RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5780
(106 letters)
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 81.6 bits (202), Expect = 8e-21
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NKCDL+ +R V+++ A+E + ++ + +ETSA DSTNVE+AF +A ++K S
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADA-NKMPF-LETSALDSTNVEDAFLTMARQIKESMSQQNL 178
Query: 79 NEPINTDNTNSPITLSNDTKSIRNKCNC 106
NE + L + + C C
Sbjct: 179 NETTQKKEDKGNVNLKGQSLTNTGGCCC 206
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 76.1 bits (188), Expect = 7e-19
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK D E++RE+ + E+ + + + + E SAKD+ NV+E F L +++ +
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRF-CEASAKDNFNVDEIFLKLVDDILKK 191
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 75.4 bits (186), Expect = 1e-18
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DL REV EA+ + E+ +I +ETSAKDS+NVEEAF +A EL R L
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHY-DILCAIETSAKDSSNVEEAFLRVATELIMRHGGPL 199
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 74.7 bits (184), Expect = 3e-18
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK DL +R+V E E + + + +ETSAK NV++ F +A L +S
Sbjct: 129 NKTDLADKRQVSIEEGERKAKELNVMF--IETSAKAGYNVKQLFRRVAAALPGMES---- 182
Query: 79 NEPINTDNTNSPITLSNDTKSIRNKCNC 106
+ I L + ++ C
Sbjct: 183 -TQDRSREDMIDIKLEKPQEQPVSEGGC 209
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 73.5 bits (181), Expect = 1e-17
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NKCD+E ER V ++ +++ + E SAKD+ NV++ F L + + + S +L
Sbjct: 121 NKCDMEDERVVSSERGRQLADHL-GFEF-FEASAKDNINVKQTFERLVDVICEKMSESLD 178
Query: 79 NEPINTDNTNSPITLSN 95
L++
Sbjct: 179 TADPAVTGAKQGPQLTD 195
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 72.5 bits (179), Expect = 1e-17
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NKCD REV +EAE + + + METSAK + NV+E F L N K R +
Sbjct: 117 NKCDESPSREVQSSEAEALARTW-KCAF-METSAKLNHNVKELFQELLNLEKRRTVS 171
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 72.1 bits (178), Expect = 1e-17
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70
NKCDLE ER V + + + + +E+SAK NV E FY L ++
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAF-LESSAKSKINVNEIFYDLVRQIN 166
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 73.0 bits (180), Expect = 1e-17
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK DLE +R+V EA+ E ++Y +ETSAK NV++ F+ L E++ R+
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQW-NVNY-VETSAKTRANVDKVFFDLMREIRARKME--- 181
Query: 79 NEPINTDNTNSPITLSNDTKSIRNKC 104
++ N + K IR +C
Sbjct: 182 ----DSKEKNGKKKRKSLAKRIRERC 203
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 72.7 bits (179), Expect = 2e-17
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK DL R V +EA E + + +ETSA DSTNVEEAF + E+ S
Sbjct: 118 NKSDLRHLRAVPTDEARAFAEKN-NLSF-IETSALDSTNVEEAFKNILTEIYRIVSQKQI 175
Query: 79 NEPINTDNTNSPITLSNDTKSIRN 102
+ D + + +
Sbjct: 176 ADRAAHDESPGNNVVDISVPPTTD 199
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 71.8 bits (177), Expect = 2e-17
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK DL REV E + + + +ETSA N E F +++ R+
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTL-SCKH-IETSAALHHNTRELFEGAVRQIRLRR 169
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 71.8 bits (177), Expect = 2e-17
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK DL REV +E + + +ETSA NV+ F + +++ R+
Sbjct: 114 NKSDLVRSREVSVDEGRACAVVF-DCKF-IETSAALHHNVQALFEGVVRQIRLRR 166
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 71.8 bits (177), Expect = 3e-17
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NKCD+ +R+V E++ I + METSAK + NVE AF+ LA ++K +
Sbjct: 121 NKCDVNDKRQVSKERGEKLAL-DYGIKF-METSAKANINVENAFFTLARDIKAKMDKNWK 178
Query: 79 NEP 81
Sbjct: 179 ATA 181
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 71.4 bits (176), Expect = 3e-17
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK D ER V + E++ + + + METSAK NV+ AF +A ELK R
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEY-GLPF-METSAKTGLNVDLAFTAIAKELKRRSM 177
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 71.4 bits (176), Expect = 3e-17
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DLE +R+V EA+ + ++Y +ETSAK NV++ F+ L E++ R
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQW-NVNY-VETSAKTRANVDKVFFDLMREIRAR 168
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 71.5 bits (176), Expect = 4e-17
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DLE +R V EA E+ E I Y ETSA + TN+ A L + + R ++
Sbjct: 135 NKSDLEDQRAVKEEEARELAEKY-GIPY-FETSAANGTNISHAIEMLLDLIMKRMERSV 191
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 71.4 bits (176), Expect = 4e-17
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK DLE +R+V EA+ E ++Y +ETSAK NV++ F+ L E++ R+
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQW-NVNY-VETSAKTRANVDKVFFDLMREIRARK 183
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 70.6 bits (174), Expect = 6e-17
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DL + + EAE + + + ++ + TS K+ NV E F LA + +
Sbjct: 117 NKIDLLDDSCIKNEEAEGLAKRL-KLRF-YRTSVKEDLNVSEVFKYLAEKHLQK 168
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 71.6 bits (176), Expect = 7e-17
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK DL +REV+ +A E+ + I Y ETSA NVE+A L + + R +
Sbjct: 149 NKADLPDQREVNERQARELADKY-GIPY-FETSAATGQNVEKAVETLLDLIMKRMEQCVE 206
Query: 79 NEPINTDNTN 88
I
Sbjct: 207 KTQIPDTVNG 216
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 70.6 bits (174), Expect = 7e-17
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DLES+R+V +EA G + Y E SAK NV+EAF L ++ Q L
Sbjct: 122 NKADLESQRQVPRSEASAFGASH-HVAY-FEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 70.7 bits (174), Expect = 7e-17
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK D + V+ +A + + I ETSAK++ NVEE F C+ + + L
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQM-GIQL-FETSAKENVNVEEMFNCITELVLRAKKDNLA 178
Query: 79 NE 80
+
Sbjct: 179 KQ 180
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 70.7 bits (174), Expect = 8e-17
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL REV EA E + + +ETSA DSTNVE AF + E+ + S
Sbjct: 138 NKSDLSQAREVPTEEARMFAENN-GLLF-LETSALDSTNVELAFETVLKEIFAKVS 191
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 70.7 bits (174), Expect = 8e-17
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL+++REV F EA + E+ + +ETSA NVEEAF A ++ N+
Sbjct: 123 NKKDLDADREVTFLEASRFAQEN-ELMF-LETSALTGENVEEAFVQCARKILNKIE 176
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 70.3 bits (173), Expect = 9e-17
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK DL REV E + + +ETSA NV E F + +L+ R+
Sbjct: 119 NKADLARCREVSVEEGRACAVVF-DCKF-IETSATLQHNVAELFEGVVRQLRLRR 171
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 70.3 bits (173), Expect = 9e-17
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDLE ER V + + + + E SAK++ NV++ F L + + + +
Sbjct: 135 NKCDLEDERVVPAEDGRRLADD-LGFEF-FEASAKENINVKQVFERLVDVICEKMN 188
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 70.7 bits (174), Expect = 9e-17
Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NKCDL +++ VD+ A+E + + I + +ETSAK++TNVE++F +A E+K R
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSL-GIPF-LETSAKNATNVEQSFMTMAAEIKKRMG 182
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 70.2 bits (173), Expect = 9e-17
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSAT 76
NK DL ER + + E + + E + +E+SAK++ + F + E + A
Sbjct: 119 NKKDLHMERVISYEEGKALAESW-NAAF-LESSAKENQTAVDVFRRIILEAEKMDGAC 174
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 70.3 bits (173), Expect = 1e-16
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NKCDL REV +A+E E + I +ETSAK++ N+EE F ++ ++
Sbjct: 136 NKCDLSDIREVPLKDAKEYAESIGAIV--VETSAKNAINIEELFQGISRQIPPLDPH 190
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 70.3 bits (173), Expect = 1e-16
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSAT 76
NKCD+E ER V + + + E + + E SAK++ +V +AF L + + ++ S +
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQL-GFDF-FEASAKENISVRQAFERLVDAICDKMSDS 191
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 70.4 bits (173), Expect = 1e-16
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NKCDL +++ VD+ A+E + I + +ETSAK++TNVE++F +A E+K R
Sbjct: 146 NKCDLTTKKVVDYTTAKEFADS-LGIPF-LETSAKNATNVEQSFMTMAAEIKKR 197
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 70.4 bits (173), Expect = 1e-16
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL+ EREV F EA + E+ + +ETSA NVEEAF A + N+
Sbjct: 138 NKKDLDPEREVTFLEASRFAQEN-ELMF-LETSALTGENVEEAFLKCARTILNKID 191
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 69.9 bits (172), Expect = 1e-16
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIH-YVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NK DL R+V +A+ + E + METSAK +TNV+E FY +A L Q
Sbjct: 125 NKSDLLDARKVTAEDAQTYAQ---ENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 69.9 bits (172), Expect = 2e-16
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DLES R+V E E + + METSAK + NVEEAF A E+ +
Sbjct: 134 NKSDLESRRDVKREEGEAFAREH-GLIF-METSAKTACNVEEAFINTAKEIYRK 185
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 69.9 bits (172), Expect = 2e-16
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL REV E + + + +ETSA N E F +++ R+
Sbjct: 138 NKSDLARSREVSLEEGRHLAGTL-SCKH-IETSAALHHNTRELFEGAVRQIRLRRG 191
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 70.0 bits (172), Expect = 2e-16
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK DLE R+V A+ I Y ETSAK++ NVE+AF +A +++
Sbjct: 125 NKIDLE-NRQVATKRAQAWCYSKNNIPY-FETSAKEAINVEQAFQTIARNALKQETE--- 179
Query: 79 NEPINTDNTNSPITLSNDTKSIRNKCNC 106
E N + + K+ C+C
Sbjct: 180 VELYNEFPEPIKLDKNERAKASAESCSC 207
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 70.1 bits (172), Expect = 2e-16
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK D+E R V ++ E + + + I + +E+SAK+ NV E F+ LA ++ + +
Sbjct: 133 NKSDME-TRVVTADQGEALAKEL-GIPF-IESSAKNDDNVNEIFFTLAKLIQEKIDSNKL 189
Query: 79 NEPINTDNTNSPITLSNDTKSIRN 102
N N I + S N
Sbjct: 190 VGVGNGKEGNISINSGSGNSSKSN 213
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 69.6 bits (171), Expect = 3e-16
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL REV AEE E + Y +ETSAK+S NVE+ F LA L +
Sbjct: 139 NKIDLAERREVSQQRAEEFSE--AQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 68.7 bits (169), Expect = 3e-16
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70
NK DLE ER V EAE E V H TSAK + +EE F L +
Sbjct: 119 NKIDLEKERHVSIQEAESYAESVGAKH--YHTSAKQNKGIEELFLDLCKRMI 168
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 69.7 bits (171), Expect = 3e-16
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DL REV +E + + +ETSA NV+E F + +++ R+
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVF-DCKF-IETSAAVQHNVKELFEGIVRQVRLRRD 206
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 69.2 bits (170), Expect = 3e-16
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSAT 76
NK DL EREV E +++ E + ME+SA+++ + F + E+ +++
Sbjct: 137 NKADLSPEREVQAVEGKKLAESW-GATF-MESSARENQLTQGIFTKVIQEIARVENSY 192
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 68.8 bits (169), Expect = 4e-16
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 19 NKCDLE-SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NK D E S++ V A+E+ + + +I TSAK++ NV+ AF +A + A
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPL-FLTSAKNAINVDTAFEEIARSALQQNQA 182
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 69.3 bits (170), Expect = 5e-16
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK D+++ +++ E+ + Y E SAK + N F LA R
Sbjct: 125 NKIDIKNRQKISKKLVMEVLKGK-NYEY-FEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182
Query: 79 NEP 81
+
Sbjct: 183 SNV 185
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 67.9 bits (167), Expect = 7e-16
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70
NK DLESEREV +E + E + METSAK T V+E F + ++
Sbjct: 116 NKVDLESEREVSSSEGRALAEEW-GCPF-METSAKSKTMVDELFAEIVRQMN 165
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 68.0 bits (167), Expect = 8e-16
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL R V +EA E + + +ETSA DSTNVE AF + E+
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKN-GLSF-IETSALDSTNVEAAFQTILTEI 190
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 67.1 bits (165), Expect = 1e-15
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIH-YVMETSAKDSTNVEEAFYCLANELK 70
NKCDL REV +A++ + IH +ETSAK++ N+ E F ++ +
Sbjct: 119 NKCDLTDVREVMERDAKDYAD---SIHAIFVETSAKNAININELFIEISRRIP 168
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 67.5 bits (166), Expect = 1e-15
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
NK D+ ER+V EA+ + Y ETSAKD+TNV AF + +
Sbjct: 124 NKIDIS-ERQVSTEEAQAWCRDNGDYPY-FETSAKDATNVAAAFEEAVRRVLATE 176
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 67.2 bits (165), Expect = 1e-15
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIH-YVMETSAKDSTNVEEAFYCLANELK 70
NK DL ++R VDF EA+ + + METSAK S NV E F +A +L
Sbjct: 119 NKADLANKRAVDFQEAQSYAD---DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 67.7 bits (166), Expect = 1e-15
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NK DL REV +E +ETSA NV+E F + +++ R+ +
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKF--IETSAAVQHNVKELFEGIVRQVRLRRDS 176
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 67.2 bits (165), Expect = 2e-15
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70
NK DLE++R+V + EA++ E +E SAK NVE+AF A ++
Sbjct: 128 NKADLEAQRDVTYEEAKQFAE--ENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 66.0 bits (162), Expect = 4e-15
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK DLE R + + + SAK +V F +A E+ +
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQEN-GFSS-HFVSAKTGDSVFLCFQKVAAEILGIKL 176
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 66.0 bits (162), Expect = 4e-15
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDST-NVEEAFYCLANELKNR 72
NK DL R+V ++ +EM I Y +ETSAKD NV++ F+ L ++ +
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKY-NIPY-IETSAKDPPLNVDKTFHDLVRVIRQQ 183
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 66.6 bits (163), Expect = 4e-15
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK DL R V E++ + ++ + ETSA +S NV++AF L N + + S
Sbjct: 126 NKSDLAHLRAVPTEESKTFAQEN-QLLF-TETSALNSENVDKAFEELINTIYQKVSKHQM 183
Query: 79 NEPINTDNTNSPITLSNDTKSI-----------RNKCNC 106
+ ++ N N+ + + +I N NC
Sbjct: 184 DLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNC 222
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 66.1 bits (162), Expect = 5e-15
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 19 NKCDLESEREVDFNEAEEM-GEYVPEIHYVMETSAKDS-TNVEEAFYCLANELKNRQSA 75
NK DL+ R+V E E++ E + E SA N+ E FY L E++ R+
Sbjct: 140 NKADLDHSRQVSTEEGEKLATEL--ACAF-YECSACTGEGNITEIFYELCREVRRRRMV 195
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 64.9 bits (159), Expect = 1e-14
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
NK DL +R+V E E + + + + +ETSAK NV++ F +A L
Sbjct: 127 NKTDLSDKRQVSTEEGERKAKEL-NVMF-IETSAKAGYNVKQLFRRVAAAL 175
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 64.9 bits (159), Expect = 1e-14
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAK---DSTNVEEAFYCLANELKN 71
NKCDL S +V + A++ + + ETSAK D+ +VE F LA++LK+
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTH-SMPL-FETSAKNPNDNDHVEAIFMTLAHKLKS 188
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 64.9 bits (159), Expect = 1e-14
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 19 NKCDL--ESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ + + R +D + A ++ + Y ET A NVE F +A ++ +
Sbjct: 127 TQDAISAANPRVIDDSRARKLSTDLKRCTY-YETCATYGLNVERVFQDVAQKVVALR 182
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 64.5 bits (158), Expect = 2e-14
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NKCDL R VD +A+++ I + +ETSAK V++AFY L E++ +
Sbjct: 117 NKCDLP-SRTVDTKQAQDLARSY-GIPF-IETSAKTRQGVDDAFYTLVREIRKHK----- 168
Query: 79 NEPINTDNTNSPITLSNDTKSIRNKCNC 106
++ K ++K C
Sbjct: 169 ----------EKMSKDGKKKKKKSKTKC 186
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 64.1 bits (157), Expect = 2e-14
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK D+E R V ++ E + + + I + +E+SAK+ NV E F+ LA ++ +
Sbjct: 116 NKSDME-TRVVTADQGEALAKEL-GIPF-IESSAKNDDNVNEIFFTLAKLIQEK 166
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 64.2 bits (157), Expect = 2e-14
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NKCD +REVD EA+ + + + + METSAK + NV+E F L R
Sbjct: 122 NKCDET-QREVDTREAQAVAQEW-KCAF-METSAKMNYNVKELFQELLTLETRRN----- 173
Query: 79 NEPINTDNTNSPITLSNDTKSIRNKC 104
++ + T ++ KC
Sbjct: 174 ---MSLNIDGKRSGKQKRTDRVKGKC 196
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 63.8 bits (156), Expect = 2e-14
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
++ S R V A + + Y ET A NV+ F +A ++ +
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSY-YETXATYGLNVDRVFQEVAQKVVTLR 171
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 64.2 bits (157), Expect = 2e-14
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 19 NKCDL------ESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK D+ E ++ V + E++ + ETSAKD +N+ EA LA E+K R
Sbjct: 141 NKADIRDTAATEGQKCVPGHFGEKLAMTY-GALF-CETSAKDGSNIVEAVLHLAREVKKR 198
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 63.8 bits (156), Expect = 3e-14
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NKCDL R VD +A E+ + I + +ETSAK VE+AFY L E++ + L
Sbjct: 134 NKCDLP-TRTVDTKQAHELAKSY-GIPF-IETSAKTRQGVEDAFYTLVREIRQYRMKKL 189
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 63.4 bits (155), Expect = 4e-14
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK D E REVD NE + + + +E SAK V+ AF L ++
Sbjct: 129 NKIDKE-NREVDRNEGLKFARKH-SMLF-IEASAKTCDGVQCAFEELVEKIIQTPG 181
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 61.7 bits (151), Expect = 2e-13
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70
NK DL R V+ +A+++ I Y +ETSAK VE+AFY L E++
Sbjct: 116 NKSDLA-ARTVESRQAQDLARSY-GIPY-IETSAKTRQGVEDAFYTLVREIR 164
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 62.7 bits (152), Expect = 2e-13
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 19 NKCDLESEREVDFNEAEEMGEY-VPEIHYVMETSAKDSTNVEEAFYCLANELK 70
KCD ER + + + + V+ETSA+ + NV+ AF L +
Sbjct: 206 TKCDEGVERYIRDAHTFALSKKNLQ----VVETSARSNVNVDLAFSTLVQLID 254
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 62.1 bits (151), Expect = 2e-13
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK D + +VD E ++ + + + ++TSAK TN++ FY LA E+
Sbjct: 155 NKIDKN-KFQVDILEVQKYAQDN-NLLF-IQTSAKTGTNIKNIFYMLAEEIYKN 205
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 62.3 bits (152), Expect = 2e-13
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 19 NKCDLESEREVDFNE--AEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSAT 76
NK D++ + + + + Y + SAK + N E+ F LA +L +
Sbjct: 127 NKVDIKDRKVKAKSIVFHRKKN-----LQY-YDISAKSNYNFEKPFLWLARKLIGDPNLE 180
Query: 77 LCNEP 81
P
Sbjct: 181 FVAMP 185
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 59.9 bits (146), Expect = 9e-13
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 19 NKCDLESEREVDFNEAEEM-GEYVPEIHYVMETSAKDS-TNVEEAFYCLANELK 70
NK D+ R+V E + G + + E SA +V+ F+ E +
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRF--GCLF-FEVSACLDFEHVQHVFHEAVREAR 185
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 60.0 bits (146), Expect = 1e-12
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 19 NKCDLESER-EVDFNEAEEMGEYVPEIHYVMETSAK-DSTNVEEAFYCLANELKNRQS 74
NK DL +R +V + A++ + + + SA + + F +A
Sbjct: 140 NKTDLPPQRHQVRLDMAQDWATTN-TLDF-FDVSANPPGKDADAPFLSIATTFYRNYE 195
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 55.8 bits (134), Expect = 1e-10
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIH-YVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK D ++ + E P I S K+ VE L + + + S
Sbjct: 158 NKIDENPSYNIEQKKINE---RFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDS 211
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 50.8 bits (122), Expect = 2e-09
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 19 NKCDLESEREVDFNEAEEMGEY-----VPEIH-YVMETSAKDSTNVEEAFYCLANELKNR 72
D+ E++ ++ E P I Y + ++S + + + NE N
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179
Query: 73 Q 73
+
Sbjct: 180 K 180
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 48.3 bits (115), Expect = 2e-08
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 19 NKCD---LESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK D ER+V E E++ E + ETSAK NV + F + ++ +
Sbjct: 116 NKIDXLQEGGERKVAREEGEKLAEEKGLLF--FETSAKTGENVNDVFLGIGEKIPLK 170
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 39.2 bits (92), Expect = 5e-05
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 19 NKCDL--ESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
K DL + +V E +++ + + + Y +E S+ + E F
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAY-IEASSVAKIGLNEVF 179
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 38.9 bits (91), Expect = 7e-05
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 19 NKCDL--------ESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFY 63
K DL + + + EE+ + + Y +E S+K NV+ F
Sbjct: 121 TKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY-IECSSKTQQNVKAVFD 172
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 38.3 bits (90), Expect = 1e-04
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NK DL E ++ + E+ E ++ +++TSAK +EE L LK + S
Sbjct: 123 NKMDLYDEDDLR--KVRELEEIYSGLYPIVKTSAKTGMGIEE----LKEYLKGKIST 173
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 35.8 bits (83), Expect = 9e-04
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 19 NKCDLESERE----------VDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
K DL +++ + + EE+ + + Y +E S+K NV+ F
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY-IECSSKSQENVKGVF 172
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 35.2 bits (82), Expect = 0.001
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEIH----YVMETSAKDSTNVEEAFYCLANE 68
V NK DL E+E+ E+M + I S K+ N++ L
Sbjct: 129 VLGNKRDLPGALDEKEL----IEKMN--LSAIQDREICCYSISCKEKDNIDITLQWLIQH 182
Query: 69 LKNRQS 74
K+R+S
Sbjct: 183 SKSRRS 188
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHY-VMETSAKDSTNVEEAFYCLANELKNRQSA 75
K DL +++ + + E I Y V TS+KD ++ + + +++ +
Sbjct: 125 TKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTSSKDQDSLAD----IIPHFQDKTTV 177
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 34.7 bits (80), Expect = 0.002
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 19 NKCDLESERE------------VDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
+ DL + + V A+ + E + Y +E SA N++E F
Sbjct: 132 TQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY-IECSALTQKNLKEVF 186
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 34.4 bits (79), Expect = 0.003
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 19 NKCDLESERE------------VDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
K DL ++ V ++ +EM V + Y +E SA+ NV F
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY-LECSARLHDNVHAVF 200
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 33.4 bits (77), Expect = 0.006
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEI----HYVMETSAKDSTNVEEAFYCLANE 68
+++NK DL SE E+ AE++G V I ++++S+K + E L
Sbjct: 128 IFANKQDLPDAASEAEI----AEQLG--VSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181
Query: 69 LKNRQSA 75
L+ +
Sbjct: 182 LREQGLG 188
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 33.0 bits (76), Expect = 0.007
Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEI----HYVMETSAKDSTNVEEAFYCLANE 68
++NK DL + +V ++ + + I ++ + A ++E L ++
Sbjct: 131 FFANKMDLRDAVTSVKV----SQLLC--LENIKDKPWHICASDAIKGEGLQEGVDWLQDQ 184
Query: 69 LKNRQS 74
++ ++
Sbjct: 185 IQTVKT 190
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 33.2 bits (76), Expect = 0.008
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 19 NKCDL------------ESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
NK DL + V ++ M + Y +E SAK V E F
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY-LECSAKTKEGVREVF 191
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 32.8 bits (75), Expect = 0.010
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 19 NKCDL------------ESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
NK DL + V E +M + Y +E SAK V E F
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY-LECSAKTKEGVREVF 191
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 32.5 bits (75), Expect = 0.011
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 13/65 (20%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEI----HYVMETSAKDSTNVEEAFYCLANE 68
V++NK D+E + E+ A +G +P + + +TSA T ++EA L
Sbjct: 113 VFANKQDMEQAMTSSEM----ANSLG--LPALKDRKWQIFKTSATKGTGLDEAMEWLVET 166
Query: 69 LKNRQ 73
LK+RQ
Sbjct: 167 LKSRQ 171
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 32.4 bits (74), Expect = 0.012
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 19 NKCDL------------ESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
K DL + + + + M + + + Y +E SA ++ F
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY-LECSALTQRGLKTVF 196
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 31.1 bits (71), Expect = 0.036
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
V++NK D S EV ++ + E ++ +SA + E L + +K
Sbjct: 124 VFANKQDQPGALSASEV--SKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181
Query: 73 Q 73
Q
Sbjct: 182 Q 182
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 31.3 bits (71), Expect = 0.040
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 19 NKCDLESEREVDFNEAE---EMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSA 75
NK D + + + ++ + V S VE+A LKN Q+
Sbjct: 150 NKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE 209
Query: 76 TLCNEPINTDNTN 88
++ + NT
Sbjct: 210 SILLDQEQLLNTK 222
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 30.9 bits (70), Expect = 0.046
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 19 NKCDL------------ESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
K DL + + + + M + + + Y +E SA ++ F
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY-LECSALTQRGLKTVF 171
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 30.9 bits (70), Expect = 0.053
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 9/63 (14%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
+ NK DL V + V+E A + V E ++ + R
Sbjct: 140 IQVNKRDLPDALPVEMV----RAVVD--PEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193
Query: 73 QSA 75
+
Sbjct: 194 VAG 196
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 30.7 bits (70), Expect = 0.059
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
+++NK DL S + EA E+ + SA ++ L +++ +R
Sbjct: 124 IFANKQDLPGALSCNAI--QEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 30.2 bits (69), Expect = 0.066
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEI----HYVMETSAKDSTNVEEAFYCLANE 68
V++NK DL + E+ +++G + + Y+ T A + E L+N+
Sbjct: 106 VFANKQDLPNAMNAAEI----TDKLG--LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
Query: 69 LKNRQ 73
L+N++
Sbjct: 160 LRNQK 164
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 30.1 bits (69), Expect = 0.082
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK D + +E+ + PE+ ++ SA N++E L +
Sbjct: 130 NKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDE----LVKTILKY 179
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 29.9 bits (68), Expect = 0.13
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
NK D+ E E++ + P V SA + E + +AN+L+N L
Sbjct: 282 NKMDMPEAAENLEAFKEKLTDDYP----VFPISAVTREGLRELLFEVANQLENTPEFPLY 337
Query: 79 NEP 81
+E
Sbjct: 338 DEE 340
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 29.5 bits (67), Expect = 0.13
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEI----HYVMETSAKDSTNVEEAFYCLANE 68
+++NK D++ + E+ ++ + + I ++ A + + + +
Sbjct: 122 IFANKQDVKECMTVAEI----SQFLK--LTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 175
Query: 69 LKNRQ 73
LK R
Sbjct: 176 LKIRL 180
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 29.2 bits (66), Expect = 0.16
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEI----HYVMETSAKDSTNVEEAFYCLANE 68
V++NK D+ E+ +++G + + YV T A T + + L++E
Sbjct: 135 VFANKQDMPNAMPVSEL----TDKLG--LQHLRSRTWYVQATCATQGTGLYDGLDWLSHE 188
Query: 69 LKNR 72
L R
Sbjct: 189 LSKR 192
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 29.2 bits (65), Expect = 0.24
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 19 NKCDL------------ESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
K DL + + + + M + + + Y+ E SA ++ F
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL-ECSALTQRGLKTVF 321
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 29.0 bits (66), Expect = 0.25
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 9/54 (16%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK D + + + V+ SA + ++ L + +
Sbjct: 351 NKLDRAANADALIRAIADGTG-----TEVIGISALNGDGIDT----LKQHMGDL 395
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 27.8 bits (63), Expect = 0.52
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
NK DL ++ + E E I ++ T+A ++ L +
Sbjct: 338 NKIDLVEKQLITSLEYPE------NITQIVHTAAAQKQGIDS----LETAILEI 381
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 27.5 bits (61), Expect = 0.83
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 19 NKCDLESERE------------VDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAF 62
+ DL + + + + +++ + + Y +E SA ++ F
Sbjct: 130 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY-VECSALTQKGLKTVF 184
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 27.2 bits (60), Expect = 1.1
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEI----HYVMETSAKDSTNVEEAFYCLANE 68
V++NK DL + E+ +++G + + Y+ T A + E L+N+
Sbjct: 271 VFANKQDLPNAMNAAEI----TDKLG--LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 324
Query: 69 LKNRQ 73
L+N++
Sbjct: 325 LRNQK 329
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 26.4 bits (58), Expect = 1.9
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
+++NK DL E+ E + YV + A + E L + K++
Sbjct: 428 IFANKQDLPDAMKPHEI--QEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485
Query: 73 QSATL 77
+A L
Sbjct: 486 LAAAL 490
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.2
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 51 SAKDSTNVEEAFYCLANELKNRQSATLCNEPINT----DNTNSPITL 93
S + V A + +A++L+ + + L EP D +P L
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKIL-PEPTEGFAADDEPTTPAEL 60
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 24.9 bits (55), Expect = 5.6
Identities = 7/61 (11%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 16 VWSNKCDLE---SEREVDFNEAEEMGEYVPEI----HYVMETSAKDSTNVEEAFYCLANE 68
+++NK D++ + E+ ++ + + I ++ A + + + +
Sbjct: 127 IFANKQDVKECMTVAEI----SQFLK--LTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180
Query: 69 L 69
L
Sbjct: 181 L 181
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP,
antiretroviral, HIV capsid, ligase; 1.55A {Macaca
mulatta}
Length = 186
Score = 24.5 bits (54), Expect = 7.7
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 86 NTNSPITLSNDTKSIRNKCNC 106
N S ++ D + + ++
Sbjct: 19 NNISHAVIAEDKRQVSSRAGT 39
>2cu2_A Putative mannose-1-phosphate guanylyl transferase;
mannose-1-phosphate geranyltransferase, thermus
thermophilus structural genomics; 2.20A {Thermus
thermophilus} SCOP: b.81.4.1 c.68.1.20
Length = 337
Score = 24.4 bits (54), Expect = 9.2
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 35 EEMGEYVPEIHYVMETSAKDSTNVEEAF 62
E ++P H +E ++EE +
Sbjct: 199 ELFRRHLPSHHEALER-LLAGASLEEVY 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.126 0.383
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,435,039
Number of extensions: 65399
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 110
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)