RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5780
(106 letters)
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 41.6 bits (96), Expect = 2e-06
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 7 WPDSAHDSRVWSNKCDLESEREV-DFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCL 65
V++NK D+E + + + + +TSA T ++EA L
Sbjct: 102 EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161
Query: 66 ANELKNRQ 73
LK+RQ
Sbjct: 162 VETLKSRQ 169
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 41.1 bits (95), Expect = 3e-06
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHY-VMETSAKDSTNVEEAFYCLANELK 70
NK D++ V + + + + A + + + + LK
Sbjct: 124 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 41.2 bits (95), Expect = 3e-06
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 16 VWSNKCDLESEREV-DFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
+++NK DL EA E+ + SA ++ L +++ +R
Sbjct: 108 IFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 41.0 bits (95), Expect = 4e-06
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEE 60
+ + + NK D ER V + E++ + + + METSAK NV+
Sbjct: 102 LTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPF-METSAKTGLNVDL 159
Query: 61 AFYCLANELK 70
AF +A ELK
Sbjct: 160 AFTAIAKELK 169
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 40.8 bits (94), Expect = 5e-06
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 17 WSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
NK D++ + + + + + SAK + N E+ F LA +L +
Sbjct: 113 CGNKVDIKDRKVKAKSIVFHRKKNLQ----YYDISAKSNYNFEKPFLWLARKLIGDPN 166
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 40.7 bits (94), Expect = 5e-06
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 17 WSNKCDLESEREVDFNEAEEMGEYVPEIHY-VMETSAKDSTNVEEAFYCLANELKNRQ 73
++NK D E + + + ++ +SA + E L + +K Q
Sbjct: 124 FANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 40.7 bits (94), Expect = 6e-06
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 17 WSNKCDLESEREVDFNEAEEMGEYVPEIH-YVMETSAKDSTNVEEAFYCLANELK 70
++NK DL + + + + + + YV + A + E L + K
Sbjct: 119 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 40.7 bits (94), Expect = 6e-06
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 16 VWSNKCDLESEREVD-FNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+++NK DL + E + + + SA V++ + +
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 40.0 bits (92), Expect = 9e-06
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 2 YIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEA 61
++ +G D + + E+ + + +++ + + Y +E SA ++
Sbjct: 116 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY-VECSALTQKGLKTV 174
Query: 62 FYCLANE 68
F
Sbjct: 175 FDEAIIA 181
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 40.0 bits (92), Expect = 9e-06
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 2 YIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEA 61
I VG D + K + + + + M + + + Y +E SA ++
Sbjct: 112 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY-LECSALTQRGLKTV 170
Query: 62 FYCLANEL 69
F +
Sbjct: 171 FDEAIRAV 178
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 39.9 bits (92), Expect = 1e-05
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+ NK D+ ER+V EA+ + Y ETSAKD+TNV AF +
Sbjct: 120 ILGNKIDIS-ERQVSTEEAQAWCRDNGDYPY-FETSAKDATNVAAAFEEAVRRV 171
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 39.6 bits (91), Expect = 1e-05
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEE 60
I VG + + + V E +M + Y ME SAK V E
Sbjct: 108 PIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGY-MECSAKTKDGVRE 166
Query: 61 AFYCLA 66
F
Sbjct: 167 VFEMAT 172
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 39.1 bits (90), Expect = 2e-05
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70
NK DLESEREV +E + E + METSAK T V+E F + ++
Sbjct: 116 NKVDLESEREVSSSEGRALAEEW-GCPF-METSAKSKTMVDELFAEIVRQMN 165
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 38.7 bits (89), Expect = 3e-05
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
+ NK DL R V +EA E +ETSA DSTNVEEAF + E+ S
Sbjct: 114 LVGNKSDLRHLRAVPTDEARAFAEKNNLSF--IETSALDSTNVEEAFKNILTEIYRIVS 170
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 38.1 bits (87), Expect = 4e-05
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NK DL+ +R+V E +++ + ++ Y ME SAK NV++AF+ L ++ Q
Sbjct: 115 LIGNKADLDHQRQVTQEEGQQLARQL-KVTY-MEASAKIRMNVDQAFHELVRVIRKFQ 170
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 38.2 bits (88), Expect = 4e-05
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNR 72
+ NKCD+ +R+V E++ I + METSAK + NVE AF+ LA ++K +
Sbjct: 116 ILGNKCDVNDKRQVSKERGEKL-ALDYGIKF-METSAKANINVENAFFTLARDIKAK 170
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 38.0 bits (87), Expect = 4e-05
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 48 METSAKDSTNVEEAFYCLANELKNR 72
+ETSAK NV++ F+ L E++ R
Sbjct: 144 VETSAKTRANVDKVFFDLMREIRAR 168
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 38.1 bits (87), Expect = 5e-05
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHY-VMETSAKDSTNVE 59
+ + NK D+ E EE + E ETSAK NV
Sbjct: 98 VKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVN 157
Query: 60 EAFYCLANELKNR 72
+ F + ++ +
Sbjct: 158 DVFLGIGEKIPLK 170
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 37.3 bits (85), Expect = 8e-05
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQS 74
++ S R V A + + Y ET A NV+ F +A ++ +
Sbjct: 116 DRISASSPRVVGDARARALCADMKRCSY-YETCATYGLNVDRVFQEVAQKVVTLRK 170
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 37.2 bits (85), Expect = 9e-05
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATL 77
NK DLES R+V E E + + METSAK + NVEEAF A E+ + L
Sbjct: 116 NKSDLESRRDVKREEGEAF-AREHGLIF-METSAKTACNVEEAFINTAKEIYRKIQQGL 172
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 37.3 bits (85), Expect = 9e-05
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEE 60
+ + + NKCDL REV +A++ + + I +ETSAK++ N+ E
Sbjct: 99 VRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIF--VETSAKNAININE 156
Query: 61 AFYCLANELKN 71
F ++ + +
Sbjct: 157 LFIEISRRIPS 167
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 37.2 bits (85), Expect = 1e-04
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+ NK DLE++R+V + EA++ E + + +E SAK NVE+AF A ++
Sbjct: 114 LIGNKADLEAQRDVTYEEAKQFAEEN-GLLF-LEASAKTGENVEDAFLEAAKKI 165
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 37.0 bits (84), Expect = 1e-04
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NK DLES+R+V +EA G + Y E SAK NV+EAF L ++ Q
Sbjct: 116 LVGNKADLESQRQVPRSEASAFGASH-HVAY-FEASAKLRLNVDEAFEQLVRAVRKYQ 171
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 37.0 bits (84), Expect = 1e-04
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEE 60
+ + + NK DL REV +E + + +ETSA NV+
Sbjct: 95 VQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-FDCKF-IETSAALHHNVQA 152
Query: 61 AFYCLANELKNRQ 73
F + +++ R+
Sbjct: 153 LFEGVVRQIRLRR 165
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 36.6 bits (83), Expect = 2e-04
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 17 WSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+ + + E+ Y+ T A + E L+N+L
Sbjct: 110 KQDLPNAMNAAEITDKLGLH--SLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 36.8 bits (84), Expect = 2e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQ 73
+ NK DL +REV+ +A E+ + I Y ETSA NVE+A L + + R
Sbjct: 126 LIGNKADLPDQREVNERQARELADKY-GIPY-FETSAATGQNVEKAVETLLDLIMKRM 181
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 36.3 bits (83), Expect = 2e-04
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 35 EEMGEYVPEIHYV--METSAKDSTNVEEAFYCLANELKNR 72
+ GE + + + +E+SAK+ NV E F+ LA ++ +
Sbjct: 126 ADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 36.5 bits (83), Expect = 2e-04
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 48 METSAKDSTNVEEAFYCLANELKNRQ 73
METSAK + NV+E F L N K R
Sbjct: 143 METSAKLNHNVKELFQELLNLEKRRT 168
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 36.2 bits (82), Expect = 2e-04
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDST-NVEEAFYCLANELKNR 72
+ +NK DL R+V ++ +EM I Y +ETSAKD NV++ F+ L ++ +
Sbjct: 114 LVANKVDLMHLRKVTRDQGKEMATKY-NIPY-IETSAKDPPLNVDKTFHDLVRVIRQQ 169
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 36.1 bits (82), Expect = 3e-04
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 5 VGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYC 64
VG D K ++ + AE++ + + Y +E SA ++ F
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDE 171
Query: 65 LANELKNRQ 73
Sbjct: 172 AILAALEPP 180
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 35.8 bits (81), Expect = 3e-04
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHY-VMETSAKDSTNVEEAFYCLANELK 70
V NK DL + + + + S K+ N++ L K
Sbjct: 109 VLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 35.7 bits (81), Expect = 3e-04
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANEL 69
+ NK DL +R+V E E + + + + +ETSAK NV++ F +A L
Sbjct: 110 LVGNKTDLADKRQVSIEEGERKAKEL-NVMF-IETSAKAGYNVKQLFRRVAAAL 161
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 35.0 bits (79), Expect = 5e-04
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 48 METSAKDSTNVEEAFYCLANELK 70
+E+SAK NV E FY L ++
Sbjct: 144 LESSAKSKINVNEIFYDLVRQIN 166
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 35.3 bits (80), Expect = 5e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 47 VMETSAKDSTNVEEAFYCLANELKNR 72
+ETSA NVEEAF A ++ N+
Sbjct: 144 FLETSALTGENVEEAFVQCARKILNK 169
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 35.1 bits (79), Expect = 5e-04
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 48 METSAKDSTNVEEAFYCLANELKNRQ 73
+ETSA NV+E F + +++ R+
Sbjct: 146 IETSAAVQHNVKELFEGIVRQVRLRR 171
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 34.4 bits (78), Expect = 9e-04
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEE 60
+ + + + NK D + REVD NE + +E SAK V+
Sbjct: 103 NELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARK--HSMLFIEASAKTCDGVQC 159
Query: 61 AFYCLANELKNRQS 74
AF L ++
Sbjct: 160 AFEELVEKIIQTPG 173
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 34.5 bits (78), Expect = 0.001
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 48 METSAKDSTNVEEAFYCLANELKNR 72
E SAKD+ NV++ F L + + +
Sbjct: 145 FEASAKDNINVKQTFERLVDVICEK 169
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 34.3 bits (77), Expect = 0.001
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 45 HYVMETSAKDSTNVEEAFYCLANELKNRQS 74
ETSAK++ NVE+AF +A +++
Sbjct: 143 IPYFETSAKEAINVEQAFQTIARNALKQET 172
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 34.2 bits (77), Expect = 0.001
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELK 70
+ NKCDL + + Y I Y +ETSAK VE+AFY L E++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSY--GIPY-IETSAKTRQGVEDAFYTLVREIR 164
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 34.0 bits (77), Expect = 0.001
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 46 YVMETSAKDSTNVEEAFYCLANEL 69
Y +ETSAK+S NVE+ F LA L
Sbjct: 143 YYLETSAKESDNVEKLFLDLACRL 166
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 33.8 bits (76), Expect = 0.001
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 48 METSAKDSTNVEEAFYCLANELK 70
METSAK S NV E F +A +L
Sbjct: 146 METSAKTSMNVNEIFMAIAKKLP 168
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 33.9 bits (76), Expect = 0.002
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANE-LKNRQ 73
+ NK D E +++ ++ + + TSAK++ NV+ AF +A L+ Q
Sbjct: 117 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 33.9 bits (76), Expect = 0.002
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTN-VE 59
+ VG + + V +++ M + + Y +E SA S N V
Sbjct: 108 KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY-IECSALQSENSVR 166
Query: 60 EAFYCLANELKNR 72
+ F+ N+
Sbjct: 167 DIFHVATLACVNK 179
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 33.7 bits (76), Expect = 0.002
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 19 NKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLANELKNRQSATLC 78
+ + + +ETSA DSTNVE+AF +A ++K S
Sbjct: 117 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 176
Query: 79 NEPINTDNTNSPITLSN 95
NE + L
Sbjct: 177 NETTQKKEDKGNVNLKG 193
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 33.0 bits (74), Expect = 0.003
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEE 60
+ + + NK DLE ER V EAE E V HY TSAK + +EE
Sbjct: 98 VKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY--HTSAKQNKGIEE 155
Query: 61 AFYCLANEL 69
F L +
Sbjct: 156 LFLDLCKRM 164
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 32.0 bits (71), Expect = 0.006
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 48 METSAKDSTNVEEAFYCLANELK 70
+E+SAK++ + F + E +
Sbjct: 144 LESSAKENQTAVDVFRRIILEAE 166
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 32.0 bits (71), Expect = 0.007
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEE 60
V + + NK DL + + EAE + + + ++ + TS K+ NV E
Sbjct: 96 WREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL-KLRF-YRTSVKEDLNVSE 153
Query: 61 AFYCLANEL 69
F LA +
Sbjct: 154 VFKYLAEKH 162
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 31.5 bits (70), Expect = 0.009
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 17 WSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDST-NVEEAFYCLANELKNRQ 73
NK DL+ R+V E E++ + Y E SA N+ E FY L E++ R+
Sbjct: 112 VGNKADLDHSRQVSTEEGEKLATELACAFY--ECSACTGEGNITEIFYELCREVRRRR 167
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.6 bits (70), Expect = 0.009
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 17 WSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEEAFYCLA 66
++ +L S + + E + S EAF L+
Sbjct: 116 AVSEAELRSALGLLNTTGSQRIEGQRPVEVF-MCSVVMRNGYLEAFQWLS 164
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 31.6 bits (70), Expect = 0.011
Identities = 8/69 (11%), Positives = 15/69 (21%)
Query: 1 MYIFVGWPDSAHDSRVWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDSTNVEE 60
+ I D + + + + E V S E
Sbjct: 117 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 176
Query: 61 AFYCLANEL 69
F +A +
Sbjct: 177 GFRWMAQYI 185
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 31.2 bits (69), Expect = 0.011
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 16 VWSNKCDLESEREVDFNEAEEMGEYVPEIHYVMETSAKDST---NVEEAFYCLA 66
+ NKCDL S +V + A++ + + ETSAK+ +VE F LA
Sbjct: 114 LVGNKCDLRSAIQVPTDLAQKFADTH-SMPL-FETSAKNPNDNDHVEAIFMTLA 165
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 28.4 bits (62), Expect = 0.14
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 46 YVMETSAKDSTNVEEAF 62
Y T A D+ NV+ F
Sbjct: 168 YTHFTCATDTKNVQFVF 184
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.4 bits (62), Expect = 0.14
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 46 YVMETSAKDSTNVEEAF 62
Y T A D+ N+ F
Sbjct: 171 YSHFTCATDTENIRFVF 187
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.4 bits (57), Expect = 0.64
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 46 YVMETSAKDSTNVEEAF 62
Y T+A ++ N+ F
Sbjct: 171 YHHFTTAINTENIRLVF 187
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 24.9 bits (53), Expect = 2.1
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 12 HDSRVWSNKCDLESEREVDFNEAEEMG---EYVPEIHYVMETSAKDSTNVEE 60
+ + NK D+ S+ E + E ++ SA N++
Sbjct: 141 KNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDS 192
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 23.4 bits (49), Expect = 6.3
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 15 RVWSNKCDLESEREVDFNE---AEEMGEYVPEIHYVMETSAKDSTNVEE 60
+ NK +L + + N E + V E ++ SA N++
Sbjct: 136 IIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDV 184
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 23.4 bits (50), Expect = 8.0
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 16 VWSNKCDLESEREVDFNE--------AEEMGEYVPEIHYVMETSAKDSTNVEEA 61
V NK D E F E +++G + +V S + N+ EA
Sbjct: 149 VAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVP-ISGWNGDNMIEA 201
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.126 0.383
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 360,943
Number of extensions: 13104
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 58
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)