BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5781
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28IZ3|RAB19_XENTR Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2
SV=1
Length = 213
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 77/89 (86%)
Query: 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKV 70
N+ +DD +DFLFK++LIGD VGKTCVVHRF+SG F NTIGVDF+++ +NI+GKKV
Sbjct: 5 NSLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKV 64
Query: 71 KLQIWDTAGQERFRTITQSYYRSANGVII 99
K+Q+WDTAGQERFRTITQSYYRSA+G II
Sbjct: 65 KVQVWDTAGQERFRTITQSYYRSAHGAII 93
>sp|Q32NQ0|RAB19_XENLA Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1
Length = 213
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 79/88 (89%)
Query: 12 TFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVK 71
+ +DD +DFLFK++LIGD VGKTCVVHRF+SG F++ NTIGVDF+++++NI+GKKVK
Sbjct: 6 SLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVK 65
Query: 72 LQIWDTAGQERFRTITQSYYRSANGVII 99
+Q+WDTAGQERFRTITQSYYRSA+G II
Sbjct: 66 VQVWDTAGQERFRTITQSYYRSAHGAII 93
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2
SV=1
Length = 210
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 75/86 (87%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
QD+ YDFLFK+VL+GD VGKTCVV RF++G F + G+TIGVDF+MKT+ I GK+VKLQ
Sbjct: 9 QDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQ 68
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAGQERFRTITQSYYRSANG I+
Sbjct: 69 IWDTAGQERFRTITQSYYRSANGAIL 94
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 75/86 (87%)
Query: 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQ 73
QD+ YDFLFK+VL+GD VGKTCVV RF++G F + G+TIGVDF+MKT+ I GK+VKLQ
Sbjct: 9 QDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQ 68
Query: 74 IWDTAGQERFRTITQSYYRSANGVII 99
IWDTAGQERFRTITQSYYRSANG I+
Sbjct: 69 IWDTAGQERFRTITQSYYRSANGAIL 94
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 74/84 (88%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ YDFLFK+VL+GD VGKTCVV RF++G F E+ G+TIGVDF+MKT+ I GK+VKLQIW
Sbjct: 13 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 72
Query: 76 DTAGQERFRTITQSYYRSANGVII 99
DTAGQERFRTITQSYYRSANG I+
Sbjct: 73 DTAGQERFRTITQSYYRSANGAIL 96
>sp|A4D1S5|RAB19_HUMAN Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2
Length = 217
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 74/85 (87%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D+++D+LFK++LIGD VGKTCVV F+SG + E NTIGVDF++++++IDGKKVK+Q+
Sbjct: 11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQV 70
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTITQSYYRSA+ II
Sbjct: 71 WDTAGQERFRTITQSYYRSAHAAII 95
>sp|Q3ZC27|RAB19_BOVIN Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1
Length = 217
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 73/85 (85%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D+++D+LFK++LIGD VGKTCVV F+SG ++E NTIGVDF+++ + IDGKKVK+Q+
Sbjct: 11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQV 70
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTITQSYYRSA+ II
Sbjct: 71 WDTAGQERFRTITQSYYRSAHAAII 95
>sp|P35294|RAB19_MOUSE Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3
Length = 217
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 72/85 (84%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D++ D+LFKV+LIGD VGKTCVV F+SG + E NTIGVDF+++++ IDGKKVK+Q+
Sbjct: 11 DENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQV 70
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTITQSYYRSA+ II
Sbjct: 71 WDTAGQERFRTITQSYYRSAHAAII 95
>sp|Q5M7U5|RAB19_RAT Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2
SV=1
Length = 217
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 72/85 (84%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D++ D+LFKV+LIGD VGKTCVV F+SG + E NTIGVDF+++++ IDGKKVK+Q+
Sbjct: 11 DENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQV 70
Query: 75 WDTAGQERFRTITQSYYRSANGVII 99
WDTAGQERFRTITQSYYRSA+ II
Sbjct: 71 WDTAGQERFRTITQSYYRSAHAAII 95
>sp|Q923S9|RAB30_MOUSE Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1
Length = 203
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 70/84 (83%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ YDFLFK+VLIG+ GVGKTC+V RF G F G TIGVDF +KTV I+G+KVKLQIW
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 76 DTAGQERFRTITQSYYRSANGVII 99
DTAGQERFR+ITQSYYRSAN +I+
Sbjct: 64 DTAGQERFRSITQSYYRSANALIL 87
>sp|Q15771|RAB30_HUMAN Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2
Length = 203
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 70/84 (83%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ YDFLFK+VLIG+ GVGKTC+V RF G F G TIGVDF +KTV I+G+KVKLQIW
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 76 DTAGQERFRTITQSYYRSANGVII 99
DTAGQERFR+ITQSYYRSAN +I+
Sbjct: 64 DTAGQERFRSITQSYYRSANALIL 87
>sp|Q17QB7|RAB30_BOVIN Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1
Length = 203
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 70/84 (83%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ YDFLFK+VLIG+ GVGKTC+V RF G F G TIGVDF +KTV I+G+KVKLQIW
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 76 DTAGQERFRTITQSYYRSANGVII 99
DTAGQERFR+ITQSYYRSAN +I+
Sbjct: 64 DTAGQERFRSITQSYYRSANALIL 87
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 79/108 (73%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF +VE +TIGVDF ++TV DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+II +VT E N KQ ++ D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIIVYDVTDEESF---NNVKQWLSEIDRY 109
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 79/109 (72%), Gaps = 7/109 (6%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E Y + W ++ D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE----IDRY 109
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 79/109 (72%), Gaps = 7/109 (6%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E Y + W ++ D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE----IDRY 109
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 79/109 (72%), Gaps = 7/109 (6%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E Y + W ++ D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE----IDRY 109
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 79/109 (72%), Gaps = 7/109 (6%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E Y + W ++ D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE----IDRY 109
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 79/109 (72%), Gaps = 7/109 (6%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E Y + W ++ D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQE----IDRY 109
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1
Length = 201
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 79/109 (72%), Gaps = 7/109 (6%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKY 123
AGQERFRT+T SYYR A+G+I+ +VT E Y + W ++ D+Y
Sbjct: 65 AGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQE----IDRY 109
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++TV +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNEIDRY 109
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 112
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++TV +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLAEIDRY 109
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF ++E +TIGVDF ++TV DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLNEIDRY 109
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 120 bits (300), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 79/108 (73%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF +++ +TIGVDF ++TV DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT +E N KQ + D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVTYDVTDLE---SFNNVKQWLNEIDRY 109
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 120 bits (300), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 77/101 (76%), Gaps = 3/101 (2%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+N+DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTS-VEYCYQRNWHKQ 115
AGQERFRTIT SYYR A+G+I+ +VT V + + W ++
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQE 105
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF +++ +TIGVDF ++TV DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+II +VT E N KQ + D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESF---NNVKQWLNEIDRY 109
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 79/108 (73%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF +++ +TIGVDF ++TV DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT +E N KQ + D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVTYDVTDLE---SFNNVKQWLNEIDRY 109
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 112
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 112
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 112
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 112
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G+I+ +VT E N KQ + D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFNNVKQWLQEIDRY 109
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1
PE=3 SV=1
Length = 201
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE 105
TAGQERFRTIT SYYR A+G+I+ +VT E
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQE 94
>sp|P36862|YPTV3_VOLCA GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1
Length = 203
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
DS+D+ FKV+L+GD GVGK+C++ RF SG F E T +TIGVDF +K + DGK+ KL IW
Sbjct: 4 DSHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIW 63
Query: 76 DTAGQERFRTITQSYYRSANGVII--EVTSVEY--CYQRNWHKQAVTLFDKY-------K 124
DTAGQERFRT+T SYYR A G+I +VT + + NW ++ FD Y K
Sbjct: 64 DTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMRE----FDIYSTVESAIK 119
Query: 125 FGHAFSTSL-AMPQVRPCLFHKFGHASSSAMPFPQVWPCLKFGHAFSTSLAMPQVRPCLF 183
A L A QV H F L G AF L P L
Sbjct: 120 MVVANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLL 179
Query: 184 H--KFGHASSSAMPFPQ 198
G A+P Q
Sbjct: 180 ETTAVGGIKLGAVPTGQ 196
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 67/82 (81%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQERFRTIT SYYR A+G+I+
Sbjct: 68 AGQERFRTITSSYYRGAHGIIV 89
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 78/109 (71%), Gaps = 7/109 (6%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK +KLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNWHKQAVTLFDKY 123
AGQER RTIT SYYR A+G+I+ +VT E Y + W ++ D+Y
Sbjct: 65 AGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE----IDRY 109
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ypt-1
PE=3 SV=1
Length = 203
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T+ +DGK VKLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANG--VIIEVTSVEYCYQRNWHKQAVTLFDKY 123
AGQERFRTIT SYYR A+G V+ +VT ++ N KQ + D+Y
Sbjct: 65 AGQERFRTITSSYYRGAHGICVVYDVTDMD---SFNNVKQWLQEIDRY 109
>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1
Length = 207
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNW 112
TAGQERFRTIT +YYR A G+++ ++T+ + + RNW
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2
Length = 207
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNW 112
TAGQERFRTIT +YYR A G+++ ++T+ + + RNW
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2
Length = 207
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNW 112
TAGQERFRTIT +YYR A G+++ ++T+ + + RNW
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 5/110 (4%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
+ +D+LFK++LIGD VGK+C + RF +V+ +TIGVDF ++TV ++GK VKLQIW
Sbjct: 3 NEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIW 62
Query: 76 DTAGQERFRTITQSYYRSANGVII--EVTSVEYCYQRNWHKQAVTLFDKY 123
DTAGQERFRTIT SYYR A+G+II ++T +E N KQ + D+Y
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIIVYDITDMESF---NNVKQWLDEIDRY 109
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNW 112
TAGQERFRTIT +YYR A G+++ ++T+ + + RNW
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNW 112
TAGQERFRTIT +YYR A G+++ ++T+ + + RNW
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNW 112
TAGQERFRTIT +YYR A G+++ ++T+ + + RNW
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVII--EVTSVE-YCYQRNW 112
TAGQERFRTIT +YYR A G+++ ++T+ + + RNW
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 66/82 (80%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIGD GVGK+C++ RF + E +TIGVDF ++T ++GK VKLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII 99
AGQERFRTIT SYYR A+G+II
Sbjct: 65 AGQERFRTITSSYYRGAHGIII 86
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 70/90 (77%), Gaps = 2/90 (2%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIG+ GVGK+C++ RF + +TIGVDF +KTV +DGK VKLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 78 AGQERFRTITQSYYRSANGVII--EVTSVE 105
AGQERFRTIT SYYR ++G+II +VT E
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQE 94
>sp|P22128|RAB8_DIPOM Ras-related protein Rab-8 OS=Diplobatis ommata PE=2 SV=1
Length = 210
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 66/82 (80%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTC++ RF F +TIG+DF ++TV +DGKK+KLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWD 63
Query: 77 TAGQERFRTITQSYYRSANGVI 98
TAGQERFRTIT +YYR A G++
Sbjct: 64 TAGQERFRTITTAYYRGAMGIM 85
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 72/98 (73%), Gaps = 3/98 (3%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+L K++LIGD GVGK+C++ RF G F TIG+DF ++T+ +DGK++KLQIWDT
Sbjct: 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
Query: 78 AGQERFRTITQSYYRSANGVII--EVT-SVEYCYQRNW 112
AGQERFRTIT +YYR A G+++ +VT + RNW
Sbjct: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 73/101 (72%), Gaps = 3/101 (2%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+L K++LIGD GVGK+C++ RF G F TIG+DF ++T+ +DGK++KLQIWDT
Sbjct: 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
Query: 78 AGQERFRTITQSYYRSANGVII--EVT-SVEYCYQRNWHKQ 115
AGQERFRTIT +YYR A G+++ +VT + RNW +
Sbjct: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,284,384
Number of Sequences: 539616
Number of extensions: 3146222
Number of successful extensions: 11516
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 10141
Number of HSP's gapped (non-prelim): 1089
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)