BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5781
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 75/85 (88%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D+ YDFLFK+VL+GD VGKTCVV RF++G F E+ G+TIGVDF+MKT+ I GK+VKLQI
Sbjct: 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTITQSYYRSANG I+
Sbjct: 83 WDTAGQERFRTITQSYYRSANGAIL 107
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 70/84 (83%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ YDFLFK+VLIG+ GVGKTC+V RF G F G TIGVDF +KTV I+G+KVKLQIW
Sbjct: 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 76 DTAGQERFRTITQSYYRSANGVII 99
DTAGQERFR+ITQSYYRSAN +I+
Sbjct: 81 DTAGQERFRSITQSYYRSANALIL 104
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 7/110 (6%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKY 123
TAGQERFRTIT SYYR A+G+I+ +VT E Y + W ++ D+Y
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE----IDRY 110
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 7/110 (6%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKY 123
TAGQERFRTIT SYYR A+G+I+ +VT E Y + W ++ D+Y
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE----IDRY 110
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 81/117 (69%), Gaps = 5/117 (4%)
Query: 9 HPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68
P + + YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK
Sbjct: 21 RPXSSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 80
Query: 69 KVKLQIWDTAGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
+KLQIWDTAGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 134
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 117
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 5/109 (4%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
TAGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 109
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 5/109 (4%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
TAGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 107
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 77/108 (71%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 117
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 5/109 (4%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWD
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
TAGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 126
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 77/109 (70%), Gaps = 5/109 (4%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
YD LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
TAGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 107
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 77/102 (75%), Gaps = 3/102 (2%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
TAGQERFRTIT +YYR A G+++ ++T+ + + RNW +
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN 105
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 70/90 (77%), Gaps = 2/90 (2%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIG+ GVGK+C++ RF + +TIGVDF +KTV +DGK VKLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE 105
AGQERFRTIT SYYR ++G+II +VT E
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQE 94
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 70/90 (77%), Gaps = 2/90 (2%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIG+ GVGK+C++ RF + +TIGVDF +KTV +DGK VKLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE 105
AGQERFRTIT SYYR ++G+II +VT E
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQE 94
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 70/90 (77%), Gaps = 2/90 (2%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIG+ GVGK+C++ RF + +TIGVDF +KTV +DGK VKLQIWDT
Sbjct: 18 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE 105
AGQERFRTIT SYYR ++G+II +VT E
Sbjct: 78 AGQERFRTITSSYYRGSHGIIIVYDVTDQE 107
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 67/83 (80%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
YD+LFK++LIGD GVGK+C++ RF + + +TIGVDF ++T++++ K VKLQIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQERFRTIT SYYR A+G+II
Sbjct: 65 TAGQERFRTITSSYYRGAHGIII 87
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 74/97 (76%), Gaps = 3/97 (3%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 79 GQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNW 112
GQERFRTIT +YYR A G+++ ++T+ + + RNW
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 100
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 76/107 (71%), Gaps = 3/107 (2%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
++YDFLFK ++IG+ G GK+C++H+F F + + +TIGV+F K +N+ GK VKLQIW
Sbjct: 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 76 DTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTL 119
DTAGQERFR++T+SYYR A G ++ ++TS E Y NW A L
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 112
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 76/107 (71%), Gaps = 3/107 (2%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
++YDFLFK ++IG+ G GK+C++H+F F + + +TIGV+F K +N+ GK VKLQIW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 76 DTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTL 119
DTAGQERFR++T+SYYR A G ++ ++TS E Y NW A L
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 111
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 67/86 (77%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
+DD YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K Q
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAGQER+R IT +YYR A G ++
Sbjct: 82 IWDTAGQERYRAITSAYYRGAVGALL 107
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 65/83 (78%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
SYD + K++LIGD GVGK+C++ RF F TIG+DF +KTV+I+GKKVKLQ+WD
Sbjct: 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQERFRTIT +YYR A G+I+
Sbjct: 76 TAGQERFRTITTAYYRGAMGIIL 98
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
++YDFLFK ++IG+ G GK+C++H+F F + + +TIGV+F K +N+ GK VKLQIW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 76 DTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTL 119
DTAG ERFR++T+SYYR A G ++ ++TS E Y NW A L
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 109
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
YD LFK+++IGD GVGK+ ++ RF F TIGVDF ++TV I+G+KVKLQIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE 105
TAGQERFRTIT +YYR +GVI+ +VTS E
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAE 95
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 73/103 (70%), Gaps = 5/103 (4%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 83 FRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
FRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 100
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 66/86 (76%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
+DD YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K Q
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAG ER+R IT +YYR A G ++
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALL 107
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 66/86 (76%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
+DD YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K Q
Sbjct: 4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAG ER+R IT +YYR A G ++
Sbjct: 64 IWDTAGLERYRAITSAYYRGAVGALL 89
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 63/81 (77%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D + K++LIGD GVGK+C++ RF F TIG+DF +KTV+I+GKKVKLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 79 GQERFRTITQSYYRSANGVII 99
GQERFRTIT +YYR A G+I+
Sbjct: 61 GQERFRTITTAYYRGAMGIIL 81
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 65/83 (78%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
SYD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K QIWD
Sbjct: 16 SYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 75
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQER+R IT +YYR A G ++
Sbjct: 76 TAGQERYRAITSAYYRGAVGALL 98
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
DFLFK ++IG G GK+C++H+F F + + +TIGV+F + VN+ GK VKLQIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 79 GQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTL 119
GQERFR++T+SYYR A G ++ ++TS E Y W A TL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL 126
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 63/81 (77%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D + K++LIGD GVGK+C++ RF F TIG+DF +KTV+I+GKKVKLQIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 79 GQERFRTITQSYYRSANGVII 99
GQERFRTIT +YYR A G+I+
Sbjct: 61 GQERFRTITTAYYRGAXGIIL 81
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 63/82 (76%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD LFK+VLIGD GVGK+ ++ RF +F + +TIGV+F+ +T+ I+GK++K QIWDT
Sbjct: 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQER+R IT +YYR A G +I
Sbjct: 70 AGQERYRAITSAYYRGAVGALI 91
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT-GNTIGVDFSMKTVNIDGKKVKLQI 74
D YD FKV+L+GD GVGKTC++ RF+ G F+ T +T+G+DF K +++DG KVKLQ+
Sbjct: 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFR++T +YYR A+ +++
Sbjct: 65 WDTAGQERFRSVTHAYYRDAHALLL 89
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 63/81 (77%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D + K++LIGD GVGK+C++ RF F TIG+DF +KTV+I+GKKVKLQ+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 79 GQERFRTITQSYYRSANGVII 99
GQERFRTIT +YYR A G+I+
Sbjct: 61 GQERFRTITTAYYRGAXGIIL 81
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 64/82 (78%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQER+R IT +YYR A G ++
Sbjct: 62 AGQERYRRITSAYYRGAVGALL 83
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 5/102 (4%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 84 RTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
RTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 99
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 62/79 (78%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
+ K++LIGD GVGK+C++ RF F TIG+DF +KTV+I+GKKVKLQ+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 81 ERFRTITQSYYRSANGVII 99
ERFRTIT +YYR A G+I+
Sbjct: 67 ERFRTITTAYYRGAMGIIL 85
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 64/84 (76%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
D YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K QIW
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 76 DTAGQERFRTITQSYYRSANGVII 99
DTAG ER+R IT +YYR A G ++
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALL 86
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 63/83 (75%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+Y ++FK ++IGD GVGK+C++H+F F+ +TIGV+F + + + G+K+KLQIWD
Sbjct: 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQERFR +T+SYYR A G ++
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALM 93
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 64/82 (78%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK+VLIGD GVGK+ ++ RF + +F ++ +TIGV+F+ +T+ ++ KK+K QIWDT
Sbjct: 7 YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 78 AGQERFRTITQSYYRSANGVII 99
AG ER+R IT +YYR A G +I
Sbjct: 67 AGLERYRAITSAYYRGAVGALI 88
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 63/82 (76%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 78 AGQERFRTITQSYYRSANGVII 99
AG ER+R IT +YYR A G ++
Sbjct: 62 AGLERYRAITSAYYRGAVGALL 83
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 61/81 (75%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
DF +V++IG GVGKT ++ RF F E +T+GVDF +KTV + GKK++LQIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 79 GQERFRTITQSYYRSANGVII 99
GQERF +IT +YYRSA G+I+
Sbjct: 84 GQERFNSITSAYYRSAKGIIL 104
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 62/83 (74%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+Y ++FK ++IGD GVGK+C++H+F F+ +TIGV+F + + + G+K+KLQIWD
Sbjct: 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQ RFR +T+SYYR A G ++
Sbjct: 86 TAGQGRFRAVTRSYYRGAAGALM 108
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
+FK+++IGD VGKTC+ +RF +G F ++T TIGVDF + V+IDG+++K+Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 81 ERFR-TITQSYYRSANGVI 98
ERFR ++ Q YYR+ + V+
Sbjct: 89 ERFRKSMVQHYYRNVHAVV 107
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
+FK+++IGD VGKTC+ +RF +G F ++T TIGVDF + V+IDG+++K+Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 81 ERFR-TITQSYYRSANGVI 98
ERFR ++ Q YYR+ + V+
Sbjct: 80 ERFRKSMVQHYYRNVHAVV 98
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 60/80 (75%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
+LFK ++IGD GVGK+C++ +F F TIGV+F + VNIDGK++KLQIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 80 QERFRTITQSYYRSANGVII 99
QE FR+IT+SYYR A G ++
Sbjct: 80 QESFRSITRSYYRGAAGALL 99
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 61/83 (73%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+Y +LFK ++IGD GVGK+C++ +F F TIGV+F + + IDGK++KLQIWD
Sbjct: 6 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 65
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQE FR+IT+SYYR A G ++
Sbjct: 66 TAGQESFRSITRSYYRGAAGALL 88
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKK-VKLQI 74
D YD+LFK+VLIGD GVGK+ ++ RF +F ++ +TIGV+F+ K++ + K +K QI
Sbjct: 2 DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQER+R IT +YYR A G ++
Sbjct: 62 WDTAGQERYRAITSAYYRGAVGALL 86
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 11/123 (8%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ Y+F+FKVVLIG+ GVGKT ++ RF +F + TIGV+FS +TV + VK QIW
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 76 DTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKYKFGHAFSTS 132
DTAG ER+R IT +YYR A G ++ ++T + Y W K+ L+D HA +T
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE---LYD-----HAEATI 116
Query: 133 LAM 135
+ M
Sbjct: 117 VVM 119
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 58/78 (74%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+++IG+ GVGK+ ++ RF F + TIGVDF +KT+++DG K KL IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 82 RFRTITQSYYRSANGVII 99
RFRT+T SYYR A GVI+
Sbjct: 76 RFRTLTPSYYRGAQGVIL 93
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 11/123 (8%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ Y+F+FKVVLIG+ GVGKT ++ RF +F + TIGV+FS +TV + VK QIW
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 76 DTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKYKFGHAFSTS 132
DTAG ER+R IT +YYR A G ++ ++T + Y W K+ L+D HA +T
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE---LYD-----HAEATI 131
Query: 133 LAM 135
+ M
Sbjct: 132 VVM 134
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 72/105 (68%), Gaps = 3/105 (2%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
++D++FK+++IG+ VGKT + R+ F +T+G+DF +KT+ + K++KLQIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVT 118
TAGQER+RTIT +YYR A G I+ ++T+ E + ++W Q T
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 105
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 57/78 (73%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+VL GD VGK+ + R +F E T+GVDF MKT+ +DG++ LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 82 RFRTITQSYYRSANGVII 99
RFR+I +SY+R A+GV++
Sbjct: 89 RFRSIAKSYFRKADGVLL 106
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 9 HPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68
N + ++D++FK+++IG+ VGKT + R+ F +T+G+DF +KTV K
Sbjct: 11 RENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 70
Query: 69 KVKLQIWDTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVT 118
+VKLQIWDTAGQER+RTIT +YYR A G I+ ++T+ E + ++W Q T
Sbjct: 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT 123
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
+D+ FK+++IG+ VGKT + R+ F +T+G+DF +KT+ + K++KLQIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVT 118
AG ER+RTIT +YYR A G I+ ++T+ E + ++W Q T
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKT 108
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 58/81 (71%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D++FK++LIG+ VGKT + R+ F +T+G+DF +KTV K++KLQIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 79 GQERFRTITQSYYRSANGVII 99
GQER+RTIT +YYR A G ++
Sbjct: 80 GQERYRTITTAYYRGAMGFLL 100
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ + + +NW K+
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 100
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 13/114 (11%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-------- 66
D YD+L K++ +GD GVGKT ++R+ F K T+G+DF K V D
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 67 GK--KVKLQIWDTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
GK KV LQ+WDTAG ERFR++T +++R A G ++ ++TS + + RNW Q
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQ 118
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + +NW K+
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKE 104
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 13/114 (11%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-------- 66
D YD+L K++ +GD GVGKT ++R+ F K T+G+DF K V D
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 67 GK--KVKLQIWDTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
GK KV LQ+WDTAG ERFR++T +++R A G ++ ++TS + + RNW Q
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 118
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + +NW K+
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 104
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 13/114 (11%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-------- 66
D YD+L K++ +GD GVGKT ++R+ F K T+G+DF K V D
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 67 GK--KVKLQIWDTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
GK KV LQ+WDTAG ERFR++T +++R A G ++ ++TS + + RNW Q
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQ 118
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + +NW K+
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 103
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 13/112 (11%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK-------- 68
YD+L K++ +GD GVGKT ++R+ F K T+G+DF K V + +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 69 --KVKLQIWDTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
KV LQ+WDTAGQERFR++T +++R A G ++ ++TS + + RNW Q
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 132
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
LFKV+L+GD GVGK+ +++R+ + F + +TIGV+F K + +DG V +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 81 ERFRTITQSYYRSANGVIIEVT---SVEYCYQRNWHKQAVTLFD 121
ERFR++ +YR ++ ++ + S + NW K+ + D
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 112
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
LFK++L+GD GVGK+ +++R+ + F + +TIGV+F K + +DG V +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 81 ERFRTITQSYYRSANGVIIEVT---SVEYCYQRNWHKQAVTLFD 121
ERFR++ +YR ++ ++ + S + NW K+ + D
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 114
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
LFKV+L+GD GVGK+ +++R+ + F + +TIGV+F K + +DG V +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 81 ERFRTITQSYYRSANGVIIEVT---SVEYCYQRNWHKQAVTLFD 121
ERFR++ +YR ++ ++ + S + NW K+ + D
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 110
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 13/117 (11%)
Query: 12 TFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID----- 66
+ D YD+L K++ +GD GVGKT ++R+ F K T+G+DF K V D
Sbjct: 2 SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 67 ---GK--KVKLQIWDTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
GK KV LQ+WDTAG ERFR++T +++R A G ++ ++TS + + RNW Q
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 118
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVK-LQIWDTAG 79
+ KV+++GD GVGKT ++HR+ + + ++ TIG DF K V +DG KV +Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 80 QERFRTITQSYYRSAN 95
QERF+++ ++YR A+
Sbjct: 68 QERFQSLGVAFYRGAD 83
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 13/117 (11%)
Query: 12 TFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI------ 65
+ D YD+L K + +GD GVGKT V++++ G F K T+G+DF K V
Sbjct: 2 SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 66 ----DGKKVKLQIWDTAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
G+++ LQ+WDTAG ERFR++T +++R A G ++ ++T+ + + RNW Q
Sbjct: 62 GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ 118
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + +NW K+
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 103
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + +NW K+
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 103
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
S + FKVVL+G+ VGKT +V R+ F +K T+G F K +NI GK+V L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVEYCYQ--RNWHKQ 115
TAGQERF + YYR +NG I+ ++T E +Q +NW K+
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITD-EDSFQKVKNWVKE 103
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + +NW K+
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 103
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + +NW K+
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 103
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + +NW K+
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 103
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 55/76 (72%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
L KV+L+GD GVGK+ +++R+ + F + +TIGV+F + + +DG+ V LQIWDTAG
Sbjct: 6 LLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAG 65
Query: 80 QERFRTITQSYYRSAN 95
QERF+++ +YR A+
Sbjct: 66 QERFKSLRTPFYRGAD 81
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ + + +NW K+
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 102
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F ++V +D VK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + + W K+
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKE 105
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ E + +NW K+
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE 102
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TI F +TV +D VK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
R+ ++ YYR A I+ ++T+ + + +NW K+
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE 102
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+VL+G+ VGK+ +V RF S DF E TIG F + V I+ VK +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 82 RFRTITQSYYRSANG--VIIEVTSVE-YCYQRNWHKQ 115
RF ++ YYR+A V+ +VT + + R+W K+
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE 100
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 55/79 (69%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++GD GVGKT +++++ + F + TIG DF K V +D + V +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81 ERFRTITQSYYRSANGVII 99
ERF+++ ++YR A+ ++
Sbjct: 68 ERFQSLGVAFYRGADCCVL 86
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 55/79 (69%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++GD GVGKT +++++ + F + TIG DF K V +D + V +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81 ERFRTITQSYYRSANGVII 99
ERF+++ ++YR A+ ++
Sbjct: 68 ERFQSLGVAFYRGADCCVL 86
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
S + FKVVL+G+ VGKT +V R+ F +K T+ F K +NI GK+V L IWD
Sbjct: 16 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 75
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVEYCYQ--RNWHKQ 115
TAGQERF + YYR +NG I+ ++T E +Q +NW K+
Sbjct: 76 TAGQERFHALGPIYYRDSNGAILVYDITD-EDSFQKVKNWVKE 117
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
S + FKVVL+G+ VGKT +V R+ F +K T+ F K +NI GK+V L IWD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 61
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVEYCYQ--RNWHKQ 115
TAGQERF + YYR +NG I+ ++T E +Q +NW K+
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITD-EDSFQKVKNWVKE 103
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 55/79 (69%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++GD GVGKT +++++ + F + TIG DF K V +D + V +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 81 ERFRTITQSYYRSANGVII 99
ERF+++ ++YR A+ ++
Sbjct: 68 ERFQSLGVAFYRGADCCVL 86
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+VL+GD G GK+ +V RF FVE +TIG F +T+ ++ VK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 83 FRTITQSYYRSANGVII 99
+ ++ YYR A II
Sbjct: 74 YHSLAPMYYRGAAAAII 90
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V +G+ VGKT ++ RF F +TIG+DF KT+ +D V+LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 82 RFRTITQSYYRSANGVII 99
RFR++ SY R + I+
Sbjct: 62 RFRSLIPSYIRDSAAAIV 79
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 54/79 (68%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++GD GVGKT +++++ + F + TIG DF K V +D + V +QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 81 ERFRTITQSYYRSANGVII 99
ERF+++ ++YR A+ ++
Sbjct: 68 ERFQSLGVAFYRGADCCVL 86
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + ++LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 82 RFRTITQSYYR-SANGVII-EVTSV 104
RFR++ SY R SA V++ ++T+V
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNV 91
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 82 RFRTITQSYYRSANGVII--EVTSV 104
RFR++ SY R + ++ ++T+V
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNV 86
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
RFR++ SY R + ++
Sbjct: 63 RFRSLIPSYIRDSTVAVV 80
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+V++G+ VGK+ ++ R+ G F + TIGVDF + + ++ + V+L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 82 RFRTITQSYYRSANGVII 99
F IT++YYR A ++
Sbjct: 66 EFDAITKAYYRGAQACVL 83
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 82 RFRTITQSYYRSANGVII 99
RFR++ SY R + ++
Sbjct: 75 RFRSLIPSYIRDSTVAVV 92
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV L+GD GVGK+ +V RF F TIG F KTV + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
RFR + YYR + II ++T E + +NW ++
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE 102
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTLFDKYKF---GHAFSTSLAM 135
+F + YY A II +VTS V Y NWH+ V + + G+
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 136 PQVRPCLFHK------FGHASSSAMPF--PQVW--------PCLKFGHAFSTSLAMPQV- 178
+ + +FH+ + ++ S F P +W P L+F +LA P+V
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF--VAXPALAPPEVV 188
Query: 179 -RPCLFHKFGH----ASSSAMP 195
P L ++ H A ++A+P
Sbjct: 189 XDPALAAQYEHDLEVAQTTALP 210
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTLFDKYKF---GHAFSTSLAM 135
+F + YY A II +VTS V Y NWH+ V + + G+
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 136 PQVRPCLFHK------FGHASSSAMPF--PQVW--------PCLKFGHAFSTSLAMPQV- 178
+ + +FH+ + ++ S F P +W P L+F +LA P+V
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF--VAMPALAPPEVV 188
Query: 179 -RPCLFHKFGH----ASSSAMP 195
P L ++ H A ++A+P
Sbjct: 189 MDPALAAQYEHDLEVAQTTALP 210
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + ++LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 82 RFRTITQSYYR-SANGVII-EVTSV 104
RFR++ SY R SA V++ ++T+V
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNV 98
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTLFDKYKF---GHAFSTSLAM 135
+F + YY A II +VTS V Y NWH+ V + + G+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 136 PQVRPCLFHK------FGHASSSAMPF--PQVW--------PCLKFGHAFSTSLAMPQV- 178
+ + +FH+ + ++ S F P +W P L+F +LA P+V
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF--VAMPALAPPEVV 193
Query: 179 -RPCLFHKFGH----ASSSAMP 195
P L ++ H A ++A+P
Sbjct: 194 MDPALAAQYEHDLEVAQTTALP 215
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTLFDKYKF---GHAFSTSLAM 135
+F + YY A II +VTS V Y NWH+ V + + G+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 136 PQVRPCLFHK------FGHASSSAMPF--PQVW--------PCLKFGHAFSTSLAMPQV- 178
+ + +FH+ + ++ S F P +W P L+F +LA P+V
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF--VAMPALAPPEVV 188
Query: 179 -RPCLFHKFGH----ASSSAMP 195
P L ++ H A ++A+P
Sbjct: 189 MDPALAAQYEHDLEVAQTTALP 210
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTLFDKYKF---GHAFSTSLAM 135
+F + YY A II +VTS V Y NWH+ V + + G+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 136 PQVRPCLFHK------FGHASSSAMPF--PQVW--------PCLKFGHAFSTSLAMPQV- 178
+ + +FH+ + ++ S F P +W P L+F +LA P+V
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF--VAMPALAPPEVV 188
Query: 179 -RPCLFHKFGH----ASSSAMP 195
P L ++ H A ++A+P
Sbjct: 189 MDPALAAQYEHDLEVAQTTALP 210
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + V+LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 82 RFRTITQSYYRSANGVII--EVTSV 104
RFR++ SY R + ++ ++T+V
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNV 91
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTLFDKYKF---GHAFSTSLAM 135
+F + YY A II +VTS V Y NWH+ V + + G+
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123
Query: 136 PQVRPCLFHK------FGHASSSAMPF--PQVW--------PCLKFGHAFSTSLAMPQV- 178
+ + +FH+ + ++ S F P +W P L+F +LA P+V
Sbjct: 124 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF--VAMPALAPPEVV 181
Query: 179 -RPCLFHKFGH----ASSSAMP 195
P L ++ H A ++A+P
Sbjct: 182 MDPALAAQYEHDLEVAQTTALP 203
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + V+LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 82 RFRTITQSYYRSANGVII--EVTSV 104
RFR++ SY R + ++ ++T+V
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNV 101
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTL 119
+F + YY A II +VTS V Y NWH+ V +
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTLFDKYKF---GHAFSTSLAM 135
++ + YY A II +VTS V Y NWH+ V + + G+
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 136 PQVRPCLFHK------FGHASSSAMPF--PQVW--------PCLKFGHAFSTSLAMPQV- 178
+ + +FH+ + ++ S F P +W P L+F +LA P+V
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF--VAMPALAPPEVV 188
Query: 179 -RPCLFHKFGH----ASSSAMP 195
P L ++ H A ++A+P
Sbjct: 189 MDPALAAQYEHDLEVAQTTALP 210
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV L+GD GVGK+ ++ RF F TIG F KTV + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 82 RFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQ 115
RFR + YYR + II ++T E + +NW ++
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE 103
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTL 119
+F + YY A II +VTS V Y NWH+ V +
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTL 119
+F + YY A II +VTS V Y NWH+ V +
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 30/202 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTLFDKYKF---GHAFSTSLAM 135
+F + YY A II +VTS V Y NWH+ V + + G+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 136 PQVRPCLFHK------FGHASSSAMPF--PQVW--------PCLKFGHAFSTSLAMPQV- 178
+ + +FH+ + ++ S F P +W P L+F +LA P+V
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF--VAMPALAPPEVV 188
Query: 179 -RPCLFHKFGH----ASSSAMP 195
P L ++ H A ++A+P
Sbjct: 189 MDPALAAQYEHDLEVAQTTALP 210
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K TIGV+ + + ++K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTL 119
+F + YY +A II +VTS + Y NWH+ V +
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV 113
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 30/202 (14%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+ +K T+GV+ + + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTLFDKYKF---GHAFSTSLAM 135
+F + YY A II +VTS V Y NWH+ V + + G+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 136 PQVRPCLFHK------FGHASSSAMPF--PQVW--------PCLKFGHAFSTSLAMPQV- 178
+ + +FH+ + ++ S F P +W P L+F +LA P+V
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF--VAMPALAPPEVV 193
Query: 179 -RPCLFHKFGH----ASSSAMP 195
P L ++ H A ++A+P
Sbjct: 194 MDPALAAQYEHDLEVAQTTALP 215
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV L+GD GVGK+ +V RF F TIG F KTV + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 82 RFRTITQSYYR-SANGVII-EVTSVEYCYQ-RNWHKQ 115
RF ++ YYR SA VI+ ++T + Y + W K+
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE 120
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTL 119
+F + YY A II +VTS V Y NWH+ V +
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 113
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K TIGV+ + + ++K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTL 119
+F + YY +A II +VTS + Y NWH+ V +
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV 106
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K TIGV+ + + ++K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTL 119
+F + YY +A II +VTS + Y NWH+ V +
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV 105
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 82 RFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQAVTL 119
+F + YY A II +VTS V Y NWH+ V +
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 107
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG-VDFSMKTVNIDGKKVKLQIWDT 77
+ +K+ LIGD GVGKT ++R G F + T+G V+ + ++ G +K +WDT
Sbjct: 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDT 68
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYC 107
AGQE+ + YY A+G I+ +VTS C
Sbjct: 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITC 100
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals
A Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T + K V +DG++V++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 81 ERFRTITQSYYRSANG 96
E + I +Y+RS G
Sbjct: 77 EDYAAIRDNYFRSGEG 92
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T + K V +DG++V++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 81 ERFRTITQSYYRSANG 96
E + I +Y+RS G
Sbjct: 65 EDYAAIRDNYFRSGEG 80
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T + K V +DG++V++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 81 ERFRTITQSYYRSANG 96
E + I +Y+RS G
Sbjct: 63 EDYAAIRDNYFRSGEG 78
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T + K V +DG++V++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 81 ERFRTITQSYYRSANG 96
E + I +Y+RS G
Sbjct: 73 EDYAAIRDNYFRSGEG 88
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T D K V +DG++V++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 81 ERFRTITQSYYRSANGVII 99
E + I +Y+RS G ++
Sbjct: 62 EDYAAIRDNYFRSGEGFLL 80
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T D K V +DG++V++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 81 ERFRTITQSYYRSANGVII 99
E + I +Y+RS G ++
Sbjct: 66 EDYAAIRDNYFRSGEGFLL 84
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T + K V +DG++V++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 81 ERFRTITQSYYRSANG 96
E + I +Y+RS G
Sbjct: 65 EDYAAIRDNYFRSGEG 80
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V +GD VGKTC++ + F T+ +FS V +DG V L +WDTAGQE
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
+ + YR A+ ++ + + N HK+
Sbjct: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENIHKK 99
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT V+++ + G+ + T TIG F+++TV K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
R R++ + YYR+ GVI V S
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDS 94
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V +GD VGKTC++ + S F T+ +FS V +DG V L +WDTAGQE
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 65
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFG 126
+ + YR A+ I+ + + N K+ + Y G
Sbjct: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG 110
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT V+++ + G+ + T TIG F+++TV K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIG--FNVETVQY--KNISFTVWDVGGQD 55
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
R R++ + YYR+ GVI V S
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDS 77
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT V+++ + G+ + T TIG F+++TV K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
R R++ + YYR+ GVI + S
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDS 94
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
KVVL+GD G GKT ++ F G F E T+ + M + + GK V L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 83 FRTITQSYYRSANGVII--EVTS 103
+ + +Y A+ +++ +VTS
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTS 117
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V +GD VGKTC++ + S F T+ +FS V ++G V L +WDTAGQE
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFG 126
+ + YR A+ I+ + + N K+ + Y G
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG 112
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + +F G FVEK TI D K V +D ++ L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 82 RFRTITQSYYRSANG 96
+F + Y ++ G
Sbjct: 65 QFTAMRDLYMKNGQG 79
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ G F E T+ ++ + V +DG++V+L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 83 FRTITQSYYRSANGVII 99
+ + Y +N V+I
Sbjct: 71 YDRLRPLSYPDSNVVLI 87
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 67 YDRLRPLSYPDTDVILM 83
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + +F G FVEK TI D K V +D ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 82 RFRTITQSYYRSANG 96
+F + Y ++ G
Sbjct: 63 QFTAMRDLYMKNGQG 77
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 37/115 (32%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK------------- 68
+K VL+G+ VGK+ +V R F E T TIG F VN++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 69 ------------------------KVKLQIWDTAGQERFRTITQSYYRSANGVII 99
+K IWDTAGQER+ +I YYR A I+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F +F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 86 YDRLRPLSYPDTDVILM 102
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 70 YDRLRPLSYPDTDVILM 86
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 86 YDRLRPLSYPDTDVILM 102
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 67 YDRLRPLSYPDTDVILM 83
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 86 YDRLRPLSYPDTDVILM 102
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 68 YDRLRPLSYPDTDVILM 84
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + +F G FVEK TI D K V +D ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 82 RFRTITQSYYRSANG 96
+F + Y ++ G
Sbjct: 63 QFTAMRDLYMKNGQG 77
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 69 YDRLRPLSYPDTDVILM 85
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 66 YDRLRPLSYPDTDVILM 82
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 68 YDRLRPLSYPDTDVILM 84
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++ +F +G+ V+ T+G F++KT+ G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHA----FSTSLAMPQ 137
R+ ++Y+ S +G+I V S + ++ ++ +L + + A F+ +P
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133
Query: 138 VRPC 141
C
Sbjct: 134 ALSC 137
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 68 YDRLRPLSYPDTDVILM 84
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V +GD VGKTC++ + S F T+ +FS V +DG+ V L +WDTAGQE
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68
Query: 82 RFRTITQSYYRSAN 95
+ + YR A+
Sbjct: 69 DYSRLRPLSYRGAD 82
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++ +F +G+ V+ T+G F++KT+ G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140
R+ ++Y+ S +G+I V S + ++ ++ +L + + A A Q P
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 11/133 (8%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++ +F +G+ ++ T+G F++KT ++ + KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLG--FNIKT--LEHRGFKLNIWDVGGQK 71
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPC 141
R+ ++Y+ S +G+I V S + ++ ++ +L + + A A Q P
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP- 130
Query: 142 LFHKFGHASSSAM 154
G SS+A+
Sbjct: 131 -----GALSSNAI 138
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 65 DYDRLRPLSYPQTDVSLI 82
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVSLI 80
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK-KVKLQIWDTAGQ 80
K+V++GD GKT + F F ++ TIG+DF ++ + + G V LQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 81 ERFRTITQSYYRSANGVII 99
+ Y A GV++
Sbjct: 67 TIGGKMLDKYIYGAQGVLL 85
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI D K V IDG+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 82 RFRTITQSYYRSANG 96
+ + Y R+ G
Sbjct: 63 EYSAMRDQYMRTGEG 77
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVSLI 80
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 67 DYDRLRPLSYPQTDVSLI 84
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI D K V IDG+ L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 82 RFRTITQSYYRSANG 96
+ + Y R+ G
Sbjct: 63 EYSAMRDQYMRTGEG 77
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+ ++G VGK+ + +F G FV+ TI F+ K + ++G++ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 83 FRTITQSYYRSANGVII--EVTSVE 105
+ Q+Y NG I+ VTS++
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIK 91
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+ ++G VGK+ + +F G FV+ TI F+ K + ++G++ LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 83 FRTITQSYYRSANGVII--EVTSVE 105
+ Q+Y NG I+ VTS++
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIK 89
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI D K V IDG+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 82 RFRTITQSYYRSANG 96
+ + Y R+ G
Sbjct: 64 EYSAMRDQYMRTGEG 78
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI D K V IDG+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 82 RFRTITQSYYRSANG 96
+ + Y R+ G
Sbjct: 64 EYSAMRDQYMRTGEG 78
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI D K V IDG+ L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 82 RFRTITQSYYRSANG 96
+ + Y R+ G
Sbjct: 63 EYSAMRDQYMRTGEG 77
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 64 DYDRLRPLSYPQTDVFLI 81
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI D K V IDG+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 82 RFRTITQSYYRSANG 96
+ + Y R+ G
Sbjct: 63 EYSAMRDQYMRTGEG 77
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 82 RFRTITQSYYRSANG 96
+ + Y G
Sbjct: 65 DYDRLRPLSYPQTVG 79
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 72
Query: 82 RF 83
+
Sbjct: 73 DY 74
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 64 DYDRLRPLSYPQTDVFLI 81
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 82 DYDRLRPLSYPQTDVFLI 99
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 90 DYDRLRPLSYPQTDVFLI 107
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+ ++G VGK+ + +F G FV+ TI F+ K + ++G++ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 83 FRTITQSYYRSANGVII--EVTSVE 105
+ Q+Y NG I+ VTS++
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIK 91
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F F T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 F 83
+
Sbjct: 66 Y 66
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
+ +++++G GKT ++ +F +G+ V+ T+G F++KT ++ + KL IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLG--FNIKT--LEHRGFKLNIWDVGGL 55
Query: 81 ERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHA----FSTSLAMP 136
+ R+ ++Y+ S +G+I V S + ++ ++ +L + + A F+ +P
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 115
Query: 137 QVRPC 141
C
Sbjct: 116 GALSC 120
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+ ++G VGK+ + +F G FV+ TI F+ K + ++G++ LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 83 FRTITQSYYRSANGVII--EVTSVE 105
+ Q+Y NG I+ VTS++
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIK 86
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D++ L K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAG E + + Y + +I
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLI 232
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D++ L K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 75 WDTAGQERF 83
WDTAG E +
Sbjct: 208 WDTAGLEDY 216
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D++ L K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGL 207
Query: 75 WDTAGQERF 83
WDTAG E +
Sbjct: 208 WDTAGLEDY 216
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + +F G FV++ TI D K V +D ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 82 RFRTITQSYYRSANG 96
+F + Y ++ G
Sbjct: 63 QFTAMRDLYMKNGQG 77
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT +++R + G+ V T TIG F+++TV K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGQT 57
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
R + YY + + VI V S
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDS 79
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 66 YDRLRPLSYPDTDVILM 82
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 64 YDRLRPLSYPDTDVILM 80
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 64 YDRLRPLSYPDTDVILM 80
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 66 YDRLRPLSYPDTDVILM 82
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 66 YDRLRPLSYPDTDVILM 82
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F E T+ ++ + + +DGK+V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 66 YDRLRPLSYPDTDVILM 82
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +D K V L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 68
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 69 DYDRLRPLSYPQTDVFLI 86
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT +++R + G+ V T TIG F+++T++ K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG--FNVETLSY--KNLKLNVWDLGGQT 73
Query: 82 RFRTITQSYYRSANGVIIEVTSVE 105
R + YY VI V S +
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTD 97
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 90 DYDRLRPLSYPQTDVFLI 107
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGK C++ + + F + T+ ++S V +DGK V L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 69
Query: 82 RF 83
+
Sbjct: 70 DY 71
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +D K V L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 69
Query: 82 RF 83
+
Sbjct: 70 DY 71
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQD 220
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
+ R + + Y+++ G+I V S
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDS 242
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T T+G F+++TV K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGQD 377
Query: 82 RFRTITQSYYRSANGVIIEV 101
+ R + + YY G+I V
Sbjct: 378 KIRPLWRHYYTGTQGLIFVV 397
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 63 DYDRLRPLSYPQTDVFLI 80
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 66 DYDRLRPLSYPQTDVFLI 83
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV K + +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQD 75
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
+ R + + Y+++ G+I V S
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDS 97
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV + K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETV--EYKNISFTVWDVGGQD 55
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
+ R + + Y+++ G+I V S
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDS 77
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
+ K V++GD VGKTC++ + + F E+ T+ D +V + GK+ L ++DTAG
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 80 QERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKY 123
QE + + Y + +I + V +N ++ V +Y
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY 119
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 33 GKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92
GKT ++ +F +G+ V+ T+G F++KT+ G KL IWD GQ+ R+ ++Y+
Sbjct: 30 GKTTILKKF-NGEDVDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 93 SANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140
S +G+I V S + ++ ++ +L + + A A Q P
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S V +DGK V L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 89
Query: 82 RFRTITQSYYRSANGVII 99
+ + Y + +I
Sbjct: 90 DYDRLRPLSYPQTDVFLI 107
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV + K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETV--EYKNISFTVWDVGGQD 72
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
+ R + + Y+++ G+I V S
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDS 94
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV + K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETV--EYKNICFTVWDVGGQD 72
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
R R + + Y+++ G+I V S
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDS 94
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV + K + +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETV--EYKNISFTVWDVGGQD 71
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
+ R + + Y+++ G+I V S
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDS 93
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
++ L+G GKT V+ SG F E T+G F+M+ V V ++IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVT--KGNVTIKIWDIGGQP 78
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDK 122
RFR++ + Y R N ++ + + + + L DK
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK 119
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT V+++ + G+ + T TIG F+++ V + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIG--FNVECVQY--CNISFTVWDVGGQD 72
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
R R++ + YY + GVI V S
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDS 94
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
+ R + + YY++ +I V S
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDS 94
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++++G GKT ++++ + G+ V T TIG F+++TV + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVV-TTIPTIG--FNVETVEF--RNISFTVWDVGGQDK 73
Query: 83 FRTITQSYYRSANGVIIEVTS 103
R + + YY + +G+I V S
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDS 94
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 12 TFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVK 71
+ D + + K+V++GD GKT ++H F F E T+ +++ + ID ++++
Sbjct: 14 SIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIE 72
Query: 72 LQIWDTAGQERFRTITQSYYRSANGVII 99
L +WDT+G + + Y ++ V+I
Sbjct: 73 LSLWDTSGSPYYDNVRPLSYPDSDAVLI 100
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K VL+GD VGKT +V + + + + T +FS V++DG+ V+LQ+ DTAGQ+
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQD 79
Query: 82 RFRTITQSYYRSAN 95
F + Y + +
Sbjct: 80 EFDKLRPLCYTNTD 93
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKTC++ F E T+ ++ + + +DGK+V+L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 83 FRTITQSYYRSANGVII 99
+ + Y + +++
Sbjct: 69 YDRLRPLSYPDTDVILM 85
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D + + K+V++GD GKT ++H F F E T+ +++ + ID ++++L +
Sbjct: 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSL 80
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDT+G + + Y ++ V+I
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLI 105
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFS--MKTVNIDGKKVKLQIWDTAG 79
K+V++GD VGKTC++ F G+ T+ +FS MK N ++ L +WDTAG
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN---EEFILHLWDTAG 80
Query: 80 QERFRTITQSYYRSANGVII 99
QE + + Y ++ V++
Sbjct: 81 QEEYDRLRPLSYADSDVVLL 100
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNICFTVWDVGGQD 84
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
+ R + + Y+++ G+I V S
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDS 106
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT +++R + G+ V T TIG F+++TV K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGLT 59
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
R + YY + + VI V S
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDS 81
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T T+G F+++TV K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGQD 55
Query: 82 RFRTITQSYYRSANGVIIEV 101
+ R + + YY G+I V
Sbjct: 56 KIRPLWRHYYTGTQGLIFVV 75
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T T+G F+++TV K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGQD 55
Query: 82 RFRTITQSYYRSANGVIIEV 101
+ R + + YY G+I V
Sbjct: 56 KIRPLWRHYYTGTQGLIFVV 75
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKT ++H F F E T+ +++ + ID ++++L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67
Query: 83 FRTITQSYYRSANGVII 99
+ + Y ++ V+I
Sbjct: 68 YDNVRPLSYPDSDAVLI 84
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFS--MKTVNIDGKKVKLQIWDTAG 79
K+V++GD VGKTC++ F G+ T+ +FS MK N ++ L +WDTAG
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN---EEFILHLWDTAG 79
Query: 80 QERFRTITQSYYRSANGVII 99
QE + + Y ++ V++
Sbjct: 80 QEEYDRLRPLSYADSDVVLL 99
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T T+G F+++TV K VK +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY--KNVKFNVWDVGGQD 68
Query: 82 RFRTITQSYYRSANGVIIEV 101
+ R + + YY G+I V
Sbjct: 69 KIRPLWRHYYTGTQGLIFVV 88
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T T+G F+++TV K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY--KNVKFNVWDVGGQD 67
Query: 82 RFRTITQSYYRSANGVIIEV 101
+ R + + YY G+I V
Sbjct: 68 KIRPLWRHYYTGTQGLIFVV 87
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++++G G GKT +++R + G+ V T TIG F+++TV K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63
Query: 83 FRTITQSYYRSANGVIIEVTS 103
R + YY + + VI V S
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDS 84
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
KVV++G VGKT + H+F G+F E T+ +S K V + + L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 83 FRTITQSYYRSANGVII--EVTS------VEYCYQR 110
+ + S+ +G ++ VTS +E YQ+
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQK 120
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G+ V T TIG F+++TV + K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETV--EYKNISFTVWDVGGLD 57
Query: 82 RFRTITQSYYRSANGVIIEVTS 103
+ R + + Y+++ G+I V S
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDS 79
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
++ L+G GKT V+ SG F E T+G F+M+ I V +++WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMR--KITKGNVTIKLWDIGGQP 87
Query: 82 RFRTITQSYYRSANGVIIEVTSVE 105
RFR++ + Y R + ++ V + +
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAAD 111
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 34 KTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93
K+ + +F +G F+EK TI DF K + +D L+I DTAG E+F ++ Y ++
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 94 ANGVII 99
G I+
Sbjct: 75 GQGFIL 80
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++ +G GKT ++++ + G V T T+G F+++TV K VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 83 FRTITQSYYRSANGVIIEV 101
R + + YY G+I V
Sbjct: 57 IRPLWRHYYTGTQGLIFVV 75
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
KV+++G GKT ++++F + V T TIG + +N + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 83 FRTITQSYYRSANGVIIEVTSVE 105
R+ +YY + VI+ V S +
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTD 95
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
KV+++G GKT ++++F + V T TIG + +N + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 83 FRTITQSYYRSANGVIIEVTSVE 105
R+ +YY + VI+ V S +
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTD 95
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
KV+++G GKT ++++F + V T TIG + +N + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVIN----NTRFLMWDIGGQES 78
Query: 83 FRTITQSYYRSANGVIIEVTSVE 105
R+ +YY + VI+ V S +
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTD 101
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
KV+++G GKT ++++F + V T TIG + V K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVH-TSPTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 83 FRTITQSYYRSANGVIIEVTSVE 105
R+ +YY + +I+ V S++
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSID 95
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
++ L+G GKT V+ SG F E T+G F+M+ I V +++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMR--KITKGNVTIKLWDIGGQP 78
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDK 122
RFR++ + Y R + ++ V + + + L DK
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 119
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
KV+++G GKT ++++F + V T TIG + +N + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVIN----NTRFLMWDIGGQES 77
Query: 83 FRTITQSYYRSANGVIIEVTSVE 105
R+ +YY + VI+ V S +
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTD 100
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal
Domain Sopb In Complex With Cdc42
Length = 193
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 82 RF 83
+
Sbjct: 73 DY 74
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 82 RF 83
+
Sbjct: 65 DY 66
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 82 RF 83
+
Sbjct: 66 DY 67
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 82 RF 83
+
Sbjct: 66 DY 67
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 82 RF 83
+
Sbjct: 64 DY 65
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 82 RF 83
+
Sbjct: 70 DY 71
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
Length = 177
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T T+G F+++TV K VK +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGLD 57
Query: 82 RFRTITQSYYRSANGVIIEV 101
+ R + + YY G+I V
Sbjct: 58 KIRPLWRHYYTGTQGLIFVV 77
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T T+G F+++TV K VK +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY--KNVKFNVWDVGGLD 58
Query: 82 RFRTITQSYYRSANGVIIEV 101
+ R + + YY G+I V
Sbjct: 59 KIRPLWRHYYTGTQGLIFVV 78
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 66
Query: 82 RF 83
+
Sbjct: 67 DY 68
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
Length = 180
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 82 RF 83
+
Sbjct: 65 DY 66
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V T T+G F+++TV K VK +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTY--KNVKFNVWDVGGLD 68
Query: 82 RFRTITQSYYRSANGVIIEV 101
+ R + + YY G+I V
Sbjct: 69 KIRPLWRHYYTGTQGLIFVV 88
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In
Complex With Cdc42 (T17n Mutant)
Length = 195
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGK C++ + + F + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 82 RF 83
+
Sbjct: 70 DY 71
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + + ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + + T+ ++++ TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L++VVL+GD GVGKT + F +G +G D +T+ +DG+ L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLF-AGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 81 ERF 83
E+
Sbjct: 63 EKL 65
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 62
Query: 82 RF 83
+
Sbjct: 63 DY 64
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein,
Rras, In The Gdp- Bound State
Length = 181
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 34 KTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93
K+ + +F FV TI D K ++DG +L I DTAGQE F + + Y R+
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 94 ANGVII 99
+G ++
Sbjct: 81 GHGFLL 86
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FVEK TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVEKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++++ TV I G+ L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 82 RF 83
+
Sbjct: 67 DY 68
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+VL+GD GKT ++ + E T+ +++ + + ++V+L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 71
Query: 83 FRTITQSYYRSANGVII 99
+ + Y ++ V++
Sbjct: 72 YDNVRPLCYSDSDAVLL 88
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+VL+GD GKT ++ + E T+ +++ + + ++V+L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 70
Query: 83 FRTITQSYYRSANGVII 99
+ + Y ++ V++
Sbjct: 71 YDNVRPLCYSDSDAVLL 87
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+VL+GD GKT ++ + E T+ +++ + + ++V+L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 87
Query: 83 FRTITQSYYRSANGVII 99
+ + Y ++ V++
Sbjct: 88 YDNVRPLCYSDSDAVLL 104
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 34 KTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93
K+ + +F FV+ TI D +K ID + L + DTAGQE F + + Y R+
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 94 ANGVII 99
+G +I
Sbjct: 90 GDGFLI 95
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D +++L+G GKT ++ + S D T F++K+V G KL +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ---GFNIKSVQSQG--FKLNVWDIG 68
Query: 79 GQERFRTITQSYYRSANGVIIEVTSVE 105
GQ + R +SY+ + + +I + S +
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSAD 95
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D +++L+G GKT ++ + S D T F++K+V G KL +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ---GFNIKSVQSQG--FKLNVWDIG 69
Query: 79 GQERFRTITQSYYRSANGVIIEVTSVE 105
GQ + R +SY+ + + +I + S +
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSAD 96
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 34 KTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93
K+ + +F FV + TI D +K ID + L + DTAGQE F + + Y R+
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 94 ANGVII 99
+G +I
Sbjct: 90 GDGFLI 95
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed
With The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed
With The Ras-interacting Domain Of Ralgds
Length = 167
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV+K TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH
GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH
GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH
GP
Length = 183
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 34 KTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93
K+ + +F FV++ TI D K ID + L + DTAGQE F + + Y R+
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 94 ANGVII 99
+G +I
Sbjct: 90 GDGFLI 95
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++L+G GKT ++ + S D T F++K+V G KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQ---GFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 83 FRTITQSYYRSANGVIIEVTSVE 105
R +SY+ + + +I + S +
Sbjct: 61 IRPYWRSYFENTDILIYVIDSAD 83
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 34 KTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93
K+ + +F FV TI D +K ID + L + DTAGQE F + + Y R+
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 94 ANGVII 99
+G +I
Sbjct: 85 GDGFLI 90
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 23 KVVLIGDCGVGKTCVVHRFRS--GDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW--DTA 78
KV ++G+ VGK+ ++ F S F++ T GV+ + V I V ++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 79 GQERFRTITQSYYRSANGV-----IIEVTSVE 105
G + ++ Y+ NGV + +V+S+E
Sbjct: 82 GSDLYKEQISQYW---NGVYYAILVFDVSSME 110
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound
State
Length = 196
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKL 72
FQ + K+ + G GVGK+ +V RF + F+ + T+ + + ID + V +
Sbjct: 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSM 78
Query: 73 QIWDTAGQE 81
+I DTAGQE
Sbjct: 79 EILDTAGQE 87
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEG 77
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gdp
Length = 166
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant
In Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 33 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 82
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 33 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 82
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus
Des C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate
Conformation Of H-Ras P21 At 1.35 Angstroms Resolution:
Implications For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In
Calcium A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution:
One Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs
Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs
Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs
Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|1RVD|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By
The Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An
Oncogenic Mutant Complexed With Gsp
Length = 171
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An
Oncogenic Mutant Complexed With Gsp
Length = 171
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant
Of Ras
Length = 166
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of
H-Ras P21 In Complex With Gdp (2)
Length = 166
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 29 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 29 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With
Gdp
Length = 190
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 46 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI + K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
++V + G GVGK+ +V RF G F E T+ D + ++ D LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 82 RF 83
+F
Sbjct: 63 QF 64
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 34 KTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93
K+ + +F FV TI ++ + V ID + +L I DTAGQE F + + Y R+
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 94 ANG--VIIEVT---SVEYCYQRNWHKQAVTLFDKYKF 125
G ++ VT S E Y + +Q + + D+ +F
Sbjct: 77 GEGFLLVFSVTDRGSFEEIY--KFQRQILRVKDRDEF 111
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With
Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With
Hras
Length = 173
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 35 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 84
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEFDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNIDGKK---VKLQIWD 76
++VVLIG+ GVGK+ + + F +G D ++ +G D +T+ +DG+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIF-AGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 77 TAGQ 80
G+
Sbjct: 66 NKGE 69
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNIDGKK---VKLQIWD 76
++VVLIG+ GVGK+ + + F +G D ++ +G D +T+ +DG+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIF-AGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 77 TAGQ 80
G+
Sbjct: 66 NKGE 69
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 61 KTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 48 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 83
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 61 KTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
K V IDG+ L I DTAGQE + + Y R+ G
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 23 KVVLIGDCGVGKTCVVHRF---RSGDFVEKTGNTIGVDFSMKTVNIDGKKVK---LQIWD 76
K+ ++G+ G GKT ++ + + D ++ T+G+D + I K+ + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSA-TVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 77 TAGQERF 83
AG+E F
Sbjct: 63 FAGREEF 69
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 23 KVVLIGDCGVGKTCVVHRF---RSGDFVEKTGNTIGVDFSMKTVNIDGKKVK---LQIWD 76
K+ ++G+ G GKT ++ + + D ++ T+G+D + I K+ + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSA-TVGIDVKDWPIQIRDKRKRDLVLNVWD 60
Query: 77 TAGQERF 83
AG+E F
Sbjct: 61 FAGREEF 67
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 3 SSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRS-GDFVEKTGNTIGVDFSMK 61
S ++++ NT+ ++VVLIG+ GVGK+ + + F D ++ +G D +
Sbjct: 27 SVISSESGNTY--------YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYER 78
Query: 62 TVNIDGKK---VKLQIWDTAGQ 80
T+ +DG+ + L +W+ G+
Sbjct: 79 TLMVDGESATIILLDMWENKGE 100
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAG+E + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEG 77
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DT GQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEG 77
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DT GQE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEG 77
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++L+G GKT ++ + S D T F++K+V G KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQ---GFNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 83 FRTITQSYYRSANGVIIEVTSVE 105
R +SY+ + + +I + S +
Sbjct: 61 IRPYWRSYFENTDILIYVIDSAD 83
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAGQE + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEG 77
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D +V+++G GKT +++R GD V +++T+ K + ++WD
Sbjct: 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG---VNLETLQY--KNISFEVWDLG 74
Query: 79 GQERFRTITQSYYRSANGVIIEVTSVE 105
GQ R + Y+ + VI V S +
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTD 101
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
KV ++G+ GK+ +VHR+ +G +V++ G F K + +DG+ L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFK-KEIVVDGQSYLLLIRDEGG 76
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRS-GDFVEKTGNTIGVDFSMKTVNIDGKK---VKLQIWDT 77
++VVLIG+ GVGK+ + + F D ++ +G D +T+ +DG+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 78 AGQ 80
G+
Sbjct: 67 KGE 69
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAG E + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEG 77
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98
FV++ TI D K V IDG+ L I DTAG E + + Y R+ G +
Sbjct: 46 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFL 97
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTA QE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEG 77
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTA QE + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEG 77
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAG E + + Y R+ G
Sbjct: 33 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEG 82
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAG E + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEG 77
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAG E + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEG 77
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAG E + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEG 77
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound
Form
Length = 166
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAG E + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEG 77
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96
FV++ TI D K V IDG+ L I DTAG E + + Y R+ G
Sbjct: 28 FVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEG 77
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF---------VEKTGNTIGVDFSMKTVNIDGKKV 70
F F ++++G+ G+GK+ +++ D EK T+ ++ S + G K+
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 71 KLQIWDTAG 79
+L + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound
Gdp
Length = 195
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRS--GDFVEKTGNTIGVDFSMKTVNIDGK 68
N + D +FKV+L+G+ GVGK+ + F GD + N D + + +D +
Sbjct: 13 NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP--EDTYERRIMVDKE 70
Query: 69 KVKLQIWD 76
+V L ++D
Sbjct: 71 EVTLVVYD 78
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
Length = 180
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRS--GDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
D +FKV+L+G+ GVGK+ + F GD + N+ D + + +D ++V L ++D
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENS--EDTYERRIMVDKEEVTLIVYD 67
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+VV+ G GKT ++++ + K T V ++++T + +V ++D G +
Sbjct: 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKH-ITATVGYNVET--FEKGRVAFTVFDMGGAK 74
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYC 107
+FR + ++YY + + VI V S ++
Sbjct: 75 KFRGLWETYYDNIDAVIFVVDSSDHL 100
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF---------VEKTGNTIGVDFSMKTVNIDGKKV 70
F F ++++G+ G+GK+ +++ D EK T+ ++ S + G K+
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 71 KLQIWDTAG 79
+L + DT G
Sbjct: 64 RLTVVDTPG 72
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRS--GDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+FKV+L+G+ GVGK+ + F GD + N+ D + + +D ++V L ++D
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS--EDTYERRIMVDKEEVTLIVYD 57
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF---------VEKTGNTIGVDFSMKTVNIDGKKV 70
F F + ++G+ G+GK+ +++ D EK T+ ++ S + G K+
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 71 KLQIWDTAG 79
+L + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 25 VLIGDCGVGKTCVV----HRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
VLIG+ GVGKT +V R GD E V M ++ + G K + + +
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL-LAGAKYRGEF-----E 111
Query: 81 ERFRTITQSYYRSANGVII 99
ER + + Q +S VI+
Sbjct: 112 ERLKAVIQEVVQSQGEVIL 130
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTV-NIDG-------KKVKLQ 73
KV LIGD GKT ++ + F K T G++ K NI G K+
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 74 IWDTAGQE 81
WD GQE
Sbjct: 102 FWDFGGQE 109
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRF---RSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
S + ++KV+L+G GVGK+ + F G E G+T +++ +DG++ L
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLM 57
Query: 74 IWDTAGQERFR 84
++D Q+ R
Sbjct: 58 VYDIWEQDGGR 68
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF---------VEKTGNTIGVDFSMKTVNIDGKKV 70
F F + ++G+ G+GK+ +++ D EK T+ ++ S + G K+
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 71 KLQIWDTAG 79
+L + DT G
Sbjct: 77 RLTVVDTPG 85
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 114 KQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWPCLK 164
K A +L D + TS A + CL +G+ SS +P V CLK
Sbjct: 91 KSAASLXDSRVASISLPTSCASAGTQ-CLISGWGNTKSSGTSYPDVLKCLK 140
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRF---RSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
S + ++KV+L+G GVGK+ + F G E G+T +++ +DG++ L
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLM 57
Query: 74 IWDTAGQERFR 84
++D Q+ R
Sbjct: 58 VYDIWEQDGGR 68
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog
Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog
Complex
Length = 166
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 21 LFKVVLIGDCGVGKTCVVHRF---RSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
++KV+L+G GVGK+ + F G E G+T +++ +DG++ L ++D
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-----RSIVVDGEEASLMVYDI 56
Query: 78 AGQERFR 84
Q+ R
Sbjct: 57 WEQDGGR 63
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 24 VVLIGDCGVGKTCVVHRFR-SGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
V+ +G GKT ++++ + S + TIG FS++ + ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIE--KFKSSSLSFTVFDMSGQGR 79
Query: 83 FRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGH 127
+R + + YY+ +I + S + ++ TL + H
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH 124
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 25 VLIGDCGVGKTCVV----HRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
VLIG+ GVGKT +V R GD E V M ++ + G K + + +
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL-LAGAKYRGEF-----E 248
Query: 81 ERFRTITQSYYRSANGVII 99
ER + + Q +S VI+
Sbjct: 249 ERLKAVIQEVVQSQGEVIL 267
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
++ ++GD GK+ ++HRF +G + +EKT + + K + +DG+ + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES----EQYKKEMLVDGQTHLVLIREEAG 63
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
++ ++GD GK+ ++HRF +G + +EKT + + K + +DG+ + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES----EQYKKEMLVDGQTHLVLIREEAG 63
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
V ++G GKT ++ R E+ I V ++ KK+ DT G E F
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITF--LDTPGHEAF 68
Query: 84 RTITQSYYRSANGVIIEVTS 103
T+ + + VI+ V +
Sbjct: 69 TTMRARGAQVTDIVILVVAA 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,748,928
Number of Sequences: 62578
Number of extensions: 254264
Number of successful extensions: 1324
Number of sequences better than 100.0: 354
Number of HSP's better than 100.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 356
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)