.+ +++||+++.||+++|.+|++.+.+...
T Consensus 126 ~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 126 GRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDH-PFVI-FASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp CBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTS-CEEE-EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCC-eeEE-EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 3899999999999976432 222211 1 1345 7789 999999999999999999999987755
No 78
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.07 E-value=8.1e-11 Score=76.34 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=51.6
Q ss_pred CCCeEEEEEecCCCCCCCC--------CCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESERE--------VDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++|+||+|+.+.+. +..+++..++..+ +. .+ +++||+++.||+++|..+++.+.+...
T Consensus 112 ~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 112 PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI-GAAAY-IECSSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH-TCSEE-EECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc-CCceE-EEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence 4899999999999975432 3667778888888 64 89 999999999999999999998876644
No 79
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.05 E-value=2.3e-10 Score=74.49 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=51.0
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCcceEEEcccC-CCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEIHYVMETSAK-DSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~lf~~l~~~i~~ 71 (106)
+++|+++|+||+|+.+. +.+..+++..+++.++...+ +++||+ ++.||+++|..+++.+.+
T Consensus 131 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY-IECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE-EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE-EEeeeccCCcCHHHHHHHHHHHHhh
Confidence 57999999999999742 45777888888888723689 999999 689999999999988765
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.04 E-value=1.6e-10 Score=74.91 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=48.5
Q ss_pred CCCeEEEEEecCCCCCCC------------CCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER------------EVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+++|+++|+||+|+.+.. .+..+++..+++..+..++ +++||++|.||+++|.++.+.+
T Consensus 133 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 133 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY-LECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE-EECCTTTCTTHHHHHHHHHHTT
T ss_pred CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE-EEeeCCCCCCHHHHHHHHHHHh
Confidence 589999999999997543 2667778888888833469 9999999999999999998754
No 81
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.04 E-value=5.9e-10 Score=70.67 Aligned_cols=60 Identities=22% Similarity=0.146 Sum_probs=47.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc-------ceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI-------HYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.... .+....+++.+ +. .+ +++||++|.||+++|.++++.+.+...
T Consensus 121 ~~~piilv~nK~Dl~~~~---~~~~~~~~~~~-~~~~~~~~~~~-~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNV---QEVINFLAEKF-EVPLSEIDKVF-IPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp TTCCEEEEEECGGGCSCH---HHHHHHHHHHH-TCCGGGHHHHE-EECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred cCCceEEEeehHhccCcH---HHHHHHHHHHh-hhhhhccCCcE-EEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 579999999999997543 44566666666 43 48 999999999999999999998877654
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.03 E-value=7e-11 Score=73.38 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=41.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+++|+++|+||+|+.+.. .......... .. ++++ +++||+++.|++++|.++++.+.++
T Consensus 100 ~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 100 RDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHR-NWYI-QATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp TTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSC-CEEE-EECBTTTTBTHHHHHHHHHHHC---
T ss_pred cCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCc-cEEE-EEcccCCCcCHHHHHHHHHHHHhhc
Confidence 589999999999997532 2233222221 23 4578 9999999999999999999887654
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.02 E-value=1.7e-10 Score=72.00 Aligned_cols=59 Identities=27% Similarity=0.281 Sum_probs=44.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHH-H----hhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEE-M----GEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+.+... ...... + .... ++.+ +++||+++.|++++|.++++.+.++
T Consensus 107 ~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 107 RKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDR-KWQI-FKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTS-CEEE-EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCC-ceEE-EECcCCCCcCHHHHHHHHHHHHhhc
Confidence 6899999999999975432 222222 2 2233 5679 9999999999999999999888653
No 84
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.02 E-value=1.5e-11 Score=79.23 Aligned_cols=62 Identities=39% Similarity=0.666 Sum_probs=45.4
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
..++|+++|+||+|+.+.+.+..+.+..++..+ ++++ +++||+++.||+++|.+|++.+.++
T Consensus 136 ~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 136 SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPF-LETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp -CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT-TCCB-CCCCC---HHHHHHHHHHTTTTTTT
T ss_pred cCCCCEEEEEECccCCccccCCHHHHHHHHHHc-CCeE-EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 358999999999999876666655667788888 8899 9999999999999999998766543
No 85
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.00 E-value=8.5e-11 Score=73.74 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=45.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+...+.+.. .+..+++.+ +.++ +++||++|.||+++|..+++.+
T Consensus 107 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~-~~~~-~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 107 MGANLLLALNKMDLAKSLGIEI-DVDKLEKIL-GVKV-VPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHH-TSCE-EECBGGGTBSHHHHHHHHHHHT
T ss_pred cCCCEEEEEEchHhccccChhh-HHHHHHHHh-CCCE-EEEEcCCCCCHHHHHHHHHHHh
Confidence 4799999999999864333332 356677777 7889 9999999999999999998765
No 86
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.99 E-value=4.5e-10 Score=75.53 Aligned_cols=58 Identities=28% Similarity=0.348 Sum_probs=46.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|++||+||+||.+.+.+ +.+..++....++.+ +++||+++.||+++|.+|++.+.
T Consensus 197 ~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~-~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQV-VETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCE-EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeE-EEEECCCCCCHHHHHHHHHHHhc
Confidence 57999999999999654433 455666655227789 99999999999999999988764
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.98 E-value=8.2e-10 Score=71.30 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=44.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc----------------CCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV----------------PEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++|+||+|+.+ .+..+++..+.... ....+ +++||++|.||+++|.+|++.
T Consensus 125 ~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 125 ANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV-FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE-EECBTTTTBSHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE-EEEECCCCCCHHHHHHHHHHh
Confidence 5799999999999975 45666666665421 14679 999999999999999998754
No 88
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.97 E-value=3.6e-10 Score=72.65 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=45.2
Q ss_pred CCCCeEEEEEecCCCCCC-------CCCCHHHHHHHhh----hcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESE-------REVDFNEAEEMGE----YVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~-------~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.+++|++||+||+||.+. +.+....+..++. .+ ++.+ +++||++ .||+++|..+++.+
T Consensus 127 ~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~-~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 127 NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL-HLSF-YLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS-CEEE-EEECTTS-THHHHHHHHHHHHT
T ss_pred CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC-Ccce-EEEEech-hhHHHHHHHHHHHh
Confidence 358999999999998642 2333444555666 56 7889 9999999 99999999998765
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.96 E-value=1e-09 Score=70.37 Aligned_cols=56 Identities=18% Similarity=0.070 Sum_probs=44.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc-----------CCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV-----------PEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++|+||+|+.+ .+..++...+.... .+..+ +++||+++.||+++|.+|++.
T Consensus 123 ~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEV-FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEE-EECBTTTTBSHHHHHHHHHTT
T ss_pred cCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEE-EEeECCcCCCHHHHHHHHHhh
Confidence 6799999999999975 45566666655431 15679 999999999999999998753
No 90
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.96 E-value=5.1e-10 Score=71.12 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=45.7
Q ss_pred CCCeEEEEEecCCCCCCCC--CCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESERE--VDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+... ...+....+....+..++ +++||+++.||+++|.+|.+.+.+
T Consensus 132 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 132 LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI-IPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE-EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce-EEEecCCCCCHHHHHHHHHHHhhc
Confidence 4689999999999974332 222334555555435789 999999999999999999987754
No 91
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.96 E-value=3.6e-10 Score=71.96 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=44.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHh-----hhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMG-----EYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++|+++|+||+|+.+.. ...+..... ... ++.+ +++||+++.|++++|.++.+.+.++.
T Consensus 122 ~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 122 RKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNR-TWTI-VKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp TTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSS-CEEE-EECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCC-ceEE-EEccCCCccCHHHHHHHHHHHHHhcc
Confidence 589999999999997542 222222221 223 4578 99999999999999999999887654
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.94 E-value=2e-10 Score=73.76 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=42.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|+++|+||+|+.+.. ..++...... .. ++.+ +++||+++.||+++|.+|++.+.
T Consensus 129 ~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~-~~~~-~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 129 RDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSR-TWYV-QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSC-CEEE-EECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCC-ceEE-EECcCCCcCCHHHHHHHHHHHHh
Confidence 579999999999997532 2233222211 22 4578 99999999999999999988764
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.94 E-value=2.2e-09 Score=68.17 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=42.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHh-----hhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMG-----EYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+.+.. ..++..... ... +..+ +++||++|.||+++|.++++.+.++
T Consensus 116 ~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDR-VWQI-QSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp TTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSS-CEEE-EECCTTTCTTHHHHHHHHHHTC---
T ss_pred cCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCC-ceEE-EEccCCCCCCHHHHHHHHHHHHHhc
Confidence 679999999999997543 233333222 123 4678 9999999999999999998877554
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.93 E-value=4.3e-09 Score=66.65 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=45.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+.+.. ..+....... .. ++++ +++||+++.|++++|.++.+.+.++
T Consensus 118 ~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSH-HWRI-QGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSS-CEEE-EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCC-ceEE-EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 579999999999997543 2333333322 23 5689 9999999999999999999888654
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.92 E-value=1.6e-09 Score=74.24 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=51.4
Q ss_pred CCCeEEEEEecCCCCCC------------CCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESE------------REVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
+++|+++|+||+|+.+. +.+..+.+..+++.. +. .+ +++||++|.||+++|..|++.+..
T Consensus 258 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 258 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY-LECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE-EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc-CCcEE-EEecCCCCcCHHHHHHHHHHHHhc
Confidence 38999999999999653 457778888888888 65 89 999999999999999999988754
No 96
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.45 E-value=1.2e-10 Score=75.26 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=46.2
Q ss_pred CCeEEEEEecCCCCCCC------------CCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESER------------EVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
++|+++|+||+|+.+.. .+..+.+..+++.+ +. ++ +++||++|.||+++|..|++.+
T Consensus 134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~-~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY-LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 79999999999997532 34445566677777 65 89 9999999999999999998765
No 97
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.92 E-value=5.8e-10 Score=72.85 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=49.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++|+||+|+.+... .. ....++... +..+ +++||+++.||+++|.+|.+.+.....
T Consensus 118 ~~~p~ilv~nK~Dl~~~~~-~~-~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 118 ENIPIVLCGNKVDIKDRKV-KA-KSIVFHRKK-NLQY-YDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp TTCCEEEEEECTTSSSCSS-CG-GGCCHHHHH-TCEE-EECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred CCCCEEEEEECCccccccc-cH-HHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 4799999999999975432 22 345566667 7899 999999999999999999999887654
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.92 E-value=5.8e-10 Score=71.04 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=45.8
Q ss_pred CCCeEEEEEecCCCCCCCCCC---HHHHHHHhhhcCCcc----eEEEcccCCCC-CHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVD---FNEAEEMGEYVPEIH----YVMETSAKDST-NVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~----~~~~~Sa~~~~-~v~~lf~~l~~~i~~~~~ 74 (106)
+++|+++||||+|+.+.+.+. ...+..+++.+ +.. + +++||+++. ++++++..+.+.+.+.+.
T Consensus 111 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 111 SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKR-GFPAIRDY-HFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCT-TSCEEEEE-EECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhc-CCcchhhe-EEEecccCchhHHHHHHHHHHHHhcccc
Confidence 579999999999997533221 12334555556 555 8 999999997 999999999888876543
No 99
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.92 E-value=3.8e-09 Score=67.29 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=44.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+. ...++...+.. .. ++.+ +++||+++.||+++|.+|.+.+.+
T Consensus 125 ~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 125 RRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDK-PWHI-CASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp SCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSS-CEEE-EECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCC-ceEE-EEccCCCCcCHHHHHHHHHHHHHH
Confidence 58999999999999753 34445554442 23 5689 999999999999999999887654
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.91 E-value=6.4e-09 Score=65.54 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc----CCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYV----PEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
..++|+++|+||+|+.+. ...++........ .++.+ +++||+++.|++++|.+|.+.+.+++
T Consensus 117 ~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~-~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 117 LQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSI-VASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp TSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEE-EEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEE-EEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 368999999999999753 2344444433211 14578 99999999999999999999887653
No 101
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.89 E-value=1.9e-09 Score=68.70 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=43.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCH--HHHHH-HhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDF--NEAEE-MGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|+++|+||+|+.+.+.+.. +.... +.... +..+ +++||+++.||+++|.+|.+.+.
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP-EDEL-ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT-TSEE-EECCTTTCTTHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccC-CCce-EEEEccCCCCHHHHHHHHHHHhc
Confidence 5789999999999976443221 22222 32233 6789 99999999999999999988763
No 102
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.86 E-value=1.9e-08 Score=64.68 Aligned_cols=64 Identities=41% Similarity=0.418 Sum_probs=55.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..+.|+++|+||+|+.+.+.+....+..++... ++.+ +++||+++.|++++|..+.+.+.+...
T Consensus 108 ~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~-~~~~-~d~Sal~~~~i~~l~~~l~~~~~~~~~ 171 (199)
T 2f9l_A 108 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN-NLSF-IETSALDSTNVEEAFKNILTEIYRIVS 171 (199)
T ss_dssp CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEE-EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEECcccccccCcCHHHHHHHHHHc-CCeE-EEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 357899999999999866667777788888887 8889 999999999999999999998887654
No 103
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.85 E-value=1.1e-08 Score=65.04 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=44.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+.+. ...++...... .. ++.+ +++||+++.|++++|.+|++.+...
T Consensus 116 ~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDH-QWHI-QACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSS-CEEE-EECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred CCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCC-CcEE-EEccCCCCcCHHHHHHHHHHHHHHH
Confidence 67999999999999753 33444433322 23 5689 9999999999999999999877544
No 104
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.84 E-value=6.3e-10 Score=70.58 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=49.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
..++|+++|+||+|+...+.+. .....+.+.+ +..+ +++||+++.|++++|..+++.+.+..
T Consensus 110 ~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~-~~~~-~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 110 EMGANLLLALNKMDLAKSLGIE-IDVDKLEKIL-GVKV-VPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp TTTCCEEEEEECHHHHHHTTCC-CCHHHHHHHH-TSCE-EECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred hcCCCEEEEEEhhhccccccch-HHHHHHHHHh-CCCe-EEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 3578999999999986443333 2456677777 7899 99999999999999999998886554
No 105
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.83 E-value=6.2e-10 Score=71.04 Aligned_cols=58 Identities=26% Similarity=0.186 Sum_probs=42.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+.. .......... .. +..+ +++||+++.||+++|.+|++.+.+
T Consensus 123 ~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDR-EICC-YSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSS-CEEE-EECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccC-CeeE-EEEECCCCCCHHHHHHHHHHHHHh
Confidence 689999999999997532 2333222221 23 5678 999999999999999999876644
No 106
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.83 E-value=7.2e-09 Score=65.60 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=41.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|+++|+||+|+.+. ...++...... .. ++.+ +++||+++.||+++|.+|++.
T Consensus 121 ~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~-~~~~-~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 121 RKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDH-QWHI-QACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSS-CEEE-EECBTTTTBTHHHHHHHHHTC
T ss_pred CCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCC-ceEE-EEccCCCCcCHHHHHHHHHhh
Confidence 68999999999999753 23444444332 23 5689 999999999999999998754
No 107
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.83 E-value=9.7e-10 Score=67.84 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=41.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+.+.. +.+..+. .+ +. .+ +++||+++.|++++|.++++.+
T Consensus 107 ~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~-~~~~~-~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 107 KGKPVILVATKVDDPKHE----LYLGPLY-GL-GFGDP-IPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp HTCCEEEEEECCCSGGGG----GGCGGGG-GG-SSCSC-EECBTTTTBSHHHHHHHHHHHC
T ss_pred cCCCEEEEEECcccccch----HhHHHHH-hC-CCCCe-EEEecccCCChHHHHHHHHHhC
Confidence 478999999999997532 2233344 45 45 79 9999999999999999998764
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.82 E-value=1.6e-08 Score=63.37 Aligned_cols=61 Identities=11% Similarity=-0.039 Sum_probs=44.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcC------C--cceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVP------E--IHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+. ..+.......... + ..+ +++||+++.||+++|.+|++.+.....
T Consensus 106 ~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 106 ANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIF-CKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp GSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEE-EECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccE-EEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 57899999999999753 2223332222210 1 578 999999999999999999988776644
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.79 E-value=2e-09 Score=74.95 Aligned_cols=59 Identities=22% Similarity=0.172 Sum_probs=43.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+++|++||+||+|+.+... .+....... .. ++.+ +++||+++.||+++|..|++.+.++
T Consensus 265 ~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~-~~~~-~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 265 RDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHR-NWYI-QATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp TTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSS-CEEE-EECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred CCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcC-CCEE-EEEECCCCcCHHHHHHHHHHHHHhc
Confidence 5899999999999975432 233322221 12 4578 9999999999999999999887543
No 110
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.77 E-value=1.8e-09 Score=69.97 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=20.3
Q ss_pred CcceEEEcccCCC------CCHHHHHHHHHHH
Q psy5780 43 EIHYVMETSAKDS------TNVEEAFYCLANE 68 (106)
Q Consensus 43 ~~~~~~~~Sa~~~------~~v~~lf~~l~~~ 68 (106)
...| +++||++| .||+++|.+|++.
T Consensus 183 ~~~~-~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 183 KVEF-LECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CEEE-EECBCC-------CCBCHHHHHHHHHH
T ss_pred cEEE-EEeeccCCCccccccChHHHHHHHHHh
Confidence 4569 99999999 9999999999875
No 111
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.77 E-value=5.1e-09 Score=72.10 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCC--cceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPE--IHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|++||+||+||.+.+.+ ++...+++.+ . +.+ +++||+++.||+++|..+..
T Consensus 114 ~~~piilv~NK~DL~~~~~v--~~~~~~~~~~-~~~~~~-~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 114 NELETVMVINKMDLYDEDDL--RKVRELEEIY-SGLYPI-VKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp TTCEEEEEECCGGGCCHHHH--HHHHHHHHHH-TTTSCE-EECCTTTCTTHHHHHHHHSS
T ss_pred CCCCEEEEEeHHHcCCchhH--HHHHHHHHHH-hhhCcE-EEEECCCCcCHHHHHHHhcC
Confidence 57999999999999754322 3355666666 5 789 99999999999999987764
No 112
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.76 E-value=1.1e-09 Score=76.63 Aligned_cols=61 Identities=28% Similarity=0.314 Sum_probs=47.7
Q ss_pred CCCCeEEEEEecCCCCCC-------CCCCHHHHHHHhhh----cCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESE-------REVDFNEAEEMGEY----VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+++|+++||||+||.+. +.+..+.+..+++. + ++.| |+|||++ .+|.++|..+++.+..+
T Consensus 104 ~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~-~i~f-~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 104 NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGV-QVSF-YLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCC-CEEE-ECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccccc-CceE-EEeccCC-CcHHHHHHHHHHHHHhh
Confidence 368999999999999754 23555556666664 5 7899 9999998 59999999998766544
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.76 E-value=9.6e-09 Score=75.53 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=48.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
++.|+|+|+||+|+.+.+.+..+....+.... +.++ +++||++|.||+++|..+++.+...
T Consensus 149 ~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~-~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 149 GKSPVIVVMNKIDENPSYNIEQKKINERFPAI-ENRF-HRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG-TTCE-EECCC-----CTTHHHHHHHHHTCT
T ss_pred CCCCEEEEEECCCcccccccCHHHHHHHHHhc-CCce-EEEecCcccCHHHHHHHHHHHHhcc
Confidence 46999999999999877777777788888888 7889 9999999999999999999887654
No 114
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.75 E-value=3.8e-08 Score=63.02 Aligned_cols=59 Identities=41% Similarity=0.452 Sum_probs=51.2
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
..+.|+++|+||+||.+.+.+....+..++... ++.+ +++||+++.+++++|+.|.+.+
T Consensus 132 ~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~-~~~~-ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN-GLSF-IETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEE-EECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECcccccccccCHHHHHHHHHHc-CCEE-EEEeCCCCCCHHHHHHHHHHHh
Confidence 357899999999999866666777788888888 8899 9999999999999999998765
No 115
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.73 E-value=2.2e-08 Score=72.40 Aligned_cols=64 Identities=16% Similarity=0.058 Sum_probs=49.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc----CCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYV----PEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+.+....++........ ++.++ +++||++|.||+++|..+.+.+.....
T Consensus 305 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 305 AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI-LFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE-EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE-EEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 57899999999999876655555554444332 24689 999999999999999999988866644
No 116
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.71 E-value=4.5e-09 Score=74.08 Aligned_cols=62 Identities=24% Similarity=0.239 Sum_probs=49.4
Q ss_pred CCCeEEEEEecCCCCCCC---------------CCCHHHHHHHhh-----------hcCCcceEEEcccCCCCCHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER---------------EVDFNEAEEMGE-----------YVPEIHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~~v~~lf~ 63 (106)
.++|+|||+||+||...+ .+..+++..++. .. .+.+ ++|||+++.||.++|.
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~-~~~~-~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTK-EIYT-HFTCATDTKNVQFVFD 336 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTC-CEEE-EECCTTCHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCC-ceEE-EEEECcCchhHHHHHH
Confidence 579999999999985321 255667777765 24 6788 9999999999999999
Q ss_pred HHHHHHHHhh
Q psy5780 64 CLANELKNRQ 73 (106)
Q Consensus 64 ~l~~~i~~~~ 73 (106)
++++.+.+..
T Consensus 337 ~v~~~i~~~~ 346 (353)
T 1cip_A 337 AVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.70 E-value=3.8e-09 Score=66.76 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=40.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+... .++... +..+ +++||+++.||+++|..|.+.+..
T Consensus 114 ~~~p~ilv~NK~Dl~~~~~-------~~~~~~-~~~~-~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 114 AKLPITVVRNKADITGETL-------GMSEVN-GHAL-IRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTCCEEEEEECHHHHCCCC-------EEEEET-TEEE-EECCTTTCTTHHHHHHHHHHHC--
T ss_pred cCCCEEEEEECccCCcchh-------hhhhcc-CCce-EEEeCCCCCCHHHHHHHHHHHhhh
Confidence 4799999999999854221 122334 6789 999999999999999999876643
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.67 E-value=8.4e-09 Score=69.62 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=47.9
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
..++|+++|+||+|+...+.+.. ....+.+.+ ++++ +++||++|.|++++|..+.+.+.
T Consensus 108 ~~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~l-g~~v-i~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 108 EMEKKVILAMTAIDEAKKTGMKI-DRYELQKHL-GIPV-VFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCCEEEEEECHHHHHHTTCCB-CHHHHHHHH-CSCE-EECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCCEEEEEECcCCCCccchHH-HHHHHHHHc-CCCE-EEEEeeCCcCHHHHHHHHHHHhh
Confidence 35799999999999865444332 356677788 8899 99999999999999999988764
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.66 E-value=4.3e-08 Score=67.62 Aligned_cols=63 Identities=16% Similarity=0.040 Sum_probs=49.3
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhc-CCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYV-PEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
..++|+++|+||+|+.............+.+.+ ....+ +++||++|.|++++|..+.+.+.+.
T Consensus 120 ~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i-~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 120 PLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI-VPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp GGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE-EECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred hcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE-EEEeCCCCCCHHHHHHHHHHhCccC
Confidence 357999999999999733444455566676666 24789 9999999999999999998877543
No 120
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.66 E-value=1.4e-08 Score=69.99 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCeEEEEEecCCCCCCCCCC-HHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVD-FNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA 66 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 66 (106)
.++|+++|+||+||.+...+. .+....+++.. ++.+ +++||+++.|++++|..+.
T Consensus 109 ~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-g~~~-~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 109 FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-GYDV-LKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-TCEE-EECCTTTCTTHHHHHHHTT
T ss_pred CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-CCeE-EEEECCCCCCHHHHHhhcc
Confidence 579999999999997533211 23345556667 7889 9999999999999997764
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.65 E-value=1.8e-08 Score=65.54 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=42.7
Q ss_pred CCCeEEEEEecCCCCCCCCCC--HHHHHH-Hhhh-----cCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVD--FNEAEE-MGEY-----VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~--~~~~~~-~~~~-----~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+++|+||+|+.+..... ...... +... ....++ +++||+++.||+++|..|.+.+.....
T Consensus 143 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 143 TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTV-QLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE-EEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeE-EEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 578999999999986532211 111112 2221 126789 999999999999999999988865543
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.65 E-value=7.8e-09 Score=70.39 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=46.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.++|+++|+||+|+...+.+. .....+.+.+ ++++ +++||++|.|++++|..+++.+
T Consensus 106 ~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~l-g~~v-i~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 106 TGIPVTIALNMIDVLDGQGKK-INVDKLSYHL-GVPV-VATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHH-TSCE-EECBTTTTBSHHHHHHHHHHSC
T ss_pred cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHc-CCCE-EEEEccCCCCHHHHHHHHHHHH
Confidence 579999999999986443333 2356677778 8899 9999999999999999997754
No 123
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.63 E-value=4.2e-08 Score=64.01 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=43.2
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHhhhc-CCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 14 SRVWSNKCDLESEREVDFNEAEEMGEYV-PEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 14 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+||+|+.+......+....+...+ ++.++ +++||++|.|++++|..+.+.+..
T Consensus 167 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 167 DLIVINKIDLADAVGADIKKMENDAKRINPDAEV-VLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp SEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEE-EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEeccccCchhHHHHHHHHHHHHHhCCCCeE-EEEEecCCCCHHHHHHHHHHHHHh
Confidence 3999999998643334455555555543 25689 999999999999999999887754
No 124
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.61 E-value=6.9e-09 Score=75.43 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=42.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhh-----hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGE-----YVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+|||+||+|+.+.. .......... .. ++.+ +++||++|.||+++|++|.+.+.+...
T Consensus 422 ~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~-~~~~-~~~SA~~g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 422 RDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDR-NWYV-QPSCATSGDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp TTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSS-CEEE-EECBTTTTBTHHHHHHHHHHHCC----
T ss_pred CCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcC-CeEE-EEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 579999999999997532 2333332221 12 4568 999999999999999999988765544
No 125
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.61 E-value=1.3e-08 Score=71.14 Aligned_cols=62 Identities=23% Similarity=0.185 Sum_probs=49.2
Q ss_pred CCCeEEEEEecCCCCCCC----------------CCCHHHHHHHh----------hhcCCcceEEEcccCCCCCHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER----------------EVDFNEAEEMG----------EYVPEIHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~~~Sa~~~~~v~~lf~ 63 (106)
.++|++|++||+||.+.+ ....+.+..+. ... ++.+ ++|||+++.||..+|.
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~-~i~~-~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDK-IIYS-HFTCATDTENIRFVFA 310 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTS-CEEE-EECCTTCHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccC-CcEE-EEEEeecCHHHHHHHH
Confidence 579999999999986422 35666777663 234 5678 8999999999999999
Q ss_pred HHHHHHHHhh
Q psy5780 64 CLANELKNRQ 73 (106)
Q Consensus 64 ~l~~~i~~~~ 73 (106)
.+++.+.++.
T Consensus 311 ~v~~~Il~~~ 320 (327)
T 3ohm_A 311 AVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.60 E-value=5.9e-08 Score=68.10 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=46.3
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
++|+++|+||+|+..... .+....++... +.++ +++||++|+||+++|.++.+.+...
T Consensus 280 ~~piilV~NK~Dl~~~~~--~~~~~~~~~~~-~~~~-~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 280 DLPFLVVINKIDVADEEN--IKRLEKFVKEK-GLNP-IKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TSCEEEEECCTTTCCHHH--HHHHHHHHHHT-TCCC-EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHH--HHHHHHHHHhc-CCCe-EEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 799999999999865332 23344555566 7889 9999999999999999999888654
No 127
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.55 E-value=2.7e-08 Score=71.61 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=49.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+.+.... +....+.+.+ +.++ +++||+++.|++++|..|.+.+.+.
T Consensus 139 ~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~-g~~v-~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 139 MEIPFVVVVNKIDVLGEKAE--ELKGLYESRY-EAKV-LLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TTCCEEEECCCCTTTTCCCT--HHHHHSSCCT-TCCC-CCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred cCCCEEEEEeCcCCCCccHH--HHHHHHHHHc-CCCE-EEEECCCCCCHHHHHHHHHHhhhhh
Confidence 47999999999999865543 4566677777 7899 9999999999999999999888554
No 128
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.55 E-value=2.4e-08 Score=70.61 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=47.3
Q ss_pred CCCeEEEEEecCCCCCCC----------------CCCHHHHHHHh--------h---hcCCcceEEEcccCCCCCHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER----------------EVDFNEAEEMG--------E---YVPEIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~~~Sa~~~~~v~~lf 62 (106)
.++|+|||+||+||...+ .+..+++..+. . .. .+.+ ++|||+++.||.++|
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~-~~~~-~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQR-PLYH-HFTTAINTENIRLVF 344 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC---CCEE-EECCTTCHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCC-ceEE-EEEecCCchhHHHHH
Confidence 579999999999985321 25566666654 1 23 5678 999999999999999
Q ss_pred HHHHHHHHHhh
Q psy5780 63 YCLANELKNRQ 73 (106)
Q Consensus 63 ~~l~~~i~~~~ 73 (106)
..+.+.+.+..
T Consensus 345 ~~v~~~i~~~~ 355 (362)
T 1zcb_A 345 RDVKDTILHDN 355 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.51 E-value=1.8e-07 Score=67.20 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=46.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHH-HHhhh---cCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAE-EMGEY---VPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.+.|+++|+||+|+.+.+....++.. ...+. ..+.++ +++||++|.||+++|..+.+.+.+..
T Consensus 285 ~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 285 AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI-LFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE-EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE-EEEecccCCCHHHHHHHHHHHHHHhh
Confidence 57999999999999765544332222 22221 226789 99999999999999999988877643
No 130
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.49 E-value=4.5e-08 Score=69.03 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=44.9
Q ss_pred CCCeEEEEEecCCCCCCCC--C-------------------CHHHHHHHhhh---------------cCCcceEEEcccC
Q psy5780 10 SAHDSRVWSNKCDLESERE--V-------------------DFNEAEEMGEY---------------VPEIHYVMETSAK 53 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~--~-------------------~~~~~~~~~~~---------------~~~~~~~~~~Sa~ 53 (106)
+++|++|||||+||.+.+. + ..+++..++.. ...+.+ ++|||+
T Consensus 249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~-~eTSA~ 327 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKI-YRTTAL 327 (354)
T ss_dssp SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEE-EECCTT
T ss_pred CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEE-EEEEee
Confidence 5799999999999853211 1 13445555321 113457 899999
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q psy5780 54 DSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 54 ~~~~v~~lf~~l~~~i~~~~ 73 (106)
++.||.++|.++++.+.+..
T Consensus 328 d~~nV~~vF~~v~~~I~~~~ 347 (354)
T 2xtz_A 328 DQKLVKKTFKLVDETLRRRN 347 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 131
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.44 E-value=1e-07 Score=65.70 Aligned_cols=57 Identities=21% Similarity=0.171 Sum_probs=45.1
Q ss_pred CCCeEEEEEecCCCCC--CCC----CCHHHHHHHhhhcCC---cceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLES--ERE----VDFNEAEEMGEYVPE---IHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~--~~~----~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+++|+++|+||+|+.+ .+. +..+.+..+++.+ + .++ +++||++ .++.++|..+++.+
T Consensus 114 ~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~-g~~~~~~-~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 114 PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF-GFPNLIG-FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT-TCCSCEE-EECCTTS-SHHHHHHHHHHHTT
T ss_pred CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc-CCCCeEE-EEeeecC-ChHHHHHHHHHHHH
Confidence 5899999999999975 332 3445667788887 5 789 9999999 89999998887643
No 132
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.44 E-value=1.1e-07 Score=61.77 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=44.2
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhc-CCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYV-PEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
++|.++|+||+|+.+......+......... +..++ +++||++|.|++++|..|.+.+....
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i-~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKI-IEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEE-EECBTTTTBTHHHHHHHHHHHHC---
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeE-EEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 4789999999998643223445555554443 24688 99999999999999999988775543
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.44 E-value=5.5e-07 Score=65.78 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=43.6
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
+.|+++|+||+|+.+. +..+....+.. + +.++ +++||+++.|++++|..|.+.+..
T Consensus 350 ~~piivV~NK~DL~~~--~~~~~~~~~~~-~-~~~~-i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEK--INEEEIKNKLG-T-DRHM-VKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp TSSEEEEEEECSSCCC--CCHHHHHHHHT-C-STTE-EEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred CCCEEEEEECcccccc--cCHHHHHHHhc-C-CCcE-EEEECCCCCCHHHHHHHHHHHHhh
Confidence 6899999999999653 34444444432 3 4689 999999999999999999987664
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.42 E-value=6.8e-07 Score=64.31 Aligned_cols=62 Identities=23% Similarity=0.172 Sum_probs=44.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHH-HHhhh---cCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAE-EMGEY---VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+.|+++|+||+|+.+.+....+... .+... ..+.++ +++||++|.||+++|..+.+.+...
T Consensus 291 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 291 RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL-IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE-EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE-EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 57899999999999764443333222 12121 225689 9999999999999999998877654
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.42 E-value=5e-08 Score=65.92 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=46.1
Q ss_pred CeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 12 HDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+|+++|+||+|+.+.+.+.. ....+.+.+ +.++ +++||+++.|++++|..+.+.+...
T Consensus 110 ~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~l-g~~~-~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGAKI-DIKKMRKEL-GVPV-IPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp CSEEEEEECHHHHHHHTCCC-CHHHHHHHH-SSCE-EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEChhcCcccccHH-HHHHHHHHc-CCcE-EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999864332222 245666777 8899 9999999999999999998877544
No 136
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.42 E-value=4.1e-08 Score=66.21 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=45.7
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+...++|+++|+||+|+.+.+.+.. ....+.+.+ +.++ +++||++|.|++++|..+.+.
T Consensus 106 l~~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~l-g~~v-i~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 106 LFELGKPVVVALNMMDIAEHRGISI-DTEKLESLL-GCSV-IPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HTTSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHH-CSCE-EECBGGGTBSHHHHHHHHHTC
T ss_pred HHHcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHc-CCCE-EEEECCCCCCHHHHHHHHHhh
Confidence 3446899999999999864333221 234466777 8899 999999999999999999765
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.36 E-value=2.4e-07 Score=65.04 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=45.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCC--cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPE--IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+... .+....+.+.+ . ..+ +++||+++.|++++|..|.+.+.+.
T Consensus 273 ~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l-~~~~~v-~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEA----AENLEAFKEKL-TDDYPV-FPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp TTSCBCBEEECTTSTTH----HHHHHHHHHHC-CSCCCB-CCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred cCCCEEEEEECccCCCC----HHHHHHHHHHh-hcCCCE-EEEECCCCcCHHHHHHHHHHHHhhC
Confidence 47899999999998642 23345565655 3 678 9999999999999999999887544
No 138
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.36 E-value=1e-06 Score=64.23 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=42.5
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
++|+++|+||+|+.+.... ....+.+.. ..++ +++||+++.|++++|.+|.+.+.
T Consensus 343 ~~piIvV~NK~Dl~~~~~~---~~~~l~~~~-~~~~-i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADA---LIRAIADGT-GTEV-IGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TSEEEEEEECTTSCTTTHH---HHHHHHHHH-TSCE-EECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCCEEEEEECcCCCCccch---hHHHHHhcC-CCce-EEEEECCCCCHHHHHHHHHHHHh
Confidence 6899999999999765432 123343432 3578 99999999999999999998886
No 139
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.35 E-value=1e-06 Score=62.31 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=42.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHH----hhhcCCc---ceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEM----GEYVPEI---HYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
.+.|+++|+||+||.+.. ...+....+ ++.. ++ .+ +.+||+++.|+++++..+.+..
T Consensus 95 ~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~~~-g~~~~~v-~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 95 GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAKQL-GLKPEDV-FLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHHHT-TCCCSEE-EECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHHHc-CCCcccE-EEEeCCCCcCHHHHHhhhhhhc
Confidence 378999999999997543 233333333 4555 55 78 9999999999999999886543
No 140
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.34 E-value=3.2e-08 Score=67.21 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=44.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|+++|+||+|+.+.+.+. .....+.+.+ +.++ +++||++|.|++++|..+.+.+.
T Consensus 111 ~~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~l-g~~~-i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 111 LGIPCIVALNMLDIAEKQNIR-IEIDALSARL-GCPV-IPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp HTCCEEEEEECHHHHHHTTEE-ECHHHHHHHH-TSCE-EECCCGGGHHHHHHHHHHHTCCC
T ss_pred cCCCEEEEEECccchhhhhHH-HHHHHHHHhc-CCCE-EEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999986433221 1235566777 7899 99999999999999998876553
No 141
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.30 E-value=1.7e-07 Score=66.01 Aligned_cols=62 Identities=16% Similarity=0.049 Sum_probs=38.8
Q ss_pred CCCeEEEEEecCCCCCCCCCCH--HHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVDF--NEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+|+|+||+|+...+.+.. ..+..+...+ ++++ +++||+++.+ ++.|..+.+.+.....
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~-~i~~-~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEH-NIKI-YHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC--CCS-CCCC----------CHHHHHHHHHTCS
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCE-EeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 5799999999999875443332 3455666777 8899 9999999999 8899999888877643
No 142
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.25 E-value=2.9e-07 Score=65.90 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=25.7
Q ss_pred CcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 43 EIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 43 ~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.+.+ ++|||+++.||.++|..+.+.+.+..
T Consensus 358 ~~~~-~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 358 YCYP-HFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp CEEE-EECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccEE-EEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 4567 89999999999999999988887653
No 143
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.22 E-value=3.1e-07 Score=63.25 Aligned_cols=61 Identities=16% Similarity=0.007 Sum_probs=39.8
Q ss_pred CCCeEEEEEecCCCCCCCCC--CHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 10 SAHDSRVWSNKCDLESEREV--DFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++++++|+||.|+...+.+ ..+.+..+++.+ ++.+ +++||+++ |++++|..+++.+....
T Consensus 154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~-~~~~-~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEH-NIKI-YHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHT-TCCC-CCCC----------CHHHHHHHHTTC
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHc-CCeE-EecCCccc-cccHHHHHHHHHhhcCC
Confidence 45799999999998753322 224556777888 8899 99999999 99999999999887654
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.22 E-value=2.3e-06 Score=61.04 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=37.0
Q ss_pred CeEEEEEecCCCCCCCCC--CHHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREV--DFNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.|+++|+||+|+.+.... ..++...+.... ...++ +++||++|.|++++++.|.+.++
T Consensus 136 ~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~-i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 136 DKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPI-IPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCE-EEC------CHHHHHHHHHHHSC
T ss_pred CeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeE-EEeeCCCCCCHHHHHHHHHHhCC
Confidence 379999999999764332 234445555542 25689 99999999999999999987654
No 145
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.19 E-value=1.3e-06 Score=60.01 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=44.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
..+.|+++|+||+|+...+....+....+.+.+ +. .+ +.+||+++.|++++++.+.+.++.
T Consensus 114 ~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~-~~~~~-i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 114 EGKAPVILAVNKVDNVQEKADLLPHLQFLASQM-NFLDI-VPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTS-CCSEE-EECCTTTTTTHHHHHHHHHTTCCB
T ss_pred hcCCCEEEEEECcccCccHHHHHHHHHHHHHhc-CcCce-EEEECCCCCCHHHHHHHHHHhCCc
Confidence 357999999999998752222223345555556 44 68 999999999999999998876543
No 146
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.19 E-value=3.9e-07 Score=62.78 Aligned_cols=56 Identities=23% Similarity=0.127 Sum_probs=40.7
Q ss_pred CCeEEEEEecCCCCCCCC-CCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESERE-VDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
++|+++|+||+|+.+... + .+....+ .+...+ +++||+++.|++++|..+.+.+++
T Consensus 117 ~~p~ilV~NK~Dl~~~~~~~-~~~~~~~---~~~~~~-~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKYPEEA-MKAYHEL---LPEAEP-RMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TSCEEEEEECGGGCSSHHHH-HHHHHHT---STTSEE-EECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CCCEEEEEECcccCCchHHH-HHHHHHh---cCcCcE-EEEeCCCCCCHHHHHHHHHHhccc
Confidence 799999999999864322 1 1122222 324578 999999999999999999876643
No 147
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.19 E-value=2.5e-06 Score=63.81 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc---ceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI---HYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+|+|+||+|+.+.. .......+.+.+ +. .+ +++||++|.||+++|+.+.+.++.
T Consensus 122 ~~ipiIvViNKiDl~~a~--~~~v~~ei~~~l-g~~~~~v-i~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAAD--PERVAEEIEDIV-GIDATDA-VRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TTCEEEEEEECTTSTTCC--HHHHHHHHHHHT-CCCCTTC-EEECTTTCTTHHHHHHHHHHHSCC
T ss_pred CCCCEEEeeeccCccccc--HHHHHHHHHHHh-CCCcceE-EEeecccCCCchhHHHHHhhcCCC
Confidence 478999999999997533 233344555555 44 58 999999999999999999887654
No 148
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.16 E-value=3.3e-06 Score=59.66 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=41.1
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHH----hhhcCCc---ceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEM----GEYVPEI---HYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
+.|+++|+||+||.+.. ...+....+ ++.. +. .+ +.+||+++.|+++++..+.+..
T Consensus 98 ~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~~~-g~~~~~v-~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAEEL-GLCPVDV-CLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHHTT-TCCCSEE-EECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHHHc-CCCcccE-EEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999997542 223333333 4455 54 68 9999999999999998886544
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.16 E-value=2e-06 Score=61.80 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=42.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHH-HHHhhhcCCc-ceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEA-EEMGEYVPEI-HYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+++|+||+|+.+. . .... ..+. .. +. .+ +++||++|.|++++|+.+++.+++.
T Consensus 109 ~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~l-g~~~~-~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 109 STVDTILVANKAENLRE--F-EREVKPELY-SL-GFGEP-IPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GG-SSCSC-EECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hc-CCCCE-EEEeccCCCCHHHHHHHHHHhcccc
Confidence 47899999999998531 0 1222 3444 34 44 78 9999999999999999999988754
No 150
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.15 E-value=3.2e-06 Score=63.26 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=44.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCc---ceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEI---HYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.... .......+...+ +. .+ +++||++|.||+++|+.+++.++.
T Consensus 124 ~~ipiIvviNKiDl~~a~--~~~v~~el~~~l-g~~~~~v-i~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 124 QDLVIIPVINKIDLPSAD--VDRVKKQIEEVL-GLDPEEA-ILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp TTCEEEEEEECTTSTTCC--HHHHHHHHHHTS-CCCGGGC-EECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCCEEEEEeccCccccC--HHHHHHHHHHhh-CCCcccE-EEEEeecCCCchHHHHHHHHhccc
Confidence 578999999999997533 223344555555 44 58 999999999999999999887753
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.11 E-value=3.1e-06 Score=61.53 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=41.2
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
+.|+++|+||+|+.+...+. ....+. . ..++ +++||+++.|++++|..|.+.+...
T Consensus 330 ~~piivV~NK~Dl~~~~~~~--~~~~~~--~-~~~~-i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 330 HRPLILVMNKIDLVEKQLIT--SLEYPE--N-ITQI-VHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TSCEEEEEECTTSSCGGGST--TCCCCT--T-CCCE-EEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCCCCcchhhH--HHHHhc--c-CCcE-EEEECCCCCCHHHHHHHHHHHHhcc
Confidence 47999999999997544322 000011 2 5678 9999999999999999999877543
No 152
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.03 E-value=9.4e-07 Score=62.05 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=44.3
Q ss_pred CCCeEEEEEecCCCCCCC---------------CCCHHHHHHHhhhc--------------------------CCcceEE
Q psy5780 10 SAHDSRVWSNKCDLESER---------------EVDFNEAEEMGEYV--------------------------PEIHYVM 48 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~---------------~~~~~~~~~~~~~~--------------------------~~~~~~~ 48 (106)
.++|++|++||+||...+ ....+.+..+.... ..+.+ +
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~-h 305 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT-N 305 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE-E
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE-E
Confidence 579999999999985311 12344444433221 13667 9
Q ss_pred EcccCCCCCHHHHHHHHHHHHHH
Q psy5780 49 ETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 49 ~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
+|||++..||..+|..+.+.|.+
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887
No 153
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.02 E-value=1.7e-06 Score=62.12 Aligned_cols=58 Identities=14% Similarity=0.030 Sum_probs=40.3
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
...++|+++|+||+|+.+... ....+. ..+...+ +++||++|.|++++|+.+.+.+.+
T Consensus 108 ~~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~-~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 108 YRTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEP-YPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TTCCSCEEEEEECCCC---------CCCSSG-GGSSCCC-EECBTTTTBTHHHHHHHHHHTGGG
T ss_pred HHcCCCEEEEEECccCccchh----hHHHHH-HcCCCCe-EEEeCcCCCChHHHHHHHHHhcCc
Confidence 456899999999999864321 111222 2312378 999999999999999999887764
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.00 E-value=3.9e-06 Score=59.83 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=40.9
Q ss_pred CeEEEEEecCCCCCCCC--CCHHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESERE--VDFNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.|+++|+||+|+.+... ...++...+.... ...++ +++||+++.|++++++.|.+.++
T Consensus 138 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~-i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 138 KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPI-IPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCE-EECBTTTTBSHHHHHHHHHHHSC
T ss_pred CcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeE-EEeeCCCCCCHHHHHHHHHHhCC
Confidence 47899999999875321 1122334444431 25689 99999999999999999987664
No 155
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.00 E-value=8.2e-07 Score=60.17 Aligned_cols=64 Identities=20% Similarity=-0.014 Sum_probs=42.7
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhh--cCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEY--VPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
...+.|+++|+||+|+.+............... .+...+ +++||+++.|++++|..+.+...-.
T Consensus 189 ~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v-~~~SA~~~~gi~~l~~~l~~~~~~~ 254 (299)
T 2aka_B 189 DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV-VNRSQKDIDGKKDITAALAAERKFF 254 (299)
T ss_dssp CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC-CCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE-ECCChhhccccccHHHHHHHHHHHH
Confidence 345789999999999976443222222210001 112467 8999999999999999998755433
No 156
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.99 E-value=8.3e-06 Score=55.68 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=43.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.+.|.++|+||+||.+... .+....+.+.. +.++ +.+||+++.|+++++..+.+.+..+
T Consensus 49 ~~kp~ilVlNK~DL~~~~~--~~~~~~~~~~~-g~~~-i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 49 KNKPRIMLLNKADKADAAV--TQQWKEHFENQ-GIRS-LSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp SSSCEEEEEECGGGSCHHH--HHHHHHHHHTT-TCCE-EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCHHH--HHHHHHHHHhc-CCcE-EEEECCCcccHHHHHHHHHHHHHHH
Confidence 4689999999999975211 12233444455 6788 9999999999999999888777643
No 157
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.99 E-value=1.1e-05 Score=58.00 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=45.6
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
..|.++|+||+|+... ............. +..+ +.+||+++.|+++++..|.+.+.+...
T Consensus 269 ~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~-g~~v-i~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 269 RRPSLVALNKVDLLEE--EAVKALADALARE-GLAV-LPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp HSCEEEEEECCTTSCH--HHHHHHHHHHHTT-TSCE-EECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred cCCEEEEEECCChhhH--HHHHHHHHHHHhc-CCeE-EEEECCCccCHHHHHHHHHHHHHhccc
Confidence 4789999999998643 1222333444455 6789 999999999999999999999876644
No 158
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.98 E-value=3.4e-06 Score=59.13 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=40.6
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhh----------hcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGE----------YVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
++|.++|+||+|+.+..... .....+.. .+ +.++ +.+||++|.|+++++..|.+.+...
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~-~~~v-i~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEAR-LAARELSAAIRLIYPREALW-RPPV-LTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHH-HHHHHHHHHHHHHSTTCCSC-CCCE-EEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHHH-HHHHHHHHHHhhccccccCC-CCce-EEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 36899999999986321111 11111211 12 4678 9999999999999999998887653
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.94 E-value=6.8e-06 Score=59.94 Aligned_cols=60 Identities=17% Similarity=0.048 Sum_probs=42.3
Q ss_pred CCCeEEEEEecCCCCCCCCC--CHHHHHHHhhh---cCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREV--DFNEAEEMGEY---VPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
.++|+++|+||+|+.+.... ..++...+... +...++ +++||++|.|++++++.|.+.+.
T Consensus 124 ~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i-i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 124 FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI-IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE-EECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE-EEEECcCCCCHHHHHHHHHHhhc
Confidence 46899999999999742111 11222333322 114679 99999999999999999998876
No 160
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.93 E-value=1.8e-05 Score=52.55 Aligned_cols=60 Identities=22% Similarity=0.096 Sum_probs=41.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHH----------------------------hhhc-CCcceEEEcccCCCCCHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEM----------------------------GEYV-PEIHYVMETSAKDSTNVEE 60 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~----------------------------~~~~-~~~~~~~~~Sa~~~~~v~~ 60 (106)
.++|+++|+||+|+.....+ .....+ .+.+ +...+ +++||+++.|+++
T Consensus 170 ~~~p~~iv~NK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRV-LYLSAKTREGFED 246 (262)
T ss_dssp HTSCEEEEECCGGGCCHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCC-EECCTTTCTTHHH
T ss_pred cCCCeEEEEecccccccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccc-eEEEecCcccHHH
Confidence 36899999999998643211 111111 1233 13478 9999999999999
Q ss_pred HHHHHHHHHHHh
Q psy5780 61 AFYCLANELKNR 72 (106)
Q Consensus 61 lf~~l~~~i~~~ 72 (106)
++..+.+.+..-
T Consensus 247 l~~~i~~~~~~~ 258 (262)
T 1yrb_A 247 LETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 999998877543
No 161
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.90 E-value=2.5e-06 Score=55.13 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=28.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCC------HHHHHHHhhhcCCcceEEEcccCCCCC
Q psy5780 9 DSAHDSRVWSNKCDLESEREVD------FNEAEEMGEYVPEIHYVMETSAKDSTN 57 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 57 (106)
..++|+++|+||+|+.+...+. .+.+..+.... +..+ +++||+++.+
T Consensus 118 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-~~~Sa~~~~~ 170 (218)
T 1nrj_B 118 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR-KKSL-NEVERKINEE 170 (218)
T ss_dssp TTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH-HHHH-HC--------
T ss_pred cCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH-hccc-cccccccccc
Confidence 3689999999999997655433 23345565666 6789 9999998876
No 162
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.90 E-value=8.2e-06 Score=58.05 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=40.2
Q ss_pred CeEEEEEecCCCCCCCCCC--HHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREVD--FNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.|+++|+||+|+.+..... .++...+.... ...++ +++||++|.|++++|+.|.+.++.
T Consensus 130 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~i-i~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 130 KNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPI-IPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCE-EECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEE-EEEECCCCcChHHHHHHHHHhCCC
Confidence 4899999999997532111 11222233222 14579 999999999999999999876643
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.88 E-value=1.4e-05 Score=56.45 Aligned_cols=60 Identities=7% Similarity=-0.021 Sum_probs=42.8
Q ss_pred CCCeE-EEEEe-cCCCCCCCCCCH--HHHHHHhhhc--CCcceEEE--cccCC---CCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDS-RVWSN-KCDLESEREVDF--NEAEEMGEYV--PEIHYVME--TSAKD---STNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~-ilv~n-K~Dl~~~~~~~~--~~~~~~~~~~--~~~~~~~~--~Sa~~---~~~v~~lf~~l~~~i~~ 71 (106)
.++|. |+|+| |+|+ +...+.. ++...+.+.+ ...++ ++ +||++ +.|+++++..|.+.+..
T Consensus 110 ~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~i-i~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 110 LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWEC-ISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEE-EECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEE-EecccccccCcCCCCHHHHHHHHHhhccc
Confidence 35787 88999 9998 4322111 3344555443 13688 99 99999 99999999999887764
No 164
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.86 E-value=7.1e-06 Score=60.70 Aligned_cols=60 Identities=18% Similarity=0.078 Sum_probs=41.4
Q ss_pred CCCCeEEEEEecCCCCCCCC--CCHHHHHHH---hhhc-CCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESERE--VDFNEAEEM---GEYV-PEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~--~~~~~~~~~---~~~~-~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
..++|+++|+||+|+.+... +.. ....+ ...+ ...++ +++||++|.|++++|+.+...+.
T Consensus 102 ~~~vPiIVViNKiDl~~~~~~~v~~-~l~~~~~~~e~~~~~~~i-v~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 102 DAHVPIVLAINKCDKAEADPEKVKK-ELLAYDVVCEDYGGDVQA-VHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp TTTCCEEECCBSGGGTTTSCCSSSS-HHHHTTSCCCCSSSSEEE-CCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HcCCcEEEEEecccccccchHHHHH-HHHhhhhhHHhcCCCceE-EEEECCCCCCchhHHHHHHHhhh
Confidence 35789999999999964321 121 12221 1222 13578 99999999999999999987654
No 165
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.80 E-value=2.7e-06 Score=61.17 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=31.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCH--HHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 10 SAHDSRVWSNKCDLESEREVDF--NEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++|+|+|+||+|+...+.+.. ..+..++..+ ++.+ +++|++++.+++++|..+...++-.
T Consensus 166 ~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~-~i~~-~~~sa~~~~~v~~~~~~l~~~iPfa 228 (418)
T 2qag_C 166 EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH-KIKI-YEFPETDDEEENKLVKKIKDRLPLA 228 (418)
T ss_dssp TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHH-TCCC-CCCC-----------------CCEE
T ss_pred ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHc-CCeE-EeCCCCCCcCHHHHHHHHHhhCCcc
Confidence 3789999999999865433332 3455566677 8899 9999999999999988887766543
No 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.76 E-value=2.6e-06 Score=57.57 Aligned_cols=60 Identities=12% Similarity=0.013 Sum_probs=32.2
Q ss_pred CCeEEEEEecCCCCCCCCCCH--HHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 11 AHDSRVWSNKCDLESEREVDF--NEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
++|+|+|+||+|+........ .......... ++.+ +.+||+++.|+++++..|.+.++-.
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~-~i~v-~~~sa~~~~~~~~l~~~l~~~~p~~ 205 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH-KIKI-YEFPETDDEEENKLVKKIKDRLPLA 205 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHT-TCCC-CCC-----------CHHHHHTCSEE
T ss_pred cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHc-CCeE-EcCCCCCChhHHHHHHHHhcCCCcE
Confidence 799999999999864222111 1223334456 7889 9999999999999999888766543
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.75 E-value=4.1e-05 Score=56.51 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.9
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 45 HYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 45 ~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
++ |.+||+++.||+++++.+++.++.-
T Consensus 252 PV-~~gSA~~~~GV~~Lld~i~~~~p~p 278 (528)
T 3tr5_A 252 PI-FFGSAINNFGVGELLDAFVKEAPPP 278 (528)
T ss_dssp EE-EECBGGGTBSHHHHHHHHHHHSCCC
T ss_pred EE-EeccccCCccHHHHHHHHHHhCCCC
Confidence 67 8999999999999999999887644
No 168
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.75 E-value=5.7e-06 Score=59.74 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=37.3
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
...++|+++|+||+|+.+.. .....+.... .... +.+||++|.|++++|+.+.+.+..
T Consensus 128 ~~~~~pvilV~NK~D~~~~~----~~~~e~~~lg-~~~~-~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 128 YRTKKPVVLAVNKLDNTEMR----ANIYDFYSLG-FGEP-YPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTCCSCEEEEEECC-------------CCSGGGS-SSSE-EECCTTTCTTHHHHHHHHHTTGGG
T ss_pred HHcCCCEEEEEECccchhhh----hhHHHHHHcC-CCce-EEeecccccchHHHHHHHHhhccc
Confidence 44689999999999986322 1112222222 3467 899999999999999999876643
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.74 E-value=8e-05 Score=52.54 Aligned_cols=64 Identities=19% Similarity=0.058 Sum_probs=43.2
Q ss_pred CCCeEEEEEecCCCCCCCCCC-HHHHHHHhhhc--CCcceEEEcccCCCCCHHHHHHHHHHHHHHhhc
Q psy5780 10 SAHDSRVWSNKCDLESEREVD-FNEAEEMGEYV--PEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 74 (106)
.++|+|+|+||+|+.+..... ...+..+...+ +...+ +++||+++.|+++++..|.+.+.....
T Consensus 291 ~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 291 SGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-IPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-EECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-EEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 578999999999986532100 01121222222 13468 999999999999999999988776544
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.73 E-value=0.00015 Score=54.27 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=25.1
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
.++ +.+||++|.|+++++..+...++...
T Consensus 192 vpv-v~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 192 VSI-IPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp EEE-EECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred ceE-EEEeccCCCCchhHHHHHHhhccccc
Confidence 378 99999999999999999998877543
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.68 E-value=3.8e-05 Score=49.15 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=42.1
Q ss_pred CCCeEEEEEecCCCCCCCC--CCHHHHHHHhhhcC-CcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESERE--VDFNEAEEMGEYVP-EIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|+++|+||+|+.+... .....+..+....+ .+.+ +++||+++.|+++++..|.+.+.+
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV-ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE-EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce-EEEeecCCCCHHHHHHHHHHHHhh
Confidence 4689999999999864321 11223444444441 3567 899999999999999998876644
No 172
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.55 E-value=0.00012 Score=48.54 Aligned_cols=59 Identities=12% Similarity=-0.066 Sum_probs=42.5
Q ss_pred CCCeEEEEEecC-CCCCCCCCCHHHHHHHhhh---cCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKC-DLESEREVDFNEAEEMGEY---VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK~-Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|++|.+||. |++. ..+..+....... ...+.+ +.+||++|+|+.+.++||++.+..
T Consensus 161 ~gapLLVlANKqqDlp~--Ams~~EI~e~L~L~~l~R~W~I-q~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 161 SGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLV-QDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp SCSCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEE-EEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCCeEEEEeCCCcCccC--CCCHHHHHHHcCCcCCCCCEEE-EEeECCCCcCHHHHHHHHHHHHHh
Confidence 578999999996 6753 4555554443321 114567 899999999999999999876643
No 173
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.50 E-value=2.6e-05 Score=55.42 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=40.1
Q ss_pred CCCe-EEEEEecCCCCCCCCC---CHHHHHHHhhhcC----CcceEEEcccCCCCC----------HHHHHHHHHHHHH
Q psy5780 10 SAHD-SRVWSNKCDLESEREV---DFNEAEEMGEYVP----EIHYVMETSAKDSTN----------VEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~----------v~~lf~~l~~~i~ 70 (106)
.++| +++|+||+|+.+.... ...+...+.+.++ ..++ +++||+++.| ++++++.|.+.++
T Consensus 117 ~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 117 IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPI-IVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCE-EECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcE-EEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 4688 6899999998742110 1123445555551 2589 9999999765 7888888776554
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.50 E-value=1.3e-05 Score=58.87 Aligned_cols=57 Identities=21% Similarity=0.124 Sum_probs=37.9
Q ss_pred CCCeEEEEEecCCCCCCC--CCCHHH--HHHHhhhcC-CcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESER--EVDFNE--AEEMGEYVP-EIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~--~~~~~~--~~~~~~~~~-~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
.++|+++++||+|+.+.. .+..+. ...+.+.++ ..++ +++||++|.|++++|+.+..
T Consensus 102 ~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~-v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 102 AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQF-VHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEE-EECCTTTCTTCTTHHHHTTT
T ss_pred cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccE-EEEeeeeccCcchhhhhhhh
Confidence 578999999999996421 111100 000112231 2579 99999999999999998864
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.50 E-value=0.00011 Score=55.62 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=24.5
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++ +.+||+++.||+++|+.+++.++.-
T Consensus 248 ~pv-~~~SA~~~~Gv~~Ll~~i~~~lp~p 275 (665)
T 2dy1_A 248 YPV-ALASGEREIGVLPLLELILEALPSP 275 (665)
T ss_dssp EEE-EECBTTTTBSHHHHHHHHHHHSCCH
T ss_pred eEE-EEeecccCcCHHHHHHHHHHhCCCc
Confidence 468 9999999999999999999887643
No 176
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.47 E-value=8.2e-05 Score=53.60 Aligned_cols=53 Identities=21% Similarity=0.090 Sum_probs=34.6
Q ss_pred CCCe-EEEEEecCCCCCCCC------CCHHHHHHHhhhcC-----CcceEEEcccCCCCCHHHHHH
Q psy5780 10 SAHD-SRVWSNKCDLESERE------VDFNEAEEMGEYVP-----EIHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~lf~ 63 (106)
.++| +|+|+||+|+..... ....+...+.+..+ ..++ +++||++|.|+++++.
T Consensus 153 ~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~-i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 153 AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHF-MPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeE-EEeeccCCcccccccc
Confidence 4577 899999999853210 01122333444431 2468 9999999999998665
No 177
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.45 E-value=2.5e-05 Score=55.58 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=31.0
Q ss_pred CCCe-EEEEEecCCCCCCCCC---CHHHHHHHhhhcC----CcceEEEcccCCCCC
Q psy5780 10 SAHD-SRVWSNKCDLESEREV---DFNEAEEMGEYVP----EIHYVMETSAKDSTN 57 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~ 57 (106)
.++| +++|+||+|+.+.... ...+...+.+.++ ..++ +++||++|.|
T Consensus 126 ~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-i~~SA~~g~~ 180 (405)
T 2c78_A 126 VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPV-IRGSALLALE 180 (405)
T ss_dssp TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCE-EECCHHHHHH
T ss_pred cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCE-EEccHHHhhh
Confidence 4688 8899999999742110 1123444555541 2679 9999999987
No 178
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.43 E-value=0.00012 Score=51.08 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=38.6
Q ss_pred CCeEEEEEecCCCCCCCCCCH--HHHHHHhhhcC------CcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDF--NEAEEMGEYVP------EIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
++|.++|+||+|+.....+.. ..........+ ...+ +.+||++|.|+++++..|.+.+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v-i~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRV-LTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEE-EECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcE-EEeeCCCCCCHHHHHHHHHHHHH
Confidence 468899999999864211110 01111111111 3467 99999999999999999988765
No 179
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.42 E-value=3.9e-05 Score=55.10 Aligned_cols=51 Identities=22% Similarity=0.106 Sum_probs=35.2
Q ss_pred CC-eEEEEEecCCCCCCCC--C--CHHHHHHHhhhcCC-----cceEEEcccCCCCCHHHHHH
Q psy5780 11 AH-DSRVWSNKCDLESERE--V--DFNEAEEMGEYVPE-----IHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 11 ~i-p~ilv~nK~Dl~~~~~--~--~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~lf~ 63 (106)
++ |+|+|+||+|+.+... + ...+...+.+.+ + .++ +++||++|.|++++|.
T Consensus 156 ~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~-g~~~~~~~~-i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 156 GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGI-AFKPTTMAF-VPMSALKGDNVVNKSE 216 (434)
T ss_dssp TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTT-TCCCSEEEE-EECCTTTCTTTSSCCT
T ss_pred CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHh-CCCccCceE-EEEeccCCCCcccccc
Confidence 45 5899999999975221 0 122344555556 4 678 9999999999988543
No 180
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.37 E-value=0.00016 Score=51.03 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=37.1
Q ss_pred CCCeEEEEEecCCCCCCCCC-CHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREV-DFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCL 65 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 65 (106)
.++|.+||.||+||.++... ..+.....+... ++++ +.+||.++.|++++...+
T Consensus 159 ~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~-G~~v-~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 159 LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI-GYRV-LMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-TCCE-EECBTTTTBTHHHHHHHH
T ss_pred cCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-CCcE-EEEecCCCcCHHHHHHhc
Confidence 46889999999999753210 011122334456 7888 999999999999886543
No 181
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.35 E-value=0.00047 Score=47.69 Aligned_cols=59 Identities=12% Similarity=-0.080 Sum_probs=42.7
Q ss_pred CCCeEEEEEec-CCCCCCCCCCHHHHHHHhhh---cCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNK-CDLESEREVDFNEAEEMGEY---VPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 10 ~~ip~ilv~nK-~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++|++|.+|| -|++. ..+..+....... ...+.+ +.+||.+|+|+.+.+++|++.+..
T Consensus 246 ~~apLLVfANKkQDlp~--Ams~~EI~e~L~L~~l~r~W~I-q~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 246 SGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLV-QDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp TTCCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEE-EEEETTTCTTHHHHHHHHHHHSCC
T ss_pred CCCeEEEEeCCcccccC--CCCHHHHHHHcCCccCCCcEEE-EecccCCCcCHHHHHHHHHHHHHh
Confidence 57999999997 58853 4455554443221 114567 999999999999999999987743
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.35 E-value=5.5e-05 Score=52.91 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=42.5
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
...+.|+|+|+||+|+.+...........+.... +..| +.+|+.++.++++.+..+.....
T Consensus 200 ~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~s~~~i~~~~~~~~~~~~ 260 (360)
T 3t34_A 200 DPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKL-KYPW-VGVVNRSQADINKNVDMIAARKR 260 (360)
T ss_dssp CTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCC-SSCC-EEECCCCHHHHHTTCCHHHHHHH
T ss_pred cccCCCEEEEEeCCccCCCcccHHHHHcCccccc-cCCe-EEEEECChHHhccCCCHHHHHHH
Confidence 4457899999999999765544444344344445 6789 99999999888877655444333
No 183
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.33 E-value=0.00012 Score=53.20 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=31.0
Q ss_pred CeEEEEEecCCCCCCCCCCHH----HHHHHhhhcC----CcceEEEcccCCCCCHHH
Q psy5780 12 HDSRVWSNKCDLESEREVDFN----EAEEMGEYVP----EIHYVMETSAKDSTNVEE 60 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~~----~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~ 60 (106)
.|+|+|+||+|+.+......+ ....+....+ ..++ +++||++|.|+++
T Consensus 172 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~-i~iSA~~g~gi~e 227 (483)
T 3p26_A 172 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINW-VPISGFSGEGVYK 227 (483)
T ss_dssp CCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEE-EECCSSSCTTSSS
T ss_pred CcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceE-EEEeeecCCCccc
Confidence 359999999999753322222 2222333221 3578 9999999999875
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.26 E-value=0.0007 Score=46.02 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=38.2
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcc---cCC---CCCHHHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETS---AKD---STNVEEAFYCLANELKN 71 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~S---a~~---~~~v~~lf~~l~~~i~~ 71 (106)
...+.|+++|+||+|+.+......+........+ +..+ +++| +.+ +.|+.+++..+.+.+..
T Consensus 195 ~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 195 DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPL-TLGF-IGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCC-TTCE-EECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccC-CCCe-EEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 3457899999999999754432222222111111 2445 5555 444 78899999888877764
No 185
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.25 E-value=0.00036 Score=45.82 Aligned_cols=59 Identities=5% Similarity=0.044 Sum_probs=38.2
Q ss_pred CeEEEEEecCCCCCCCCCC------HHHHHHHhhhcCCcceEEEcccCCC-----CCHHHHHHHHHHHHHHh
Q psy5780 12 HDSRVWSNKCDLESEREVD------FNEAEEMGEYVPEIHYVMETSAKDS-----TNVEEAFYCLANELKNR 72 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~~-----~~v~~lf~~l~~~i~~~ 72 (106)
.|+++|+||+|+.+...+. .+.+..+.+.+ +..+ +.++.+.+ .+|.++|..+.+.+.+.
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~-~~~~-~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF-GDRY-CALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHHHHHHH-SSSE-EECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc-CCEE-EEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 5899999999986544332 13456666777 6566 66665543 68889998888777554
No 186
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.22 E-value=8.1e-05 Score=49.50 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=39.4
Q ss_pred CCeEEEEEe-cCCCCCCCCCCH-------HHHHHHhhhcCC-----cceEEEcccCCCCCHHHHHHHHHHHHHHhh
Q psy5780 11 AHDSRVWSN-KCDLESEREVDF-------NEAEEMGEYVPE-----IHYVMETSAKDSTNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 11 ~ip~ilv~n-K~Dl~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 73 (106)
..|.++|+| |+|+... .+.. ..+..+.... + ... +++||+++.|++++|..+.+.+....
T Consensus 138 ~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 138 MGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC-GGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp GGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT-TTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh-CCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCC
Confidence 356666666 9999743 2111 1123344444 2 223 57899999999999999999887654
No 187
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.22 E-value=0.00018 Score=57.66 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=39.5
Q ss_pred CCCe-EEEEEecCCCCCCCCC---CHHHHHHHhhhcC----CcceEEEcccCCC--------CCHHHHHHHHHHHHH
Q psy5780 10 SAHD-SRVWSNKCDLESEREV---DFNEAEEMGEYVP----EIHYVMETSAKDS--------TNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~----~~~~~~~~Sa~~~--------~~v~~lf~~l~~~i~ 70 (106)
.++| +|+|+||+|+.+.... ...+...+...++ ..++ +++||++| .|++++|+.|.+.++
T Consensus 410 lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~-IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 410 VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPI-VRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCE-EECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeE-EEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 3688 7899999999742211 1123445555541 2589 99999999 457788877766543
No 188
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=3.3e-05 Score=53.46 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=36.4
Q ss_pred CCCCeEEEEEecCCCCCCCCC--CHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHH
Q psy5780 9 DSAHDSRVWSNKCDLESEREV--DFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 63 (106)
..++|.++|.||+||.++... .......+++.. ++++ +.+||.++.|+++++.
T Consensus 115 ~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g~~v-~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 115 ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-GYDV-YLTSSKDQDSLADIIP 169 (307)
T ss_dssp TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-TCCE-EECCHHHHTTCTTTGG
T ss_pred HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-CCeE-EEEecCCCCCHHHHHh
Confidence 367899999999999754210 012234444455 6788 9999999888776654
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.22 E-value=1.4e-05 Score=55.90 Aligned_cols=61 Identities=20% Similarity=0.048 Sum_probs=40.1
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCHHHHHH--HhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 8 PDSAHDSRVWSNKCDLESEREVDFNEAEE--MGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
...+.|+++|+||+|+.+........... +....+...+ +.+||+++.|++++|..+.+.-
T Consensus 194 ~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v-~~~SA~~~~~i~~l~~~l~~e~ 256 (353)
T 2x2e_A 194 DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV-VNRSQKDIDGKKDITAALAAER 256 (353)
T ss_dssp CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC-CCCCHHHHHTTCCHHHHHHHHH
T ss_pred CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE-EeCCcccccccccHHHHHHHHH
Confidence 44678999999999997543322221110 0011212357 8999999999999999987643
No 190
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.18 E-value=5.9e-05 Score=54.21 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=34.6
Q ss_pred CC-eEEEEEecCCCCCCC--C----CCHHHHHHHhhhcC----CcceEEEcccCCCCCHHHHHH
Q psy5780 11 AH-DSRVWSNKCDLESER--E----VDFNEAEEMGEYVP----EIHYVMETSAKDSTNVEEAFY 63 (106)
Q Consensus 11 ~i-p~ilv~nK~Dl~~~~--~----~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~lf~ 63 (106)
++ |+++|+||+|+.+.. . ...++...+...++ ..++ +++||++|.|+.+++.
T Consensus 143 ~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 143 GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRF-VPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEE-EECBTTTTBTTTBCCS
T ss_pred CCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceE-EEeecccCcccccccc
Confidence 44 588999999997521 1 11233455555551 1579 9999999999986553
No 191
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.13 E-value=0.00053 Score=47.97 Aligned_cols=58 Identities=12% Similarity=-0.017 Sum_probs=37.9
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHh---h-------hcCCcceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMG---E-------YVPEIHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
..|.++|+||+|+.+.... ......+. . .+ ..++ +.+||+++.|+++++..|.+.+..
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~-~~~v-i~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVW-KPKV-IRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSCSEEEECCCSGGGHHHH-HHHHHHHHHHHTTCC-----C-CCEE-EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhH-HHHHHHHHHHHHhcCccccCC-CceE-EEEecCCCCCHHHHHHHHHHHHHH
Confidence 4578999999998531110 00111121 1 12 3468 999999999999999999877643
No 192
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.10 E-value=0.00038 Score=46.91 Aligned_cols=52 Identities=13% Similarity=-0.001 Sum_probs=35.4
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLAN 67 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 67 (106)
+.|.++|.||+||.+... .+....+.+.. +.++ .+||+++.|+++++..+.+
T Consensus 46 ~k~~iivlNK~DL~~~~~--~~~~~~~~~~~-g~~v--~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKT--TKKWVEFFKKQ-GKRV--ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TSEEEEEEECGGGSCHHH--HHHHHHHHHHT-TCCE--EECCTTSCHHHHHHHHCCC
T ss_pred CCCcEEEEECccCCCHHH--HHHHHHHHHHc-CCeE--EEECCCCcCHHHHHHHHHH
Confidence 689999999999975311 12223344444 4443 6899999999998876643
No 193
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.06 E-value=0.00016 Score=53.95 Aligned_cols=48 Identities=29% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCCe-EEEEEecCCCCCCCCCC----HHHHHHHh-hhcCC-----cceEEEcccCCCCCHH
Q psy5780 10 SAHD-SRVWSNKCDLESEREVD----FNEAEEMG-EYVPE-----IHYVMETSAKDSTNVE 59 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~~~----~~~~~~~~-~~~~~-----~~~~~~~Sa~~~~~v~ 59 (106)
.++| +|+|+||+|+.+..... ......+. ... + +++ +.+||++|.||.
T Consensus 313 lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~-g~~~~~~~i-i~iSA~~G~gI~ 371 (592)
T 3mca_A 313 LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMV-GFKTSNVHF-VPISAISGTNLI 371 (592)
T ss_dssp SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTS-CCCGGGEEE-EEECSSSCSSSC
T ss_pred cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhh-CCCccceEE-EEEecccCcccc
Confidence 3566 89999999986522111 12233344 333 3 368 999999999997
No 194
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.97 E-value=0.0002 Score=51.80 Aligned_cols=51 Identities=22% Similarity=0.086 Sum_probs=33.2
Q ss_pred CCCe-EEEEEecCCCCCCCC----CCHHHHHHHhhhcC----CcceEEEcccCCCCCHHHH
Q psy5780 10 SAHD-SRVWSNKCDLESERE----VDFNEAEEMGEYVP----EIHYVMETSAKDSTNVEEA 61 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~l 61 (106)
.++| +|+|+||+|+.+... ....+...+...++ ..++ +++||++|.|+.++
T Consensus 143 ~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~-i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 143 LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF-VPISGWNGDNMIEA 202 (458)
T ss_dssp TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCE-EECCTTTCBTTTBC
T ss_pred cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceE-EEeecccCcCcccc
Confidence 4566 899999999973211 01123344444441 1579 99999999999754
No 195
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.96 E-value=0.00015 Score=52.59 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=33.4
Q ss_pred CCCe-EEEEEecCCCCCCCC------CCHHHHHHHhhhc-C-----CcceEEEcccCCCCCHHHHH
Q psy5780 10 SAHD-SRVWSNKCDLESERE------VDFNEAEEMGEYV-P-----EIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 10 ~~ip-~ilv~nK~Dl~~~~~------~~~~~~~~~~~~~-~-----~~~~~~~~Sa~~~~~v~~lf 62 (106)
.++| +|+|+||+|+..... ....+...+.... + ..++ +++||++|.|+.++|
T Consensus 179 ~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~-i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 179 QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKY-MPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEE-EECBTTTTBTTSSCC
T ss_pred cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceE-Eeccccccccccccc
Confidence 4677 899999999964211 0011233333322 1 3568 999999999998765
No 196
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.92 E-value=0.001 Score=50.49 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=41.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHH----------HHH-----HHhhhc-------CCcceEEEcccC-------------
Q psy5780 9 DSAHDSRVWSNKCDLESEREVDFN----------EAE-----EMGEYV-------PEIHYVMETSAK------------- 53 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~~~~~----------~~~-----~~~~~~-------~~~~~~~~~Sa~------------- 53 (106)
..+.|+++|+||+|+.....+..+ ... .+.... ....+ +.+||+
T Consensus 228 ~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v-~~vSAk~al~~~~~~~~~~ 306 (695)
T 2j69_A 228 GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERV-FELSSIQALRRRLKNPQAD 306 (695)
T ss_dssp TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTE-EECCHHHHHHHHHHCTTCC
T ss_pred hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcE-EEEeChHHHHhhccCchhh
Confidence 347789999999998643211110 011 111111 02468 999999
Q ss_pred -CCCCHHHHHHHHHHHHHHh
Q psy5780 54 -DSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 54 -~~~~v~~lf~~l~~~i~~~ 72 (106)
++.|+++++..+.+.+...
T Consensus 307 ~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 307 LDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CTTSSHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877543
No 197
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.00032 Score=52.57 Aligned_cols=50 Identities=12% Similarity=-0.032 Sum_probs=32.5
Q ss_pred CC-eEEEEEecCCCCCCCCCC----HHHHHHHhhhcC----CcceEEEcccCCCCCHHHH
Q psy5780 11 AH-DSRVWSNKCDLESEREVD----FNEAEEMGEYVP----EIHYVMETSAKDSTNVEEA 61 (106)
Q Consensus 11 ~i-p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~l 61 (106)
++ |+|+|+||+|+.+..... ......+....+ ..++ +++||++|.||+++
T Consensus 304 gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~-i~vSA~tG~gI~el 362 (611)
T 3izq_1 304 GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINW-VPISGFSGEGVYKI 362 (611)
T ss_dssp TCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEE-EECCTTTCTTTSSC
T ss_pred CCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccE-EeeecccCCCcccc
Confidence 44 489999999997532211 122233333331 2578 99999999999876
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.76 E-value=0.0022 Score=44.67 Aligned_cols=57 Identities=11% Similarity=0.016 Sum_probs=36.7
Q ss_pred CeEEEEEecCCCCCCCCCCHHHHHHHhh----------hcCCcceEEEcccCCCCCHHHHHHHHHHHHH
Q psy5780 12 HDSRVWSNKCDLESEREVDFNEAEEMGE----------YVPEIHYVMETSAKDSTNVEEAFYCLANELK 70 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 70 (106)
++.++|.||+|+.............+.. .+ ..++ +.+||+++.|+++++..|.+...
T Consensus 194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~-~~~v-l~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATW-TPPV-VTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTB-CCCE-EEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCC-CCCE-EEEeCCCCCCHHHHHHHHHHHHH
Confidence 4668888999975322111111222211 12 3467 88999999999999999887654
No 199
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.73 E-value=0.0012 Score=43.88 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=40.3
Q ss_pred CCeEEEEEecCCCCCCCCC------CHHHHHHHhhhcCCcceEEEcccCC-----CCCHHHHHHHHHHHHHHhh
Q psy5780 11 AHDSRVWSNKCDLESEREV------DFNEAEEMGEYVPEIHYVMETSAKD-----STNVEEAFYCLANELKNRQ 73 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~Sa~~-----~~~v~~lf~~l~~~i~~~~ 73 (106)
+.|+|||+||.|+.+.... .......+.+.. +..+ ...++.. +.+|++|+..+.+.+.+..
T Consensus 139 ~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~-g~~~-~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC-GGRV-CAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp GGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT-TTCE-EECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc-CCeE-EEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999653210 012345566666 5555 4444433 5789999999988887653
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.49 E-value=0.00028 Score=54.26 Aligned_cols=61 Identities=20% Similarity=0.030 Sum_probs=40.5
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCHHHHHH-Hh-hhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 7 WPDSAHDSRVWSNKCDLESEREVDFNEAEE-MG-EYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 7 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~-~~-~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
+...+.|+|+|.||+|+.+........... .. ...+...+ +.+||++|.|+++++..+.+.
T Consensus 213 L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~V-V~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 213 VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV-VNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEEC-CCCCCEESSSSEEHHHHHHHH
T ss_pred HHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCce-EEecccccccchhHHHHHHHH
Confidence 344578999999999997654433221110 00 01212467 889999999999999988764
No 201
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.15 E-value=0.009 Score=45.38 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=24.1
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++ |..||+++.|++.+++.+++.++.-
T Consensus 256 ~Pv-~~gSA~~~~Gv~~LLd~i~~~lPsP 283 (691)
T 1dar_A 256 TPV-FLGSALKNKGVQLLLDAVVDYLPSP 283 (691)
T ss_dssp EEE-EECBGGGTBSHHHHHHHHHHHSCCT
T ss_pred eEE-EEeecccCcCHHHHHHHHHHhCCCh
Confidence 468 9999999999999999999887643
No 202
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.70 E-value=0.024 Score=41.85 Aligned_cols=27 Identities=11% Similarity=-0.045 Sum_probs=23.4
Q ss_pred ceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 45 HYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 45 ~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
++ |..||.++.||+.+++.+.+.++.-
T Consensus 253 Pv-~~gSA~~~~Gv~~LLd~i~~~~P~P 279 (529)
T 2h5e_A 253 PV-FFGTALGNFGVDHMLDGLVEWAPAP 279 (529)
T ss_dssp EE-EECBTTTTBSHHHHHHHHHHHSCSS
T ss_pred EE-EeeecccCCCHHHHHHHHHHhCCCC
Confidence 67 8899999999999999998887643
No 203
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.28 E-value=0.036 Score=42.21 Aligned_cols=28 Identities=18% Similarity=0.091 Sum_probs=24.1
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++ |..||+++.||+.+++.+++.++.-
T Consensus 262 ~Pv-~~gSa~~~~Gv~~LLd~i~~~lPsP 289 (704)
T 2rdo_7 262 ILV-TCGSAFKNKGVQAMLDAVIDYLPSP 289 (704)
T ss_pred eEE-EEeecccCccHHHHHHHHHHHCCCh
Confidence 467 8999999999999999999888643
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=94.92 E-value=0.042 Score=40.72 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=23.3
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++ |..||+++.||..|++.+++.++.
T Consensus 269 ~PV-~~gSA~~~~Gv~~LLd~iv~~~Ps 295 (548)
T 3vqt_A 269 TPV-FFGSAINNFGVREMLDMFVEFAPG 295 (548)
T ss_dssp EEE-EECBGGGTBSHHHHHHHHHHHSCC
T ss_pred cee-eecccccCcCHHHHHHHHHHhCCC
Confidence 357 888999999999999999888764
No 205
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=94.84 E-value=0.053 Score=41.23 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=24.2
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHHh
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKNR 72 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 72 (106)
.++ |..||.++.|++.+++.+.+.++.-
T Consensus 254 ~Pv-~~gSA~~~~Gv~~LLd~i~~~lPsP 281 (693)
T 2xex_A 254 YPV-LCGTAFKNKGVQLMLDAVIDYLPSP 281 (693)
T ss_dssp EEE-EECBTTTTBSHHHHHHHHHHHSCCG
T ss_pred eeE-EEeecccCcCHHHHHHHHHHHCCCc
Confidence 357 8999999999999999999888644
No 206
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.53 E-value=0.0035 Score=44.65 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=31.3
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHH
Q psy5780 11 AHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62 (106)
Q Consensus 11 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 62 (106)
.+|+++|+||+|+.. .............. +..+ +.+||+.+.++.+++
T Consensus 214 ~kP~i~v~NK~D~~~--~~~l~~l~~~~~~~-~~~v-v~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAAS--DEQIKRLVREEEKR-GYIV-IPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSC--HHHHHHHHHHHHHT-TCEE-EEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccc--hHHHHHHHHHHhhc-CCcE-EEEeccchhhHHHHH
Confidence 489999999999862 11111222222333 5678 999999998887653
No 207
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.035 Score=34.51 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.3
Q ss_pred CCCCeEEEEEecCCCCCCCC
Q psy5780 9 DSAHDSRVWSNKCDLESERE 28 (106)
Q Consensus 9 ~~~ip~ilv~nK~Dl~~~~~ 28 (106)
..++|+++|+||+|+.+...
T Consensus 154 ~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 154 ENGIDILIACNKSELFTARP 173 (193)
T ss_dssp TTCCCEEEEEECTTSTTCCC
T ss_pred ccCCCEEEEEEchHhcCCCC
Confidence 35899999999999976543
No 208
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=93.66 E-value=0.05 Score=40.96 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=22.4
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.++ +..||+++.||+.+++.+.+.++.
T Consensus 213 ~Pv-~~gSa~~~~Gv~~LLd~i~~~~p~ 239 (638)
T 3j25_A 213 FPL-YHGSAKSNIGIDNLIEVITNKFYS 239 (638)
T ss_dssp CCC-CCCCSTTCCSHHHHHHHHHHSCCC
T ss_pred ccc-cccccccCCCchhHhhhhhccccC
Confidence 467 888999999999999988876653
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.93 E-value=0.025 Score=39.97 Aligned_cols=53 Identities=9% Similarity=-0.094 Sum_probs=36.5
Q ss_pred CCeEEEEEecCCC--CCC-CCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHH
Q psy5780 11 AHDSRVWSNKCDL--ESE-REVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCL 65 (106)
Q Consensus 11 ~ip~ilv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 65 (106)
..|+++|+||.|. .+. .....+....+++.. +..+ +.+||+...++.+++..-
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~-g~~v-v~iSAk~E~el~eL~~~~ 256 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE-GAEV-VVVSARLEAELAELSGEE 256 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH-TCEE-EEECHHHHHHHHTSCHHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHc-CCeE-EEeechhHHHHHHhchHH
Confidence 4799999999984 221 122344556677777 7889 999999877776665443
No 210
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=88.64 E-value=0.58 Score=32.96 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=29.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCC
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKD 54 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 54 (106)
...|+++|+|+.|..-...........++... +..+ +.+||+.
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~-~~~~-i~~sA~~ 240 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKE-GAVV-VPVCAAI 240 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHT-TCEE-EEECHHH
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHc-CCCE-EEechHH
Confidence 35899999999986421122234456667667 7788 9999764
No 211
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=87.66 E-value=1.1 Score=34.06 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=22.5
Q ss_pred cceEEEcccCCCCCHHHHHHHHHHHHHH
Q psy5780 44 IHYVMETSAKDSTNVEEAFYCLANELKN 71 (106)
Q Consensus 44 ~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 71 (106)
.+. +..||..+.|+..+++.+++.++.
T Consensus 265 ~pv-~~gsa~~~~gv~~lLd~i~~~lPs 291 (709)
T 4fn5_A 265 VPA-VCGSSFKNKGVPLVLDAVIDYLPA 291 (709)
T ss_dssp EEE-EECBTTTTBTHHHHHHHHHHHSCC
T ss_pred eee-eeeecccCCchHHHHHHHHhhCCC
Confidence 356 788999999999999988887764
No 212
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=87.19 E-value=0.45 Score=31.50 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=13.5
Q ss_pred CeEEEEEecCCCCCCC
Q psy5780 12 HDSRVWSNKCDLESER 27 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~ 27 (106)
+|+++|+||+|+.+..
T Consensus 155 ~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 155 NKAIVALTHAQFSPPD 170 (270)
T ss_dssp GGEEEEEECCSCCCGG
T ss_pred cCEEEEEECcccCCcC
Confidence 6999999999997544
No 213
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=86.63 E-value=2.1 Score=30.21 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=36.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 69 (106)
...|.+++.||+|.. ..++...+.+. ..+ +.+|+..+.|++.+...+.+.+
T Consensus 248 ~~~p~i~v~nKid~~-----~~eele~l~~~---~~~-~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSL-----SIEELELLYRI---PNA-VPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EEECEEEEEECGGGS-----CHHHHHHHTTS---TTE-EECCTTTCTTHHHHHHHHHHHH
T ss_pred hccceEEEEeccccc-----CHHHHHHHhcc---cch-hhhhhhhcccchhHHHHHHHHc
Confidence 346899999999964 23443333332 356 8899999999999887776655
No 214
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=85.56 E-value=0.87 Score=30.00 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=13.7
Q ss_pred CeEEEEEecCCCCCCCCC
Q psy5780 12 HDSRVWSNKCDLESEREV 29 (106)
Q Consensus 12 ip~ilv~nK~Dl~~~~~~ 29 (106)
.|+++|+||+|+.+.+..
T Consensus 152 ~~~ivv~nK~Dl~~~~~~ 169 (262)
T 3def_A 152 CKTLLVLTHAQFSPPDEL 169 (262)
T ss_dssp GGEEEEEECTTCCCSTTC
T ss_pred cCEEEEEeCcccCCCCCc
Confidence 389999999999644333
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=76.68 E-value=4.1 Score=29.13 Aligned_cols=63 Identities=11% Similarity=-0.052 Sum_probs=39.0
Q ss_pred CCCeEEEEEecCCCC-------CCCCCCHHH----HHHHh----hhc--CCcceEEEccc--CCCCCHHHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLE-------SEREVDFNE----AEEMG----EYV--PEIHYVMETSA--KDSTNVEEAFYCLANELK 70 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~-------~~~~~~~~~----~~~~~----~~~--~~~~~~~~~Sa--~~~~~v~~lf~~l~~~i~ 70 (106)
.+.|+++|.||.|+. .-....... ...+. ... +...+ +.+|+ ..+.|++++.+.+.+.++
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~i-iliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPI-FLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCE-EECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE-EEEecCcCCccCHHHHHHHHHHhCc
Confidence 468999999999963 111112222 22222 111 12356 77888 677789999999988876
Q ss_pred Hhh
Q psy5780 71 NRQ 73 (106)
Q Consensus 71 ~~~ 73 (106)
+..
T Consensus 253 eg~ 255 (413)
T 1tq4_A 253 IYK 255 (413)
T ss_dssp GGG
T ss_pred cch
Confidence 654
No 216
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=67.88 E-value=1.1 Score=33.08 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.0
Q ss_pred CCCCCeEEEEEecCCCCCC
Q psy5780 8 PDSAHDSRVWSNKCDLESE 26 (106)
Q Consensus 8 ~~~~ip~ilv~nK~Dl~~~ 26 (106)
...+.|+++|+||+|+.+.
T Consensus 215 ~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 215 RGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp TTCGGGEEEEEECGGGSCH
T ss_pred HhcCCCEEEEEECCCccCH
Confidence 3456899999999998753
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=66.38 E-value=0.33 Score=34.03 Aligned_cols=45 Identities=7% Similarity=-0.086 Sum_probs=27.0
Q ss_pred EeecCCCCCeEEEEEecCCCCCCCCCCHHHHHH-HhhhcCCcceEEEccc
Q psy5780 4 FVGWPDSAHDSRVWSNKCDLESEREVDFNEAEE-MGEYVPEIHYVMETSA 52 (106)
Q Consensus 4 ~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa 52 (106)
++.+...++|+++|.||.|...... .+.+.. +.+.. +..+ ...++
T Consensus 266 ~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~-g~~l-~p~~~ 311 (368)
T 3h2y_A 266 FDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHA-GDLL-SPPTP 311 (368)
T ss_dssp EEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHB-TTTB-CSSCH
T ss_pred EEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHh-CCcc-CCCch
Confidence 4445667899999999999764332 333333 34444 5444 44443
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=65.13 E-value=12 Score=26.48 Aligned_cols=43 Identities=9% Similarity=-0.039 Sum_probs=28.0
Q ss_pred CCeEEEEEecCCC--CCCCCCCHHHHHHHhhhc-CCcceEEEcccCC
Q psy5780 11 AHDSRVWSNKCDL--ESEREVDFNEAEEMGEYV-PEIHYVMETSAKD 54 (106)
Q Consensus 11 ~ip~ilv~nK~Dl--~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 54 (106)
..|++.+.|+.|. ......-......++... ++..+ +.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~-v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTL-IPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCE-EEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeE-EEEEhHH
Confidence 5799999999983 211122245566666655 23678 9999876
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=61.31 E-value=2.8 Score=29.27 Aligned_cols=51 Identities=2% Similarity=-0.102 Sum_probs=29.9
Q ss_pred EeecCCCCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCC
Q psy5780 4 FVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTN 57 (106)
Q Consensus 4 ~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 57 (106)
++.+...++|++++.||.|........ .....+.+.. +..+ ...++....+
T Consensus 267 l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~-g~~l-~p~~~~~~~~ 317 (369)
T 3ec1_A 267 LDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQL-GELL-SPPSKRYAAE 317 (369)
T ss_dssp EEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHB-TTTB-CSSCGGGTTT
T ss_pred EEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhc-CCcc-CCCCchhhhh
Confidence 444556789999999999976433222 2233344455 5555 5555554433
No 220
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=52.22 E-value=4 Score=31.79 Aligned_cols=15 Identities=27% Similarity=0.109 Sum_probs=13.5
Q ss_pred CCCeEEEEEecCCCC
Q psy5780 10 SAHDSRVWSNKCDLE 24 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~ 24 (106)
.++|+++|+||+|+.
T Consensus 149 ~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 149 ERIKPVVVINKVDRA 163 (842)
T ss_dssp TTCEEEEEEECHHHH
T ss_pred cCCCeEEEEECCCcc
Confidence 578999999999985
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=43.89 E-value=3 Score=30.66 Aligned_cols=21 Identities=10% Similarity=-0.176 Sum_probs=16.9
Q ss_pred EEcccCCCCC-HHHHHHHHHHH
Q psy5780 48 METSAKDSTN-VEEAFYCLANE 68 (106)
Q Consensus 48 ~~~Sa~~~~~-v~~lf~~l~~~ 68 (106)
+.+|+..|.| ++++++.+.+.
T Consensus 289 ~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 289 PFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHHCCCTTTTTTTTHHHHTTT
T ss_pred eeeehhcCCCcHHHHHHHHHHH
Confidence 4579999999 98888888654
No 222
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=31.26 E-value=32 Score=23.64 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=35.3
Q ss_pred CCCeEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHHHHHHHHHHH
Q psy5780 10 SAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE 68 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 68 (106)
.++|.|+ .+|-|.. .+.....++.. ++++ +.++..+...+..+..++...
T Consensus 79 ~~~P~II-ltrg~~~------peelie~A~~~-~IPV-L~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 79 PETPAII-VTRDLEP------PEELIEAAKEH-ETPL-ITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp TTCCCEE-ECTTCCC------CHHHHHHHHHT-TCCE-EECCSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCCC------CHHHHHHHHHC-CCeE-EEECCchhHHHHHHHHHHHHh
Confidence 4667654 5777754 24567778888 9999 999988887777776665544
No 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=27.20 E-value=56 Score=23.45 Aligned_cols=16 Identities=25% Similarity=-0.022 Sum_probs=13.9
Q ss_pred CCCeEEEEEecCCCCC
Q psy5780 10 SAHDSRVWSNKCDLES 25 (106)
Q Consensus 10 ~~ip~ilv~nK~Dl~~ 25 (106)
.++|+|+|.||+|...
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 6789999999999754
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.40 E-value=61 Score=23.35 Aligned_cols=39 Identities=8% Similarity=-0.097 Sum_probs=21.7
Q ss_pred eEEEEEecCCCCCCCCCCHHHHHHHhhhcCCcceEEEcccCCCCCHH
Q psy5780 13 DSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVE 59 (106)
Q Consensus 13 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 59 (106)
+..+|.||.|.... ...+....... +.++ ..++. |++++
T Consensus 241 i~gVIlTKlD~~~~----gG~~ls~~~~~-g~PI-~fig~--Ge~vd 279 (443)
T 3dm5_A 241 IGSIIVTKLDGSAK----GGGALSAVAAT-GAPI-KFIGT--GEKID 279 (443)
T ss_dssp TEEEEEECCSSCSS----HHHHHHHHHTT-CCCE-EEEEC--SSSTT
T ss_pred CeEEEEECCCCccc----ccHHHHHHHHH-CCCE-EEEEc--CCChH
Confidence 34588999997432 22334444455 6666 55543 55543
No 225
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=21.50 E-value=74 Score=19.48 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=16.3
Q ss_pred EEeecCCCCCeEEEEEecCC
Q psy5780 3 IFVGWPDSAHDSRVWSNKCD 22 (106)
Q Consensus 3 ~~~~~~~~~ip~ilv~nK~D 22 (106)
+++.+....+|.++|.+|.+
T Consensus 105 lIEg~k~~~~pki~v~~~~~ 124 (174)
T 1np6_A 105 LVEGFKHEEIAKIVLFRDGA 124 (174)
T ss_dssp EEESCSSCCSEEEEEECTTS
T ss_pred HHHHHhhcCCCEEEEEeccc
Confidence 55666778899999999986
Done!