Query psy5781
Match_columns 231
No_of_seqs 219 out of 1883
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:49:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.5E-37 3.3E-42 245.4 13.9 160 14-173 2-168 (205)
2 KOG0078|consensus 100.0 5.3E-34 1.2E-38 228.1 14.8 159 16-174 7-171 (207)
3 KOG0094|consensus 100.0 4E-34 8.7E-39 225.5 13.5 157 17-173 18-181 (221)
4 KOG0092|consensus 100.0 2.9E-33 6.3E-38 220.4 13.4 155 19-173 3-163 (200)
5 KOG0087|consensus 100.0 5.9E-33 1.3E-37 221.5 13.4 161 13-173 6-172 (222)
6 KOG0098|consensus 100.0 2.1E-32 4.7E-37 214.2 13.7 157 17-173 2-164 (216)
7 KOG0080|consensus 100.0 1.2E-31 2.5E-36 205.4 13.7 158 16-173 6-170 (209)
8 KOG0095|consensus 100.0 1E-31 2.2E-36 203.6 11.8 159 15-173 1-165 (213)
9 KOG0079|consensus 100.0 2.3E-31 5E-36 201.3 10.0 156 16-172 3-164 (198)
10 KOG0394|consensus 100.0 1.2E-30 2.6E-35 204.0 12.0 157 17-173 5-174 (210)
11 KOG0086|consensus 100.0 1.5E-30 3.3E-35 197.9 11.1 160 14-173 2-167 (214)
12 KOG0093|consensus 100.0 4.8E-29 1E-33 188.5 13.0 161 13-173 13-179 (193)
13 KOG0091|consensus 100.0 7.8E-30 1.7E-34 195.9 8.2 155 19-173 6-169 (213)
14 cd04121 Rab40 Rab40 subfamily. 100.0 1.3E-28 2.9E-33 199.5 15.8 155 18-173 3-163 (189)
15 cd04120 Rab12 Rab12 subfamily. 100.0 1.4E-28 3.1E-33 201.2 15.1 152 22-173 1-159 (202)
16 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.3E-28 1.8E-32 193.7 15.2 154 18-173 2-176 (182)
17 cd04133 Rop_like Rop subfamily 100.0 8.9E-28 1.9E-32 192.5 14.8 150 22-173 2-169 (176)
18 cd04122 Rab14 Rab14 subfamily. 99.9 6.2E-27 1.4E-31 184.9 15.2 153 21-173 2-160 (166)
19 cd04131 Rnd Rnd subfamily. Th 99.9 5.3E-27 1.2E-31 188.3 14.9 151 21-173 1-172 (178)
20 cd04128 Spg1 Spg1p. Spg1p (se 99.9 5.6E-27 1.2E-31 188.8 14.3 151 22-173 1-162 (182)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 9.7E-27 2.1E-31 193.9 15.9 154 18-173 10-184 (232)
22 cd01875 RhoG RhoG subfamily. 99.9 1.1E-26 2.3E-31 188.4 15.2 151 21-173 3-173 (191)
23 KOG0088|consensus 99.9 1E-27 2.3E-32 183.4 7.5 155 17-171 9-169 (218)
24 KOG0097|consensus 99.9 5.2E-27 1.1E-31 176.6 10.8 159 15-173 5-169 (215)
25 cd04117 Rab15 Rab15 subfamily. 99.9 3.2E-26 7E-31 180.3 15.4 152 22-173 1-158 (161)
26 cd01867 Rab8_Rab10_Rab13_like 99.9 4.3E-26 9.3E-31 180.4 14.8 155 19-173 1-161 (167)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 4.4E-26 9.6E-31 181.7 14.3 152 21-173 2-160 (172)
28 PF00071 Ras: Ras family; Int 99.9 4.3E-26 9.3E-31 178.8 14.0 151 23-173 1-157 (162)
29 KOG0081|consensus 99.9 1.4E-28 3E-33 188.3 -0.3 171 15-185 3-191 (219)
30 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 5.3E-26 1.1E-30 181.0 14.0 152 23-174 2-162 (170)
31 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 8.3E-26 1.8E-30 184.4 15.4 152 22-173 1-164 (201)
32 cd01874 Cdc42 Cdc42 subfamily. 99.9 7.9E-26 1.7E-30 180.8 14.7 151 21-173 1-171 (175)
33 PLN03071 GTP-binding nuclear p 99.9 1.1E-25 2.5E-30 186.3 16.0 153 19-173 11-168 (219)
34 cd01865 Rab3 Rab3 subfamily. 99.9 1.3E-25 2.9E-30 177.2 15.5 152 22-173 2-159 (165)
35 KOG0083|consensus 99.9 1.5E-27 3.3E-32 177.8 3.9 149 25-173 1-156 (192)
36 cd04127 Rab27A Rab27a subfamil 99.9 2.1E-25 4.6E-30 178.1 15.1 155 19-173 2-173 (180)
37 PLN03110 Rab GTPase; Provision 99.9 2.6E-25 5.6E-30 183.7 16.1 157 17-173 8-170 (216)
38 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.8E-25 4E-30 182.7 14.4 119 22-140 1-146 (202)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 3.6E-25 7.9E-30 174.5 15.1 153 21-173 2-160 (166)
40 cd04119 RJL RJL (RabJ-Like) su 99.9 3.7E-25 8E-30 173.7 14.9 152 22-173 1-163 (168)
41 cd00877 Ran Ran (Ras-related n 99.9 4.3E-25 9.2E-30 174.9 15.0 150 22-173 1-155 (166)
42 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 3.1E-25 6.6E-30 183.9 14.8 150 22-173 2-172 (222)
43 cd04109 Rab28 Rab28 subfamily. 99.9 3.9E-25 8.5E-30 182.4 15.2 152 22-173 1-162 (215)
44 cd04125 RabA_like RabA-like su 99.9 5.8E-25 1.2E-29 177.3 15.6 152 22-173 1-158 (188)
45 cd01868 Rab11_like Rab11-like. 99.9 5.6E-25 1.2E-29 173.1 15.2 154 20-173 2-161 (165)
46 cd04111 Rab39 Rab39 subfamily. 99.9 4E-25 8.8E-30 182.0 14.7 178 20-206 1-186 (211)
47 cd01864 Rab19 Rab19 subfamily. 99.9 8.8E-25 1.9E-29 172.2 15.3 155 19-173 1-162 (165)
48 cd04110 Rab35 Rab35 subfamily. 99.9 8.7E-25 1.9E-29 178.2 15.6 155 18-173 3-163 (199)
49 cd04136 Rap_like Rap-like subf 99.9 6.1E-25 1.3E-29 172.1 14.1 152 21-173 1-159 (163)
50 cd04116 Rab9 Rab9 subfamily. 99.9 1.4E-24 3.1E-29 171.7 15.9 155 18-173 2-167 (170)
51 cd01866 Rab2 Rab2 subfamily. 99.9 1.2E-24 2.7E-29 172.2 15.5 154 19-172 2-161 (168)
52 cd01871 Rac1_like Rac1-like su 99.9 8.5E-25 1.8E-29 174.7 14.6 150 22-173 2-171 (174)
53 cd04176 Rap2 Rap2 subgroup. T 99.9 7.2E-25 1.6E-29 172.1 14.0 152 21-173 1-159 (163)
54 smart00176 RAN Ran (Ras-relate 99.9 8E-25 1.7E-29 178.8 13.7 145 27-173 1-150 (200)
55 PLN03108 Rab family protein; P 99.9 2E-24 4.4E-29 177.6 15.6 156 18-173 3-164 (210)
56 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.8E-24 4E-29 168.7 14.3 152 21-173 1-158 (162)
57 cd04175 Rap1 Rap1 subgroup. T 99.9 1.4E-24 3.1E-29 170.8 13.7 152 21-173 1-159 (164)
58 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.5E-24 5.5E-29 170.8 15.1 153 21-173 2-165 (170)
59 cd04143 Rhes_like Rhes_like su 99.9 1.8E-24 3.8E-29 182.2 14.9 152 22-174 1-168 (247)
60 cd04106 Rab23_lke Rab23-like s 99.9 2.5E-24 5.5E-29 168.6 14.6 151 22-173 1-159 (162)
61 cd04113 Rab4 Rab4 subfamily. 99.9 2.8E-24 6E-29 168.5 14.8 152 22-173 1-158 (161)
62 cd04144 Ras2 Ras2 subfamily. 99.9 1.1E-24 2.4E-29 176.2 12.8 150 23-173 1-159 (190)
63 PTZ00369 Ras-like protein; Pro 99.9 2.5E-24 5.4E-29 174.0 14.3 153 20-173 4-163 (189)
64 cd04124 RabL2 RabL2 subfamily. 99.9 2.7E-24 5.9E-29 169.2 14.1 149 22-173 1-154 (161)
65 PLN00023 GTP-binding protein; 99.9 3E-24 6.5E-29 185.0 14.9 124 15-138 15-166 (334)
66 cd04112 Rab26 Rab26 subfamily. 99.9 3.8E-24 8.1E-29 173.2 14.6 152 22-173 1-159 (191)
67 cd04134 Rho3 Rho3 subfamily. 99.9 3.6E-24 7.8E-29 173.1 14.1 149 23-173 2-170 (189)
68 cd01873 RhoBTB RhoBTB subfamil 99.9 3.9E-24 8.4E-29 174.1 14.3 150 21-173 2-192 (195)
69 cd01892 Miro2 Miro2 subfamily. 99.9 6.8E-24 1.5E-28 168.6 14.6 154 18-173 1-162 (169)
70 KOG0395|consensus 99.9 1.9E-24 4.1E-29 175.8 11.3 158 20-178 2-166 (196)
71 cd04126 Rab20 Rab20 subfamily. 99.9 7.6E-24 1.6E-28 175.4 14.3 111 22-137 1-114 (220)
72 cd04140 ARHI_like ARHI subfami 99.9 1.3E-23 2.8E-28 165.8 14.8 152 22-174 2-162 (165)
73 cd04142 RRP22 RRP22 subfamily. 99.9 1.1E-23 2.4E-28 171.9 14.4 152 22-173 1-170 (198)
74 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.6E-23 3.5E-28 164.5 14.8 151 22-173 1-160 (164)
75 smart00173 RAS Ras subfamily o 99.9 1.4E-23 2.9E-28 164.9 13.7 151 22-173 1-158 (164)
76 cd01861 Rab6 Rab6 subfamily. 99.9 2.4E-23 5.3E-28 162.8 15.0 151 22-172 1-157 (161)
77 cd04103 Centaurin_gamma Centau 99.9 1.8E-23 4E-28 164.6 13.7 145 22-173 1-155 (158)
78 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3.2E-23 6.9E-28 162.5 14.9 152 21-173 2-160 (164)
79 KOG0393|consensus 99.9 1.8E-24 3.9E-29 173.7 7.7 118 19-138 2-124 (198)
80 cd04130 Wrch_1 Wrch-1 subfamil 99.9 3.7E-23 8E-28 164.5 14.7 149 22-172 1-169 (173)
81 smart00175 RAB Rab subfamily o 99.9 5.1E-23 1.1E-27 161.2 15.0 152 22-173 1-158 (164)
82 cd04118 Rab24 Rab24 subfamily. 99.9 5.1E-23 1.1E-27 166.4 15.3 151 22-173 1-162 (193)
83 cd01860 Rab5_related Rab5-rela 99.9 5.5E-23 1.2E-27 161.1 15.0 153 21-173 1-159 (163)
84 cd04132 Rho4_like Rho4-like su 99.9 3.9E-23 8.4E-28 166.2 14.1 150 22-173 1-163 (187)
85 PLN03118 Rab family protein; P 99.9 9E-23 1.9E-27 167.7 16.2 158 15-173 8-173 (211)
86 smart00174 RHO Rho (Ras homolo 99.9 5.5E-23 1.2E-27 163.1 14.0 148 24-173 1-168 (174)
87 cd04114 Rab30 Rab30 subfamily. 99.9 1.8E-22 3.9E-27 159.2 16.3 156 18-173 4-165 (169)
88 cd01863 Rab18 Rab18 subfamily. 99.9 2.9E-22 6.3E-27 156.9 14.8 151 22-172 1-157 (161)
89 cd04148 RGK RGK subfamily. Th 99.9 1.9E-22 4.1E-27 167.2 14.3 154 22-177 1-163 (221)
90 cd04135 Tc10 TC10 subfamily. 99.9 2.9E-22 6.3E-27 158.9 14.5 115 22-138 1-119 (174)
91 cd04146 RERG_RasL11_like RERG/ 99.9 1.1E-22 2.3E-27 160.3 11.7 150 23-173 1-160 (165)
92 cd04123 Rab21 Rab21 subfamily. 99.9 4.4E-22 9.5E-27 155.2 15.0 151 22-172 1-157 (162)
93 KOG4252|consensus 99.9 1.6E-24 3.5E-29 169.0 1.1 162 11-173 10-177 (246)
94 cd04177 RSR1 RSR1 subgroup. R 99.9 3.3E-22 7.1E-27 158.2 14.4 151 22-173 2-160 (168)
95 PTZ00132 GTP-binding nuclear p 99.9 5.1E-22 1.1E-26 163.6 15.6 156 16-173 4-164 (215)
96 cd01862 Rab7 Rab7 subfamily. 99.9 7.2E-22 1.6E-26 155.9 15.1 152 22-173 1-163 (172)
97 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 3.4E-22 7.4E-27 158.0 11.0 113 23-140 1-116 (164)
98 cd01870 RhoA_like RhoA-like su 99.9 1.3E-21 2.7E-26 155.4 12.1 114 22-137 2-119 (175)
99 cd00154 Rab Rab family. Rab G 99.9 4.6E-21 1E-25 148.1 14.8 151 22-172 1-157 (159)
100 cd04147 Ras_dva Ras-dva subfam 99.9 4.4E-21 9.4E-26 156.2 13.7 150 23-173 1-159 (198)
101 smart00177 ARF ARF-like small 99.9 1.4E-21 3E-26 156.2 10.1 115 20-139 12-130 (175)
102 cd04150 Arf1_5_like Arf1-Arf5- 99.9 4E-21 8.7E-26 151.1 12.2 112 22-138 1-116 (159)
103 cd04139 RalA_RalB RalA/RalB su 99.9 8.5E-21 1.8E-25 148.4 14.0 151 22-173 1-158 (164)
104 cd04129 Rho2 Rho2 subfamily. 99.9 1.1E-20 2.4E-25 152.4 15.0 150 22-173 2-169 (187)
105 cd04149 Arf6 Arf6 subfamily. 99.9 2.2E-21 4.9E-26 154.0 10.5 113 20-137 8-124 (168)
106 PLN00223 ADP-ribosylation fact 99.9 3.7E-21 8E-26 154.7 11.8 116 19-139 15-134 (181)
107 cd01893 Miro1 Miro1 subfamily. 99.9 8.7E-21 1.9E-25 149.9 13.0 149 22-173 1-160 (166)
108 cd00876 Ras Ras family. The R 99.8 1.7E-20 3.7E-25 145.9 13.5 150 23-173 1-157 (160)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.6E-20 3.5E-25 151.0 12.6 117 21-138 3-124 (183)
110 COG1100 GTPase SAR1 and relate 99.8 2E-20 4.3E-25 153.9 13.3 120 21-140 5-128 (219)
111 cd00157 Rho Rho (Ras homology) 99.8 3.2E-20 7E-25 146.3 13.9 117 22-140 1-121 (171)
112 PTZ00133 ADP-ribosylation fact 99.8 1.5E-20 3.3E-25 151.2 12.2 114 20-138 16-133 (182)
113 cd04158 ARD1 ARD1 subfamily. 99.8 2.2E-20 4.7E-25 148.2 10.9 110 23-137 1-114 (169)
114 cd04157 Arl6 Arl6 subfamily. 99.8 3.2E-20 6.9E-25 145.1 11.4 112 23-138 1-119 (162)
115 cd04161 Arl2l1_Arl13_like Arl2 99.8 4.3E-20 9.3E-25 146.4 12.0 112 23-139 1-116 (167)
116 cd04154 Arl2 Arl2 subfamily. 99.8 6.4E-20 1.4E-24 145.8 12.5 115 19-138 12-130 (173)
117 cd04137 RheB Rheb (Ras Homolog 99.8 9.3E-20 2E-24 145.5 13.4 151 22-173 2-159 (180)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.5E-19 5.3E-24 140.1 12.2 111 23-137 1-115 (160)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3.1E-19 6.6E-24 142.3 12.4 113 20-137 14-130 (174)
120 PF08477 Miro: Miro-like prote 99.8 2.9E-19 6.3E-24 133.2 10.8 111 23-134 1-119 (119)
121 KOG0070|consensus 99.8 2.3E-19 4.9E-24 141.2 8.0 117 17-138 13-133 (181)
122 cd04151 Arl1 Arl1 subfamily. 99.8 1.3E-18 2.8E-23 136.1 11.7 111 23-138 1-115 (158)
123 cd00879 Sar1 Sar1 subfamily. 99.8 1.5E-18 3.3E-23 139.7 11.0 114 19-137 17-134 (190)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.6E-18 5.7E-23 134.1 11.9 112 23-139 1-116 (158)
125 KOG0073|consensus 99.8 1.1E-18 2.4E-23 134.5 9.3 117 17-138 12-132 (185)
126 KOG0096|consensus 99.8 1.9E-18 4.1E-23 136.2 9.8 120 19-139 8-130 (216)
127 TIGR00231 small_GTP small GTP- 99.8 1.2E-17 2.7E-22 128.1 14.1 118 21-138 1-123 (161)
128 KOG0071|consensus 99.8 2.5E-18 5.3E-23 129.5 9.6 116 20-140 16-131 (180)
129 KOG1673|consensus 99.8 1.2E-18 2.7E-23 133.2 8.0 157 17-174 16-183 (205)
130 PTZ00099 rab6; Provisional 99.8 9.5E-18 2.1E-22 134.4 11.9 131 43-173 2-138 (176)
131 smart00178 SAR Sar1p-like memb 99.7 1.5E-17 3.4E-22 133.8 12.4 114 19-137 15-132 (184)
132 PF00025 Arf: ADP-ribosylation 99.7 2.8E-17 6.1E-22 131.4 13.6 118 18-140 11-132 (175)
133 cd04159 Arl10_like Arl10-like 99.7 2.1E-17 4.5E-22 127.7 11.7 112 23-138 1-116 (159)
134 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2.6E-17 5.7E-22 129.4 11.3 112 23-138 1-122 (167)
135 cd01890 LepA LepA subfamily. 99.7 6.1E-17 1.3E-21 128.8 11.5 111 23-137 2-133 (179)
136 cd04155 Arl3 Arl3 subfamily. 99.7 3E-16 6.6E-21 124.1 13.2 115 19-138 12-130 (173)
137 cd01891 TypA_BipA TypA (tyrosi 99.7 1.3E-16 2.9E-21 129.3 9.9 114 22-138 3-132 (194)
138 TIGR02528 EutP ethanolamine ut 99.7 1E-16 2.2E-21 123.1 7.9 127 23-172 2-140 (142)
139 cd04171 SelB SelB subfamily. 99.7 4.8E-16 1E-20 121.3 11.4 113 23-138 2-119 (164)
140 KOG0074|consensus 99.7 2.3E-16 4.9E-21 119.1 9.0 89 19-111 15-106 (185)
141 KOG3883|consensus 99.7 3.9E-16 8.4E-21 119.3 10.2 142 19-161 7-157 (198)
142 cd01878 HflX HflX subfamily. 99.7 7.9E-16 1.7E-20 125.5 11.9 145 19-171 39-199 (204)
143 cd04105 SR_beta Signal recogni 99.7 8.1E-16 1.8E-20 125.9 11.3 117 23-140 2-126 (203)
144 cd01897 NOG NOG1 is a nucleola 99.7 1.4E-15 3.1E-20 119.6 12.0 144 23-172 2-163 (168)
145 cd01879 FeoB Ferrous iron tran 99.7 9.6E-16 2.1E-20 119.1 10.8 142 26-172 1-152 (158)
146 cd01898 Obg Obg subfamily. Th 99.6 1.4E-15 3E-20 119.8 10.9 114 23-139 2-130 (170)
147 KOG4423|consensus 99.6 1.2E-18 2.7E-23 136.9 -8.5 128 11-138 15-150 (229)
148 cd00882 Ras_like_GTPase Ras-li 99.6 6.6E-15 1.4E-19 111.5 12.2 114 26-140 1-119 (157)
149 PRK04213 GTP-binding protein; 99.6 1.6E-15 3.4E-20 123.4 8.1 114 19-138 7-145 (201)
150 KOG0075|consensus 99.6 6.3E-16 1.4E-20 117.4 4.8 117 21-141 20-140 (186)
151 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 7.6E-15 1.6E-19 115.2 10.1 112 23-137 2-116 (168)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.3E-14 5E-19 129.9 14.3 111 19-137 201-324 (442)
153 TIGR03156 GTP_HflX GTP-binding 99.6 5.6E-15 1.2E-19 130.3 9.1 115 19-137 187-315 (351)
154 PRK15494 era GTPase Era; Provi 99.5 4.7E-14 1E-18 124.0 11.9 146 18-173 49-212 (339)
155 PRK03003 GTP-binding protein D 99.5 7.8E-14 1.7E-18 127.8 12.6 112 20-137 37-160 (472)
156 PRK05291 trmE tRNA modificatio 99.5 5.2E-14 1.1E-18 128.1 9.7 110 20-138 214-336 (449)
157 PRK03003 GTP-binding protein D 99.5 1.4E-13 2.9E-18 126.2 11.8 113 19-137 209-336 (472)
158 PRK12299 obgE GTPase CgtA; Rev 99.5 2.5E-13 5.5E-18 119.1 12.8 149 22-173 159-324 (335)
159 TIGR03598 GTPase_YsxC ribosome 99.5 2.5E-13 5.5E-18 108.6 10.8 114 18-137 15-143 (179)
160 cd04164 trmE TrmE (MnmE, ThdF, 99.5 7.6E-13 1.6E-17 102.2 12.8 108 22-138 2-122 (157)
161 cd01894 EngA1 EngA1 subfamily. 99.5 3.6E-13 7.8E-18 104.1 10.7 109 25-139 1-121 (157)
162 TIGR01393 lepA GTP-binding pro 99.5 2.6E-13 5.7E-18 127.2 11.7 148 21-173 3-176 (595)
163 TIGR02729 Obg_CgtA Obg family 99.5 4.3E-13 9.2E-18 117.4 11.6 150 21-172 157-324 (329)
164 PRK00454 engB GTP-binding prot 99.5 4.1E-13 9E-18 108.3 10.5 116 18-138 21-150 (196)
165 PRK00093 GTP-binding protein D 99.5 7.9E-13 1.7E-17 119.9 13.0 144 22-174 2-159 (435)
166 cd00881 GTP_translation_factor 99.5 5E-13 1.1E-17 106.6 10.0 110 23-137 1-128 (189)
167 cd01881 Obg_like The Obg-like 99.4 6.4E-13 1.4E-17 104.9 9.9 112 26-140 1-137 (176)
168 cd01850 CDC_Septin CDC/Septin. 99.4 1.3E-12 2.9E-17 111.7 12.4 118 19-137 2-157 (276)
169 KOG1707|consensus 99.4 3E-13 6.4E-18 122.6 8.6 121 18-140 6-132 (625)
170 PRK15467 ethanolamine utilizat 99.4 4.3E-13 9.3E-18 105.5 7.6 131 23-173 3-143 (158)
171 TIGR00437 feoB ferrous iron tr 99.4 9.7E-13 2.1E-17 123.3 10.9 142 28-174 1-152 (591)
172 PRK11058 GTPase HflX; Provisio 99.4 1.3E-12 2.8E-17 118.0 11.0 116 21-137 197-323 (426)
173 TIGR00436 era GTP-binding prot 99.4 2E-12 4.3E-17 110.3 11.6 107 23-137 2-121 (270)
174 cd04167 Snu114p Snu114p subfam 99.4 1.2E-12 2.6E-17 107.7 9.5 110 23-136 2-136 (213)
175 TIGR03594 GTPase_EngA ribosome 99.4 4E-12 8.7E-17 115.0 13.3 112 18-136 169-296 (429)
176 cd01889 SelB_euk SelB subfamil 99.4 2.2E-12 4.7E-17 104.3 9.7 112 22-137 1-134 (192)
177 TIGR00487 IF-2 translation ini 99.4 3.5E-12 7.6E-17 119.3 12.0 117 18-137 84-201 (587)
178 PRK09518 bifunctional cytidyla 99.4 2.1E-12 4.5E-17 123.8 10.5 114 18-137 272-397 (712)
179 PRK09554 feoB ferrous iron tra 99.4 4.4E-12 9.5E-17 121.8 12.5 147 21-172 3-163 (772)
180 cd01895 EngA2 EngA2 subfamily. 99.4 6.2E-12 1.3E-16 98.4 11.3 112 21-138 2-128 (174)
181 cd04163 Era Era subfamily. Er 99.4 9.1E-12 2E-16 96.5 10.9 111 21-137 3-125 (168)
182 PRK12297 obgE GTPase CgtA; Rev 99.4 2E-11 4.4E-16 109.9 14.6 146 22-173 159-323 (424)
183 PRK10218 GTP-binding protein; 99.3 1.3E-11 2.8E-16 115.7 12.6 117 20-139 4-136 (607)
184 TIGR03594 GTPase_EngA ribosome 99.3 5.1E-12 1.1E-16 114.3 9.3 110 23-138 1-122 (429)
185 PRK05306 infB translation init 99.3 1.5E-11 3.3E-16 117.9 12.4 117 18-137 287-403 (787)
186 PRK12296 obgE GTPase CgtA; Rev 99.3 1.2E-11 2.7E-16 112.9 11.3 150 21-173 159-336 (500)
187 cd04168 TetM_like Tet(M)-like 99.3 8.1E-12 1.8E-16 104.6 9.2 112 23-137 1-130 (237)
188 PRK09518 bifunctional cytidyla 99.3 1.9E-11 4.1E-16 117.2 12.2 111 20-137 449-575 (712)
189 TIGR00475 selB selenocysteine- 99.3 2.4E-11 5.1E-16 113.9 12.4 113 22-138 1-118 (581)
190 PF02421 FeoB_N: Ferrous iron 99.3 1.4E-11 3.1E-16 96.4 9.1 142 22-169 1-153 (156)
191 CHL00189 infB translation init 99.3 1.5E-11 3.3E-16 117.0 10.9 117 18-138 241-362 (742)
192 PRK05433 GTP-binding protein L 99.3 1.8E-11 3.8E-16 115.0 11.3 116 19-138 5-141 (600)
193 cd04169 RF3 RF3 subfamily. Pe 99.3 3.1E-11 6.7E-16 102.9 11.2 114 22-138 3-138 (267)
194 KOG0072|consensus 99.3 1.8E-12 4E-17 98.3 3.0 115 18-137 15-133 (182)
195 cd01876 YihA_EngB The YihA (En 99.3 2E-11 4.4E-16 94.9 8.7 106 23-137 1-124 (170)
196 TIGR00491 aIF-2 translation in 99.3 1.6E-11 3.4E-16 114.8 9.4 111 23-137 6-135 (590)
197 smart00010 small_GTPase Small 99.2 2.4E-11 5.2E-16 90.5 7.3 87 22-137 1-91 (124)
198 cd04104 p47_IIGP_like p47 (47- 99.2 5.8E-11 1.3E-15 96.6 9.9 113 21-137 1-121 (197)
199 KOG0076|consensus 99.2 1.2E-11 2.5E-16 96.7 5.2 116 18-137 14-140 (197)
200 TIGR00483 EF-1_alpha translati 99.2 7.4E-11 1.6E-15 106.9 10.8 118 17-137 3-155 (426)
201 TIGR01394 TypA_BipA GTP-bindin 99.2 7E-11 1.5E-15 110.8 10.4 113 23-138 3-131 (594)
202 cd00880 Era_like Era (E. coli 99.2 1.1E-10 2.3E-15 89.3 9.7 110 26-140 1-121 (163)
203 PRK00089 era GTPase Era; Revie 99.2 1.4E-10 3.1E-15 99.8 11.3 113 20-137 4-127 (292)
204 cd01885 EF2 EF2 (for archaea a 99.2 7.3E-11 1.6E-15 97.9 8.3 108 23-136 2-138 (222)
205 PF01926 MMR_HSR1: 50S ribosom 99.2 4.4E-10 9.6E-15 83.4 11.2 102 23-132 1-116 (116)
206 COG2229 Predicted GTPase [Gene 99.2 3.6E-10 7.9E-15 89.3 11.1 119 17-141 6-139 (187)
207 cd04166 CysN_ATPS CysN_ATPS su 99.2 2E-10 4.2E-15 94.3 9.7 111 23-137 1-144 (208)
208 PRK00093 GTP-binding protein D 99.2 4.1E-10 8.9E-15 102.2 12.4 112 19-137 171-298 (435)
209 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 2.9E-10 6.2E-15 94.7 10.4 111 23-137 1-125 (232)
210 cd01888 eIF2_gamma eIF2-gamma 99.1 3.1E-10 6.7E-15 92.8 10.0 114 22-137 1-151 (203)
211 PF09439 SRPRB: Signal recogni 99.1 6.9E-11 1.5E-15 94.6 5.8 115 22-140 4-129 (181)
212 KOG0077|consensus 99.1 1.2E-10 2.5E-15 90.5 6.7 115 20-139 19-137 (193)
213 cd04170 EF-G_bact Elongation f 99.1 2.4E-10 5.2E-15 97.3 9.3 110 23-138 1-131 (268)
214 PRK04004 translation initiatio 99.1 3.6E-10 7.8E-15 105.9 11.3 114 19-136 4-136 (586)
215 cd01896 DRG The developmentall 99.1 5.9E-10 1.3E-14 93.2 11.5 79 23-104 2-88 (233)
216 PRK12298 obgE GTPase CgtA; Rev 99.1 4.3E-10 9.3E-15 100.6 11.2 115 22-138 160-290 (390)
217 COG0486 ThdF Predicted GTPase 99.1 4.3E-10 9.3E-15 100.5 10.9 116 19-140 215-341 (454)
218 TIGR00503 prfC peptide chain r 99.1 3.8E-10 8.3E-15 104.5 10.9 118 17-137 7-146 (527)
219 PRK13351 elongation factor G; 99.1 2.3E-10 4.9E-15 109.5 9.6 112 19-138 6-140 (687)
220 PRK12317 elongation factor 1-a 99.1 5.3E-10 1.2E-14 101.3 11.3 119 18-137 3-153 (425)
221 PRK00741 prfC peptide chain re 99.1 6.3E-10 1.4E-14 103.1 9.8 119 18-139 7-147 (526)
222 cd01899 Ygr210 Ygr210 subfamil 99.1 3.5E-10 7.7E-15 98.5 7.4 81 24-104 1-110 (318)
223 COG1160 Predicted GTPases [Gen 99.1 8.1E-10 1.8E-14 98.5 9.5 107 22-137 4-126 (444)
224 TIGR00490 aEF-2 translation el 99.0 6.3E-10 1.4E-14 106.9 9.0 117 17-137 15-152 (720)
225 cd01886 EF-G Elongation factor 99.0 3.7E-09 8.1E-14 90.2 11.3 110 23-137 1-130 (270)
226 KOG1707|consensus 99.0 2.7E-09 5.9E-14 97.2 10.8 121 13-137 417-540 (625)
227 COG1159 Era GTPase [General fu 99.0 3.4E-09 7.3E-14 90.0 10.3 147 20-172 5-167 (298)
228 PF00009 GTP_EFTU: Elongation 99.0 1.7E-09 3.6E-14 87.2 7.9 112 20-136 2-135 (188)
229 TIGR00991 3a0901s02IAP34 GTP-b 99.0 8.6E-09 1.9E-13 88.9 12.4 117 17-136 34-166 (313)
230 PRK10512 selenocysteinyl-tRNA- 99.0 6.6E-09 1.4E-13 98.0 11.9 110 23-137 2-118 (614)
231 COG0218 Predicted GTPase [Gene 98.9 5.8E-09 1.3E-13 84.0 9.5 110 19-137 22-149 (200)
232 KOG1423|consensus 98.9 2.4E-09 5.1E-14 91.1 7.5 93 9-104 60-166 (379)
233 cd01883 EF1_alpha Eukaryotic e 98.9 3.6E-09 7.8E-14 87.5 8.5 111 23-137 1-151 (219)
234 cd00066 G-alpha G protein alph 98.9 3.3E-09 7.2E-14 92.6 8.6 69 69-137 160-242 (317)
235 TIGR00485 EF-Tu translation el 98.9 6.7E-09 1.4E-13 93.3 10.6 118 18-137 9-142 (394)
236 PRK12735 elongation factor Tu; 98.9 1.2E-08 2.6E-13 91.6 11.4 118 18-137 9-142 (396)
237 PLN03126 Elongation factor Tu; 98.9 8.1E-09 1.8E-13 94.7 10.2 118 18-137 78-211 (478)
238 cd01884 EF_Tu EF-Tu subfamily. 98.9 1.3E-08 2.8E-13 82.8 10.3 114 21-136 2-131 (195)
239 COG1084 Predicted GTPase [Gene 98.9 1.4E-08 3E-13 87.2 10.7 113 20-140 167-297 (346)
240 TIGR00484 EF-G translation elo 98.9 1.1E-08 2.5E-13 97.9 11.1 114 18-137 7-141 (689)
241 TIGR03680 eif2g_arch translati 98.9 9.6E-09 2.1E-13 92.6 9.1 118 19-138 2-149 (406)
242 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 1.8E-08 3.8E-13 81.8 9.7 109 22-134 1-127 (196)
243 KOG1191|consensus 98.9 6.9E-09 1.5E-13 93.1 7.7 123 19-144 266-410 (531)
244 PRK12736 elongation factor Tu; 98.8 2.2E-08 4.8E-13 89.9 10.8 118 18-137 9-142 (394)
245 cd01853 Toc34_like Toc34-like 98.8 5E-08 1.1E-12 82.3 11.3 118 16-136 26-162 (249)
246 PRK09602 translation-associate 98.8 2E-08 4.4E-13 90.1 8.8 83 22-104 2-113 (396)
247 PRK04000 translation initiatio 98.8 2.4E-08 5.1E-13 90.2 8.9 120 16-138 4-154 (411)
248 CHL00071 tufA elongation facto 98.8 7.5E-08 1.6E-12 86.9 11.7 117 17-137 8-142 (409)
249 smart00275 G_alpha G protein a 98.8 3.2E-08 7E-13 87.2 9.1 74 62-137 178-265 (342)
250 cd04165 GTPBP1_like GTPBP1-lik 98.8 7.6E-08 1.6E-12 80.0 10.7 110 23-137 1-152 (224)
251 PLN00043 elongation factor 1-a 98.8 2.3E-08 5E-13 91.1 8.2 119 18-136 4-158 (447)
252 PRK00049 elongation factor Tu; 98.7 1.2E-07 2.5E-12 85.3 11.5 118 18-137 9-142 (396)
253 PRK05124 cysN sulfate adenylyl 98.7 7.2E-08 1.6E-12 88.5 9.9 115 18-137 24-174 (474)
254 KOG0090|consensus 98.7 3.8E-08 8.2E-13 79.8 7.0 114 22-140 39-162 (238)
255 PRK12739 elongation factor G; 98.7 7.2E-08 1.6E-12 92.4 10.3 114 19-137 6-139 (691)
256 TIGR02034 CysN sulfate adenyly 98.7 5.6E-08 1.2E-12 87.6 8.6 111 22-137 1-147 (406)
257 PRK05506 bifunctional sulfate 98.7 7.6E-08 1.7E-12 91.4 9.4 117 17-137 20-171 (632)
258 COG3596 Predicted GTPase [Gene 98.7 4E-08 8.8E-13 82.6 6.2 106 18-126 36-152 (296)
259 PF04548 AIG1: AIG1 family; I 98.7 1.1E-07 2.4E-12 78.2 8.6 98 22-123 1-114 (212)
260 PLN03127 Elongation factor Tu; 98.6 3.7E-07 8.1E-12 83.2 11.5 115 19-137 59-191 (447)
261 KOG0705|consensus 98.6 3.4E-08 7.4E-13 89.6 4.5 112 20-138 29-144 (749)
262 COG0370 FeoB Fe2+ transport sy 98.6 4.1E-07 8.9E-12 84.9 11.7 148 20-173 2-160 (653)
263 COG1160 Predicted GTPases [Gen 98.6 1.8E-07 4E-12 83.6 8.8 114 20-139 177-305 (444)
264 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1E-07 2.2E-12 73.3 6.3 54 23-80 85-138 (141)
265 COG1163 DRG Predicted GTPase [ 98.6 4.1E-07 8.9E-12 78.2 9.8 98 18-118 60-166 (365)
266 PRK12740 elongation factor G; 98.5 2.9E-07 6.3E-12 88.0 9.1 106 27-138 1-127 (668)
267 KOG3886|consensus 98.5 8.6E-08 1.9E-12 78.7 4.7 114 21-138 4-131 (295)
268 TIGR00993 3a0901s04IAP86 chlor 98.5 6.4E-07 1.4E-11 83.9 10.8 113 18-134 115-247 (763)
269 PRK00007 elongation factor G; 98.5 4.2E-07 9.1E-12 87.2 9.8 114 18-137 7-141 (693)
270 PTZ00141 elongation factor 1- 98.5 6.8E-07 1.5E-11 81.5 10.7 119 18-136 4-158 (446)
271 cd01859 MJ1464 MJ1464. This f 98.5 4.8E-07 1E-11 70.6 7.1 56 20-79 100-155 (156)
272 PLN00116 translation elongatio 98.5 6.5E-07 1.4E-11 87.6 9.3 118 15-136 13-163 (843)
273 cd01856 YlqF YlqF. Proteins o 98.5 4.9E-07 1.1E-11 71.8 6.9 58 19-80 113-170 (171)
274 PF10662 PduV-EutP: Ethanolami 98.4 5.1E-07 1.1E-11 69.5 6.3 96 23-137 3-103 (143)
275 PTZ00416 elongation factor 2; 98.4 9E-07 2E-11 86.5 9.2 115 18-136 16-157 (836)
276 PTZ00258 GTP-binding protein; 98.4 7.6E-07 1.6E-11 79.5 7.6 85 18-103 18-125 (390)
277 KOG1489|consensus 98.4 1.8E-06 3.8E-11 74.1 8.8 110 23-139 198-328 (366)
278 PF00350 Dynamin_N: Dynamin fa 98.4 3.4E-06 7.3E-11 66.2 9.9 34 71-104 102-139 (168)
279 cd01900 YchF YchF subfamily. 98.4 7.3E-07 1.6E-11 76.2 6.4 79 24-103 1-102 (274)
280 PF00735 Septin: Septin; Inte 98.4 1.7E-06 3.8E-11 74.2 8.3 61 19-79 2-72 (281)
281 PRK09601 GTP-binding protein Y 98.3 2.1E-06 4.6E-11 75.9 8.2 82 22-104 3-107 (364)
282 PRK07560 elongation factor EF- 98.3 1.5E-06 3.1E-11 84.0 7.6 116 17-136 16-152 (731)
283 cd04178 Nucleostemin_like Nucl 98.3 2.2E-06 4.9E-11 68.3 7.2 57 19-79 115-171 (172)
284 PF05783 DLIC: Dynein light in 98.3 4.4E-06 9.4E-11 76.4 9.9 99 21-122 25-133 (472)
285 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.4E-06 5.3E-11 66.7 7.2 56 20-79 101-156 (157)
286 KOG0082|consensus 98.3 2.8E-06 6E-11 74.5 8.0 74 62-137 189-276 (354)
287 cd01882 BMS1 Bms1. Bms1 is an 98.2 9.8E-06 2.1E-10 67.4 9.7 109 19-137 37-147 (225)
288 PRK09563 rbgA GTPase YlqF; Rev 98.2 5.5E-06 1.2E-10 71.3 8.0 59 19-81 119-177 (287)
289 TIGR03596 GTPase_YlqF ribosome 98.2 4.4E-06 9.6E-11 71.5 7.3 58 19-80 116-173 (276)
290 KOG0462|consensus 98.2 1.4E-05 3E-10 73.0 10.7 117 19-140 58-194 (650)
291 COG0481 LepA Membrane GTPase L 98.1 1.1E-05 2.4E-10 72.7 8.5 118 19-140 7-145 (603)
292 cd01855 YqeH YqeH. YqeH is an 98.1 5.1E-06 1.1E-10 66.9 5.8 55 22-79 128-189 (190)
293 COG2262 HflX GTPases [General 98.1 2.4E-05 5.1E-10 69.4 9.8 120 18-140 189-321 (411)
294 KOG1547|consensus 98.1 1.2E-05 2.7E-10 66.6 7.2 61 19-79 44-113 (336)
295 PF05049 IIGP: Interferon-indu 98.1 6.2E-06 1.3E-10 73.1 5.5 111 20-135 34-153 (376)
296 COG5256 TEF1 Translation elong 98.1 2.4E-05 5.1E-10 69.5 8.9 119 18-137 4-159 (428)
297 COG1161 Predicted GTPases [Gen 98.0 1.2E-05 2.6E-10 70.4 6.6 58 19-80 130-187 (322)
298 KOG0468|consensus 98.0 3.4E-05 7.3E-10 72.0 9.5 116 15-134 122-260 (971)
299 smart00053 DYNc Dynamin, GTPas 98.0 4.2E-05 9E-10 64.2 9.4 67 70-137 125-206 (240)
300 COG5019 CDC3 Septin family pro 98.0 6.2E-05 1.3E-09 65.9 10.3 62 18-79 20-91 (373)
301 KOG3905|consensus 98.0 3.7E-05 8E-10 66.4 8.2 99 20-121 51-159 (473)
302 COG0536 Obg Predicted GTPase [ 97.9 4.4E-05 9.6E-10 66.3 8.2 116 23-140 161-292 (369)
303 COG0532 InfB Translation initi 97.9 9.5E-05 2.1E-09 67.5 9.7 114 21-140 5-124 (509)
304 KOG2655|consensus 97.9 4.5E-05 9.8E-10 67.1 7.1 63 18-80 18-89 (366)
305 PRK14845 translation initiatio 97.8 6.5E-05 1.4E-09 74.6 8.5 63 72-137 528-592 (1049)
306 TIGR00157 ribosome small subun 97.8 3.4E-05 7.4E-10 65.0 5.5 90 81-173 24-119 (245)
307 KOG1486|consensus 97.8 0.0002 4.3E-09 60.0 9.7 97 18-117 59-164 (364)
308 PRK09866 hypothetical protein; 97.8 0.00039 8.5E-09 65.5 12.2 106 71-178 231-354 (741)
309 cd01849 YlqF_related_GTPase Yl 97.8 9E-05 1.9E-09 57.7 6.7 57 19-79 98-154 (155)
310 PF03193 DUF258: Protein of un 97.7 4E-05 8.6E-10 60.4 4.4 24 22-45 36-59 (161)
311 PRK13768 GTPase; Provisional 97.7 3.3E-05 7.1E-10 65.4 3.9 68 71-139 98-178 (253)
312 COG4917 EutP Ethanolamine util 97.7 2.8E-05 6.2E-10 58.2 2.6 133 23-172 3-141 (148)
313 PTZ00327 eukaryotic translatio 97.7 0.00015 3.2E-09 66.4 7.8 119 17-137 30-185 (460)
314 PRK12288 GTPase RsgA; Reviewed 97.7 8.8E-05 1.9E-09 65.6 6.0 78 24-120 208-291 (347)
315 PF03029 ATP_bind_1: Conserved 97.7 3.6E-05 7.9E-10 64.5 3.4 67 71-137 92-170 (238)
316 TIGR00092 GTP-binding protein 97.6 0.00017 3.7E-09 64.0 7.5 82 22-104 3-108 (368)
317 KOG1954|consensus 97.6 0.00024 5.3E-09 62.4 7.9 122 17-140 54-228 (532)
318 PRK12289 GTPase RsgA; Reviewed 97.6 0.00011 2.4E-09 65.0 5.7 57 23-82 174-236 (352)
319 TIGR03597 GTPase_YqeH ribosome 97.6 0.00018 3.8E-09 64.0 6.8 58 22-82 155-216 (360)
320 cd01851 GBP Guanylate-binding 97.6 0.00052 1.1E-08 57.0 9.1 85 19-104 5-102 (224)
321 PRK13796 GTPase YqeH; Provisio 97.6 0.00012 2.6E-09 65.2 5.5 57 22-81 161-221 (365)
322 KOG0458|consensus 97.5 0.0003 6.5E-09 64.8 7.9 119 18-137 174-329 (603)
323 COG0480 FusA Translation elong 97.5 0.00047 1E-08 66.0 9.2 115 18-136 7-141 (697)
324 TIGR00157 ribosome small subun 97.5 0.00018 3.9E-09 60.6 5.6 79 23-121 122-206 (245)
325 COG1217 TypA Predicted membran 97.5 0.00046 1E-08 62.3 8.2 118 21-141 5-138 (603)
326 KOG1491|consensus 97.5 0.00022 4.9E-09 61.9 6.1 87 18-104 17-125 (391)
327 COG0012 Predicted GTPase, prob 97.5 0.0005 1.1E-08 60.6 7.9 83 21-104 2-108 (372)
328 PF03266 NTPase_1: NTPase; In 97.4 0.00024 5.2E-09 56.4 5.0 52 23-77 1-52 (168)
329 KOG1490|consensus 97.3 0.00023 5E-09 64.7 4.4 116 18-139 165-297 (620)
330 KOG1145|consensus 97.3 0.0014 3E-08 60.4 9.2 116 18-140 150-270 (683)
331 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00049 1.1E-08 59.3 6.1 59 22-83 162-226 (287)
332 COG1618 Predicted nucleotide k 97.3 0.0023 5.1E-08 50.2 8.9 56 20-78 4-59 (179)
333 COG2895 CysN GTPases - Sulfate 97.3 0.0021 4.6E-08 56.3 9.4 125 18-144 3-160 (431)
334 TIGR02836 spore_IV_A stage IV 97.3 0.0023 5E-08 57.6 9.7 112 20-134 16-191 (492)
335 PRK00098 GTPase RsgA; Reviewed 97.3 0.00064 1.4E-08 58.9 6.1 82 23-123 166-253 (298)
336 KOG4273|consensus 97.2 0.00099 2.1E-08 55.8 6.5 91 23-115 6-103 (418)
337 KOG0099|consensus 97.2 0.0011 2.4E-08 55.9 6.8 39 69-107 201-239 (379)
338 TIGR03348 VI_IcmF type VI secr 97.1 0.0014 3E-08 66.6 7.8 110 24-138 114-258 (1169)
339 COG1162 Predicted GTPases [Gen 97.1 0.00091 2E-08 57.6 5.3 80 23-121 166-251 (301)
340 KOG1424|consensus 97.1 0.001 2.2E-08 60.7 5.7 61 17-81 310-370 (562)
341 cd02042 ParA ParA and ParB of 97.1 0.002 4.3E-08 46.4 6.2 81 24-115 2-85 (104)
342 COG4108 PrfC Peptide chain rel 97.0 0.0035 7.7E-08 56.4 8.4 115 21-140 12-150 (528)
343 KOG3859|consensus 97.0 0.0036 7.9E-08 53.3 7.9 63 17-79 38-104 (406)
344 PRK14722 flhF flagellar biosyn 97.0 0.0013 2.8E-08 58.6 5.6 116 22-137 138-295 (374)
345 COG1419 FlhF Flagellar GTP-bin 96.8 0.0053 1.1E-07 54.9 8.0 112 21-136 203-351 (407)
346 cd03111 CpaE_like This protein 96.8 0.0042 9.1E-08 45.3 6.3 86 28-121 7-94 (106)
347 TIGR01425 SRP54_euk signal rec 96.8 0.0047 1E-07 56.1 7.5 114 20-136 99-252 (429)
348 KOG1144|consensus 96.8 0.0031 6.7E-08 60.0 6.2 84 17-104 471-574 (1064)
349 KOG0461|consensus 96.8 0.013 2.9E-07 51.3 9.6 88 17-104 3-104 (522)
350 PRK09435 membrane ATPase/prote 96.7 0.004 8.7E-08 54.7 6.5 61 69-137 148-208 (332)
351 KOG3887|consensus 96.7 0.002 4.3E-08 53.8 4.3 98 19-120 25-130 (347)
352 cd03115 SRP The signal recogni 96.7 0.007 1.5E-07 47.8 7.1 66 69-137 82-153 (173)
353 cd03112 CobW_like The function 96.7 0.006 1.3E-07 47.8 6.7 21 24-44 3-23 (158)
354 PRK14721 flhF flagellar biosyn 96.7 0.0051 1.1E-07 55.7 7.0 113 21-137 191-340 (420)
355 KOG2486|consensus 96.7 0.0029 6.4E-08 53.8 4.9 111 18-137 133-262 (320)
356 PF13207 AAA_17: AAA domain; P 96.7 0.0016 3.6E-08 48.0 3.0 22 23-44 1-22 (121)
357 PRK08118 topology modulation p 96.6 0.0018 4E-08 51.2 3.2 22 23-44 3-24 (167)
358 PF00503 G-alpha: G-protein al 96.6 0.012 2.6E-07 52.8 8.6 82 52-137 221-317 (389)
359 KOG0410|consensus 96.6 0.0046 9.9E-08 53.7 5.5 78 23-104 180-268 (410)
360 COG5192 BMS1 GTP-binding prote 96.5 0.0047 1E-07 57.2 5.6 83 17-107 65-148 (1077)
361 PRK12727 flagellar biosynthesi 96.5 0.012 2.7E-07 54.6 8.2 111 21-137 350-498 (559)
362 TIGR00064 ftsY signal recognit 96.5 0.0056 1.2E-07 52.4 5.6 65 69-137 154-231 (272)
363 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0083 1.8E-07 48.0 6.2 66 23-99 27-95 (177)
364 PF13671 AAA_33: AAA domain; P 96.5 0.0023 5.1E-08 48.5 2.9 21 24-44 2-22 (143)
365 PF13521 AAA_28: AAA domain; P 96.5 0.002 4.4E-08 50.4 2.6 22 23-44 1-22 (163)
366 PRK07261 topology modulation p 96.5 0.0026 5.6E-08 50.5 3.2 22 23-44 2-23 (171)
367 PRK14738 gmk guanylate kinase; 96.4 0.0048 1E-07 50.5 4.7 31 14-44 6-36 (206)
368 KOG0447|consensus 96.4 0.021 4.6E-07 52.9 9.1 70 71-140 413-496 (980)
369 COG0563 Adk Adenylate kinase a 96.4 0.0025 5.4E-08 51.1 2.8 23 22-44 1-23 (178)
370 KOG2484|consensus 96.4 0.004 8.7E-08 55.3 4.1 59 18-80 249-307 (435)
371 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.026 5.7E-07 39.0 7.2 79 24-116 2-83 (99)
372 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.019 4.2E-07 44.1 6.9 66 23-99 28-94 (144)
373 PF00004 AAA: ATPase family as 96.2 0.0047 1E-07 45.9 3.0 21 24-44 1-21 (132)
374 COG1116 TauB ABC-type nitrate/ 96.1 0.0045 9.8E-08 51.8 3.1 21 24-44 32-52 (248)
375 COG3842 PotA ABC-type spermidi 96.1 0.0088 1.9E-07 52.9 4.8 22 24-45 34-55 (352)
376 PF00005 ABC_tran: ABC transpo 96.1 0.0051 1.1E-07 46.4 2.9 22 23-44 13-34 (137)
377 TIGR00150 HI0065_YjeE ATPase, 96.1 0.018 4E-07 43.9 5.9 22 23-44 24-45 (133)
378 cd02038 FleN-like FleN is a me 96.1 0.014 3.1E-07 44.5 5.3 103 25-134 4-108 (139)
379 PRK14737 gmk guanylate kinase; 96.0 0.0052 1.1E-07 49.6 3.0 23 22-44 5-27 (186)
380 smart00382 AAA ATPases associa 96.0 0.0066 1.4E-07 44.6 3.3 26 22-47 3-28 (148)
381 KOG0066|consensus 96.0 0.037 7.9E-07 50.3 8.1 100 21-120 613-751 (807)
382 PRK06217 hypothetical protein; 96.0 0.0069 1.5E-07 48.4 3.3 23 22-44 2-24 (183)
383 PF07728 AAA_5: AAA domain (dy 96.0 0.0061 1.3E-07 46.2 2.9 22 23-44 1-22 (139)
384 PRK10078 ribose 1,5-bisphospho 96.0 0.0069 1.5E-07 48.6 3.3 22 23-44 4-25 (186)
385 COG1126 GlnQ ABC-type polar am 96.0 0.0067 1.4E-07 50.0 3.1 21 23-43 30-50 (240)
386 cd02019 NK Nucleoside/nucleoti 95.9 0.0079 1.7E-07 40.3 3.0 21 24-44 2-22 (69)
387 COG0194 Gmk Guanylate kinase [ 95.9 0.0053 1.2E-07 49.3 2.4 24 22-45 5-28 (191)
388 COG4525 TauB ABC-type taurine 95.9 0.0065 1.4E-07 49.4 2.9 22 23-44 33-54 (259)
389 TIGR00101 ureG urease accessor 95.9 0.0075 1.6E-07 49.2 3.3 24 21-44 1-24 (199)
390 TIGR02322 phosphon_PhnN phosph 95.9 0.0068 1.5E-07 48.1 3.0 22 23-44 3-24 (179)
391 COG3638 ABC-type phosphate/pho 95.9 0.012 2.6E-07 49.1 4.4 28 23-55 32-59 (258)
392 PF13555 AAA_29: P-loop contai 95.9 0.0094 2E-07 39.2 3.1 21 23-43 25-45 (62)
393 COG1120 FepC ABC-type cobalami 95.9 0.0068 1.5E-07 51.3 3.0 20 24-43 31-50 (258)
394 COG3839 MalK ABC-type sugar tr 95.9 0.0067 1.4E-07 53.3 3.1 20 24-43 32-51 (338)
395 cd00071 GMPK Guanosine monopho 95.9 0.0077 1.7E-07 46.0 3.1 21 24-44 2-22 (137)
396 cd03238 ABC_UvrA The excision 95.8 0.0086 1.9E-07 47.9 3.3 21 22-42 22-42 (176)
397 cd03260 ABC_PstB_phosphate_tra 95.8 0.019 4.1E-07 47.4 5.4 23 23-45 28-50 (227)
398 TIGR03263 guanyl_kin guanylate 95.8 0.0082 1.8E-07 47.6 3.1 22 23-44 3-24 (180)
399 PF13401 AAA_22: AAA domain; P 95.8 0.0073 1.6E-07 45.0 2.7 23 23-45 6-28 (131)
400 KOG2485|consensus 95.8 0.012 2.5E-07 50.9 4.0 62 18-80 140-206 (335)
401 PF13191 AAA_16: AAA ATPase do 95.8 0.0078 1.7E-07 47.4 2.8 23 22-44 25-47 (185)
402 KOG0780|consensus 95.7 0.018 3.9E-07 51.2 5.1 88 17-104 97-224 (483)
403 TIGR02868 CydC thiol reductant 95.7 0.015 3.2E-07 54.2 4.9 35 23-68 363-397 (529)
404 PF04665 Pox_A32: Poxvirus A32 95.7 0.0096 2.1E-07 50.0 3.2 26 19-44 11-36 (241)
405 COG1136 SalX ABC-type antimicr 95.7 0.009 1.9E-07 49.6 2.9 22 23-44 33-54 (226)
406 COG4619 ABC-type uncharacteriz 95.7 0.018 3.9E-07 45.9 4.4 28 23-55 31-58 (223)
407 PF13238 AAA_18: AAA domain; P 95.7 0.0099 2.1E-07 43.9 2.9 21 24-44 1-21 (129)
408 cd03110 Fer4_NifH_child This p 95.7 0.065 1.4E-06 42.4 7.8 64 68-136 91-156 (179)
409 PF13173 AAA_14: AAA domain 95.6 0.0092 2E-07 44.8 2.7 24 23-46 4-27 (128)
410 PRK14530 adenylate kinase; Pro 95.6 0.011 2.4E-07 48.5 3.3 21 23-43 5-25 (215)
411 TIGR00959 ffh signal recogniti 95.6 0.031 6.7E-07 50.9 6.4 114 19-135 97-251 (428)
412 cd00009 AAA The AAA+ (ATPases 95.6 0.011 2.3E-07 44.0 2.9 24 23-46 21-44 (151)
413 TIGR00235 udk uridine kinase. 95.6 0.014 3.1E-07 47.5 3.9 26 18-43 3-28 (207)
414 PF05729 NACHT: NACHT domain 95.6 0.011 2.3E-07 45.6 3.0 21 24-44 3-23 (166)
415 PRK13543 cytochrome c biogenes 95.6 0.024 5.2E-07 46.4 5.2 22 23-44 39-60 (214)
416 PRK03839 putative kinase; Prov 95.6 0.011 2.4E-07 46.9 3.1 22 23-44 2-23 (180)
417 COG0050 TufB GTPases - transla 95.6 0.05 1.1E-06 46.9 7.0 115 20-140 11-145 (394)
418 TIGR01360 aden_kin_iso1 adenyl 95.6 0.011 2.4E-07 46.9 3.0 22 22-43 4-25 (188)
419 cd00820 PEPCK_HprK Phosphoenol 95.6 0.012 2.5E-07 43.2 2.8 20 23-42 17-36 (107)
420 PRK06731 flhF flagellar biosyn 95.5 0.013 2.9E-07 50.0 3.6 112 22-137 76-225 (270)
421 PF03205 MobB: Molybdopterin g 95.5 0.012 2.7E-07 45.2 3.0 22 23-44 2-23 (140)
422 PRK13695 putative NTPase; Prov 95.5 0.012 2.7E-07 46.5 3.1 22 22-43 1-22 (174)
423 KOG0448|consensus 95.5 0.083 1.8E-06 50.1 8.9 119 19-140 107-278 (749)
424 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.5 0.013 2.9E-07 47.9 3.3 22 23-44 32-53 (218)
425 PRK10646 ADP-binding protein; 95.5 0.068 1.5E-06 41.8 7.0 22 23-44 30-51 (153)
426 PRK13949 shikimate kinase; Pro 95.4 0.014 3E-07 46.3 3.2 21 23-43 3-23 (169)
427 PF02367 UPF0079: Uncharacteri 95.4 0.03 6.4E-07 42.1 4.7 22 23-44 17-38 (123)
428 PRK02496 adk adenylate kinase; 95.4 0.015 3.2E-07 46.4 3.3 23 22-44 2-24 (184)
429 TIGR00960 3a0501s02 Type II (G 95.4 0.015 3.2E-07 47.6 3.3 22 23-44 31-52 (216)
430 PRK14273 phosphate ABC transpo 95.4 0.038 8.2E-07 46.4 5.8 22 23-44 35-56 (254)
431 PRK14241 phosphate transporter 95.4 0.038 8.1E-07 46.6 5.8 23 23-45 32-54 (258)
432 PRK00300 gmk guanylate kinase; 95.4 0.014 3E-07 47.3 3.0 22 23-44 7-28 (205)
433 cd03225 ABC_cobalt_CbiO_domain 95.4 0.016 3.4E-07 47.2 3.3 22 23-44 29-50 (211)
434 PRK14237 phosphate transporter 95.4 0.035 7.6E-07 47.1 5.6 23 23-45 48-70 (267)
435 cd03226 ABC_cobalt_CbiO_domain 95.3 0.016 3.4E-07 47.1 3.3 22 23-44 28-49 (205)
436 KOG0464|consensus 95.3 0.01 2.3E-07 53.2 2.2 89 16-104 32-136 (753)
437 PRK14267 phosphate ABC transpo 95.3 0.039 8.3E-07 46.3 5.7 22 23-44 32-53 (253)
438 PRK14532 adenylate kinase; Pro 95.3 0.015 3.3E-07 46.5 3.0 22 23-44 2-23 (188)
439 KOG0467|consensus 95.3 0.051 1.1E-06 52.1 6.8 110 17-134 5-135 (887)
440 TIGR01166 cbiO cobalt transpor 95.3 0.015 3.3E-07 46.5 3.1 22 23-44 20-41 (190)
441 cd03213 ABCG_EPDR ABCG transpo 95.3 0.038 8.2E-07 44.6 5.3 22 23-44 37-58 (194)
442 TIGR03608 L_ocin_972_ABC putat 95.3 0.017 3.7E-07 46.8 3.3 22 23-44 26-47 (206)
443 cd01428 ADK Adenylate kinase ( 95.3 0.013 2.9E-07 46.8 2.6 22 23-44 1-22 (194)
444 PTZ00088 adenylate kinase 1; P 95.3 0.018 4E-07 48.0 3.5 25 20-44 5-29 (229)
445 cd02023 UMPK Uridine monophosp 95.3 0.015 3.3E-07 46.9 3.0 21 24-44 2-22 (198)
446 PLN02200 adenylate kinase fami 95.3 0.026 5.6E-07 47.2 4.3 26 18-43 40-65 (234)
447 TIGR00073 hypB hydrogenase acc 95.3 0.019 4.1E-07 46.9 3.5 27 18-44 19-45 (207)
448 cd03261 ABC_Org_Solvent_Resist 95.3 0.017 3.8E-07 47.9 3.3 22 23-44 28-49 (235)
449 cd03269 ABC_putative_ATPase Th 95.3 0.018 3.9E-07 46.9 3.3 22 23-44 28-49 (210)
450 PRK08233 hypothetical protein; 95.2 0.017 3.6E-07 45.6 3.0 23 22-44 4-26 (182)
451 PRK05480 uridine/cytidine kina 95.2 0.019 4.1E-07 46.8 3.4 25 20-44 5-29 (209)
452 cd03265 ABC_DrrA DrrA is the A 95.2 0.018 4E-07 47.2 3.3 22 23-44 28-49 (220)
453 cd03264 ABC_drug_resistance_li 95.2 0.016 3.6E-07 47.2 3.0 22 23-44 27-48 (211)
454 PRK10867 signal recognition pa 95.2 0.062 1.3E-06 49.0 6.9 64 69-135 183-252 (433)
455 TIGR02315 ABC_phnC phosphonate 95.2 0.018 3.9E-07 47.9 3.3 22 23-44 30-51 (243)
456 TIGR02673 FtsE cell division A 95.2 0.019 4.1E-07 46.9 3.3 22 23-44 30-51 (214)
457 cd03292 ABC_FtsE_transporter F 95.2 0.019 4.1E-07 46.8 3.3 22 23-44 29-50 (214)
458 cd03259 ABC_Carb_Solutes_like 95.2 0.019 4.1E-07 46.9 3.3 22 23-44 28-49 (213)
459 PRK13541 cytochrome c biogenes 95.2 0.019 4.1E-07 46.3 3.3 23 23-45 28-50 (195)
460 PRK14235 phosphate transporter 95.2 0.042 9.1E-07 46.6 5.6 22 23-44 47-68 (267)
461 cd03218 ABC_YhbG The ABC trans 95.2 0.019 4E-07 47.5 3.3 22 23-44 28-49 (232)
462 PRK13646 cbiO cobalt transport 95.2 0.036 7.7E-07 47.6 5.1 22 23-44 35-56 (286)
463 PRK14257 phosphate ABC transpo 95.2 0.043 9.3E-07 48.2 5.7 23 23-45 110-132 (329)
464 TIGR03797 NHPM_micro_ABC2 NHPM 95.2 0.029 6.4E-07 54.0 5.1 35 23-68 481-515 (686)
465 KOG1487|consensus 95.2 0.063 1.4E-06 45.5 6.3 81 21-104 59-147 (358)
466 PRK14531 adenylate kinase; Pro 95.2 0.019 4.1E-07 45.9 3.2 23 22-44 3-25 (183)
467 cd03262 ABC_HisP_GlnQ_permease 95.2 0.02 4.2E-07 46.7 3.3 22 23-44 28-49 (213)
468 PF01637 Arch_ATPase: Archaeal 95.2 0.016 3.5E-07 47.1 2.8 24 22-45 21-44 (234)
469 COG0396 sufC Cysteine desulfur 95.2 0.028 6E-07 46.8 4.1 36 24-68 33-68 (251)
470 PRK14249 phosphate ABC transpo 95.2 0.048 1E-06 45.7 5.7 23 23-45 32-54 (251)
471 cd03257 ABC_NikE_OppD_transpor 95.1 0.019 4.2E-07 47.2 3.2 22 23-44 33-54 (228)
472 PRK14248 phosphate ABC transpo 95.1 0.046 1E-06 46.3 5.6 22 23-44 49-70 (268)
473 TIGR01186 proV glycine betaine 95.1 0.034 7.3E-07 49.6 4.9 22 23-44 21-42 (363)
474 PHA00729 NTP-binding motif con 95.1 0.021 4.5E-07 47.5 3.4 23 22-44 18-40 (226)
475 cd03224 ABC_TM1139_LivF_branch 95.1 0.02 4.2E-07 47.0 3.2 22 23-44 28-49 (222)
476 COG1125 OpuBA ABC-type proline 95.1 0.034 7.3E-07 47.1 4.5 18 24-41 30-47 (309)
477 COG1134 TagH ABC-type polysacc 95.1 0.031 6.8E-07 46.7 4.4 36 23-69 55-90 (249)
478 PRK14238 phosphate transporter 95.1 0.048 1E-06 46.4 5.7 23 23-45 52-74 (271)
479 TIGR02211 LolD_lipo_ex lipopro 95.1 0.021 4.5E-07 46.9 3.3 22 23-44 33-54 (221)
480 TIGR01313 therm_gnt_kin carboh 95.1 0.015 3.3E-07 45.3 2.5 21 24-44 1-21 (163)
481 COG0410 LivF ABC-type branched 95.1 0.019 4.1E-07 47.6 3.0 22 23-44 31-52 (237)
482 cd03293 ABC_NrtD_SsuB_transpor 95.1 0.021 4.5E-07 46.9 3.3 22 23-44 32-53 (220)
483 COG1117 PstB ABC-type phosphat 95.1 0.016 3.5E-07 47.7 2.6 19 24-42 36-54 (253)
484 cd03266 ABC_NatA_sodium_export 95.1 0.021 4.5E-07 46.8 3.3 22 23-44 33-54 (218)
485 PF13479 AAA_24: AAA domain 95.1 0.017 3.6E-07 47.5 2.7 22 20-41 2-23 (213)
486 PRK14268 phosphate ABC transpo 95.1 0.054 1.2E-06 45.7 5.9 23 23-45 40-62 (258)
487 COG1101 PhnK ABC-type uncharac 95.1 0.034 7.4E-07 45.9 4.4 22 24-45 35-56 (263)
488 cd03229 ABC_Class3 This class 95.1 0.022 4.8E-07 45.2 3.3 22 23-44 28-49 (178)
489 COG0802 Predicted ATPase or ki 95.1 0.068 1.5E-06 41.4 5.8 88 23-123 27-117 (149)
490 PRK13652 cbiO cobalt transport 95.1 0.042 9.2E-07 46.9 5.2 22 23-44 32-53 (277)
491 PRK15177 Vi polysaccharide exp 95.1 0.021 4.6E-07 46.8 3.3 22 23-44 15-36 (213)
492 PRK11629 lolD lipoprotein tran 95.1 0.022 4.7E-07 47.3 3.3 22 23-44 37-58 (233)
493 TIGR01351 adk adenylate kinase 95.1 0.018 3.9E-07 47.1 2.8 21 23-43 1-21 (210)
494 cd03216 ABC_Carb_Monos_I This 95.1 0.023 5.1E-07 44.5 3.3 22 23-44 28-49 (163)
495 PRK13540 cytochrome c biogenes 95.0 0.023 5E-07 46.0 3.3 22 23-44 29-50 (200)
496 cd03301 ABC_MalK_N The N-termi 95.0 0.023 5E-07 46.3 3.3 22 23-44 28-49 (213)
497 cd03263 ABC_subfamily_A The AB 95.0 0.023 5E-07 46.6 3.3 22 23-44 30-51 (220)
498 cd03256 ABC_PhnC_transporter A 95.0 0.022 4.9E-07 47.3 3.3 22 23-44 29-50 (241)
499 PRK11248 tauB taurine transpor 95.0 0.022 4.8E-07 48.1 3.3 22 23-44 29-50 (255)
500 PRK05541 adenylylsulfate kinas 95.0 0.027 5.9E-07 44.5 3.6 27 18-44 4-30 (176)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.5e-37 Score=245.42 Aligned_cols=160 Identities=39% Similarity=0.647 Sum_probs=150.4
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccC
Q psy5781 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (231)
Q Consensus 14 ~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 93 (231)
++...++.|||+++||+|||||+|+.||.++.|.+.|..|+|+||..++++++|+.++|+||||+||++|+.+...|||+
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCC-cccccc--ccchh
Q psy5781 94 ANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMP-FPQVWP--CLKFG 166 (231)
Q Consensus 94 ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~-~~ev~~--~~nv~ 166 (231)
|+|+|+|||+| ||+++..|+.++++......+.+++|||.|+...+.....+.. .+...+.+ +.|+++ ..||+
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 99999999999 9999999999999999999999999999999998887766664 78888888 889888 67999
Q ss_pred hhhhhhc
Q psy5781 167 HAFSTSL 173 (231)
Q Consensus 167 e~f~~~~ 173 (231)
++|.+.+
T Consensus 162 ~~F~~la 168 (205)
T KOG0084|consen 162 DAFLTLA 168 (205)
T ss_pred HHHHHHH
Confidence 9999987
No 2
>KOG0078|consensus
Probab=100.00 E-value=5.3e-34 Score=228.10 Aligned_cols=159 Identities=38% Similarity=0.613 Sum_probs=150.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
.++++.+||+++||+|||||+|+.||..+.|...+..|+|+||..+++.+++..+.++||||+||++|+.+...||+.|+
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhh
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
+++||||++ ||+++..|++.|.++.++..+.+++|||.|+...+.+.....+ .+...|..|.|+++ +.|++|+|
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 999999999 9999999999999999999999999999999997776555555 88899999999999 78999999
Q ss_pred hhhcc
Q psy5781 170 STSLA 174 (231)
Q Consensus 170 ~~~~~ 174 (231)
.+.+.
T Consensus 167 ~~La~ 171 (207)
T KOG0078|consen 167 LSLAR 171 (207)
T ss_pred HHHHH
Confidence 98873
No 3
>KOG0094|consensus
Probab=100.00 E-value=4e-34 Score=225.52 Aligned_cols=157 Identities=25% Similarity=0.372 Sum_probs=144.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
...+.+|+|+||+.+|||||||+||+.+.|...|.+|||+||..+++.+.+..++|++|||+|||+|+.+.+.|+|++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCc-ceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKY-KFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~-~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
+|+|||++ ||++..+|++++++..+.+ .++.++|||.||...+++...+.+ .+++.+..+.|+++ ..||.+.|
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999 9999999999999998875 778899999999999888776666 67777777888877 78999999
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 178 rrIa 181 (221)
T KOG0094|consen 178 RRIA 181 (221)
T ss_pred HHHH
Confidence 8866
No 4
>KOG0092|consensus
Probab=100.00 E-value=2.9e-33 Score=220.39 Aligned_cols=155 Identities=32% Similarity=0.477 Sum_probs=146.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+|||+||+.+||||||+.||..++|.+...||+|.-|.++++.+++..+++.||||+||++|+.+.+.|||+|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
+|||+| ||..++.|.++|++..+++.++.++|||.||.+.++....+.. .+.+.+..+-|.+. ..|+++.|...
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 999999 9999999999999999988999999999999998888777766 78888888999888 78999999887
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 163 a 163 (200)
T KOG0092|consen 163 A 163 (200)
T ss_pred H
Confidence 7
No 5
>KOG0087|consensus
Probab=100.00 E-value=5.9e-33 Score=221.51 Aligned_cols=161 Identities=35% Similarity=0.565 Sum_probs=149.6
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc
Q psy5781 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92 (231)
Q Consensus 13 ~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 92 (231)
....+.++.|||+++||++||||-|+.||..++|..+..+|+|++|.++++.++++.++.+||||+||++|+.+...||+
T Consensus 6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchh
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFG 166 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~ 166 (231)
.|.|++||||+| +|+++.+|+++|+.+.+...++.++|||.||.+.+.+...+.. .+.+.++.|.|+++ ..||+
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence 999999999999 9999999999999999999999999999999997766555444 78888899999988 77999
Q ss_pred hhhhhhc
Q psy5781 167 HAFSTSL 173 (231)
Q Consensus 167 e~f~~~~ 173 (231)
++|.+.+
T Consensus 166 ~aF~~~l 172 (222)
T KOG0087|consen 166 KAFERVL 172 (222)
T ss_pred HHHHHHH
Confidence 9998876
No 6
>KOG0098|consensus
Probab=100.00 E-value=2.1e-32 Score=214.21 Aligned_cols=157 Identities=34% Similarity=0.559 Sum_probs=145.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.+.+.+|++++||.|||||+|+.||++++|.+.++.|+|++|..+.+.+++++++|+||||+|++.|+++...||+.|.|
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
+|||||++ ||..+..|+.++++....+.++.++|||.|+...+.+...+.+ .+.+-++.+.|.++ ..|++|+|-
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999 9999999999999999999999999999999998866555555 77788888888888 678999997
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 162 nta 164 (216)
T KOG0098|consen 162 NTA 164 (216)
T ss_pred HHH
Confidence 755
No 7
>KOG0080|consensus
Probab=99.98 E-value=1.2e-31 Score=205.40 Aligned_cols=158 Identities=34% Similarity=0.510 Sum_probs=137.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
......+||++||++|||||||+.+|+.+.|.+....|+|+||..+...++|..+++.||||+||++|+.+.+.||+.|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 45677899999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcCCcce-eeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhh
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFDKYKF-GHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~-~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
|+|+|||+| +|.++..|++++..++.+..+ .++++||+|-...+.++-.+.. .+.+.+.-|.|.++ +.||...
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 999999999 999999999999999876544 7889999997765655433333 66777777777776 6677777
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|+..+
T Consensus 166 Feelv 170 (209)
T KOG0080|consen 166 FEELV 170 (209)
T ss_pred HHHHH
Confidence 76544
No 8
>KOG0095|consensus
Probab=99.97 E-value=1e-31 Score=203.61 Aligned_cols=159 Identities=38% Similarity=0.619 Sum_probs=135.6
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
++++...|||+++|..|||||+|++||..+-|++-...|+|++|..++++++|++++|+||||+||++|+++.+.||+.|
T Consensus 1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhh
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
+++|||||++ ||+-+.+|+.+|.++.......+++|||+|+...++......+ .++.-..-+.|.++ ..||+..
T Consensus 81 halilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 9999999999 9999999999999999999999999999999877664222211 23223333344433 4567777
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|...+
T Consensus 161 f~~~a 165 (213)
T KOG0095|consen 161 FLDLA 165 (213)
T ss_pred HHHHH
Confidence 76655
No 9
>KOG0079|consensus
Probab=99.97 E-value=2.3e-31 Score=201.26 Aligned_cols=156 Identities=35% Similarity=0.548 Sum_probs=133.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
.+.+..+|.+++||+|||||||+.+|..+.|...|.-|+|+|+..+++.++|..++|+|||++|++.|+.+...||+..+
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhh
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
++|+|||+| ||.++.+|+++++..++ .....++|||.|.+..+.++-.+.. .+...+..+-|.+. ..||+..|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 999999999 99999999999999998 5567799999999887765444433 44444555555544 45566655
Q ss_pred hhh
Q psy5781 170 STS 172 (231)
Q Consensus 170 ~~~ 172 (231)
-+.
T Consensus 162 ~ci 164 (198)
T KOG0079|consen 162 HCI 164 (198)
T ss_pred HHH
Confidence 443
No 10
>KOG0394|consensus
Probab=99.97 E-value=1.2e-30 Score=204.04 Aligned_cols=157 Identities=27% Similarity=0.448 Sum_probs=136.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.+...+||+++||+|||||||+++|++++|..+|..|||.+|-++.+.++++.+.|+||||+||++|.++.-.+||++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCc----ceeeecccccCCCCCccccccch--h--hhhhcCCCcccccc--cc
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKY----KFGHAFSTSLAMPQVRPCLFHKF--G--HASSSAMPFPQVWP--CL 163 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~----~~~~vv~~k~dl~~~~~~~~~~~--~--~s~~~~~~~~ev~~--~~ 163 (231)
.+||||++ ||+++..|.+++....... -+-+++|||+|+.....+..... . ...+...+..|+++ ..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 99999999 9999999999998776533 33568899999987543322222 2 56667778888887 67
Q ss_pred chhhhhhhhc
Q psy5781 164 KFGHAFSTSL 173 (231)
Q Consensus 164 nv~e~f~~~~ 173 (231)
||+++|++.+
T Consensus 165 NV~~AFe~ia 174 (210)
T KOG0394|consen 165 NVDEAFEEIA 174 (210)
T ss_pred cHHHHHHHHH
Confidence 8999998866
No 11
>KOG0086|consensus
Probab=99.97 E-value=1.5e-30 Score=197.86 Aligned_cols=160 Identities=35% Similarity=0.611 Sum_probs=142.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccC
Q psy5781 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (231)
Q Consensus 14 ~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 93 (231)
+++++++.+|++++|+.|.|||+|+++|+.++|.++...|+|++|..+.+++.++.++|+||||+||++|++..+.||+.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhh
Q psy5781 94 ANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGH 167 (231)
Q Consensus 94 ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e 167 (231)
|-+.+||||+| ||+.+..|+.+++...+...++++.|+|.|+..++++.+.+.. .+...-..+.|.+. ..||+|
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999 9999999999999999999999999999999999998776655 22222223444444 678999
Q ss_pred hhhhhc
Q psy5781 168 AFSTSL 173 (231)
Q Consensus 168 ~f~~~~ 173 (231)
+|-.++
T Consensus 162 aFl~c~ 167 (214)
T KOG0086|consen 162 AFLKCA 167 (214)
T ss_pred HHHHHH
Confidence 996654
No 12
>KOG0093|consensus
Probab=99.96 E-value=4.8e-29 Score=188.47 Aligned_cols=161 Identities=31% Similarity=0.491 Sum_probs=144.1
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc
Q psy5781 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92 (231)
Q Consensus 13 ~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 92 (231)
+..+.-++.+|++++|++.||||||+.||+++.|...+..|.|++|..+++.-..+.++++||||+|++.|+.+...|++
T Consensus 13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093|consen 13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence 33455678889999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchh
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFG 166 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~ 166 (231)
.++|+|||||++ ||..++.|.-.|+.++..+..+++++||.|+...+........ .+...|..+-|.+. ++||+
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk 172 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK 172 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence 999999999999 9999999999999999999999999999999988775444433 67777777778777 77888
Q ss_pred hhhhhhc
Q psy5781 167 HAFSTSL 173 (231)
Q Consensus 167 e~f~~~~ 173 (231)
.+|+..+
T Consensus 173 ~~Fe~lv 179 (193)
T KOG0093|consen 173 QVFERLV 179 (193)
T ss_pred HHHHHHH
Confidence 8887755
No 13
>KOG0091|consensus
Probab=99.96 E-value=7.8e-30 Score=195.90 Aligned_cols=155 Identities=32% Similarity=0.528 Sum_probs=142.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEE-CCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
.++||++||||+-||||||++.|..++|.+-.+||+|+||+.+.+++ +|..++|++|||+||++|+++.+.||++.-|+
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 47899999999999999999999999999999999999999998888 68899999999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcC-Cc-ceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFD-KY-KFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~-~~-~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
++|||++ ||+.++.|.++...+.. +. .+-.++|.|.||...+++...+.+ .++..++.+.|.+. ..||+|+|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 9999999 99999999999988776 44 446788999999999988887777 89999999999988 77999999
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 166 ~mla 169 (213)
T KOG0091|consen 166 DMLA 169 (213)
T ss_pred HHHH
Confidence 8876
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=1.3e-28 Score=199.46 Aligned_cols=155 Identities=30% Similarity=0.482 Sum_probs=134.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
.++.+||+++|+.|||||||+.+|.++.|...+.++++.++....+.+++..+.++|||++|+++|..+++.|++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 55779999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
|||||++ ||+++..|++++.+..+ ..+++++|||.|+...+.....+.. .+...+..+.|+++ ..|++++|..
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 9999999 99999999999987664 5667899999999876554433332 45556667778876 6788888887
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 162 l~ 163 (189)
T cd04121 162 LA 163 (189)
T ss_pred HH
Confidence 66
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=1.4e-28 Score=201.20 Aligned_cols=152 Identities=34% Similarity=0.523 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+.|+++|+.|||||||++||..+.|.++|.+|++.++..+.+.++++.+.++|||++|+++|+.++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhh-cCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASS-SAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~-~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ ||+++..|+..+.+......++++++||.|+...+........ .+.. .+..+.|+++ ..|++++|...+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 999 9999999999998877667778899999999765443222221 1222 1344556655 556777775544
No 16
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=8.3e-28 Score=193.68 Aligned_cols=154 Identities=17% Similarity=0.293 Sum_probs=127.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
+...+||+++|++|||||||+++|+.+.|.++|.||++.++ .+.+.+++..+.++||||+|+++|..+++.+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45679999999999999999999999999999999998655 46788899999999999999999999999999999999
Q ss_pred EEEEecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCC------------ccccccchh-hhhhcCC-Ccccc
Q psy5781 98 IIEVTSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQV------------RPCLFHKFG-HASSSAM-PFPQV 159 (231)
Q Consensus 98 IlV~dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~------------~~~~~~~~~-~s~~~~~-~~~ev 159 (231)
|||||++ ||+++ ..|++++++..+ ..+.+++|||.|+..+ ++....+.. .+...+. .+.|+
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 9999999 99998 799999998765 4667799999998642 122222222 4555663 67788
Q ss_pred cc--ccc-hhhhhhhhc
Q psy5781 160 WP--CLK-FGHAFSTSL 173 (231)
Q Consensus 160 ~~--~~n-v~e~f~~~~ 173 (231)
++ ..| ++++|....
T Consensus 160 SAk~~~n~v~~~F~~~~ 176 (182)
T cd04172 160 SALQSENSVRDIFHVAT 176 (182)
T ss_pred CcCCCCCCHHHHHHHHH
Confidence 77 566 888887654
No 17
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=8.9e-28 Score=192.52 Aligned_cols=150 Identities=22% Similarity=0.337 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+.+|+.+.|..+|.||++..+ .+.+.+++..+.+.||||+|+++|+.++..+++++|++||||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999999999998665 466788999999999999999999999999999999999999
Q ss_pred ecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCCcc----------ccccch-hhhhhcCC-Ccccccc--cc
Q psy5781 102 TSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP----------CLFHKF-GHASSSAM-PFPQVWP--CL 163 (231)
Q Consensus 102 dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~----------~~~~~~-~~s~~~~~-~~~ev~~--~~ 163 (231)
|++ ||+++ ..|++++.+..+ +.+++++|||.|+...+. ....+. ..+.+.+. .+.|+++ ..
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 999 99998 689999987754 566789999999965431 211111 14555555 4778876 67
Q ss_pred chhhhhhhhc
Q psy5781 164 KFGHAFSTSL 173 (231)
Q Consensus 164 nv~e~f~~~~ 173 (231)
|++++|...+
T Consensus 160 nV~~~F~~~~ 169 (176)
T cd04133 160 NVKAVFDAAI 169 (176)
T ss_pred CHHHHHHHHH
Confidence 8999998876
No 18
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.95 E-value=6.2e-27 Score=184.86 Aligned_cols=153 Identities=33% Similarity=0.614 Sum_probs=130.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|..+.|...+.+|++.++..+.+.+++..+.+.|||++|++++..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ ||+.+..|++++........+.++++||.|+...+.....+.. .+...+..+.+++. ..|++++|...+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999 9999999999998877667778899999999876554333322 34444556666665 677888886654
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=5.3e-27 Score=188.28 Aligned_cols=151 Identities=17% Similarity=0.278 Sum_probs=124.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|+++.|..+|.||++.++ .+.+.+++..+.+.||||+|++.|..+++.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999999999998665 46788899999999999999999999999999999999999
Q ss_pred EecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCC------------ccccccchh-hhhhcCC-Ccccccc-
Q psy5781 101 VTSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQV------------RPCLFHKFG-HASSSAM-PFPQVWP- 161 (231)
Q Consensus 101 ~dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~------------~~~~~~~~~-~s~~~~~-~~~ev~~- 161 (231)
||++ ||+++ ..|++++++..+ ..+.+++|||.|+..+ ++....+.. .+...+. .+.|+++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 9999 99996 799999998775 4567799999998642 122222222 5555564 5777777
Q ss_pred -ccc-hhhhhhhhc
Q psy5781 162 -CLK-FGHAFSTSL 173 (231)
Q Consensus 162 -~~n-v~e~f~~~~ 173 (231)
..| ++++|...+
T Consensus 159 ~~~~~v~~~F~~~~ 172 (178)
T cd04131 159 TSEKSVRDIFHVAT 172 (178)
T ss_pred cCCcCHHHHHHHHH
Confidence 344 889887765
No 20
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=5.6e-27 Score=188.77 Aligned_cols=151 Identities=22% Similarity=0.341 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||++||+++.|.++|.||+|.++..+.+.+++..+.+.|||++|+++|..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 59999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC-----ccccccc-hhhhhhcCCCcccccc--ccchhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV-----RPCLFHK-FGHASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~-----~~~~~~~-~~~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
|++ ||+++..|+.++.+......+ ++++||.|+... ....... ...+...+..+.++++ ..|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999 999999999999887655444 578999998532 1111111 1134445555666665 678888887
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 160 ~l~ 162 (182)
T cd04128 160 IVL 162 (182)
T ss_pred HHH
Confidence 765
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=9.7e-27 Score=193.93 Aligned_cols=154 Identities=14% Similarity=0.244 Sum_probs=127.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||++||+.|||||||+++|+.+.|.++|.||++.++. ..+.+++..+.+.||||+|++.|..+++.|++++|++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 356799999999999999999999999999999999997664 5688899999999999999999999999999999999
Q ss_pred EEEEecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCC------------ccccccchh-hhhhcCC-Ccccc
Q psy5781 98 IIEVTSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQV------------RPCLFHKFG-HASSSAM-PFPQV 159 (231)
Q Consensus 98 IlV~dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~------------~~~~~~~~~-~s~~~~~-~~~ev 159 (231)
|||||++ ||+++ ..|++++.+..+ ..+++++|||.|+..+ ++....+.. .+.+.+. .+.|+
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et 167 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC 167 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence 9999999 99985 899999998765 4456799999998642 222222222 5566666 47788
Q ss_pred ccc--c-chhhhhhhhc
Q psy5781 160 WPC--L-KFGHAFSTSL 173 (231)
Q Consensus 160 ~~~--~-nv~e~f~~~~ 173 (231)
++. . |++++|...+
T Consensus 168 SAktg~~~V~e~F~~~~ 184 (232)
T cd04174 168 SAFTSEKSIHSIFRSAS 184 (232)
T ss_pred cCCcCCcCHHHHHHHHH
Confidence 773 3 6899998765
No 22
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=1.1e-26 Score=188.39 Aligned_cols=151 Identities=22% Similarity=0.317 Sum_probs=122.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+.||+.+.|.++|.||++.++ .+.+.++++.+.++||||+|+++|+.+++.|++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999999999999555 45677899999999999999999999999999999999999
Q ss_pred EecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCcc------------ccccch-hhhhhcC-CCcccccc-
Q psy5781 101 VTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRP------------CLFHKF-GHASSSA-MPFPQVWP- 161 (231)
Q Consensus 101 ~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~------------~~~~~~-~~s~~~~-~~~~ev~~- 161 (231)
||++ ||+++. .|.+++.+..+ ..+++++|||.|+..... ....+. ..+...+ ..+.|+++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999 999996 69998887654 566789999999975432 100111 1233344 35667765
Q ss_pred -ccchhhhhhhhc
Q psy5781 162 -CLKFGHAFSTSL 173 (231)
Q Consensus 162 -~~nv~e~f~~~~ 173 (231)
..|++++|...+
T Consensus 161 ~g~~v~e~f~~l~ 173 (191)
T cd01875 161 NQDGVKEVFAEAV 173 (191)
T ss_pred CCCCHHHHHHHHH
Confidence 568888887766
No 23
>KOG0088|consensus
Probab=99.94 E-value=1e-27 Score=183.36 Aligned_cols=155 Identities=27% Similarity=0.432 Sum_probs=140.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
-+...||||++|..-||||||+.||+.++|..+...|+...|..+.+++.+....|.||||+||++|..+-+-||+..|+
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 35678999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
++|||||| ||+.++.|..+++..+.+..-.+++|||+|+...+.+.-.+.+ .+.+.|....+.++ +.++.|+|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 99999999 9999999999999999999999999999999998887766665 66777777778777 556778886
Q ss_pred h
Q psy5781 171 T 171 (231)
Q Consensus 171 ~ 171 (231)
.
T Consensus 169 ~ 169 (218)
T KOG0088|consen 169 S 169 (218)
T ss_pred H
Confidence 4
No 24
>KOG0097|consensus
Probab=99.94 E-value=5.2e-27 Score=176.65 Aligned_cols=159 Identities=32% Similarity=0.612 Sum_probs=145.1
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
.-.+.+.||.+++||-|||||+|+++|..++|..+-+.|+|++|..+.+++.|++++++||||.||++|+...+.||+.+
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhh
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
.+.++|||++ ++..+..|+.+.+....+.-++++++||.|+...+.+.+.+.. .+..-|+.|.|.+. ..||+.+
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 9999999999 9999999999999998899999999999999999888877766 67777888888776 5688888
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|-..+
T Consensus 165 fle~a 169 (215)
T KOG0097|consen 165 FLETA 169 (215)
T ss_pred HHHHH
Confidence 85543
No 25
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.94 E-value=3.2e-26 Score=180.32 Aligned_cols=152 Identities=35% Similarity=0.537 Sum_probs=129.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|+++.|.+.+.||++.++..+.+.+++..+.+.|||++|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999999999999998888888999998999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ ||+.+..|++++.+......+.++++||.|+...++....+.. .+...+..+.|++. ..|++++|...+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999 9999999999998877667778899999999765543222222 44445566777766 667888887654
No 26
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.94 E-value=4.3e-26 Score=180.36 Aligned_cols=155 Identities=38% Similarity=0.604 Sum_probs=129.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
++.+||+++|++|||||||+++|.++.|...+.||++.++..+.+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999999999999998888888889998899999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
+|||++ +|+.+..|+..+.+......+.++++||.|+...+.....+.. .+...+.++.+++. ..|++++|...
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999 9999999999999877667778899999999865443322221 34444556666666 45677777654
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 161 ~ 161 (167)
T cd01867 161 A 161 (167)
T ss_pred H
Confidence 4
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=4.4e-26 Score=181.73 Aligned_cols=152 Identities=23% Similarity=0.289 Sum_probs=127.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|+.+.|...+.||++..+ ...+.+++..+.+.|||++|++++..+++.+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 48999999999999999999999999999999998444 46678899999999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ ||+++..|...+.+... ...+.++++||.|+...+.....+.. .+...+..+.|++. ..|++++|...+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999 99999999999887653 45668899999999766544332222 44455667777766 778999998776
No 28
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.94 E-value=4.3e-26 Score=178.82 Aligned_cols=151 Identities=29% Similarity=0.489 Sum_probs=134.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|++|||||||+++|.++.|.+++.||++.+...+.+.+++..+.++|||++|++++..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 103 SV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
++ ||+++..|++.+.+..+...+.+++|+|.|+...+.....+.. .+...+.++.|++. ..|+.++|...+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i 157 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELI 157 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHH
Confidence 99 9999999999999999977788899999999886665544433 56666788888887 567888887654
No 29
>KOG0081|consensus
Probab=99.94 E-value=1.4e-28 Score=188.28 Aligned_cols=171 Identities=29% Similarity=0.519 Sum_probs=148.1
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC---------CeEEEEEEeeCCCccccch
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID---------GKKVKLQIWDTAGQERFRT 85 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~---------~~~~~l~i~D~~G~~~~~~ 85 (231)
+.++++.+|.+.+||+||||||++++|.+++|..+...|+|+||..+.+-++ ++.+.++||||+||++|++
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 4578899999999999999999999999999999999999999998888763 3678999999999999999
Q ss_pred hhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCccccc
Q psy5781 86 ITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVW 160 (231)
Q Consensus 86 ~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~ 160 (231)
+...++++|-+++|+||+| ||.+++.|+..++-..- +++-+++.|||.|+.+.+.+.-.... .+.+.+.+..|.+
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 9999999999999999999 99999999999976543 44556788999999988775443333 8899999999999
Q ss_pred cc--cchhhhhhhhc--cCCCcccccccc
Q psy5781 161 PC--LKFGHAFSTSL--AMPQVRPCLFHK 185 (231)
Q Consensus 161 ~~--~nv~e~f~~~~--~~~~~~~c~~~~ 185 (231)
+| .|++++.+..+ .|.|.+.|...+
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie~~v~~s 191 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIEQCVEKS 191 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 95 58999998865 777777776554
No 30
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.94 E-value=5.3e-26 Score=180.97 Aligned_cols=152 Identities=31% Similarity=0.459 Sum_probs=125.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|++|||||||+++|+++.|.++|.||++.++..+.+.+++..+.++|||++|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 89999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCCccccccc---hhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 103 SV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQVRPCLFHK---FGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~~~~~~~~---~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
++ +++.+..|++++.+.. ++..+.++++||.|+.........+ ...+...+..+.+++. ..|++++|...+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 98 8999999999987654 4455678999999986543311111 1133444455566665 678888887765
Q ss_pred c
Q psy5781 174 A 174 (231)
Q Consensus 174 ~ 174 (231)
.
T Consensus 162 ~ 162 (170)
T cd04108 162 A 162 (170)
T ss_pred H
Confidence 3
No 31
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=8.3e-26 Score=184.35 Aligned_cols=152 Identities=28% Similarity=0.443 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC-CeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
+||+++|++|||||||+++|+++.|...+.||++.++..+.+.++ +..+.+.|||++|++.+..+++.++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 699999999999999999999999999999999999988888887 8899999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcC----CcceeeecccccCCCCCccccccchh-hhhhcC-CCcccccc--ccchhhhh
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSA-MPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~-~~~~ev~~--~~nv~e~f 169 (231)
||++ ||+++..|+.++.+... ...+.++++||.|+...+.....+.. .+...+ ..+.+++. ..|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 9999 99999999999876532 44567899999999743332222221 233333 35556555 56777777
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 161 ~~l~ 164 (201)
T cd04107 161 RFLV 164 (201)
T ss_pred HHHH
Confidence 7655
No 32
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.94 E-value=7.9e-26 Score=180.84 Aligned_cols=151 Identities=19% Similarity=0.275 Sum_probs=119.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|+++.|.+.|.||++.++. ..+.+++..+.+.|||++|+++|..++..+++++|++|||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999999999999986664 5677888899999999999999999999999999999999
Q ss_pred EecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCcc------------ccccchh-hhhhcC-CCcccccc-
Q psy5781 101 VTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRP------------CLFHKFG-HASSSA-MPFPQVWP- 161 (231)
Q Consensus 101 ~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~------------~~~~~~~-~s~~~~-~~~~ev~~- 161 (231)
||++ ||+++. .|+.++.+..+ ..+.++++||.|+..... ....+.. .+...+ ..+.|+++
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999 899996 69999987654 456779999999865421 1111111 222333 35666664
Q ss_pred -ccchhhhhhhhc
Q psy5781 162 -CLKFGHAFSTSL 173 (231)
Q Consensus 162 -~~nv~e~f~~~~ 173 (231)
..|++++|...+
T Consensus 159 tg~~v~~~f~~~~ 171 (175)
T cd01874 159 TQKGLKNVFDEAI 171 (175)
T ss_pred CCCCHHHHHHHHH
Confidence 678888887665
No 33
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=1.1e-25 Score=186.28 Aligned_cols=153 Identities=24% Similarity=0.373 Sum_probs=126.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++|+.+.|...+.||++.++....+..++..+.+.|||++|++.|..++..|++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999999999999999999999988888888888899999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
+|||++ ||+++..|++++.+... ..+.+++|||.|+.... ..........+.+..+.+++. ..|++++|...+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~~~-v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhhcc-CCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 999999 99999999999988764 45677999999986422 111111233444555666655 667888886655
No 34
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.94 E-value=1.3e-25 Score=177.21 Aligned_cols=152 Identities=32% Similarity=0.485 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||++++.+++|...+.||++.++....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999999999999998888888888888899999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccc-hhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHK-FGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~-~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ +|+.+..|++++.+......+.++++||.|+...+...... ...+...+.++.+++. ..|++++|...+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999 99999999999988776677788999999997654322111 1134444555666655 557777776654
No 35
>KOG0083|consensus
Probab=99.94 E-value=1.5e-27 Score=177.83 Aligned_cols=149 Identities=31% Similarity=0.522 Sum_probs=135.7
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEec
Q psy5781 25 VLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTS 103 (231)
Q Consensus 25 vvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~di 103 (231)
+++||+++|||+|+-||..+.|. ....+|+|+||..+.+.+++.+++++||||.||++|++....||+++|+++|+||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999999999985 46789999999999999999999999999999999999999999999999999999
Q ss_pred C---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 104 V---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 104 t---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
+ ||++++.|+.+|.++........++|||.|+.+.+.+.-.+.+ .++..+.+|.|.+. .+||+.+|-..+
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence 9 9999999999999999998889999999999877665544444 88889999999988 788999997766
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=2.1e-25 Score=178.08 Aligned_cols=155 Identities=29% Similarity=0.470 Sum_probs=126.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC----------CeEEEEEEeeCCCccccchhhh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID----------GKKVKLQIWDTAGQERFRTITQ 88 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~----------~~~~~l~i~D~~G~~~~~~~~~ 88 (231)
++.+||+++|++|||||||+++|.++.|...+.+|++.++....+.++ +..+.+.|||++|++++..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999999999999988887766654 4678999999999999999999
Q ss_pred hcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--
Q psy5781 89 SYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP-- 161 (231)
Q Consensus 89 ~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~-- 161 (231)
.+++++|++|+|||++ ||+++..|+.++..... ...+.++++||.|+...++....+. ..+...+.++.+++.
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 9999999999999999 99999999999987653 3455778999999976544332222 244455566677766
Q ss_pred ccchhhhhhhhc
Q psy5781 162 CLKFGHAFSTSL 173 (231)
Q Consensus 162 ~~nv~e~f~~~~ 173 (231)
..|++++|...+
T Consensus 162 ~~~v~~l~~~l~ 173 (180)
T cd04127 162 GTNVEKAVERLL 173 (180)
T ss_pred CCCHHHHHHHHH
Confidence 567888877654
No 37
>PLN03110 Rab GTPase; Provisional
Probab=99.93 E-value=2.6e-25 Score=183.70 Aligned_cols=157 Identities=34% Similarity=0.588 Sum_probs=132.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
+.++.+||+++|++|||||||+++|+++.|..++.||++.++..+.+.+++..+.+.|||++|++++..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35578999999999999999999999999988899999999998999999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
+|+|||++ +|+++..|+..+.+......+.++++||.|+...+........ .+...+.++.+++. ..|++++|.
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999998 9999999999999887777788899999998665443221222 44455566666665 566777776
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 168 ~l~ 170 (216)
T PLN03110 168 TIL 170 (216)
T ss_pred HHH
Confidence 654
No 38
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.93 E-value=1.8e-25 Score=182.74 Aligned_cols=119 Identities=21% Similarity=0.379 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC-----CeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-----GKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
+||+++|++|||||||+++|+++.|.+.+.||++.++..+.+.++ ++.+.++|||++|+++|..++..|++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 699999999999999999999999999999999988887777774 578999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhc-------------------CCcceeeecccccCCCCCcc
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLF-------------------DKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~-------------------~~~~~~~vv~~k~dl~~~~~ 140 (231)
+|+|||++ ||+++..|+.++.+.. ....+++++|||.|+...+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 99999999 9999999999997642 23466889999999976543
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.93 E-value=3.6e-25 Score=174.48 Aligned_cols=153 Identities=38% Similarity=0.642 Sum_probs=128.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|+++.|...+.+|.+.++..+.+.+++..+.+.|||++|++++..++..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999999888999999888888889999899999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ ||+++..|+.++.+......+.++++||.|+.........+.. .+...+.++.+++. ..|+.+.|...+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 9999 9999999999998877666678899999998765543322222 34444556666665 567888876654
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=3.7e-25 Score=173.66 Aligned_cols=152 Identities=22% Similarity=0.424 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|++++|...+.||++.++..+.+.+++..+.++|||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 59999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcC-----CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFD-----KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~-----~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
|++ +|+.+..|+.++.+... ...+.++++||.|+............ .....+..+.+++. ..|++++|.
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999 89999999999998875 35668899999998743322222221 23334455566655 566777776
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 161 ~l~ 163 (168)
T cd04119 161 TLF 163 (168)
T ss_pred HHH
Confidence 543
No 41
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.93 E-value=4.3e-25 Score=174.95 Aligned_cols=150 Identities=25% Similarity=0.436 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|+.+.|...+.||++.++....+..++..+.+.+||++|++++..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 69999999999999999999999999999999998888888888888999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ ||+++..|+.++.+... ..+.++++||.|+.... ...............+.|++. ..|++++|...+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDRK-VKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccccc-CCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 999 99999999999998876 56677999999997322 111111133334445666666 667888887765
No 42
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=3.1e-25 Score=183.89 Aligned_cols=150 Identities=16% Similarity=0.290 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+|||++|||||||+.+|..+.|.++|.||++.++. ..+.++++.+.|.||||+|++.|..+++.+++++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999999999986654 67888999999999999999999999999999999999999
Q ss_pred ecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCCcc------------ccccch-hhhhhcC-CCcccccc--
Q psy5781 102 TSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP------------CLFHKF-GHASSSA-MPFPQVWP-- 161 (231)
Q Consensus 102 dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~------------~~~~~~-~~s~~~~-~~~~ev~~-- 161 (231)
|++ ||+++ ..|..++....+ ..+.+++|||.|+..+.. ....+. ..+...+ ..+.|.++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~-~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCP-NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999 99999 578888766554 456778999999965321 111111 1455555 37888877
Q ss_pred ccc-hhhhhhhhc
Q psy5781 162 CLK-FGHAFSTSL 173 (231)
Q Consensus 162 ~~n-v~e~f~~~~ 173 (231)
..| ++++|....
T Consensus 160 ~~~~V~~~F~~~~ 172 (222)
T cd04173 160 SERSVRDVFHVAT 172 (222)
T ss_pred CCcCHHHHHHHHH
Confidence 354 889997755
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.93 E-value=3.9e-25 Score=182.37 Aligned_cols=152 Identities=24% Similarity=0.350 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECC-eEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDG-KKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
+||+++|++|||||||+++|+++.|...|.||++.+++.+.+.+++ ..+.+.|||++|++.+..++..|++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 6999999999999999999999999999999999999888888865 579999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcCC---cceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhh
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFDK---YKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~~---~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
||++ ||+++..|+..+.+.... ..+.++++||.|+...++....... .+...+..+.++++ ..|++++|..
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 9999 999999999999987643 3457789999999755443222211 33334444555554 5667777766
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 161 l~ 162 (215)
T cd04109 161 LA 162 (215)
T ss_pred HH
Confidence 55
No 44
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=5.8e-25 Score=177.31 Aligned_cols=152 Identities=34% Similarity=0.557 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|.++.|...+.||++.++..+.+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998889999998888888899988999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ +|+++..|+.++.+......+.++++||.|+............ .+...+.++.+++. ..|++++|...+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999 9999999999999887777778899999999865443222211 33344556667765 567888777655
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.93 E-value=5.6e-25 Score=173.10 Aligned_cols=154 Identities=34% Similarity=0.573 Sum_probs=128.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
+.+||+++|++|||||||++++.++.|...+.||++.++..+.+..++..+.+.+||++|++++..+++.++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999998899999999988899999988999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|||++ +|+++..|+.++.+......+.++++||.|+...+.....+.. .+...+..+.+++. ..|++++|...+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99998 9999999999999988777788899999998765432222211 33334455666655 566777776543
No 46
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=4e-25 Score=181.96 Aligned_cols=178 Identities=28% Similarity=0.464 Sum_probs=139.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEE-CCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
+.+||+++|++|||||||+++|+++.|...+.||++.++..+.+.+ ++..+.++|||++|++.+..++..+++++|++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 3699999999999999999999999999989999999998888887 567899999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCC-cceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhhhhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDK-YKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
+|||++ ||+++..|+.++.+.... ..+.++++||.|+...+.....+. ..+...+..+.|++. ..|++++|..
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 999999 999999999999877654 445678999999976544333222 245555566777665 6788888887
Q ss_pred hccCCCcccccccccccCCCCCCCCCCcccccccc
Q psy5781 172 SLAMPQVRPCLFHKFGHASSSAMPFPQVWPCLKFG 206 (231)
Q Consensus 172 ~~~~~~~~~c~~~~~~~~~~~a~p~~~~~~~~~~~ 206 (231)
.+.. +..+ ..-..++.+..|--.+.|
T Consensus 161 l~~~-----~~~~----~~~~~~~~~~~~~~~~~~ 186 (211)
T cd04111 161 LTQE-----IYER----IKRGELCALDGWDGVKSG 186 (211)
T ss_pred HHHH-----HHHH----hhcCCCCccccccccccC
Confidence 7621 1111 112236677777655544
No 47
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=8.8e-25 Score=172.24 Aligned_cols=155 Identities=47% Similarity=0.724 Sum_probs=126.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
++.+||+++|++|||||||++++..+.|...+.+|.+.++..+.+.+++..+.+.|||++|++.+..++..+++++|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35799999999999999999999999999989999998888888899988899999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCC-Ccccccc--ccchhhhhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAM-PFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~-~~~ev~~--~~nv~e~f~~ 171 (231)
+|||++ ||+.+..|+..+........+.++++||.|+...++....... .+...+. .+.+++. ..|++++|..
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999 8999999999998876666778899999999765543332222 2333332 3455554 5567777765
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 161 l~ 162 (165)
T cd01864 161 MA 162 (165)
T ss_pred HH
Confidence 43
No 48
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.93 E-value=8.7e-25 Score=178.20 Aligned_cols=155 Identities=35% Similarity=0.572 Sum_probs=126.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
++..+||+++|++|||||||+++|.++.|...+.||++.++..+.+.+++..+.+.|||++|++.+..++..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 34579999999999999999999999999988999999899888888889889999999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
|+|||++ ||+.+..|++.+....+ ..+.++++||.|+.........+.. .+...+..+.+++. ..|++++|..
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 9999998 99999999999877654 4455688999998765443222221 33344555666655 6678888866
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 162 l~ 163 (199)
T cd04110 162 IT 163 (199)
T ss_pred HH
Confidence 44
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.93 E-value=6.1e-25 Score=172.12 Aligned_cols=152 Identities=24% Similarity=0.359 Sum_probs=122.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|+.+.|...+.||++ +.+.+.+.+++..+.+.|||++|+++|..++..|++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999999999999997 56667788899999999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ +|+++..|+.++.+... ...+.++++||.|+...+........ .+...+.++.+++. ..|++++|...+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999 89999999999987654 34567789999998764432222111 33333455666665 567888776654
No 50
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.93 E-value=1.4e-24 Score=171.71 Aligned_cols=155 Identities=29% Similarity=0.510 Sum_probs=124.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.|...+.++++.++..+.+.+++..+.+.|||++|++++..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999999998999999888888888999999999999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcC----CcceeeecccccCCCCCccccccchh-hhhhcC-CCcccccc--ccchh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSA-MPFPQVWP--CLKFG 166 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~-~~~~ev~~--~~nv~ 166 (231)
|+|||++ ||+.+..|+.++.+... ...+.++++||.|+.. +.....+.. .+.+.+ ..+.+++. ..|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-cccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 9999999 89999999999987654 3346778999999863 222111111 233333 24555555 66778
Q ss_pred hhhhhhc
Q psy5781 167 HAFSTSL 173 (231)
Q Consensus 167 e~f~~~~ 173 (231)
++|...+
T Consensus 161 ~~~~~~~ 167 (170)
T cd04116 161 AAFEEAV 167 (170)
T ss_pred HHHHHHH
Confidence 8777654
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.93 E-value=1.2e-24 Score=172.25 Aligned_cols=154 Identities=32% Similarity=0.560 Sum_probs=128.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
++.+||+++|++|||||||+++++++.+...+.+|.+.++..+.+.+++..+.+.|||++|++++..++..+++++|++|
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999999999989999998998888899998899999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
+|||++ ||+++..|+.++++......+.++++||.|+.........+.. .....+..+.+++. ..|+++.|.-.
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999998 9999999999998877666778899999998754433222222 34445556666654 55677777543
No 52
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.93 E-value=8.5e-25 Score=174.71 Aligned_cols=150 Identities=23% Similarity=0.326 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+.+|+.+.|.++|.||++ +.+...+.+++..+.+.||||+|++.+..+++.+++++|++||||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999999999999997 455567788999999999999999999999999999999999999
Q ss_pred ecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCcc------------ccccchh-hhhhcC-CCcccccc--
Q psy5781 102 TSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRP------------CLFHKFG-HASSSA-MPFPQVWP-- 161 (231)
Q Consensus 102 dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~------------~~~~~~~-~s~~~~-~~~~ev~~-- 161 (231)
|++ ||+++. .|+..+....+ ..+.++++||.|+..... ....+.. .+...+ ..+.|+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999 999995 69998877654 567778999999964321 1111111 233333 24566664
Q ss_pred ccchhhhhhhhc
Q psy5781 162 CLKFGHAFSTSL 173 (231)
Q Consensus 162 ~~nv~e~f~~~~ 173 (231)
..|++++|...+
T Consensus 160 ~~~i~~~f~~l~ 171 (174)
T cd01871 160 QKGLKTVFDEAI 171 (174)
T ss_pred cCCHHHHHHHHH
Confidence 667888877654
No 53
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.93 E-value=7.2e-25 Score=172.14 Aligned_cols=152 Identities=26% Similarity=0.352 Sum_probs=123.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|+.+.|.+.+.||++ +++...+.+++..+.++|||++|+++|..++..|++++|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999998999987 66677888899899999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ ||+++..|+..+.+... ...+.++++||.|+.........+.. .+...+.++.+++. ..|++++|...+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999 89999999999988654 45567789999998654433222211 33334445555554 567888887654
No 54
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.92 E-value=8e-25 Score=178.81 Aligned_cols=145 Identities=23% Similarity=0.389 Sum_probs=122.7
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--
Q psy5781 27 IGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-- 104 (231)
Q Consensus 27 lG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-- 104 (231)
+|++|||||||+++|+.+.|.+.|.||+|.++..+.+.+++..+.+.|||++|+++|..++..|++++|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred -cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 105 -EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 105 -Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||+++..|+.++.+... ..++++++||.|+... .........+...+..+.|+++ ..|++++|...+
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~~-~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKDR-KVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccc-cCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999998764 5667799999998642 2222222234455666777766 678888888776
No 55
>PLN03108 Rab family protein; Provisional
Probab=99.92 E-value=2e-24 Score=177.59 Aligned_cols=156 Identities=32% Similarity=0.538 Sum_probs=129.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
.++.+||+++|++|||||||+++|+.+.|...+.||++.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999999999988999999999888899999999999999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
|+|||++ +|+++..|+..+.+......+.++++||.|+...+.....+.. .+...+..+.+++. ..|++++|..
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999 9999999999988777667778899999999765543322222 33444555666655 5677777755
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 163 l~ 164 (210)
T PLN03108 163 TA 164 (210)
T ss_pred HH
Confidence 43
No 56
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=1.8e-24 Score=168.70 Aligned_cols=152 Identities=23% Similarity=0.309 Sum_probs=122.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|+++.|...+.||.+..+ .+.+.+++..+.+.+||++|++++..++..|++++|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999999999999998544 56778888889999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ +|+++..|+..+.+... ...+.++++||.|+.................+.++.+++. ..|++++|...+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999 89999999999988764 3556778999999876322111111234445556666665 567888887654
No 57
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=1.4e-24 Score=170.78 Aligned_cols=152 Identities=23% Similarity=0.335 Sum_probs=122.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|+.+.|.+.+.||++..+ .+.+.+++..+.+.||||+|++++..+++.+++++|++|+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999999999999999998554 46788888899999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ +|+.+..|+..+.+... ...+.++++||.|+........... ..+...+.++.+++. ..|++++|...+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9998 89999999999987643 4556789999999976443222211 133444555666665 567777776654
No 58
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.92 E-value=2.5e-24 Score=170.79 Aligned_cols=153 Identities=33% Similarity=0.525 Sum_probs=126.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc-hhhhhcccCCcEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-TITQSYYRSANGVII 99 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~ad~vIl 99 (231)
.+||+++|++|||||||+++|+.+.|...+.++++.++..+.+.+++..+.+.|||++|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999998899999999998899999999999999999999887 578999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCccccccc-----cchhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWPC-----LKFGHAF 169 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~~-----~nv~e~f 169 (231)
|||++ +|+.+..|+.++.+... ...+.++++||.|+...+........ .+...+..+.|++.. .|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 99999 99999999999988754 45667899999999876554332222 344445666666653 3677777
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 162 ~~l~ 165 (170)
T cd04115 162 MTLA 165 (170)
T ss_pred HHHH
Confidence 6654
No 59
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.92 E-value=1.8e-24 Score=182.21 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|+++.|...|.||++ +++.+.+.++++.+.++||||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 6899999999999999999999999999999997 777788899999999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhc---------CCcceeeecccccCCCCCccccccchhhh--hhcCCCcccccc--ccch
Q psy5781 102 TSV---EYCYQRNWHKQAVTLF---------DKYKFGHAFSTSLAMPQVRPCLFHKFGHA--SSSAMPFPQVWP--CLKF 165 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~---------~~~~~~~vv~~k~dl~~~~~~~~~~~~~s--~~~~~~~~ev~~--~~nv 165 (231)
|++ ||+++..|++++.+.. ....+.++++||.|+...+.....+.... ...+..+.+++. ..|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999 9999999999997652 23566789999999976444333332211 112344666665 6688
Q ss_pred hhhhhhhcc
Q psy5781 166 GHAFSTSLA 174 (231)
Q Consensus 166 ~e~f~~~~~ 174 (231)
+++|...+.
T Consensus 160 ~elf~~L~~ 168 (247)
T cd04143 160 DEMFRALFS 168 (247)
T ss_pred HHHHHHHHH
Confidence 888877663
No 60
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.92 E-value=2.5e-24 Score=168.58 Aligned_cols=151 Identities=26% Similarity=0.415 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC--CeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID--GKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
+||+++|++|||||||+++|.++.|...+.||++.++..+.+.++ +..+.+.|||++|++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999999999999988877777777 778999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|||++ +|+.+..|+..+.+... ..+.++++||.|+.........+.. .....+.++.+++. ..|++++|...+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99998 99999999999987664 4556799999999765443322222 34455666666665 567888877654
No 61
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=2.8e-24 Score=168.50 Aligned_cols=152 Identities=34% Similarity=0.591 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.|||++|++.+..+++.+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 69999999999999999999999999999999998888888899998999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ +|+++..|+.++........+.++++||.|+.........+.. .....+..+.+++. ..|+++.|...+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999 9999999999998877777788899999999764433222221 34444455566655 556777765543
No 62
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.1e-24 Score=176.17 Aligned_cols=150 Identities=24% Similarity=0.299 Sum_probs=122.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|++|||||||+++|+.+.|...+.||++..+ .+.+.+++..+.++||||+|+++|..++..|++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 699999999999999999999999999999998544 4667788888999999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhcC---CcceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 103 SV---EYCYQRNWHKQAVTLFD---KYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~~---~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
++ ||+++..|+..+.+... ...+.++++||.|+...+....... ..+...+..+.++++ ..|++++|...+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99 99999999999987654 3556778999999975444322221 133444556677765 678888888876
No 63
>PTZ00369 Ras-like protein; Provisional
Probab=99.92 E-value=2.5e-24 Score=173.98 Aligned_cols=153 Identities=23% Similarity=0.323 Sum_probs=123.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||+++|+++.|...+.||++..+ .+.+.+++..+.+.||||+|+++|..++..|++.+|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 359999999999999999999999999999999998555 5778889999999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcCC-cceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFDK-YKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|||++ +|+++..|+..+.+.... ..+.++++||.|+...++....+. ......+.++.++++ ..|++++|...
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 99999 999999999999877543 445778999999865543222111 123334455566655 56777777665
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 163 ~ 163 (189)
T PTZ00369 163 V 163 (189)
T ss_pred H
Confidence 4
No 64
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=2.7e-24 Score=169.24 Aligned_cols=149 Identities=24% Similarity=0.411 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|+.+.|.+.+.++.+.+++...+.+++..+.+++|||+|++.|..+++.+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 59999999999999999999999999988899888888778888999999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ +++++..|+.++.+..+ ..+.++++||.|+..... ..........+.++.+++. ..|++++|...+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPSVT--QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchhHH--HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 998 99999999999987654 456679999999853211 1111122333445555555 556777777654
No 65
>PLN00023 GTP-binding protein; Provisional
Probab=99.92 E-value=3e-24 Score=184.97 Aligned_cols=124 Identities=20% Similarity=0.356 Sum_probs=109.9
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC-------------CeEEEEEEeeCCCcc
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-------------GKKVKLQIWDTAGQE 81 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~-------------~~~~~l~i~D~~G~~ 81 (231)
.......+||+|+|+.|||||||+++|+++.|...+.||+|.++..+.+.++ ++.+.++|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 3445678999999999999999999999999999999999999888877774 257899999999999
Q ss_pred ccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC------------CcceeeecccccCCCCC
Q psy5781 82 RFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD------------KYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 82 ~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~------------~~~~~~vv~~k~dl~~~ 138 (231)
+|+.++..|+++++++|+|||++ ||+++..|++++.+... ...++++++||.|+...
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999 99999999999988742 23567899999999654
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=3.8e-24 Score=173.23 Aligned_cols=152 Identities=36% Similarity=0.584 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
+||+++|++|||||||+++|.++.|. ..+.+|++.++....+.+++..+.+.|||++|++++..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 69999999999999999999999986 47889999888877888899999999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ +|+++..|+..+.+......+.++++||.|+...+.....+. ..+...+.++.+++. ..|++++|...+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999 899999999999988777777889999999965433221111 234445556666666 567788777655
No 67
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=3.6e-24 Score=173.12 Aligned_cols=149 Identities=19% Similarity=0.314 Sum_probs=119.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|++|||||||+++|.++.|...+.||++.++ ...+.+++..+.+.|||++|+++|..++..+++++|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 899999999999999999999999999999998655 4567788888999999999999999999999999999999999
Q ss_pred cC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCcccc------------ccc-hhhhhhcC-CCcccccc--c
Q psy5781 103 SV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCL------------FHK-FGHASSSA-MPFPQVWP--C 162 (231)
Q Consensus 103 it---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~------------~~~-~~~s~~~~-~~~~ev~~--~ 162 (231)
++ ||+++. .|+.++..... ..+.++++||.|+...+... ..+ ...+...+ ..+.|+++ .
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99 899986 69999987654 45678999999997654311 000 11222222 34666665 5
Q ss_pred cchhhhhhhhc
Q psy5781 163 LKFGHAFSTSL 173 (231)
Q Consensus 163 ~nv~e~f~~~~ 173 (231)
.|++++|...+
T Consensus 160 ~~v~e~f~~l~ 170 (189)
T cd04134 160 RGVNEAFTEAA 170 (189)
T ss_pred CCHHHHHHHHH
Confidence 68888887655
No 68
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=3.9e-24 Score=174.13 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHHcC-----CCCCCcccceee-EEEEEE--------EEECCeEEEEEEeeCCCccccch
Q psy5781 21 LFKVVLIGDCGVGKTCVVH-RFRSG-----DFVEKTGNTIGV-DFSMKT--------VNIDGKKVKLQIWDTAGQERFRT 85 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~-~~~~~-----~f~~~~~pt~~~-~~~~~~--------~~~~~~~~~l~i~D~~G~~~~~~ 85 (231)
.+||+++|+.|||||||+. ++.++ .|..+|.||++. +.+... +.++++.+.+.||||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999996 66544 356778999963 433322 25789999999999999976 3
Q ss_pred hhhhcccCCcEEEEEEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCC-------------------cccc
Q psy5781 86 ITQSYYRSANGVIIEVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQV-------------------RPCL 142 (231)
Q Consensus 86 ~~~~~~~~ad~vIlV~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~-------------------~~~~ 142 (231)
+...+++++|++|+|||++ ||+++. .|++++.+..+ ..++++++||.|+... ++..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 5678999999999999999 999997 69999987764 4567799999998642 2222
Q ss_pred ccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 143 FHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 143 ~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
..+.. .+.+.+..+.|+++ ..|++++|...+
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~ 192 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHH
Confidence 22222 56667777888877 678999998765
No 69
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=6.8e-24 Score=168.57 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=121.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
+++.+||+++|++|||||||+++|+++.|. .+|.||++.++..+.+.+++..+.+.+||++|++.+..++..|++++|+
T Consensus 1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 357899999999999999999999999998 8899999988887888889988999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccc-hhhhhhcCC-Ccccccc--ccchhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHK-FGHASSSAM-PFPQVWP--CLKFGHAF 169 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~-~~~s~~~~~-~~~ev~~--~~nv~e~f 169 (231)
+++|||++ +|+.+..|+..+.. ....+.++++||.|+.......... ...+...+. .+.+++. ..|++++|
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 99999998 88889899987643 2356788999999996543221111 112333333 2344544 55788888
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 159 ~~l~ 162 (169)
T cd01892 159 TKLA 162 (169)
T ss_pred HHHH
Confidence 7765
No 70
>KOG0395|consensus
Probab=99.91 E-value=1.9e-24 Score=175.83 Aligned_cols=158 Identities=23% Similarity=0.310 Sum_probs=139.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+|+|.+|||||+|+.+|+.+.|.++|.||++ +.+.+.+.++++.+.+.|+||+|++++..+...|+++++|+++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999999 8888999999999999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcCCcc-eeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFDKYK-FGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~~~~-~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
||+++ ||+.+..+++.|.+...... +.+++|||.|+...+.....+.. .+...+..+.|++. ..|++++|...
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999 99999999999977777655 58899999999987665555433 56667777888887 56799999888
Q ss_pred ccCCCc
Q psy5781 173 LAMPQV 178 (231)
Q Consensus 173 ~~~~~~ 178 (231)
.-+.+.
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 755554
No 71
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.91 E-value=7.6e-24 Score=175.37 Aligned_cols=111 Identities=29% Similarity=0.444 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|+.+.|.. +.||++.+++...+ ..+.+.|||++|++.|..++..|++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999975 68999877764433 4688999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|++ ||+++..|+..+.+......+.++++||.|+..
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999 999999998888876666677889999999875
No 72
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.91 E-value=1.3e-23 Score=165.82 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|+++.|...+.||++..+ ...+..++..+.+.+||++|++++..++..+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999988999987444 455667778899999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcC---CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFD---KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~---~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|++ ||+++..|+..+.+... ...+.++++||.|+...+........ .+...+..+.|+++ ..|++++|...
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 999 99999999988877653 44567789999999764432221111 23333445666665 66788888776
Q ss_pred cc
Q psy5781 173 LA 174 (231)
Q Consensus 173 ~~ 174 (231)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 53
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.91 E-value=1.1e-23 Score=171.85 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=121.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch--------hhhhcccC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT--------ITQSYYRS 93 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~~ 93 (231)
+||+|+|++|||||||+++|+++.|...+.||.+.+++...+.++++.+.+.||||+|.+.+.. ....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 6999999999999999999999999999999998787777788899999999999999754321 23456789
Q ss_pred CcEEEEEEecC---cHhhHHHHHHHHHHhc---CCcceeeecccccCCCCCccccccchh-hhh-hcCCCcccccc--cc
Q psy5781 94 ANGVIIEVTSV---EYCYQRNWHKQAVTLF---DKYKFGHAFSTSLAMPQVRPCLFHKFG-HAS-SSAMPFPQVWP--CL 163 (231)
Q Consensus 94 ad~vIlV~dit---Sf~~l~~w~~~i~~~~---~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~-~~~~~~~ev~~--~~ 163 (231)
+|++|+|||++ ||+.+..|++.+.+.. ....+.++++||.|+...+.....+.. ..+ ..+.++.+++. ..
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 99999999999 9999999999998876 355678899999999765443322222 222 33566777776 77
Q ss_pred chhhhhhhhc
Q psy5781 164 KFGHAFSTSL 173 (231)
Q Consensus 164 nv~e~f~~~~ 173 (231)
|++++|...+
T Consensus 161 ~v~~lf~~i~ 170 (198)
T cd04142 161 HILLLFKELL 170 (198)
T ss_pred CHHHHHHHHH
Confidence 8899998877
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.91 E-value=1.6e-23 Score=164.50 Aligned_cols=151 Identities=23% Similarity=0.351 Sum_probs=120.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeEEEEEEEEEC-CeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~--~f~~~~~pt~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
+||+++|++|||||||++++..+ .|..++.||.+.++..+.+.++ +..+.+.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 59999999999999999999965 7889999999989887777775 67899999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccc-hhhhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHK-FGHASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~-~~~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
+|||++ +|+++..|++.+.... ...+.++++||.|+.......... .......+.++.+++. ..+++++|...
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 999999 8999999999988765 446677899999986554322211 1133344555566665 55677777654
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 160 ~ 160 (164)
T cd04101 160 A 160 (164)
T ss_pred H
Confidence 4
No 75
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.91 E-value=1.4e-23 Score=164.90 Aligned_cols=151 Identities=25% Similarity=0.374 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|+++.+...+.||.+ +.+.+.+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5999999999999999999999999998999987 455567778888999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCC-cceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDK-YKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ +|+++..|...+.+.... ..+.++++||.|+...+........ .....+.++.+++. ..|++++|...+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 999 899999999998876543 4566789999999765442222211 33444455666655 567788776654
No 76
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.91 E-value=2.4e-23 Score=162.82 Aligned_cols=151 Identities=26% Similarity=0.392 Sum_probs=124.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++++++.+...+.|+.+.++..+.+.+++..+.+.+||++|++++..++..+++++|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998889999999999899999988899999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|++ +|+.+..|+..+........+.++++||.|+............ .....+..+.+++. ..|+++.|...
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999 8999999999998776666778899999999654443333322 33344444555544 55677766544
No 77
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=1.8e-23 Score=164.58 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+.+|+.+.|...+.|+.+ .+ .+.+.++++.+.+.|||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999999888777654 44 57788999999999999999975 35678999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCC--Cccccccchh-hhhhc-CCCcccccc--ccchhhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQ--VRPCLFHKFG-HASSS-AMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~--~~~~~~~~~~-~s~~~-~~~~~ev~~--~~nv~e~f~~ 171 (231)
|++ ||+++..|++++.+... ...++++++||.|+.. .++....+.. .+... +..+.|+++ ..|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 999 99999999999988764 4456779999988853 2332222211 23232 356777766 6789999877
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 154 ~~ 155 (158)
T cd04103 154 AA 155 (158)
T ss_pred HH
Confidence 65
No 78
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=3.2e-23 Score=162.50 Aligned_cols=152 Identities=24% Similarity=0.345 Sum_probs=122.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|+++.+...+.||.+.. +.....+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4899999999999999999999999988899998844 456677888889999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ +|+.+..|+..+.+... ...+.++++||.|+........... ..+...+..+.+++. ..|++++|...+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 9999 99999999999987654 3456778999999976544322222 234444556667765 667888887654
No 79
>KOG0393|consensus
Probab=99.91 E-value=1.8e-24 Score=173.69 Aligned_cols=118 Identities=25% Similarity=0.402 Sum_probs=107.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC-CeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
...+|++||||.+||||+|+..|..+.|+++|.||+. |.+...+.++ |+.+.+.+|||+||++|+.+++..|.++|+|
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999997 7777889995 9999999999999999999999999999999
Q ss_pred EEEEecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 98 IIEVTSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 98 IlV~dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
++||++. ||+++ .+|+++++++++..+++ ++|+|.||..+
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpii-LVGtk~DLr~d 124 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPII-LVGTKADLRDD 124 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEE-EEeehHHhhhC
Confidence 9999999 99998 48999999999666554 88999999853
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=3.7e-23 Score=164.53 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|.++.|..++.||.. +.+...+.+++..+.++|||++|++++..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 6999999999999999999999999999999985 566667888888899999999999999999999999999999999
Q ss_pred ecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCC------------ccccccchh-hhhhcCC-Ccccccc--
Q psy5781 102 TSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQV------------RPCLFHKFG-HASSSAM-PFPQVWP-- 161 (231)
Q Consensus 102 dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~------------~~~~~~~~~-~s~~~~~-~~~ev~~-- 161 (231)
|++ ||+++. .|+..+.+... ..+.++++||.|+... +++...+.. .+...+. .+.+++.
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999 899885 79988886543 4567899999998642 122111111 2333333 5666664
Q ss_pred ccchhhhhhhh
Q psy5781 162 CLKFGHAFSTS 172 (231)
Q Consensus 162 ~~nv~e~f~~~ 172 (231)
..|++++|...
T Consensus 159 ~~~v~~lf~~~ 169 (173)
T cd04130 159 QKNLKEVFDTA 169 (173)
T ss_pred CCCHHHHHHHH
Confidence 67778877654
No 81
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.90 E-value=5.1e-23 Score=161.16 Aligned_cols=152 Identities=39% Similarity=0.623 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||++++.+..+...+.++++.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 69999999999999999999999998888999998888888899998899999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ +++.+..|+.++........+..+++||.|+...+........ .....+..+.+++. ..+++++|....
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999 9999999999999888777888899999998764432222221 33444555555555 446666665543
No 82
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.90 E-value=5.1e-23 Score=166.40 Aligned_cols=151 Identities=26% Similarity=0.378 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
+||+++|++|||||||+++|+++.|.. .|.+|++.++..+.+.+++..+.+.|||++|++++..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999974 7899999888888899999999999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc----cccccch-hhhhhcCCCcccccc--ccchhhhhh
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR----PCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~----~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
||++ +|+++..|++.+..... ..+.++++||.|+.... .....+. ..+...+..+.+++. ..|++++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9998 89999999999977543 45677999999985432 1111111 122333344555554 567888777
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 160 ~i~ 162 (193)
T cd04118 160 KVA 162 (193)
T ss_pred HHH
Confidence 765
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=5.5e-23 Score=161.13 Aligned_cols=153 Identities=29% Similarity=0.464 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.|||++|++++...+..+++++|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999888899999888888999999999999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||.+ +++.+..|+..+........+.++++||.|+.........+.. .....+..+.+++. ..|++++|...+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9998 8999999999998887666677889999998754433222221 34444555666655 456777776544
No 84
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.90 E-value=3.9e-23 Score=166.17 Aligned_cols=150 Identities=19% Similarity=0.300 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC-CeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
+||+|+|++|||||||+++|+++.|...+.||++.++. ..+..+ +..+.+.||||+|++++..+++.+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999999999999987664 345554 7889999999999999999999999999999999
Q ss_pred EecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCccc----cccc-hhhhhhcCC-Ccccccc--ccchhhh
Q psy5781 101 VTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRPC----LFHK-FGHASSSAM-PFPQVWP--CLKFGHA 168 (231)
Q Consensus 101 ~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~----~~~~-~~~s~~~~~-~~~ev~~--~~nv~e~ 168 (231)
||++ ||+++. .|+.++..... ..+.++++||.|+...... ...+ ...+...+. .+.+++. ..|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCP-GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999 899996 69988876543 4566799999998654311 1111 112333333 4555554 5677777
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|...+
T Consensus 159 f~~l~ 163 (187)
T cd04132 159 FDTAI 163 (187)
T ss_pred HHHHH
Confidence 76654
No 85
>PLN03118 Rab family protein; Provisional
Probab=99.90 E-value=9e-23 Score=167.70 Aligned_cols=158 Identities=33% Similarity=0.519 Sum_probs=123.1
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
.......+||+++|++|||||||+++|+++.+ ..+.|+.+.++....+.+++..+.+.|||++|++++..++..+++++
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 33445679999999999999999999999887 45889999888888888888889999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHH-HHHHHHHhcCC-cceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchh
Q psy5781 95 NGVIIEVTSV---EYCYQRN-WHKQAVTLFDK-YKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFG 166 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~-w~~~i~~~~~~-~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~ 166 (231)
|++|+|||++ +|+++.. |...+...... ..+.++++||.|+.........+.. .+...+..+.+++. ..|++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999 8999975 77777655433 3456788999998765443222221 33344455556655 56677
Q ss_pred hhhhhhc
Q psy5781 167 HAFSTSL 173 (231)
Q Consensus 167 e~f~~~~ 173 (231)
++|...+
T Consensus 167 ~l~~~l~ 173 (211)
T PLN03118 167 QCFEELA 173 (211)
T ss_pred HHHHHHH
Confidence 7777655
No 86
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.90 E-value=5.5e-23 Score=163.06 Aligned_cols=148 Identities=21% Similarity=0.361 Sum_probs=116.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEec
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTS 103 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~di 103 (231)
|+|+|++|||||||+++|.++.|...+.|+++..+ ...+.+++..+.+.+|||+|+++|..+++.+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999999999997544 46778889899999999999999999999999999999999999
Q ss_pred C---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCcc------------ccccc-hhhhhhcCC-Ccccccc--cc
Q psy5781 104 V---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRP------------CLFHK-FGHASSSAM-PFPQVWP--CL 163 (231)
Q Consensus 104 t---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~------------~~~~~-~~~s~~~~~-~~~ev~~--~~ 163 (231)
+ ||+++. .|+..+.+..+ ..+.++++||.|+..... ....+ ...+...+. .+.+++. ..
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9 899996 69999987654 566779999999875322 10000 113333433 5556654 56
Q ss_pred chhhhhhhhc
Q psy5781 164 KFGHAFSTSL 173 (231)
Q Consensus 164 nv~e~f~~~~ 173 (231)
|++++|...+
T Consensus 159 ~v~~lf~~l~ 168 (174)
T smart00174 159 GVREVFEEAI 168 (174)
T ss_pred CHHHHHHHHH
Confidence 7888877654
No 87
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=1.8e-22 Score=159.23 Aligned_cols=156 Identities=40% Similarity=0.666 Sum_probs=124.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||++++..+.+...+.+|++.++..+.+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999998888889999888888899999889999999999999999989999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
++|||++ +++.+..|+.++........+.++++||.|+...+....... .........+.+++. ..|++++|..
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 9999999 899999999999887766677789999999875443211111 112222233444443 5677777765
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 164 i~ 165 (169)
T cd04114 164 LA 165 (169)
T ss_pred HH
Confidence 44
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.89 E-value=2.9e-22 Score=156.86 Aligned_cols=151 Identities=36% Similarity=0.545 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|.++.+...+.|+++.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 69999999999999999999999998889999998888888888888899999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|++ +|+.+..|+..+.+... ...+.++++||.|+.................+.++.+++. ..|+++.+...
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 999 99999999999988865 3455788999999873221111111233444555555555 44566666543
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.89 E-value=1.9e-22 Score=167.22 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc-CCcEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR-SANGVII 99 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-~ad~vIl 99 (231)
+||+++|++|||||||+++|+.+.|. ..+.++.+.+++.+.+.+++..+.+.|||++|++ ......+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 69999999999999999999999987 7788888777888889999999999999999998 234456667 9999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|||++ ||+++..|+.++.+... ...+.++++||.|+...+.....+. ..+...+..+.+++. ..|++++|...
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999 99999999999987653 4566789999999876544322211 134444556667665 67888888887
Q ss_pred ccCCC
Q psy5781 173 LAMPQ 177 (231)
Q Consensus 173 ~~~~~ 177 (231)
+..-.
T Consensus 159 ~~~~~ 163 (221)
T cd04148 159 VRQIR 163 (221)
T ss_pred HHHHH
Confidence 74443
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.89 E-value=2.9e-22 Score=158.91 Aligned_cols=115 Identities=24% Similarity=0.383 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|..+.|...+.||++ +.+...+.+++..+.+.|||++|++.|..++..+++++|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5999999999999999999999999988999987 444567788888999999999999999999999999999999999
Q ss_pred ecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 102 TSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 102 dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
|++ +|+++. .|++.+... ....+.++++||.|+..+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcC
Confidence 999 899885 798888766 455667799999998654
No 91
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.89 E-value=1.1e-22 Score=160.33 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=119.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc-cchhhhhcccCCcEEEEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-FRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~ad~vIlV~ 101 (231)
||+++|++|||||||+++|+.+.|..++.|+.+..+ .+.+.+++..+.++|||++|++. +......+++++|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 699999999999999999999999888999886444 56678889899999999999985 3445678899999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhc--CCcceeeecccccCCCCCccccccch-hhhhhcCCCccccccc---cchhhhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLF--DKYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWPC---LKFGHAFSTS 172 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~--~~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~~---~nv~e~f~~~ 172 (231)
|++ ||+.+..|+..+.+.. ....+.++++||.|+...+.+...+. ..+...+.++.+++.. .|++++|...
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 999 9999999999998865 34566788999999876555443332 2444455667777763 3789988776
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 160 ~ 160 (165)
T cd04146 160 C 160 (165)
T ss_pred H
Confidence 5
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.89 E-value=4.4e-22 Score=155.24 Aligned_cols=151 Identities=30% Similarity=0.433 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++++++.+...+.++.+.++....+.+.+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 69999999999999999999999998888888877777777888888899999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|++ +++.+..|++++.+......+.++++||.|+....+....... .....+..+.+++. ..+++++|...
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999 8899999999999888777778899999998854432221111 23334444445444 45666666553
No 93
>KOG4252|consensus
Probab=99.89 E-value=1.6e-24 Score=169.04 Aligned_cols=162 Identities=22% Similarity=0.371 Sum_probs=140.5
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhc
Q psy5781 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSY 90 (231)
Q Consensus 11 ~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 90 (231)
++....+.+..+|++++|..+|||+|+|+||+.+-|.++|..|+|++|..+.+.++++.+++.+||++|+++++.+...|
T Consensus 10 ~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAy 89 (246)
T KOG4252|consen 10 MAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAY 89 (246)
T ss_pred CCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHH
Confidence 34456678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccc
Q psy5781 91 YRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLK 164 (231)
Q Consensus 91 ~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~n 164 (231)
|+.|.+.+|||+-| ||+.+.+|++++...+++.+. .++.||+|+..+-..+..+.+ .+.+....+..++. .+|
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPt-V~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~N 168 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPT-VFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFN 168 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCe-EEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 99999999999999 999999999999988766554 478999999987766555555 66666666666655 778
Q ss_pred hhhhhhhhc
Q psy5781 165 FGHAFSTSL 173 (231)
Q Consensus 165 v~e~f~~~~ 173 (231)
|-++|.-.+
T Consensus 169 V~~vF~YLa 177 (246)
T KOG4252|consen 169 VMHVFAYLA 177 (246)
T ss_pred hHHHHHHHH
Confidence 888886544
No 94
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.89 E-value=3.3e-22 Score=158.22 Aligned_cols=151 Identities=23% Similarity=0.319 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|.++.|...+.||++.. ..+.+.+++..+.++|||++|+++|..+++.+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 799999999999999999999999999899999844 4577788888899999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcC-CCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSA-MPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~-~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ +++.+..|.+.+.+... ...+.++++||.|+...+........ .....+ .++.++++ ..|++++|...+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 999 99999999999987654 34556689999998765433222111 222222 33445554 456777776654
No 95
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=5.1e-22 Score=163.62 Aligned_cols=156 Identities=24% Similarity=0.366 Sum_probs=123.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
+++...+||+++|++|||||||+++++.+.|...|.||++.++....+..++..+.+.+||++|++++..++..++++++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45566799999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhh
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
++|+|||++ +|..+..|+..+.+.... .+..+++||.|+..... ...........+..+.+++. ..++++.|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~i~lv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCEN-IPIVLVGNKVDVKDRQV-KARQITFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCEEEEEECccCccccC-CHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999 999999999999877643 44557899999864321 11111223334444555554 455677665
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 162 ~ia 164 (215)
T PTZ00132 162 WLA 164 (215)
T ss_pred HHH
Confidence 544
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.88 E-value=7.2e-22 Score=155.93 Aligned_cols=152 Identities=28% Similarity=0.498 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||++++.++.+...+.+|++.++..+.+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 59999999999999999999999998888999998888888899998999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcC----CcceeeecccccCCCCCccccccchh-hhhhcC-CCcccccc--ccchhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSA-MPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~-~~~~ev~~--~~nv~e~f~ 170 (231)
|++ +++++..|.+++...+. ...+..+++||.|+.....-...... .....+ ..+.+++. ..|++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 999 88999999998877664 24567789999999743221111111 222222 34444444 566777776
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 161 ~i~ 163 (172)
T cd01862 161 TIA 163 (172)
T ss_pred HHH
Confidence 543
No 97
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.88 E-value=3.4e-22 Score=158.04 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
.|+++|++|||||||+++|.++.+...+.||++.++ +.+++..+.+.+||++|+++++.++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 389999999999999999999999999999998543 2345566899999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 103 SV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
.+ +++.++.|+.++.+.. ...+.++++||.|+...+.
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~ 116 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARS 116 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCC
Confidence 99 7788888888886544 4566779999999876543
No 98
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.87 E-value=1.3e-21 Score=155.39 Aligned_cols=114 Identities=23% Similarity=0.393 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
.||+++|++|||||||+++|.++.|...|.||++..+. ..+.+++..+.+.||||+|++.|..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999999999999999985553 56788888899999999999999999889999999999999
Q ss_pred ecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 102 TSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 102 dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|++ +|+++. .|...+.+... ..+.++++||.|+..
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~ 119 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 119 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhccc
Confidence 999 888885 69888876544 456779999999865
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=4.6e-21 Score=148.09 Aligned_cols=151 Identities=39% Similarity=0.576 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|.+|||||||++++.++.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999888999999999888898888899999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|.+ +++.+..|+..+........+..+++||.|+.........+.. .....+..+.+++. ..+++++|...
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 998 8899999999999888667777899999999633222222221 23333445555544 34566666543
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=4.4e-21 Score=156.18 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=116.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|++|||||||+++|+++.+...+.+|.+ ++....+.+++..+.++|||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999999988888886 5666778888888999999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCC-ccccccchh-hhh-hcCCCcccccc--ccchhhhhhhhc
Q psy5781 103 SV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQV-RPCLFHKFG-HAS-SSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~-~~~~~~~~~-~s~-~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
++ +|+.+..|+..+.+... ...+.++++||.|+... ......... ... ..+..+.+++. ..|++++|...+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 99 99999999999988766 35667899999998653 221111110 111 11233444544 567777776654
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.86 E-value=1.4e-21 Score=156.17 Aligned_cols=115 Identities=23% Similarity=0.401 Sum_probs=95.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||+++|..+.|. .+.||++.++. .+.. ..+.+.|||++|++.+..++..|++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999988885 47899986654 3344 35889999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCCc
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~~ 139 (231)
|||++ +++++..|+..+.+.. ....+.++++||.|+....
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 130 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC
Confidence 99999 6888877777765432 2346678999999997643
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.86 E-value=4e-21 Score=151.08 Aligned_cols=112 Identities=23% Similarity=0.451 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||++++..+.|.. +.||++.++. .+.. ..+.+.+||++|++++..++..|++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999888874 8899986553 3444 3588999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHh-cCCcceeeecccccCCCCC
Q psy5781 102 TSV---EYCYQRNWHKQAVTL-FDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~-~~~~~~~~vv~~k~dl~~~ 138 (231)
|++ +++++..|+..+.+. .....+.++++||.|+...
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 999 788887777666432 2234567789999999653
No 103
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.86 E-value=8.5e-21 Score=148.38 Aligned_cols=151 Identities=25% Similarity=0.355 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++++.+.|...+.++.+. .+.+....++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 59999999999999999999999999999999874 44566778888999999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ +|+++..|+..+.+... ...+.++++||.|+........... ......+.++.+++. ..|+++.|...+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 998 89999999999988754 3566789999999876322111111 123334455666654 667777776543
No 104
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.86 E-value=1.1e-20 Score=152.40 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
.||+++|++|||||||++++..+.|.+.+.+|+...+ ...+.+++..+.+.+||++|++.+....+.+++++|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5999999999999999999999999888888887544 356677888899999999999998888888899999999999
Q ss_pred ecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCcc----------cccc-chhhhhhcC-CCcccccc--cc
Q psy5781 102 TSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRP----------CLFH-KFGHASSSA-MPFPQVWP--CL 163 (231)
Q Consensus 102 dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~----------~~~~-~~~~s~~~~-~~~~ev~~--~~ 163 (231)
|++ +|+.+. .|+..+.+..++ .++++++||.|+..+.. .... ....+...+ ..+.+++. ..
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~-~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPN-VPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCC-CCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999 899986 699999876654 66778999999854211 0000 111233333 24566654 67
Q ss_pred chhhhhhhhc
Q psy5781 164 KFGHAFSTSL 173 (231)
Q Consensus 164 nv~e~f~~~~ 173 (231)
|++++|...+
T Consensus 160 ~v~~~f~~l~ 169 (187)
T cd04129 160 GVDDVFEAAT 169 (187)
T ss_pred CHHHHHHHHH
Confidence 7888887765
No 105
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.86 E-value=2.2e-21 Score=153.99 Aligned_cols=113 Identities=25% Similarity=0.432 Sum_probs=93.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||++++..+.+.. +.||++.++. .+.. ..+.+.|||++|+++++.+++.+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999888864 7899986654 3333 45889999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCC
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~ 137 (231)
|||++ +|+++..|+.++.+.. ....+.++++||.|+..
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 99999 6888877776665432 24566889999999864
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=3.7e-21 Score=154.70 Aligned_cols=116 Identities=22% Similarity=0.420 Sum_probs=92.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++|..+.|.. +.||++.++. .+.. ..+.++|||++|+++++.++..|++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 456899999999999999999999888864 7899986553 3444 4588999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHh-cCCcceeeecccccCCCCCc
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTL-FDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~-~~~~~~~~vv~~k~dl~~~~ 139 (231)
+|||++ +++.+..|+..+... .....+.++++||.|+....
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 999999 555555555444321 12356678999999987643
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=8.7e-21 Score=149.86 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|.++.|...+.++.. ++ .....+++..+.+.|||++|++++...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999999876554433 33 344566778899999999999988888888899999999999
Q ss_pred ecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCcccc-ccchh--hhhhcC--CCcccccc--ccchhhhhh
Q psy5781 102 TSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCL-FHKFG--HASSSA--MPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 102 dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~-~~~~~--~s~~~~--~~~~ev~~--~~nv~e~f~ 170 (231)
|++ +|+.+. .|++.+++... ..+.++++||.|+....... ..+.. ...... .++.+++. ..|++++|.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 998 899885 68888877654 56677899999997654321 11110 111111 24555554 667888887
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 158 ~~~ 160 (166)
T cd01893 158 YAQ 160 (166)
T ss_pred HHH
Confidence 654
No 108
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.85 E-value=1.7e-20 Score=145.88 Aligned_cols=150 Identities=27% Similarity=0.372 Sum_probs=120.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|++|||||||+++++++.+...+.++.+ +...+.+..++..+.+++||++|++.+..++..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 799999999999999999999989999999988 5666777888888999999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 103 SV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
++ +++++..|...+.+... ...+.++++||.|+............ ...+.+.++.+++. ..|+.++|...+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Confidence 98 88899999999988776 56677899999998874443332222 33444445555555 456777766543
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.85 E-value=1.6e-20 Score=151.00 Aligned_cols=117 Identities=23% Similarity=0.402 Sum_probs=98.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEE-CCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
.+||+++|++|||||||++++..+.|... .||.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999999988764 688887666555554 4467899999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCC
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~ 138 (231)
|||++ +++.+..|+.++.+... ...+.++++||.|+...
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~ 124 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA 124 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc
Confidence 99999 67778888888876543 34667889999998653
No 110
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.85 E-value=2e-20 Score=153.91 Aligned_cols=120 Identities=33% Similarity=0.503 Sum_probs=110.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|..+.|.+.+.+|++..+.......++..+++.+|||+|+++|+.++..|++.++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 39999999999999999999999999999999999888877777776689999999999999999999999999999999
Q ss_pred EecC----cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 101 VTSV----EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 101 ~dit----Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
||++ +++....|.+++........+.+++++|.|+.....
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 9999 677778999999998887788889999999998754
No 111
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.84 E-value=3.2e-20 Score=146.33 Aligned_cols=117 Identities=26% Similarity=0.434 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|+++.+...+.|+.. +.....+..++..+.+++||++|++++...+..+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6999999999999999999999999888888886 444566777888999999999999998888899999999999999
Q ss_pred ecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 102 TSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 102 dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
|++ +|.... .|+..+..... ..+.++++||.|+.....
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDEN 121 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchh
Confidence 999 777664 68888877655 566779999999876553
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=1.5e-20 Score=151.20 Aligned_cols=114 Identities=25% Similarity=0.443 Sum_probs=92.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||++++..+.|.. +.||++.++. .+.. ..+.+.+||++|++.++.++..|++++|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999888875 7899986554 3444 45889999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHh-cCCcceeeecccccCCCCC
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTL-FDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~-~~~~~~~~vv~~k~dl~~~ 138 (231)
|||++ +++.+..|+..+.+. .....+.++++||.|+...
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 99998 677766666555332 1234567789999998753
No 113
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.84 E-value=2.2e-20 Score=148.18 Aligned_cols=110 Identities=25% Similarity=0.440 Sum_probs=93.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|++|||||||+++|.++.+.. +.||++.++. .+.. ..+.+.+||++|++++..++..+++++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999988765 8899986654 3444 35889999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCC
Q psy5781 103 SV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~ 137 (231)
++ +++++..|+..+.+... ...+.++++||.|+..
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 98 78899899888875432 3456788999999864
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.83 E-value=3.2e-20 Score=145.13 Aligned_cols=112 Identities=15% Similarity=0.337 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD-FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~-f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+|+++|++|||||||+++|.++. +...+.||++.... .+.. ..+.+.+||++|++++..++..+++.+|++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999876 46678899985433 3333 4588999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhc---CCcceeeecccccCCCCC
Q psy5781 102 TSV---EYCYQRNWHKQAVTLF---DKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~---~~~~~~~vv~~k~dl~~~ 138 (231)
|++ +++.+..|+..+.+.. ....+.++++||.|+...
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 999 7888888888876542 245668899999998754
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=4.3e-20 Score=146.36 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
+|+++|++|||||||++++.++ +...+.||++.. ...+..+ .+.+++||++|+++++.++..|++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 788899999854 4455554 4889999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCc
Q psy5781 103 SV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~ 139 (231)
++ +++.+..|+..+.+... ...+.++++||.|+...+
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 99 78888999998876532 456678999999998755
No 116
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.83 E-value=6.4e-20 Score=145.84 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=95.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||++++.++.+ ..+.||++ +....+.+++ +.+.+||++|++.++.++..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4568999999999999999999998754 46788988 4444556653 78999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHh-cCCcceeeecccccCCCCC
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTL-FDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~-~~~~~~~~vv~~k~dl~~~ 138 (231)
+|||++ +|+++..|+.++.+. .....+.++++||.|+...
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 999999 788888888877543 2345667899999998754
No 117
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.83 E-value=9.3e-20 Score=145.50 Aligned_cols=151 Identities=21% Similarity=0.264 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
.||+++|++|||||||++++.++.+...+.||.+..+ ...+.+++..+.+.+||++|++++..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6999999999999999999999999888889887544 466778888899999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccc-hhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 102 TSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHK-FGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~-~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|++ +++.+..|+..+.+... ...+.++++||.|+...+...... ...+...+.++.+++. ..++.++|...+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999 89999998888877643 445677999999987543322111 1123333444555554 455777666554
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.81 E-value=2.5e-19 Score=140.05 Aligned_cols=111 Identities=23% Similarity=0.401 Sum_probs=91.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|++|||||||+++|.++.+.. +.||++.++ ..+..+ ..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999998875 568888544 344443 45899999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCC
Q psy5781 103 SV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~ 137 (231)
++ +++.+..|+.++.+... ...+.++++||.|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 99 67888888887765432 4566889999999864
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.81 E-value=3.1e-19 Score=142.30 Aligned_cols=113 Identities=22% Similarity=0.399 Sum_probs=92.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||++++..+.+.. +.||++.++. .+.++ .+.+.+||++|++.+...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999998876 6789885543 44444 4889999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCC
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~ 137 (231)
|||++ ++..+..|+..+.+... ...+.++++||.|+..
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 99999 67777776666644322 3466788999999875
No 120
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.81 E-value=2.9e-19 Score=133.25 Aligned_cols=111 Identities=27% Similarity=0.457 Sum_probs=83.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFV--EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
||+|+|+.||||||||++|+++.+. ..+.++.+.++......+......+.+||++|++.+...+..++.++|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 8999999999999999999998876 22333334345555667777777899999999998888878889999999999
Q ss_pred EecC---cHhhHHH---HHHHHHHhcCCcceeeecccccC
Q psy5781 101 VTSV---EYCYQRN---WHKQAVTLFDKYKFGHAFSTSLA 134 (231)
Q Consensus 101 ~dit---Sf~~l~~---w~~~i~~~~~~~~~~~vv~~k~d 134 (231)
||++ |++.+.. |+..+.....+ .+.++++||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~-~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKN-IPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSC-SEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCC-CCEEEEEeccC
Confidence 9999 7888754 55555554334 66778999876
No 121
>KOG0070|consensus
Probab=99.79 E-value=2.3e-19 Score=141.22 Aligned_cols=117 Identities=21% Similarity=0.425 Sum_probs=100.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
-.....+|+++|..++||||+++++..+++... .||+| |.+.++.+. .+.+++||.+||++++.+|++|+++.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEc--ceEEEEEecCCCcccccchhhhccCCcE
Confidence 456789999999999999999999999998775 89999 666777776 4899999999999999999999999999
Q ss_pred EEEEEecCcHhhHHHHHHHHHHhcCCcc----eeeecccccCCCCC
Q psy5781 97 VIIEVTSVEYCYQRNWHKQAVTLFDKYK----FGHAFSTSLAMPQV 138 (231)
Q Consensus 97 vIlV~ditSf~~l~~w~~~i~~~~~~~~----~~~vv~~k~dl~~~ 138 (231)
+|+|.|.+.-+++.+-.+++.+...... +.++.+||-|++..
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 9999999988888888888888876543 34556667666654
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.79 E-value=1.3e-18 Score=136.12 Aligned_cols=111 Identities=27% Similarity=0.411 Sum_probs=88.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|+++||||||++++..+.+.. +.||++.++. .+.. ..+.+++||++|++.++.++..+++.+|++|+|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 79999999999999999998888764 6788885543 3333 45789999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHH-hcCCcceeeecccccCCCCC
Q psy5781 103 SV---EYCYQRNWHKQAVT-LFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~-~~~~~~~~~vv~~k~dl~~~ 138 (231)
++ ++.....|+..+.+ ......+.++++||.|+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 99 55555555554433 22345678899999998653
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.78 E-value=1.5e-18 Score=139.74 Aligned_cols=114 Identities=15% Similarity=0.287 Sum_probs=94.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
.+.+||+++|++|||||||++++.++.+. .+.||.+.. ...+.+++ +.+.+||++|++.+..++..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988874 577888743 34566665 67899999999999889999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCC
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~ 137 (231)
+|||++ +++....|+.++.+... ...+.++++||.|+..
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 999998 77778888888765443 3466778899999864
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.78 E-value=2.6e-18 Score=134.07 Aligned_cols=112 Identities=25% Similarity=0.418 Sum_probs=92.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
||+++|++|||||||+++++++.+ ..+.+|.+... ..+.++ .+.+.+||++|++.+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 799999999999999999999884 45778888544 344554 4789999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCCc
Q psy5781 103 SV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~~ 139 (231)
++ ++..+..|+..+.+.. ....+.++++||.|+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 99 7888888888776644 3455677889999987644
No 125
>KOG0073|consensus
Probab=99.78 E-value=1.1e-18 Score=134.53 Aligned_cols=117 Identities=23% Similarity=0.421 Sum_probs=93.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
..++.++|.++|..|+|||+++++|.+.. .+...||.| |..+++.+++ +.++|||.+||...+.+|++||..+||
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 35669999999999999999999999776 666889999 7777888866 889999999999999999999999999
Q ss_pred EEEEEecCcHhhHHHHHHHHHHhcCCc----ceeeecccccCCCCC
Q psy5781 97 VIIEVTSVEYCYQRNWHKQAVTLFDKY----KFGHAFSTSLAMPQV 138 (231)
Q Consensus 97 vIlV~ditSf~~l~~w~~~i~~~~~~~----~~~~vv~~k~dl~~~ 138 (231)
+|+|+|.+...++++-..++.....+. ...++++||.|+...
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 999999994444444444444333322 345677888877743
No 126
>KOG0096|consensus
Probab=99.77 E-value=1.9e-18 Score=136.22 Aligned_cols=120 Identities=27% Similarity=0.483 Sum_probs=109.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
.-.+|++++|+.|.|||++++|.+.++|...|.+|+|.+.+...+..+...+++..|||.|++.+..+...||-++.+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45799999999999999999999999999999999999888666666656799999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
++||++ ++.++.+|.+++.+.+.+ .++.+-|||.|++...
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~N-iPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVREN-IPIVLCGNKVDIKARK 130 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcC-CCeeeeccceeccccc
Confidence 999999 889999999999999988 5566889999988754
No 127
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.77 E-value=1.2e-17 Score=128.15 Aligned_cols=118 Identities=22% Similarity=0.349 Sum_probs=102.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+.++..++..+++++++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999998888888998888877788888778999999999999999999999999999999
Q ss_pred EecC----cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 101 VTSV----EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 101 ~dit----Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+|+. ++.... .|...+.+......+.++++||.|+...
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDA 123 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcc
Confidence 9998 556554 8888888777655567789999999764
No 128
>KOG0071|consensus
Probab=99.77 E-value=2.5e-18 Score=129.49 Aligned_cols=116 Identities=25% Similarity=0.436 Sum_probs=96.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
+.++|+++|..++||||++..+..+.. ....||+| |.++++.+. .+++++||.+|+++.+.+|++||....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtyk--N~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEee--eeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 478999999999999999999998874 45789999 777777774 4899999999999999999999999999999
Q ss_pred EEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 100 EVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 100 V~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
|.|..+-+++++-.+++.++..+.....++....+++++.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLP 131 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence 99999559999999999999886655434333344444444
No 129
>KOG1673|consensus
Probab=99.77 E-value=1.2e-18 Score=133.23 Aligned_cols=157 Identities=23% Similarity=0.333 Sum_probs=129.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
++.-.+||-++||+.+|||||+-.|+++.+.+++..+.|+++..+++.+.|..+.+.|||.+|++++..+.+....++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh--------hhhhcCCCccccccccch
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG--------HASSSAMPFPQVWPCLKF 165 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~--------~s~~~~~~~~ev~~~~nv 165 (231)
++++||++ ++..+..|++..+... +..+.+++|+|.|.--+.+-.+.+.- .+-...+-|......+|+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccC-CccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 99999999 8889999999876644 44556699999887666654333221 111122223444558899
Q ss_pred hhhhhhhcc
Q psy5781 166 GHAFSTSLA 174 (231)
Q Consensus 166 ~e~f~~~~~ 174 (231)
...|...++
T Consensus 175 ~KIFK~vlA 183 (205)
T KOG1673|consen 175 QKIFKIVLA 183 (205)
T ss_pred HHHHHHHHH
Confidence 999987764
No 130
>PTZ00099 rab6; Provisional
Probab=99.75 E-value=9.5e-18 Score=134.39 Aligned_cols=131 Identities=24% Similarity=0.351 Sum_probs=105.6
Q ss_pred cCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHh
Q psy5781 43 SGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTL 119 (231)
Q Consensus 43 ~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~ 119 (231)
.+.|.++|.||+|.++..+.+.+++..+.+.||||+|++++..++..|++++|++|+|||++ ||+.+..|+.++.+.
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 35788899999999999888999999999999999999999999999999999999999999 899999999999877
Q ss_pred cCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 120 FDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 120 ~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
.....++++++||.|+...++....+.. .....+..+.|++. ..|++++|...+
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~ 138 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIA 138 (176)
T ss_pred cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 6555667899999999754432222221 23334445666665 677888888766
No 131
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=1.5e-17 Score=133.80 Aligned_cols=114 Identities=15% Similarity=0.236 Sum_probs=91.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|.+|||||||++++.++.+.. +.||.+... ..+.+++ +.+.+||++|+..++.++..|+.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999887753 567776433 3444544 78999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCC
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~ 137 (231)
+|+|++ +++....|+.++.+.. ....+.++++||.|++.
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 999999 5777777777665432 23456889999999864
No 132
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.75 E-value=2.8e-17 Score=131.44 Aligned_cols=118 Identities=29% Similarity=0.491 Sum_probs=94.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
..+.+||+++|..|+|||||++++..+.+.. +.||.| +....+..++ +.+.+||.+|+..++.+|+.|+.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 4788999999999999999999999876554 889999 5555677766 7789999999999999999999999999
Q ss_pred EEEEecCcHhhHHHHHHHHHHhcC----CcceeeecccccCCCCCcc
Q psy5781 98 IIEVTSVEYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 98 IlV~ditSf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~~~~ 140 (231)
|+|+|.+..+++.+-.+++.+... ...+.++++||.|++....
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~ 132 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS 132 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch
Confidence 999999944455544444444333 3456778889999876433
No 133
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=2.1e-17 Score=127.70 Aligned_cols=112 Identities=25% Similarity=0.372 Sum_probs=92.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
.|+++|++|||||||++++.+..|..++.||++.++. .+..++ +.+.+||++|++.++.++..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3899999999999999999999999999999986654 344443 789999999999999999999999999999999
Q ss_pred cC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCC
Q psy5781 103 SV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 103 it---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~ 138 (231)
++ ++.....|+..+.+.. ....+.++++||.|+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 99 6666667776665432 234556789999998654
No 134
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.73 E-value=2.6e-17 Score=129.42 Aligned_cols=112 Identities=19% Similarity=0.346 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC------CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD------FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~------f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
+|+++|++|||||||++++.... +...+.||++.++. .+.++ ...+.+||++|++.+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 58999999999999999997532 24456788876554 45555 4789999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCC
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~ 138 (231)
+++|||.+ +++.+..|+..+.+... ...+.++++||.|+...
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 99999999 67777778777765432 34567789999998653
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.72 E-value=6.1e-17 Score=128.84 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC-------CCCCCcccce------eeEEEEEEEEE-----CCeEEEEEEeeCCCccccc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG-------DFVEKTGNTI------GVDFSMKTVNI-----DGKKVKLQIWDTAGQERFR 84 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~-------~f~~~~~pt~------~~~~~~~~~~~-----~~~~~~l~i~D~~G~~~~~ 84 (231)
+|+++|+.+||||||+++|++. .+...+.++. |.++....+.+ ++..+.+.||||+|++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6899999999999999999873 2333344433 44454444333 6678899999999999999
Q ss_pred hhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 85 TITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 85 ~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..+..+++.+|++|+|||++ +++.+..|.... ....+.++++||.|+..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPS 133 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCc
Confidence 99999999999999999998 566777675433 23345678999999864
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=3e-16 Score=124.15 Aligned_cols=115 Identities=21% Similarity=0.283 Sum_probs=91.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||++++.+..+. .+.||.|.+ ...+..++ ..+.+||++|+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 44799999999999999999999987664 467888843 34555655 67899999999998888899999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCC
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~ 138 (231)
+|||++ ++.....|+..+.+.. ....+..+++||.|+...
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 999999 6777776766664432 334567788999998653
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.69 E-value=1.3e-16 Score=129.27 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc--CCCCCCc------------ccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhh
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS--GDFVEKT------------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT 87 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~--~~f~~~~------------~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 87 (231)
-+|+++|+.+||||||+++|+. +.|...+ .++.|.++......++.+.+.+.+|||+|+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 6665543 2445655665656666667899999999999999999
Q ss_pred hhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 88 QSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
..+++.+|++++|||++ .+.....|+..+.. ...+.++++||.|+...
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 99999999999999999 44444555554432 34456788999998653
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=1e-16 Score=123.11 Aligned_cols=127 Identities=12% Similarity=0.153 Sum_probs=82.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc-----ccchhhhhcccCCcEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-----RFRTITQSYYRSANGV 97 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~~~~~~~ad~v 97 (231)
||+++|++|||||||+++|.++.+ .+.+|++.++. + .+|||+|+. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999998875 35566654442 1 589999973 3444434 58899999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccc-hhhhhhcCC-Ccccccc--ccchhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHK-FGHASSSAM-PFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~-~~~s~~~~~-~~~ev~~--~~nv~e~f~ 170 (231)
|+|||++ ++.. ..|...+ . .+.++++||.|+..... .... .+.....+. ++.+++. ..|+++.|.
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~----~--~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF----V--KPVIGLVTKIDLAEADV-DIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc----c--CCeEEEEEeeccCCccc-CHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 9999998 6655 3454432 1 25667889999864221 1111 111222222 4444444 556777776
Q ss_pred hh
Q psy5781 171 TS 172 (231)
Q Consensus 171 ~~ 172 (231)
..
T Consensus 139 ~l 140 (142)
T TIGR02528 139 YL 140 (142)
T ss_pred HH
Confidence 54
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.68 E-value=4.8e-16 Score=121.35 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=77.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc---CCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS---GDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~---~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
.|+++|++|||||||+++|++ +.+..++.++...+.....+.+++ ...+.+|||+|++++......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 589999999999999999996 344444434333333334445542 3579999999999987766778899999999
Q ss_pred EEecCc--HhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 100 EVTSVE--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 100 V~ditS--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
|||++. ......++..+... +.++.++++||.|+...
T Consensus 81 V~d~~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 81 VVAADEGIMPQTREHLEILELL--GIKRGLVVLTKADLVDE 119 (164)
T ss_pred EEECCCCccHhHHHHHHHHHHh--CCCcEEEEEECccccCH
Confidence 999982 22222332222221 22356789999998653
No 140
>KOG0074|consensus
Probab=99.68 E-value=2.3e-16 Score=119.11 Aligned_cols=89 Identities=28% Similarity=0.506 Sum_probs=79.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
++.+||.++|-.++|||+|++++.... +....||.| |.++.+..+| .+.+++||.+||...+.+|.+||.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 678999999999999999999998665 566889999 8888888886 589999999999999999999999999999
Q ss_pred EEEecC---cHhhHHH
Q psy5781 99 IEVTSV---EYCYQRN 111 (231)
Q Consensus 99 lV~dit---Sf~~l~~ 111 (231)
+|.|.+ -|+.+..
T Consensus 91 yVIDS~D~krfeE~~~ 106 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISE 106 (185)
T ss_pred EEEeCCchHhHHHHHH
Confidence 999988 5565543
No 141
>KOG3883|consensus
Probab=99.67 E-value=3.9e-16 Score=119.29 Aligned_cols=142 Identities=19% Similarity=0.238 Sum_probs=111.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEE-CCeEEEEEEeeCCCcccc-chhhhhcccCC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERF-RTITQSYYRSA 94 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-~~~~~~~~~~a 94 (231)
.+..||+|+|..+||||++|.+++.+.. ..++.||++ |.|...++. .|..-.+.|+||.|-..+ ..+-++|+.-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 3568999999999999999999997765 346779998 777777766 455678999999997766 55788999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcce-eeecccccCCCCCccccccchh-hhhhcCCCcccccc
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKF-GHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP 161 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~-~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~ 161 (231)
|+++||||.. ||+.+....++|.+..++..+ +.+++|+.|....+..++.-.. +++.....+-|+..
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta 157 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTA 157 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEe
Confidence 9999999999 999999999999998887766 6677899999776665554443 44444444444433
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.67 E-value=7.9e-16 Score=125.46 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=96.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC--cccceeeEEEEEEEEECCeEEEEEEeeCCCccc---------cchhh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK--TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER---------FRTIT 87 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~--~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~ 87 (231)
...++|+++|++|||||||++++++..+... +.+|.. .....+..++. ..+.+|||+|... +...+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 4568999999999999999999998864322 334443 33344555442 3789999999732 22221
Q ss_pred hhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--c
Q psy5781 88 QSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--C 162 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~ 162 (231)
..+..+|++++|+|.+ +++++..|.+.+........+.++++||.|+....... ......+.++.+++. .
T Consensus 116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH----HHhhcCCCceEEEEcCCC
Confidence 2367899999999998 77778888888877665566788999999986643211 112223333444443 4
Q ss_pred cchhhhhhh
Q psy5781 163 LKFGHAFST 171 (231)
Q Consensus 163 ~nv~e~f~~ 171 (231)
.|++++|..
T Consensus 191 ~gi~~l~~~ 199 (204)
T cd01878 191 EGLDELLEA 199 (204)
T ss_pred CCHHHHHHH
Confidence 556665544
No 143
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.66 E-value=8.1e-16 Score=125.90 Aligned_cols=117 Identities=16% Similarity=0.257 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC-cEEEEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA-NGVIIEV 101 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a-d~vIlV~ 101 (231)
+|+++|++|||||+|+++|..+.+...+.++.. ..........++...+.|||++|+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999988777655532 22222222224457899999999999999889999999 9999999
Q ss_pred ecC----cHhhHHHHHHHHHHhc---CCcceeeecccccCCCCCcc
Q psy5781 102 TSV----EYCYQRNWHKQAVTLF---DKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 102 dit----Sf~~l~~w~~~i~~~~---~~~~~~~vv~~k~dl~~~~~ 140 (231)
|.+ ++..+..|+..+.... ....+.++++||.|+....+
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 999 3445556665554332 24566778999999876555
No 144
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.66 E-value=1.4e-15 Score=119.61 Aligned_cols=144 Identities=13% Similarity=0.029 Sum_probs=87.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC-ccc-ceeeEEEEEEEEECCeEEEEEEeeCCCccccch---------hhhhcc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEK-TGN-TIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT---------ITQSYY 91 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~-~~p-t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~~ 91 (231)
+|+++|++|||||||+++|.++.+... +.. |.+ .....+.. ..+.+.||||+|+..... ......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS--LFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc--eeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 799999999999999999999877432 211 222 22222222 347899999999842110 001111
Q ss_pred cCCcEEEEEEecC---c--HhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccc
Q psy5781 92 RSANGVIIEVTSV---E--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLK 164 (231)
Q Consensus 92 ~~ad~vIlV~dit---S--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~n 164 (231)
..+|++|+|+|++ + ++....|++.+.+.. ...+.++++||.|+........ ..........++.+++. ..|
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEEEecccCC
Confidence 2368999999998 3 356667888887654 3556779999999976443221 11112222334444443 556
Q ss_pred hhhhhhhh
Q psy5781 165 FGHAFSTS 172 (231)
Q Consensus 165 v~e~f~~~ 172 (231)
++++|...
T Consensus 156 i~~l~~~l 163 (168)
T cd01897 156 VDEVKNKA 163 (168)
T ss_pred HHHHHHHH
Confidence 66666543
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=9.6e-16 Score=119.05 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=96.9
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch------hhhhccc--CCcEE
Q psy5781 26 LIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT------ITQSYYR--SANGV 97 (231)
Q Consensus 26 vlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~--~ad~v 97 (231)
++|.+|||||||++++.+..+...+.+....+.....+.+++ ..+.+|||+|+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998865544445555556666777776 5789999999987654 3556665 99999
Q ss_pred EEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 98 IIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 98 IlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|+|+|.++.+....|...+.+ ...+.++++||.|+.................+.++.+++. ..|+.+.|...
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 79 VNVVDATNLERNLYLTLQLLE---LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred EEEeeCCcchhHHHHHHHHHH---cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHH
Confidence 999999965555566655544 3456779999999976543222222233344555666555 45666666544
No 146
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.65 E-value=1.4e-15 Score=119.82 Aligned_cols=114 Identities=10% Similarity=0.034 Sum_probs=77.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-Ccc-cceeeEEEEEEEEECCeEEEEEEeeCCCcc----ccchhhhhcc---cC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVE-KTG-NTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSYY---RS 93 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~-~~~-pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~---~~ 93 (231)
+|+++|++|||||||++++.+..... .+. .|.. .....+.+++ ...+.+|||+|.. ....+...++ ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~--~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLV--PNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccC--CcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 58999999999999999999765321 111 1211 1112233333 2479999999963 2223333443 35
Q ss_pred CcEEEEEEecC----cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCCc
Q psy5781 94 ANGVIIEVTSV----EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 94 ad~vIlV~dit----Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~ 139 (231)
+|++++|+|++ +++++..|.+++.+... ...+.++++||.|+....
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 130 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE 130 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch
Confidence 99999999998 47888999999987754 245667899999986543
No 147
>KOG4423|consensus
Probab=99.62 E-value=1.2e-18 Score=136.88 Aligned_cols=128 Identities=31% Similarity=0.542 Sum_probs=108.3
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECC-eEEEEEEeeCCCccccchhhhh
Q psy5781 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDG-KKVKLQIWDTAGQERFRTITQS 89 (231)
Q Consensus 11 ~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~ 89 (231)
..+...+....+|+.|+|+-|||||++++||+...|...|..|+|++|..+....+. ..+++++||..||+++..+..-
T Consensus 15 ~a~ap~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrV 94 (229)
T KOG4423|consen 15 RASAPKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRV 94 (229)
T ss_pred hcCCCchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEE
Confidence 334445578899999999999999999999999999999999999999888777755 4578999999999999999999
Q ss_pred cccCCcEEEEEEecC---cHhhHHHHHHHHHHhc--C-Ccce-eeecccccCCCCC
Q psy5781 90 YYRSANGVIIEVTSV---EYCYQRNWHKQAVTLF--D-KYKF-GHAFSTSLAMPQV 138 (231)
Q Consensus 90 ~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~--~-~~~~-~~vv~~k~dl~~~ 138 (231)
||+.+.+.++|||++ +|+.+..|.+++.... + +.++ .+++.||.|....
T Consensus 95 yykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred EecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 999999999999999 9999999999996543 2 2333 4566777776553
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.62 E-value=6.6e-15 Score=111.49 Aligned_cols=114 Identities=39% Similarity=0.691 Sum_probs=93.1
Q ss_pred EEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC
Q psy5781 26 LIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 26 vlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit 104 (231)
++|.+|+|||||++++.+... .....+|. .++........+....+.+||++|+..+......+++.+|++++|||.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 56666777 6777777777777899999999999988888888999999999999999
Q ss_pred ---cHhhHHHH-HHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 105 ---EYCYQRNW-HKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 105 ---Sf~~l~~w-~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
+++.+..| ...+........+.++++||.|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~ 119 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV 119 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc
Confidence 77777777 3344444556667788999999876543
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=99.61 E-value=1.6e-15 Score=123.36 Aligned_cols=114 Identities=12% Similarity=0.151 Sum_probs=79.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC-----------ccccchhh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG-----------QERFRTIT 87 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~ 87 (231)
...+||+++|++|||||||++++.++.+...+.|+. ++....+.++ .+.+|||+| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 356899999999999999999999988765555644 3444444443 589999999 56777766
Q ss_pred hhccc----CCcEEEEEEecCcHhhH-HHHHH--------HHHHh-cCCcceeeecccccCCCCC
Q psy5781 88 QSYYR----SANGVIIEVTSVEYCYQ-RNWHK--------QAVTL-FDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 88 ~~~~~----~ad~vIlV~ditSf~~l-~~w~~--------~i~~~-~~~~~~~~vv~~k~dl~~~ 138 (231)
..|+. .++++++|+|.+++.++ ..|.. ++.+. .....+.++++||.|+...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 66664 35788888888766554 44521 12222 2235567899999998654
No 150
>KOG0075|consensus
Probab=99.61 E-value=6.3e-16 Score=117.39 Aligned_cols=117 Identities=22% Similarity=0.394 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
...+.++|..++|||||++....+.|.++..||.| |..+ +++...+.+.+||.+||..|+.+|+.|++.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmr--k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeE--EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 46899999999999999999999999999999999 4434 4444568999999999999999999999999999999
Q ss_pred EecCcHhhHHHHHHHHHHhcC----CcceeeecccccCCCCCccc
Q psy5781 101 VTSVEYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQVRPC 141 (231)
Q Consensus 101 ~ditSf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~~~~~ 141 (231)
.|....+.+.--.+++...+. ...+.+++|||.|++....|
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~ 140 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK 140 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH
Confidence 999966666555556555544 34556788999999887665
No 151
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.59 E-value=7.6e-15 Score=115.22 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=80.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC-CeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
.|+++|++|||||||+++|..+.+...+.+++..+.....+..+ +....+.+|||+|++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988876544444333333334433 23578999999999999888898999999999999
Q ss_pred ecCcH--hhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 102 TSVEY--CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 102 ditSf--~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|++.. ......+..+.. ...+.++++||.|+..
T Consensus 82 d~~~~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 82 AADDGVMPQTIEAIKLAKA---ANVPFIVALNKIDKPN 116 (168)
T ss_pred ECCCCccHHHHHHHHHHHH---cCCCEEEEEEceeccc
Confidence 99821 111122222322 3445778999999864
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.59 E-value=2.3e-14 Score=129.92 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=83.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCC--CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh--------hh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD--FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQ 88 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~ 88 (231)
...+||+++|++|||||||++++++.. +...+..| ..++....+.+++ +.+.+|||+|+.++... ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt-Trd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT-TRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc-EEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 456899999999999999999999865 34555444 3567777778877 55689999998654432 24
Q ss_pred hcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 89 SYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 89 ~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+++++|++++|||++ +++.. |+..+.. ...+.++++||.|+..
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCC
Confidence 6789999999999998 56554 7666542 3456679999999864
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.58 E-value=5.6e-15 Score=130.32 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=85.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCC-Cc-ccceeeEEEEEEEEECCeEEEEEEeeCCCc---------cccchhh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KT-GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ---------ERFRTIT 87 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~-~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~---------~~~~~~~ 87 (231)
...++|+++|.+|||||||++++++..+.. ++ -+|. +...+.+.+++. ..+.||||+|. +.|...+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl 263 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL 263 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH
Confidence 345899999999999999999999876532 22 2343 455566777432 47899999997 2233322
Q ss_pred hhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 88 QSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.++.++|++++|+|++ +++.+..|...+........+.++++||.|+..
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 2478999999999998 677777787777666555667789999999865
No 154
>PRK15494 era GTPase Era; Provisional
Probab=99.55 E-value=4.7e-14 Score=124.05 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=92.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeEEEEEEEEECCeEEEEEEeeCCCccc-cchhh------
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-FRTIT------ 87 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~---~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~------ 87 (231)
..+.+||+++|++|||||||+++|++..+.. ....|. +.....+..++ ..+.+|||+|+.+ +..+.
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR--SIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc--CcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHH
Confidence 3566899999999999999999999887642 222232 23334555655 4679999999843 22221
Q ss_pred -hhcccCCcEEEEEEecC-cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcC--CCcccccc
Q psy5781 88 -QSYYRSANGVIIEVTSV-EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSA--MPFPQVWP 161 (231)
Q Consensus 88 -~~~~~~ad~vIlV~dit-Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~--~~~~ev~~ 161 (231)
..++.++|++++|+|.+ +++.+. .|+..+... ..+.++++||.|+.... ..... ...... ..+..+++
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~~---~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL---NIVPIFLLNKIDIESKY---LNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc---CCCEEEEEEhhcCcccc---HHHHHHHHHhcCCCcEEEEEec
Confidence 13477999999999988 888875 455555432 23345789999986431 11111 111111 22344444
Q ss_pred --ccchhhhhhhhc
Q psy5781 162 --CLKFGHAFSTSL 173 (231)
Q Consensus 162 --~~nv~e~f~~~~ 173 (231)
..|+++.|...+
T Consensus 199 ktg~gv~eL~~~L~ 212 (339)
T PRK15494 199 LSGKNIDGLLEYIT 212 (339)
T ss_pred cCccCHHHHHHHHH
Confidence 667888887765
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.53 E-value=7.8e-14 Score=127.77 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=79.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc--------cchhhhhc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--------FRTITQSY 90 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~ 90 (231)
...+|+++|.+|||||||+++++++.+. ....|.+..+.....+.+++ ..+.||||+|.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3469999999999999999999987642 22334333344445555665 4578999999762 33445678
Q ss_pred ccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 91 YRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 91 ~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
++.+|++|+|||++ ++. ...|...+++ ...+.++++||.|+..
T Consensus 115 ~~~aD~il~VvD~~~~~s~~-~~~i~~~l~~---~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 115 MRTADAVLFVVDATVGATAT-DEAVARVLRR---SGKPVILAANKVDDER 160 (472)
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECccCCc
Confidence 89999999999999 332 2344444442 3566779999999864
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.51 E-value=5.2e-14 Score=128.07 Aligned_cols=110 Identities=20% Similarity=0.188 Sum_probs=81.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh--------hhh
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQS 89 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~ 89 (231)
..+||+++|.+|||||||++++++... ...+..|. .++....+.+++ ..+.+|||+|..++... ...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT-~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTT-RDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-cccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 348999999999999999999998763 34443333 356666777776 56899999998765432 234
Q ss_pred cccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 90 YYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 90 ~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+++++|++++|||++ +++....|.. ....+.++++||.|+...
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcccc
Confidence 788999999999999 6666555543 334567799999998654
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.51 E-value=1.4e-13 Score=126.21 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=81.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCc----------cccchhh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRTIT 87 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~ 87 (231)
...+||+++|.+|||||||++++++..+. ....+....+.....+.+++.. +.||||+|. +.|..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHH
Confidence 35699999999999999999999987652 2233444456666677777754 579999995 2333332
Q ss_pred -hhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 88 -QSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 88 -~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..+++++|++|+|||++ +++.+. |+..+. ......++++||.|+..
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCC
Confidence 34678999999999999 666654 333333 34567789999999864
No 158
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=2.5e-13 Score=119.06 Aligned_cols=149 Identities=9% Similarity=-0.018 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccc-ceeeEEEEEEEEECCeEEEEEEeeCCCccc----cchhhh---hccc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGN-TIGVDFSMKTVNIDGKKVKLQIWDTAGQER----FRTITQ---SYYR 92 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~p-t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~---~~~~ 92 (231)
-.|.+||.++||||||++++...+. ...|.- |.. .....+.++ ....+.|||++|.-+ ...+.. .+++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~--p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLH--PNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeC--ceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 4789999999999999999997542 223332 222 222334442 224689999999632 222333 3456
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccc
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLK 164 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~n 164 (231)
+++++|+|+|++ +++++..|.+++..+.+ ..++.++++||.|+............ .....+..+..+++ ..|
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 799999999999 68999999999988755 35677899999998754332111111 11222344555554 567
Q ss_pred hhhhhhhhc
Q psy5781 165 FGHAFSTSL 173 (231)
Q Consensus 165 v~e~f~~~~ 173 (231)
+++++....
T Consensus 316 I~eL~~~L~ 324 (335)
T PRK12299 316 LDELLRALW 324 (335)
T ss_pred HHHHHHHHH
Confidence 787776654
No 159
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.49 E-value=2.5e-13 Score=108.62 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=77.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc----------cccchhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRTIT 87 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~ 87 (231)
....++|+++|++|+|||||++++++..+...+.++.+.+.....+..++ .+.+||++|. +.+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 46778999999999999999999998876666666666444433344443 5899999994 3344445
Q ss_pred hhcccC---CcEEEEEEecC-cHhhHHH-HHHHHHHhcCCcceeeecccccCCCC
Q psy5781 88 QSYYRS---ANGVIIEVTSV-EYCYQRN-WHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 88 ~~~~~~---ad~vIlV~dit-Sf~~l~~-w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..|++. ++++++|+|.+ .+..... +...+.. ...+.+++.||.|+..
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~---~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE---RGIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH---cCCCEEEEEECcccCC
Confidence 566654 57999999998 2322222 2233322 2455678899999864
No 160
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.48 E-value=7.6e-13 Score=102.18 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch--------hhhhcc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV--EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT--------ITQSYY 91 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~ 91 (231)
+||+++|++|+|||||++++.+..+. ..+ +....++....+..++ ..+.+|||+|..++.. ....++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDI-AGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCC-CCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999987642 222 2332344444555554 6789999999765432 123467
Q ss_pred cCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 92 RSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 92 ~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.++|++++|+|++ +..+.+.|.. ......++++||.|+...
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCc
Confidence 7999999999999 5555544433 344667799999998653
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=3.6e-13 Score=104.13 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=73.2
Q ss_pred EEEcCCCCcHHHHHHHHHcCC--CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch--------hhhhcccCC
Q psy5781 25 VLIGDCGVGKTCVVHRFRSGD--FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT--------ITQSYYRSA 94 (231)
Q Consensus 25 vvlG~~~vGKTSLl~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~~a 94 (231)
+++|.+|||||||++++++.. +...+.++. .+........++ ..+.+|||+|...+.. ....+++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVT-RDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCce-eCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999999765 333443333 234444555554 6789999999877543 334567899
Q ss_pred cEEEEEEecC-cHhhHHHHH-HHHHHhcCCcceeeecccccCCCCCc
Q psy5781 95 NGVIIEVTSV-EYCYQRNWH-KQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 95 d~vIlV~dit-Sf~~l~~w~-~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
|++++|+|.+ .+.....++ +.+++ ...+.++++||.|+....
T Consensus 78 d~ii~v~d~~~~~~~~~~~~~~~~~~---~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 78 DVILFVVDGREGLTPADEEIAKYLRK---SKKPVILVVNKVDNIKEE 121 (157)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHh---cCCCEEEEEECcccCChH
Confidence 9999999998 222222222 22222 236677899999987643
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.48 E-value=2.6e-13 Score=127.16 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=100.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC-------CCCCCcccc------eeeEEEEEEEEE-----CCeEEEEEEeeCCCccc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG-------DFVEKTGNT------IGVDFSMKTVNI-----DGKKVKLQIWDTAGQER 82 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~-------~f~~~~~pt------~~~~~~~~~~~~-----~~~~~~l~i~D~~G~~~ 82 (231)
.-+|+++|+.++|||||+.+|+.. .+...+..+ .|+++....+.+ +++.+.++||||+|+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 458999999999999999999864 233333332 355555444333 56779999999999999
Q ss_pred cchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCC---c
Q psy5781 83 FRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMP---F 156 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~---~ 156 (231)
|...+..+++.+|++|+|||.+ +++....|...+. .....++++||.|+....... ...+.....+.. +
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~~~~-~~~el~~~lg~~~~~v 157 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSADPER-VKKEIEEVIGLDASEA 157 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccCHHH-HHHHHHHHhCCCcceE
Confidence 9999999999999999999999 6777777765543 234567889999986532210 001122222332 2
Q ss_pred ccccc--ccchhhhhhhhc
Q psy5781 157 PQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 157 ~ev~~--~~nv~e~f~~~~ 173 (231)
..++. ..|+++.|...+
T Consensus 158 i~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIV 176 (595)
T ss_pred EEeeccCCCCHHHHHHHHH
Confidence 23333 567777776643
No 163
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.47 E-value=4.3e-13 Score=117.44 Aligned_cols=150 Identities=9% Similarity=-0.019 Sum_probs=93.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc----cchhhhhc---cc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----FRTITQSY---YR 92 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~---~~ 92 (231)
.-.|++||.++||||||++++...+. ...|.-|. .......+.+++ ...+.|||++|..+ ...+...| +.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT-~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTT-LVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc-cCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 35899999999999999999997653 22232111 112222334443 36789999999742 22343344 44
Q ss_pred CCcEEEEEEecC------cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--c
Q psy5781 93 SANGVIIEVTSV------EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--C 162 (231)
Q Consensus 93 ~ad~vIlV~dit------Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~ 162 (231)
+++++|+|+|++ +++++..|.+++..+.. ..++.++++||.|+.................+..+.+++. .
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 699999999998 45777889998877653 3566778999999875432111111122233444555554 4
Q ss_pred cchhhhhhhh
Q psy5781 163 LKFGHAFSTS 172 (231)
Q Consensus 163 ~nv~e~f~~~ 172 (231)
.++++++...
T Consensus 315 ~GI~eL~~~I 324 (329)
T TIGR02729 315 EGLDELLYAL 324 (329)
T ss_pred cCHHHHHHHH
Confidence 5667666554
No 164
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.46 E-value=4.1e-13 Score=108.30 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=78.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc----------cccchhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRTIT 87 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~ 87 (231)
.+...||+++|++|||||||+++++++++...+.++.+.+.....+.. ...+.||||+|. +++..+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 447799999999999999999999998877777777774443333332 267999999994 4455555
Q ss_pred hhcccCC---cEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 88 QSYYRSA---NGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 88 ~~~~~~a---d~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
..|++.+ +++++|+|.+ .+.....+..+..+. ......+++||.|+...
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCH
Confidence 6666654 6788889988 444433222222221 23345688999998653
No 165
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.46 E-value=7.9e-13 Score=119.88 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc--------cchhhhhcc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--------FRTITQSYY 91 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~ 91 (231)
.+|+++|.+|||||||++++++.+. ..++ |.+..+.....+.+++ ..+.+|||+|.+. +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~-~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADT-PGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 5899999999999999999998764 3333 3233345555666666 7789999999876 223345678
Q ss_pred cCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCC-Ccccccc--ccchhh
Q psy5781 92 RSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAM-PFPQVWP--CLKFGH 167 (231)
Q Consensus 92 ~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~-~~~ev~~--~~nv~e 167 (231)
..+|++|+|+|.+ .+.....++....+. ...+.++++||.|+..... ...+ ....+. .+.+++. ..|+++
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~-~~~~---~~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA-DAYE---FYSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh-hHHH---HHhcCCCCCEEEEeeCCCCHHH
Confidence 8999999999998 333332222222121 1456778999999654211 1111 111222 1333433 556777
Q ss_pred hhhhhcc
Q psy5781 168 AFSTSLA 174 (231)
Q Consensus 168 ~f~~~~~ 174 (231)
.|...+.
T Consensus 153 l~~~I~~ 159 (435)
T PRK00093 153 LLDAILE 159 (435)
T ss_pred HHHHHHh
Confidence 7776654
No 166
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.45 E-value=5e-13 Score=106.59 Aligned_cols=110 Identities=16% Similarity=0.091 Sum_probs=79.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccce----------------eeEEEEEEEEECCeEEEEEEeeCCCccccchh
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTI----------------GVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~----------------~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 86 (231)
+|+++|++|+|||||++.+++......+.++. ..+.....+... ...+.+||++|...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999887665432211 112222223333 468999999999988888
Q ss_pred hhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 87 TQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 87 ~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+..+++.+|++++|+|.+ .......++..+.. .....++++||.|+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTREHLRIARE---GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH---CCCCeEEEEECCCCcc
Confidence 899999999999999998 21223344444433 4566778999999875
No 167
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.44 E-value=6.4e-13 Score=104.87 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=75.5
Q ss_pred EEcCCCCcHHHHHHHHHcCCC-CCCcc-cceeeEEEEEEEEECCeEEEEEEeeCCCccc----cchhh---hhcccCCcE
Q psy5781 26 LIGDCGVGKTCVVHRFRSGDF-VEKTG-NTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----FRTIT---QSYYRSANG 96 (231)
Q Consensus 26 vlG~~~vGKTSLl~~~~~~~f-~~~~~-pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~---~~~~~~ad~ 96 (231)
++|++|||||||++++.+..+ ...+. .|.. .....+.+++ ...+.+||++|..+ .+.+. ..+++.+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLE--PNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeec--CcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 589999999999999998864 23332 2222 2223344541 35689999999632 22222 235678999
Q ss_pred EEEEEecC-c--------HhhHHHHHHHHHHhcC-------CcceeeecccccCCCCCcc
Q psy5781 97 VIIEVTSV-E--------YCYQRNWHKQAVTLFD-------KYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 97 vIlV~dit-S--------f~~l~~w~~~i~~~~~-------~~~~~~vv~~k~dl~~~~~ 140 (231)
+++|+|.+ . ++.+..|..++..... ...+.++++||.|+.....
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH
Confidence 99999998 2 4456678888876543 2566778889999875433
No 168
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.44 E-value=1.3e-12 Score=111.74 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=78.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC----------cccceeeEEEEEEEEECCeEEEEEEeeCCCcccc-----
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF----- 83 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----------~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----- 83 (231)
...++|+|+|.+|+|||||++++++..+... +.+|++.+.....+..+|..+.+.||||+|-.+.
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 4579999999999999999999998877543 4667776777777777888899999999993221
Q ss_pred ---------------------chhhhhcccCCcEEEEEEecC-cHhhHHHH-HHHHHHhcCCcceeeecccccCCCC
Q psy5781 84 ---------------------RTITQSYYRSANGVIIEVTSV-EYCYQRNW-HKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 84 ---------------------~~~~~~~~~~ad~vIlV~dit-Sf~~l~~w-~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
...+..++.+..+.+++|.++ +-..+..| ++.++.... ....+++++|.|+..
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 111224555545555555554 22334444 333333333 445668899999854
No 169
>KOG1707|consensus
Probab=99.44 E-value=3e-13 Score=122.60 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=96.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++||.||||||||..++.++|++..++... ... --..+.-..+...|.|++..++.+......+++||++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~-IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RIL-IPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccc-cCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 45679999999999999999999999999987765543 111 1122333456789999987777677778889999999
Q ss_pred EEEEecC---cHhhHH-HHHHHHHHhcCC--cceeeecccccCCCCCcc
Q psy5781 98 IIEVTSV---EYCYQR-NWHKQAVTLFDK--YKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 98 IlV~dit---Sf~~l~-~w~~~i~~~~~~--~~~~~vv~~k~dl~~~~~ 140 (231)
++||+++ +.+.+. .|++.+++..++ +.+++++|||.|+.....
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 9999999 899996 899999998743 455779999999887654
No 170
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.42 E-value=4.3e-13 Score=105.51 Aligned_cols=131 Identities=13% Similarity=0.107 Sum_probs=80.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc-----ccchhhhhcccCCcEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-----RFRTITQSYYRSANGV 97 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~~~~~~~ad~v 97 (231)
||+++|.+|||||||++++.+. +.. ..++.+. .+++. .+||+||+. .++.+ ...++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-Ccc-CccceEE-------EECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence 7999999999999999997644 321 1233332 22222 279999973 22222 2347899999
Q ss_pred EEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcC--CCcccccc--ccchhhhhhhh
Q psy5781 98 IIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSA--MPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 98 IlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~--~~~~ev~~--~~nv~e~f~~~ 172 (231)
++|||.+ ....+..|+.++. ...+..+++||.|+.....-... ....+.+ .++.+++. ..|+++.|...
T Consensus 69 l~v~d~~~~~s~~~~~~~~~~----~~~~ii~v~nK~Dl~~~~~~~~~--~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 69 IYVHGANDPESRLPAGLLDIG----VSKRQIAVISKTDMPDADVAATR--KLLLETGFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred EEEEeCCCcccccCHHHHhcc----CCCCeEEEEEccccCcccHHHHH--HHHHHcCCCCCEEEEECCCccCHHHHHHHH
Confidence 9999999 2112345655541 23456689999998653321111 1222333 25655555 67888888775
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 143 ~ 143 (158)
T PRK15467 143 A 143 (158)
T ss_pred H
Confidence 5
No 171
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.42 E-value=9.7e-13 Score=123.32 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=98.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh------hhhcc--cCCcEEEE
Q psy5781 28 GDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI------TQSYY--RSANGVII 99 (231)
Q Consensus 28 G~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~ad~vIl 99 (231)
|++|||||||+|++.+..+.....|....+.....+.+++ ..+++|||+|+.++... .+.|+ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876444445555566666667766 45799999999876543 34444 37899999
Q ss_pred EEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhhcc
Q psy5781 100 EVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTSLA 174 (231)
Q Consensus 100 V~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~~~ 174 (231)
|+|.+++++...+..++. +...+..+++||.|+...+.........++..+.++.+++. ..|+++.|+..+.
T Consensus 79 VvDat~ler~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 79 VVDASNLERNLYLTLQLL---ELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred EecCCcchhhHHHHHHHH---hcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 999997655444444443 34566779999999865443222233356666777777665 6678888887663
No 172
>PRK11058 GTPase HflX; Provisional
Probab=99.41 E-value=1.3e-12 Score=118.03 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcccc--chhh------hhccc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF--RTIT------QSYYR 92 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~------~~~~~ 92 (231)
..+|+++|.+|||||||+|++++..+.....+....+.....+.+.+. ..+.||||+|..+. ..++ ...++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999986643212222223444455666542 25689999997321 2222 23468
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+|++|+|+|++ +++++..|...+........+.++++||.|+..
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 999999999999 667776666666655555667789999999864
No 173
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.41 E-value=2e-12 Score=110.29 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc-h-------hhhhccc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFV--EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-T-------ITQSYYR 92 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~-------~~~~~~~ 92 (231)
+|+++|.+|||||||+|++++..+. ..+..|... ....+...+. ..+.+|||||..... . ....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~--~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN--RISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC--cEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999988753 233344431 1223333332 468999999975321 1 1345678
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+|++++|+|.+ +.+ ..+...+.+ ...+.++++||.|+..
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF 121 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC
Confidence 999999999999 332 344444433 2455678999999864
No 174
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.41 E-value=1.2e-12 Score=107.75 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=76.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC-----------c------ccceeeEEEEEEEE--E---CCeEEEEEEeeCCCc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEK-----------T------GNTIGVDFSMKTVN--I---DGKKVKLQIWDTAGQ 80 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~-----------~------~pt~~~~~~~~~~~--~---~~~~~~l~i~D~~G~ 80 (231)
+|+++|..++|||||+.+++...+... + ....+..+....+. . ++..+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987544321 0 11122222222222 2 356789999999999
Q ss_pred cccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
.+|......++..+|++|+|+|.+ ++. ...|+..+.. .....++++||.|..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECcccC
Confidence 999888888999999999999998 332 2344444332 235577899999975
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.40 E-value=4e-12 Score=115.00 Aligned_cols=112 Identities=21% Similarity=0.163 Sum_probs=77.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh---------
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------- 86 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------- 86 (231)
....+||+++|.++||||||++++++... ...+..|. .+.....+..++. .+.+|||+|..++...
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt-~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~ 245 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTT-RDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSV 245 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCce-ECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHH
Confidence 34569999999999999999999998653 23333333 2344445555653 6889999997544322
Q ss_pred --hhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 87 --TQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 87 --~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
...+++.+|++|+|+|.+ +.+... +...+. ......++++||.|+.
T Consensus 246 ~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~---~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 246 LRTLKAIERADVVLLVLDATEGITEQDLR-IAGLIL---EAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH---HcCCcEEEEEECcccC
Confidence 134688999999999999 444432 333332 2345677899999987
No 176
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.39 E-value=2.2e-12 Score=104.33 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC----CCCCCc-----ccceeeEEEEEEEE----------ECCeEEEEEEeeCCCccc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG----DFVEKT-----GNTIGVDFSMKTVN----------IDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~----~f~~~~-----~pt~~~~~~~~~~~----------~~~~~~~l~i~D~~G~~~ 82 (231)
++|+++|+.++|||||+++|+.. .+...+ ..|++..+....+. .+++.+.+.+|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999972 222211 13444444433332 123467899999999876
Q ss_pred cchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 83 FRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+..........+|++++|+|.+ .......|. +.... ....++++||.|+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCC
Confidence 4333233455679999999998 233333332 12222 335668999999863
No 177
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.38 E-value=3.5e-12 Score=119.25 Aligned_cols=117 Identities=14% Similarity=0.116 Sum_probs=84.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
..+..+|+++|+.++|||||+++|.+.++...+.+.+..+.....+.+++. ..+.||||+|++.|..++..++..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 346679999999999999999999998887655544433444445555432 2789999999999999999999999999
Q ss_pred EEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 98 IIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 98 IlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|+|||.+ .. .....+.+........+.++++||.|+..
T Consensus 163 ILVVda~dgv--~~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 163 VLVVAADDGV--MPQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEECCCCC--CHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 9999998 11 11112222222233455778999999864
No 178
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=2.1e-12 Score=123.80 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=79.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceee--EEEEEEEEECCeEEEEEEeeCCCccc--------cchhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV--DFSMKTVNIDGKKVKLQIWDTAGQER--------FRTIT 87 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~--~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~ 87 (231)
.....+|+++|.++||||||++++++.+... ..++.|. +........++ ..+.+|||+|.+. +....
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i-v~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAV-VEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 3456789999999999999999999876421 2233333 33333333444 5688999999763 23344
Q ss_pred hhcccCCcEEEEEEecC-cHhhHH-HHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 88 QSYYRSANGVIIEVTSV-EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit-Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..+++.+|++|+|+|.+ .+.... .|...+++ ...+.++++||.|+..
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR---AGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh---cCCCEEEEEECccccc
Confidence 56788999999999998 555544 45555543 4567778999999864
No 179
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.38 E-value=4.4e-12 Score=121.84 Aligned_cols=147 Identities=15% Similarity=0.079 Sum_probs=99.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh----------hhhc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI----------TQSY 90 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~----------~~~~ 90 (231)
.++|+++|.+|||||||+|++++.+. ...+..|.+...+...++....++++||++|...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 47999999999999999999997654 23344555555555455555678999999998765421 2234
Q ss_pred c--cCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchh
Q psy5781 91 Y--RSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFG 166 (231)
Q Consensus 91 ~--~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~ 166 (231)
+ ..+|++++|+|.++.++...|..++.+ ...+.+++.||.|+...+.........+...+.++..++. ..|++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GId 157 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNLYLTLQLLE---LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIE 157 (772)
T ss_pred HhccCCCEEEEEecCCcchhhHHHHHHHHH---cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHH
Confidence 3 479999999999966665556666544 3456779999999865433322333356667777666665 44566
Q ss_pred hhhhhh
Q psy5781 167 HAFSTS 172 (231)
Q Consensus 167 e~f~~~ 172 (231)
+.....
T Consensus 158 eL~~~I 163 (772)
T PRK09554 158 ALKLAI 163 (772)
T ss_pred HHHHHH
Confidence 665554
No 180
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.37 E-value=6.2e-12 Score=98.42 Aligned_cols=112 Identities=19% Similarity=0.147 Sum_probs=72.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc----------hh-hh
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR----------TI-TQ 88 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----------~~-~~ 88 (231)
.+||+++|++|+|||||++++++..+.. ...+....+.....+..++. .+.+||++|..+.. .. ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999999875421 11222222333344455553 47899999964321 11 12
Q ss_pred hcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 89 SYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 89 ~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.++..+|++++|+|.+ +.... .+...+. ......++++||.|+...
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~---~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLIL---EEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHH---hcCCCEEEEEeccccCCc
Confidence 3567899999999998 44333 2222222 234566789999998754
No 181
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.35 E-value=9.1e-12 Score=96.53 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=72.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCC--cccceeeEEEEEEEEECCeEEEEEEeeCCCccccch--------hhhhc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEK--TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT--------ITQSY 90 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~--~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~ 90 (231)
..+|+++|.+|+|||||++++++..+... ...+.. ..... ........+.+||++|...... ....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR--NRIRG-IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee--ceEEE-EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 57899999999999999999998764321 112221 11111 2223347889999999754322 23456
Q ss_pred ccCCcEEEEEEecC-cHhhHH-HHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 91 YRSANGVIIEVTSV-EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 91 ~~~ad~vIlV~dit-Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+..+|++++|+|.+ .+.... .+...+.+. .....+++||.|+..
T Consensus 80 ~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGEGDEFILELLKKS---KTPVILVLNKIDLVK 125 (168)
T ss_pred HHhCCEEEEEEECCCccCchHHHHHHHHHHh---CCCEEEEEEchhccc
Confidence 88999999999999 434433 333334332 345678899999874
No 182
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.35 E-value=2e-11 Score=109.90 Aligned_cols=146 Identities=9% Similarity=0.015 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCccc-ceeeEEEEEEEEECCeEEEEEEeeCCCcc----ccchhhhhc---cc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGN-TIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSY---YR 92 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~p-t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~---~~ 92 (231)
..|+++|.++|||||||+++++.+. ...|.- |.. ...-.+.+++ ...+.|||++|.. +...+...| +.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~--PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLV--PNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceec--eEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 3899999999999999999997652 122322 222 1112333331 3568999999963 222343444 44
Q ss_pred CCcEEEEEEecC------cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--c
Q psy5781 93 SANGVIIEVTSV------EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--C 162 (231)
Q Consensus 93 ~ad~vIlV~dit------Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~ 162 (231)
+++++|+|+|++ +++++..|.+++..+.+ ..++.++++||.|+..... .. .......+..+..++. .
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e-~l--~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE-NL--EEFKEKLGPKVFPISALTG 312 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH-HH--HHHHHHhCCcEEEEeCCCC
Confidence 699999999995 56777889999988754 3566779999999854211 01 1112222233444443 5
Q ss_pred cchhhhhhhhc
Q psy5781 163 LKFGHAFSTSL 173 (231)
Q Consensus 163 ~nv~e~f~~~~ 173 (231)
.++++.+...+
T Consensus 313 eGI~eL~~~L~ 323 (424)
T PRK12297 313 QGLDELLYAVA 323 (424)
T ss_pred CCHHHHHHHHH
Confidence 56777666544
No 183
>PRK10218 GTP-binding protein; Provisional
Probab=99.33 E-value=1.3e-11 Score=115.72 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=87.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc--CCCCCCc------------ccceeeEEEEEEEEECCeEEEEEEeeCCCccccch
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS--GDFVEKT------------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT 85 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~--~~f~~~~------------~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 85 (231)
...+|+++|..++|||||+.+|+. +.|...+ ..+.|+++..+...++.+.++++||||+|+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467899999999999999999996 4443322 24556666666666666679999999999999999
Q ss_pred hhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 86 ITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 86 ~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
.+..+++.+|++|+|+|.+ -......++..+.. .....+++.||.|....+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~---~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA---YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH---cCCCEEEEEECcCCCCCc
Confidence 9999999999999999998 22223333333322 233446889999987543
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.33 E-value=5.1e-12 Score=114.34 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=74.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc--------cccchhhhhccc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ--------ERFRTITQSYYR 92 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~--------~~~~~~~~~~~~ 92 (231)
||+++|.+|||||||++++++++. ..++.. +..+.....+..++ ..+.||||+|. +.+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g-~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPG-VTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCC-cccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 589999999999999999998763 223322 22234444555665 46899999996 344455667889
Q ss_pred CCcEEEEEEecC-cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 93 SANGVIIEVTSV-EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 93 ~ad~vIlV~dit-Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.+|++++|+|.+ .+.... .+.+.+++ ..++.++++||.|+...
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~---~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWLRK---SGKPVILVANKIDGKKE 122 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHH---hCCCEEEEEECccCCcc
Confidence 999999999998 222222 22222332 24557789999998654
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.32 E-value=1.5e-11 Score=117.88 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=84.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
..+...|+++|..++|||||+++|....+.....+.+..+.....+.+++ ..++||||+|++.|..++..+++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 55778999999999999999999998777654444333233333455554 6789999999999999999999999999
Q ss_pred EEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 98 IIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 98 IlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|||||.+.- ....+.+.+........+.++++||.|+..
T Consensus 365 ILVVdAddG-v~~qT~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 365 VLVVAADDG-VMPQTIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEECCCC-CCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence 999999810 011222233333333455778999999865
No 186
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.32 E-value=1.2e-11 Score=112.94 Aligned_cols=150 Identities=9% Similarity=0.018 Sum_probs=91.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc----ccchh---hhhccc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTI---TQSYYR 92 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~---~~~~~~ 92 (231)
..+|++||.++||||||++++...+. ..+|.-|. .......+.+++ ..+.|||++|.- +...+ .-.++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTT-l~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTT-LVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCccc-ccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 45899999999999999999997643 22333222 122333445554 578999999952 11112 122467
Q ss_pred CCcEEEEEEecC-------cHhhHHHHHHHHHHhcC-----------CcceeeecccccCCCCCccccccchhhhhhcCC
Q psy5781 93 SANGVIIEVTSV-------EYCYQRNWHKQAVTLFD-----------KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAM 154 (231)
Q Consensus 93 ~ad~vIlV~dit-------Sf~~l~~w~~~i~~~~~-----------~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~ 154 (231)
+++++|+|+|++ .++++..|..+|..+.. ..++.++++||.|+.................+.
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~ 315 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW 315 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC
Confidence 899999999997 23456677778776653 346678999999997543211000001122244
Q ss_pred Ccccccc--ccchhhhhhhhc
Q psy5781 155 PFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 155 ~~~ev~~--~~nv~e~f~~~~ 173 (231)
++..++. ..++++.+...+
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ 336 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALA 336 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 4555554 456666655543
No 187
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.32 E-value=8.1e-12 Score=104.64 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-------------CCcc---cceeeEEEEEEEEECCeEEEEEEeeCCCccccchh
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFV-------------EKTG---NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~-------------~~~~---pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 86 (231)
+|+++|..|+|||||+++++...-. .++. ...+.........++.+.+++++|||+|+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999853110 0111 11122222233333334578999999999999888
Q ss_pred hhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 87 TQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 87 ~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
...+++.+|++++|+|.+ --.....|+..+.+. ..+.+++.||.|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 889999999999999999 222334555554432 344568999999875
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.30 E-value=1.9e-11 Score=117.20 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=79.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc----------cchhh
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----------FRTIT 87 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~ 87 (231)
..+||+++|.+|||||||++++++.+. ..++.+|. .+.....+.+++.. +.+|||+|..+ |..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT-~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT-RDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC-cCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence 458999999999999999999998864 34444444 35555666777754 56999999532 22221
Q ss_pred -hhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 88 -QSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 88 -~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..+++.+|++++|+|.+ +++.+..| ..+. ....+.++++||.|+..
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~-~~~~---~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVM-SMAV---DAGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEEchhcCC
Confidence 34578999999999999 66665433 3332 23567789999999865
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.30 E-value=2.4e-11 Score=113.88 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc---CCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS---GDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~---~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
+.|+++|..++|||||+++|.+ +.+.+++.+++..+.....+..++ ..+.|||++|+++|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999996 455566666666666656666665 78999999999999888888899999999
Q ss_pred EEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 99 IEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 99 lV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+|+|++ ......+.+..+.. . +.+..++++||.|+...
T Consensus 79 LVVDa~~G~~~qT~ehl~il~~-l-gi~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLAVLDL-L-GIPHTIVVITKADRVNE 118 (581)
T ss_pred EEEECCCCCcHHHHHHHHHHHH-c-CCCeEEEEEECCCCCCH
Confidence 999998 11222222222222 1 22336789999998653
No 190
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.30 E-value=1.4e-11 Score=96.42 Aligned_cols=142 Identities=10% Similarity=0.070 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc------cchhhhhcc--c
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER------FRTITQSYY--R 92 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~------~~~~~~~~~--~ 92 (231)
++|+++|.++||||||+|++++.+.. .++ |-...+.....+.+++ ..+.+.|+||.-. -..+...|+ .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~-pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNW-PGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEES-TTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCC-CCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence 68999999999999999999987642 233 3222345555667766 6789999999432 123344454 5
Q ss_pred CCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhh
Q psy5781 93 SANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 93 ~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
+.|++|.|.|.+.+++-.....++. +-..+.+++.|+.|.-....-.......++..+.++.-+.. ..++++..
T Consensus 78 ~~D~ii~VvDa~~l~r~l~l~~ql~---e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 78 KPDLIIVVVDATNLERNLYLTLQLL---ELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSSEEEEEEEGGGHHHHHHHHHHHH---HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 8999999999995443333333333 34466778899988766554444444467777766666555 44455543
No 191
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.30 E-value=1.5e-11 Score=117.02 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=85.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccce--eeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTI--GVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~--~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
..+..+|+++|..++|||||++++....+.....+.+ ....+...+..++....+.||||+|++.|..++..+++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3466799999999999999999999887765433222 22233334444455689999999999999999999999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
++|||+|.+ ..+..+.| ........+.++++||.|+...
T Consensus 321 iaILVVDA~dGv~~QT~E~I----~~~k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI----NYIQAANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEEECcCCCChhhHHHH----HHHHhcCceEEEEEECCCcccc
Confidence 999999998 22222222 2222334567789999998753
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.30 E-value=1.8e-11 Score=115.00 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=83.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC--CCC-----CCc------ccceeeEEEEEEEEE-----CCeEEEEEEeeCCCc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFV-----EKT------GNTIGVDFSMKTVNI-----DGKKVKLQIWDTAGQ 80 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~-----~~~------~pt~~~~~~~~~~~~-----~~~~~~l~i~D~~G~ 80 (231)
.+.-+|+++|..++|||||+.+|+.. .+. ..+ ..+.|+++....+.+ +++.+.++||||+|+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 45568999999999999999999863 111 111 122233333322222 566899999999999
Q ss_pred cccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.+|...+..+++.+|++|+|+|.+ ..+....|..... .....++++||.|+...
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcc
Confidence 999998999999999999999998 5555556654332 23446789999998653
No 193
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.28 E-value=3.1e-11 Score=102.85 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC-CC----------------CCccc---ceeeEEEEEEEEECCeEEEEEEeeCCCcc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGD-FV----------------EKTGN---TIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~-f~----------------~~~~p---t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 81 (231)
-+|+++|..|+|||||+++++... .. .++.+ .-+.........++.+.+++++|||+|+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 469999999999999999998421 00 11111 01122233333444456899999999999
Q ss_pred ccchhhhhcccCCcEEEEEEecC-cH-hhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 82 RFRTITQSYYRSANGVIIEVTSV-EY-CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 82 ~~~~~~~~~~~~ad~vIlV~dit-Sf-~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+|......+++.+|++|+|+|.+ .. .....|++.... ...+.++++||.|....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 88877777889999999999998 22 222334333322 23456788999997654
No 194
>KOG0072|consensus
Probab=99.28 E-value=1.8e-12 Score=98.31 Aligned_cols=115 Identities=26% Similarity=0.402 Sum_probs=90.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
.++..+|+++|..|+|||+++.++--++... ..||+| |.+.++.+ ++.++++||.+|+...+.+|+.||.+.|++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevvt-tkPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceE
Confidence 3477899999999999999999998777544 679998 66566666 558999999999999999999999999999
Q ss_pred EEEEecCcHhhHHHHHHHHHHhcCCc----ceeeecccccCCCC
Q psy5781 98 IIEVTSVEYCYQRNWHKQAVTLFDKY----KFGHAFSTSLAMPQ 137 (231)
Q Consensus 98 IlV~ditSf~~l~~w~~~i~~~~~~~----~~~~vv~~k~dl~~ 137 (231)
|+|.|.+..+++..-..++...+.+. ....++.||-|...
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG 133 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh
Confidence 99999996666654444444444332 44556677777665
No 195
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.27 E-value=2e-11 Score=94.88 Aligned_cols=106 Identities=16% Similarity=0.267 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc----------ccchhhhhccc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----------RFRTITQSYYR 92 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~~ 92 (231)
+|+++|++|+|||||++.++++.+.....++.+.+.....+..++ .+.+||++|.. .+......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999998777777777777555544444443 78999999832 34444455554
Q ss_pred ---CCcEEEEEEecC-cH----hhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 93 ---SANGVIIEVTSV-EY----CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 93 ---~ad~vIlV~dit-Sf----~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..+++++++|.+ .. ..+..|+... ..+..++.||.|+..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~ 124 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLK 124 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCC
Confidence 356889999998 21 2223444332 244567889988853
No 196
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.27 E-value=1.6e-11 Score=114.82 Aligned_cols=111 Identities=19% Similarity=0.098 Sum_probs=75.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEEEEE------------ECCeEEEEEEeeCCCccccchh
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTVN------------IDGKKVKLQIWDTAGQERFRTI 86 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~~~~------------~~~~~~~l~i~D~~G~~~~~~~ 86 (231)
-|+++|..++|||||++++.+..+... +.+++|..+...... ++.....+.||||+|++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 599999999999999999998877543 334455333211110 0001123889999999999999
Q ss_pred hhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 87 TQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 87 ~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+..+++.+|++++|||++ +.+....+ ..++ ....+.++++||.|+..
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~---~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEAL-NILR---MYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHH---HcCCCEEEEEECCCccc
Confidence 999999999999999998 22222211 1222 12345678999999863
No 197
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.24 E-value=2.4e-11 Score=90.45 Aligned_cols=87 Identities=23% Similarity=0.087 Sum_probs=66.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-cceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTG-NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~-pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
+||+++|+.|||||+|+.||....|...+. +|++ +..+...+++.++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 599999999999999999998888865554 5544 444557788899999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|+.+ +++.+ |...+......+....++++|.|+..
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEE 91 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHh
Confidence 9999 55554 88877665555555667778887744
No 198
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.23 E-value=5.8e-11 Score=96.64 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=70.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceee-EEEEEEEEEC-CeEEEEEEeeCCCccccchh-----hhhcccC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV-DFSMKTVNID-GKKVKLQIWDTAGQERFRTI-----TQSYYRS 93 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~-~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~-----~~~~~~~ 93 (231)
.+||+++|++|||||||+|.+++..+.....++.+. +.......+. .....+.+||++|....... ....+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 379999999999999999999986654433333331 1110111111 11236899999997543222 2233677
Q ss_pred CcEEEEEEecCcHhhHH-HHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 94 ANGVIIEVTSVEYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 94 ad~vIlV~ditSf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+|++++|.| ..|...+ .|++.+.+. ....++++||.|...
T Consensus 81 ~d~~l~v~~-~~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~ 121 (197)
T cd04104 81 YDFFIIISS-TRFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDL 121 (197)
T ss_pred cCEEEEEeC-CCCCHHHHHHHHHHHHh---CCCEEEEEecccchh
Confidence 899888843 3555554 566666554 234578999999843
No 199
>KOG0076|consensus
Probab=99.23 E-value=1.2e-11 Score=96.75 Aligned_cols=116 Identities=18% Similarity=0.310 Sum_probs=81.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC---C----CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG---D----FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSY 90 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~---~----f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 90 (231)
....|.|+++|..++|||+|+.+.-.. . -+.+..||+|.+ ..++.++ ...+.+||.+||+..+++|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn--ig~i~v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN--IGTIEVC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee--ecceeec--cceeEEEEcCChHHHHHHHHHH
Confidence 445688999999999999999776432 1 134566888844 4466665 4679999999999999999999
Q ss_pred ccCCcEEEEEEecCcHhhHHHHHHHHHHhcC----CcceeeecccccCCCC
Q psy5781 91 YRSANGVIIEVTSVEYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 91 ~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~ 137 (231)
|..++++|+++|.+.-+++++-...+++... ...+.++.+||-|+..
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN 140 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh
Confidence 9999999999999944444433333333322 2333445556655544
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.22 E-value=7.4e-11 Score=106.88 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=78.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHc--CCCCC-----------------------------CcccceeeEEEEEEEEE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRS--GDFVE-----------------------------KTGNTIGVDFSMKTVNI 65 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~--~~f~~-----------------------------~~~pt~~~~~~~~~~~~ 65 (231)
.....++|+++|..++|||||+.+++. +.... +....+..+.....+
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~-- 80 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF-- 80 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE--
Confidence 345679999999999999999999985 22211 111223333333333
Q ss_pred CCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHhhHHHHHHH--HHHhcCCcceeeecccccCCCC
Q psy5781 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQ--AVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 66 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~--i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
....+.+.|||++|+++|.......+..+|++|+|+|.+ .++....+... +.+... .+..++++||.|+..
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVN 155 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccC
Confidence 334578999999999988766566778999999999999 33322222222 223332 345668999999863
No 201
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.21 E-value=7e-11 Score=110.78 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=83.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc--CCCCCCc------------ccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhh
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS--GDFVEKT------------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQ 88 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~--~~f~~~~------------~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 88 (231)
+|+++|..++|||||+.+++. +.+.... ....|++...+...++.+.++++||||+|+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999986 4443211 12223344444444444558999999999999998889
Q ss_pred hcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 89 SYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 89 ~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.+++.+|+++||+|.+ .......|+..+... ..+.+++.||.|+...
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---GLKPIVVINKIDRPSA 131 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---CCCEEEEEECCCCCCc
Confidence 9999999999999998 455556666666542 2345789999998654
No 202
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.21 E-value=1.1e-10 Score=89.30 Aligned_cols=110 Identities=10% Similarity=0.056 Sum_probs=70.4
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch-------hhhhcccCCcEE
Q psy5781 26 LIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT-------ITQSYYRSANGV 97 (231)
Q Consensus 26 vlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~~~ad~v 97 (231)
++|..|+|||||++++++.... ....+.............+. ...+.+||++|...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976544 21222111122222223221 46899999999876543 334578899999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
++|+|.+ +..... |.... .......+++.||.|+.....
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~---~~~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELL---RERGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHH---HhcCCeEEEEEEccccCChhh
Confidence 9999999 222222 23222 234555778999999876543
No 203
>PRK00089 era GTPase Era; Reviewed
Probab=99.20 E-value=1.4e-10 Score=99.84 Aligned_cols=113 Identities=11% Similarity=0.091 Sum_probs=72.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCC--CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc--------hhhhh
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVE--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--------TITQS 89 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~~~ 89 (231)
+.-.|+++|.+|||||||++++++..+.. ....|.. .....+... ....+.+|||+|..... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~--~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR--HRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc--ccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 34569999999999999999999876532 1222222 111122222 23679999999964322 22344
Q ss_pred cccCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 90 YYRSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 90 ~~~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+..+|++++|+|++ .+.....++..... ....+.++++||.|+..
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~--~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLK--KVKTPVILVLNKIDLVK 127 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHh--hcCCCEEEEEECCcCCC
Confidence 678999999999999 44444433333222 22456678899999974
No 204
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.19 E-value=7.3e-11 Score=97.91 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=73.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--CCC----------------cccceeeEEEEEEEEE--------CCeEEEEEEee
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF--VEK----------------TGNTIGVDFSMKTVNI--------DGKKVKLQIWD 76 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f--~~~----------------~~pt~~~~~~~~~~~~--------~~~~~~l~i~D 76 (231)
+|+++|..+.|||||+.+++...- ... ...|+. .....+.. +++.+.+.|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~--~~~~~~~~~~~~~~~~~~~~~~i~iiD 79 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMK--SSAISLYFEYEEEDKADGNEYLINLID 79 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccc--cceEEEEEecCcccccCCCceEEEEEC
Confidence 689999999999999999985321 100 001111 11111222 24578999999
Q ss_pred CCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 77 TAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 77 ~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
|+|+.+|......+++.+|++|+|||++ +.+. ...++.........++++||.|+.
T Consensus 80 TPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t----~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 80 SPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT----ETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH----HHHHHHHHHcCCCEEEEEECCCcc
Confidence 9999999999999999999999999999 3332 222222222334577899999976
No 205
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.17 E-value=4.4e-10 Score=83.40 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=63.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc----------cchhhhhc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----------FRTITQSY 90 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~ 90 (231)
||+++|.+|+|||||++.+++... .....++.. ......+.+++.. +.++||+|-.. +......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~-~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~- 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTR-DPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQ- 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSS-SEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccccccee-eeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHH-
Confidence 799999999999999999997543 222333332 1222445566644 46999999532 1123333
Q ss_pred ccCCcEEEEEEecCc--HhhHHHHHHHHHHhcCCcceeeecccc
Q psy5781 91 YRSANGVIIEVTSVE--YCYQRNWHKQAVTLFDKYKFGHAFSTS 132 (231)
Q Consensus 91 ~~~ad~vIlV~ditS--f~~l~~w~~~i~~~~~~~~~~~vv~~k 132 (231)
+..+|++++|+|.+. -+.....+++++ ..+..+++.||
T Consensus 77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPITEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSHHHHHHHHHHHH----TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHh----cCCCEEEEEcC
Confidence 489999999999773 122334444441 44445555554
No 206
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=3.6e-10 Score=89.31 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=86.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCC--------CCc----ccceeeEEEEEEEEECCeEEEEEEeeCCCccccc
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV--------EKT----GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~--------~~~----~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 84 (231)
...+..||+|.|+-++|||++++++.+.... ..+ .-|+.+|+. ...+++ ...++++|||||++|+
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g--~~~~~~-~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDE-DTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc--ceEEcC-cceEEEecCCCcHHHH
Confidence 3557789999999999999999999877631 111 235565665 333333 3679999999999999
Q ss_pred hhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccc
Q psy5781 85 TITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPC 141 (231)
Q Consensus 85 ~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~ 141 (231)
-+|..+.+.+.++|++.|.+ .+ .....+.-+..... .+..+..||.|+....+-
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~pp 139 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDALPP 139 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCCCH
Confidence 99999999999999999999 55 22333333322211 445677899999987764
No 207
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.16 E-value=2e-10 Score=94.31 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CC------------------------------CcccceeeEEEEEEEEECCeEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF-VE------------------------------KTGNTIGVDFSMKTVNIDGKKVK 71 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f-~~------------------------------~~~pt~~~~~~~~~~~~~~~~~~ 71 (231)
||+++|..++|||||+++++...- .. +..+.+..+.....+..+ ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 689999999999999999975321 11 000111112222223333 357
Q ss_pred EEEeeCCCccccchhhhhcccCCcEEEEEEecC-cH-hhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 72 LQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-EY-CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 72 l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-Sf-~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+.||||+|+++|.......++.+|++|+|+|.+ .. +........+ +... .+..+++.||.|+..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~-~~~~-~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYIL-SLLG-IRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHH-HHcC-CCcEEEEEEchhccc
Confidence 889999999987665666789999999999998 22 2222222222 2221 233556899999864
No 208
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.15 E-value=4.1e-10 Score=102.16 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=73.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch----------h
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT----------I 86 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------~ 86 (231)
...+||+++|.+|||||||++++++... ......|. .+.....+..++ ..+.+|||+|..+... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt-~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTT-RDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCce-EEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 3579999999999999999999997542 22232232 233334444555 4578999999643211 1
Q ss_pred -hhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 87 -TQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 87 -~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
...+++.+|++|+|+|.+ +..... +...+.+ .....++++||.|+..
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCC
Confidence 124678999999999999 444432 2223322 3455778999999863
No 209
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.15 E-value=2.9e-10 Score=94.70 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=70.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc---ccceeeEEEEEEEEECCeEEEEEEeeCCCccccch-----hhhhcccCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKT---GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT-----ITQSYYRSA 94 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~---~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~~a 94 (231)
||+++|..++||||+.+....+--+.+. .+|+.++. ..+...+ .+.++|||+||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~--~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK--SHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE--EEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE--EEEecCC-CcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 8999999999999998888866443332 25555332 2333232 47899999999975533 357789999
Q ss_pred cEEEEEEecC------cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 95 NGVIIEVTSV------EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 95 d~vIlV~dit------Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.++|+|+|+. ....+...++.+.+..++.++ .++.-|.|+..
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v-~vfiHK~D~l~ 125 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKV-FVFIHKMDLLS 125 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EE-EEEEE-CCCS-
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeE-EEEEeecccCC
Confidence 9999999999 333444555556665555544 46667777754
No 210
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.14 E-value=3.1e-10 Score=92.78 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC---CCCcc--cceeeEEEEEEEE-------------------E----C--C----
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF---VEKTG--NTIGVDFSMKTVN-------------------I----D--G---- 67 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f---~~~~~--pt~~~~~~~~~~~-------------------~----~--~---- 67 (231)
++|.++|..|+|||||+..+..-.. ..+.. .++...+..-.+. . . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999964311 11111 1111111110000 0 0 1
Q ss_pred eEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCc--H-hhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVE--Y-CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 68 ~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditS--f-~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
....+.||||+|++.+.......+..+|++++|+|.+. . ......+..+.. . +.+..+++.||.|+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~-~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-M-GLKHIIIVQNKIDLVK 151 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-c-CCCcEEEEEEchhccC
Confidence 12678999999999887777777888999999999982 1 111122222221 1 2234568999999864
No 211
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.14 E-value=6.9e-11 Score=94.64 Aligned_cols=115 Identities=22% Similarity=0.298 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEE-CCeEEEEEEeeCCCccccchh-hhh--cccCCcEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERFRTI-TQS--YYRSANGV 97 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~-~~~--~~~~ad~v 97 (231)
-.|+++|++|+|||+|..++.++.+.+.+.+. .... .+.+ +.....+.+.|+||+++.+.. ... +..++.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 35899999999999999999999776654443 2111 1122 223456899999999988763 333 58899999
Q ss_pred EEEEecC----cHhhHHHHHHHHHHhc---CCcceeeecccccCCCCCcc
Q psy5781 98 IIEVTSV----EYCYQRNWHKQAVTLF---DKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 98 IlV~dit----Sf~~l~~w~~~i~~~~---~~~~~~~vv~~k~dl~~~~~ 140 (231)
|+|.|.+ ....+.+.+-++.... ....+++++.||-|+...++
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 9999998 3344445444443333 35566778899999887665
No 212
>KOG0077|consensus
Probab=99.13 E-value=1.2e-10 Score=90.53 Aligned_cols=115 Identities=15% Similarity=0.232 Sum_probs=90.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
+.=|++++|..++|||||++.+-+++.. ++.||.... .....+.| ++++-+|.+|+..-+..|..|+..+|++|+
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 4559999999999999999999988754 466766522 23456655 788999999999999999999999999999
Q ss_pred EEecCcHhhHHHHHHHHHHhcC----CcceeeecccccCCCCCc
Q psy5781 100 EVTSVEYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 100 V~ditSf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~~~ 139 (231)
.+|.-..++..+-+.++..... ...+..+++||+|.+...
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 9999966666666666655543 344566889999888743
No 213
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.13 E-value=2.4e-10 Score=97.32 Aligned_cols=110 Identities=18% Similarity=0.248 Sum_probs=72.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-------------Ccc-----cceeeEEEEEEEEECCeEEEEEEeeCCCccccc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVE-------------KTG-----NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~-------------~~~-----pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 84 (231)
+|+++|.+|+|||||+++++...... ++. ..+.+......+..+ .+.+.+|||+|..++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 58999999999999999997532110 000 011111222233343 4788999999998887
Q ss_pred hhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 85 TITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 85 ~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.....+++.+|++++|+|.+ .......|. .+.. ...+.+++.||.|....
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEECCccCCC
Confidence 77888999999999999999 222222332 2322 23445678999998754
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.13 E-value=3.6e-10 Score=105.92 Aligned_cols=114 Identities=18% Similarity=0.060 Sum_probs=75.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEEEEEE--CCeEE----------EEEEeeCCCccc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTVNI--DGKKV----------KLQIWDTAGQER 82 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~~~~~--~~~~~----------~l~i~D~~G~~~ 82 (231)
.+...|+++|..++|||||++++.+..+... +.+++|..+....... .+..+ .+.+|||+|++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3445799999999999999999986654332 2235553332211100 11111 268999999999
Q ss_pred cchhhhhcccCCcEEEEEEecC-c--HhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 83 FRTITQSYYRSANGVIIEVTSV-E--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~dit-S--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
|..++...++.+|++++|+|.+ . .+... .+..+.. ...+.++++||.|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e-~i~~~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIE-AINILKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHH-HHHHHHH---cCCCEEEEEECcCCc
Confidence 9999888899999999999998 1 22211 1222222 234467899999985
No 215
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.13 E-value=5.9e-10 Score=93.17 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=56.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc----h---hhhhcccCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR----T---ITQSYYRSA 94 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~---~~~~~~~~a 94 (231)
||+++|.+|||||||++++.+... ...+..+. .+.....+.+++ ..+++||++|..+.. . ....+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 799999999999999999997653 23333222 123344555655 678999999975322 1 234578999
Q ss_pred cEEEEEEecC
Q psy5781 95 NGVIIEVTSV 104 (231)
Q Consensus 95 d~vIlV~dit 104 (231)
|++++|+|.+
T Consensus 79 d~il~V~D~t 88 (233)
T cd01896 79 DLILMVLDAT 88 (233)
T ss_pred CEEEEEecCC
Confidence 9999999998
No 216
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.13 E-value=4.3e-10 Score=100.62 Aligned_cols=115 Identities=11% Similarity=-0.010 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc----hh---hhhcccC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR----TI---TQSYYRS 93 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~---~~~~~~~ 93 (231)
..|.+||.++||||||++++++.+. ...|.-|.- ....-.+..++ ...+.++|+||.-+-. .+ ...++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~-~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTL-VPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCcc-CcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 3899999999999999999997653 122332221 11222333332 2458899999964311 11 1235788
Q ss_pred CcEEEEEEecC------cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCC
Q psy5781 94 ANGVIIEVTSV------EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 94 ad~vIlV~dit------Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~ 138 (231)
++++++|+|++ .++++..|++++..... ..++.+++.||.|+...
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 99999999987 45667788888887643 24556788899998643
No 217
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.13 E-value=4.3e-10 Score=100.51 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=84.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCC--CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh--------hh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD--FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQ 88 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~ 88 (231)
+.-+|++++|.||||||||+|.+++.+ ...+..-|.. |.-...+.++| +.+.|.||+|..+-... ..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTR-Dviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTR-DVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCcc-ceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHH
Confidence 345899999999999999999999754 3455555654 66667788888 88999999997654433 34
Q ss_pred hcccCCcEEEEEEecCc-HhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 89 SYYRSANGVIIEVTSVE-YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 89 ~~~~~ad~vIlV~ditS-f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
..+.+||.+++|+|.+. ...... .+.......+..+++.||.|+.....
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~---~~~~~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDL---ALIELLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhH---HHHHhcccCCCEEEEEechhcccccc
Confidence 56889999999999993 122111 11114456666779999999988544
No 218
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.13 E-value=3.8e-10 Score=104.52 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=80.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHc-CCCCC----------------Cc---ccceeeEEEEEEEEECCeEEEEEEee
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRS-GDFVE----------------KT---GNTIGVDFSMKTVNIDGKKVKLQIWD 76 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~-~~f~~----------------~~---~pt~~~~~~~~~~~~~~~~~~l~i~D 76 (231)
+..+..+|+++|..++|||||+.+++. ..... ++ ...-|+.+......++.+.+.+.+||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 345678999999999999999999863 11111 00 11223333334444555568999999
Q ss_pred CCCccccchhhhhcccCCcEEEEEEecC-cHh-hHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 77 TAGQERFRTITQSYYRSANGVIIEVTSV-EYC-YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 77 ~~G~~~~~~~~~~~~~~ad~vIlV~dit-Sf~-~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|+|+.+|......+++.+|++|+|+|.+ ..+ ....+++..+. ...+.+++.||.|+..
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 9999988876777889999999999999 333 23444443322 3455778999999864
No 219
>PRK13351 elongation factor G; Reviewed
Probab=99.12 E-value=2.3e-10 Score=109.51 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=79.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCC-------------CCC-------CcccceeeEEEEEEEEECCeEEEEEEeeCC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD-------------FVE-------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~-------------f~~-------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~ 78 (231)
+...+|+|+|..++|||||+++|+... +.. ++..|+. .....+.. ..+.+++|||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~--~~~~i~liDtP 81 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDW--DNHRINLIDTP 81 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEE--CCEEEEEEECC
Confidence 457899999999999999999998531 111 1223333 22223333 35789999999
Q ss_pred CccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 79 GQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 79 G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
|+.+|...+..+++.+|++|+|+|.+ ..+....|. .+.. ...+.++++||.|+...
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh---cCCCEEEEEECCCCCCC
Confidence 99999888899999999999999998 444444443 3322 23456689999998753
No 220
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.12 E-value=5.3e-10 Score=101.27 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=75.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCC--CCC------------------------Cc---ccceeeEEEEEEEEECCe
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD--FVE------------------------KT---GNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~--f~~------------------------~~---~pt~~~~~~~~~~~~~~~ 68 (231)
....++|+++|..++|||||+++++... ... +. ...-|.........++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4556999999999999999999998321 100 00 001122222222333344
Q ss_pred EEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCc---HhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVE---YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditS---f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+.+.||||+|+++|.......++.+|++|+|+|.+. +.....+...+.+... .+..+++.||.|+..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEcccccc
Confidence 5789999999998876655555789999999999982 2222222222222222 234667999999864
No 221
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.07 E-value=6.3e-10 Score=103.06 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=78.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc--CCC--------------C-CCcc---cceeeEEEEEEEEECCeEEEEEEeeC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS--GDF--------------V-EKTG---NTIGVDFSMKTVNIDGKKVKLQIWDT 77 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~--~~f--------------~-~~~~---pt~~~~~~~~~~~~~~~~~~l~i~D~ 77 (231)
-.+..+|+++|..++|||||+.+++. +.. . .++. ..-|+.+......++.+.+.+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 34677999999999999999999973 110 0 0111 11122222223333334588999999
Q ss_pred CCccccchhhhhcccCCcEEEEEEecC-cH-hhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 78 AGQERFRTITQSYYRSANGVIIEVTSV-EY-CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 78 ~G~~~~~~~~~~~~~~ad~vIlV~dit-Sf-~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
+|+.+|......+++.+|++|+|+|.+ .. .....++.... ....+.+++.||.|.....
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~---~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCR---LRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHH---hcCCCEEEEEECCcccccC
Confidence 999998887777899999999999998 22 12233333322 2345577889999976533
No 222
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.06 E-value=3.5e-10 Score=98.51 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=59.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC------CCcccceeeEEEEEE---------------EEECC-eEEEEEEeeCCCc-
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSGDFV------EKTGNTIGVDFSMKT---------------VNIDG-KKVKLQIWDTAGQ- 80 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~~f~------~~~~pt~~~~~~~~~---------------~~~~~-~~~~l~i~D~~G~- 80 (231)
|+++|.++||||||++++++..+. ..+.|++|..+.... ...++ +.+.++|||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999988643 345677775443211 11233 3478999999997
Q ss_pred ---cccchhhhhc---ccCCcEEEEEEecC
Q psy5781 81 ---ERFRTITQSY---YRSANGVIIEVTSV 104 (231)
Q Consensus 81 ---~~~~~~~~~~---~~~ad~vIlV~dit 104 (231)
+++..+...+ +++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5555555554 89999999999997
No 223
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.06 E-value=8.1e-10 Score=98.49 Aligned_cols=107 Identities=15% Similarity=0.079 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc---------hhhhhc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR---------TITQSY 90 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~~ 90 (231)
..|+++|.++||||||.||+++.+. ..++.-+.. |.......+.+ ..+.+.||+|-+... ......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTR-Dr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTR-DRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCcc-CCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 5799999999999999999998764 344443332 34445556655 448999999966322 224556
Q ss_pred ccCCcEEEEEEecC-----cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 91 YRSANGVIIEVTSV-----EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 91 ~~~ad~vIlV~dit-----Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+..||++|||+|.. .-+.+.+|+. ...++.+++.||.|...
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNLK 126 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCch
Confidence 77999999999998 2233334333 34466779999999884
No 224
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.04 E-value=6.3e-10 Score=106.87 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=81.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcC---------------CCCCC---cccceeeEEEEEEEEECCeEEEEEEeeCC
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSG---------------DFVEK---TGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~---------------~f~~~---~~pt~~~~~~~~~~~~~~~~~~l~i~D~~ 78 (231)
......+|+++|..++|||||+.+|+.. .+.++ ...|+........+..++..+.+.||||+
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 3456789999999999999999999852 22211 22355433333334456777999999999
Q ss_pred CccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 79 GQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 79 G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|+.+|.......++.+|++|+|+|.. ..+....|.. +. ......+++.||.|...
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcCCCEEEEEEChhccc
Confidence 99998888888999999999999998 2333223332 11 22233458899998753
No 225
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.01 E-value=3.7e-09 Score=90.22 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=72.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC--C----------------CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF--V----------------EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f--~----------------~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 84 (231)
+|+++|..++|||||+++++...- . .+....+.++.....+..+ ...+.+|||||..++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 489999999999999999974211 0 0011111112222333343 4778999999999888
Q ss_pred hhhhhcccCCcEEEEEEecC-cHh-hHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 85 TITQSYYRSANGVIIEVTSV-EYC-YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 85 ~~~~~~~~~ad~vIlV~dit-Sf~-~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..+..+++.+|++|+|.|.+ ..+ .-...++.+.. ...+.+++.||.|+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88889999999999999998 221 11233333322 2344568899999875
No 226
>KOG1707|consensus
Probab=99.00 E-value=2.7e-09 Score=97.20 Aligned_cols=121 Identities=12% Similarity=0.178 Sum_probs=92.2
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc
Q psy5781 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92 (231)
Q Consensus 13 ~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 92 (231)
...++.++.+++.|+|..++|||.|++.|+++.+...+..+....+....+.+.|+...+.+-|.+-. ....+...- .
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~ 494 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A 494 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence 34567889999999999999999999999999988877777777777788888888889999998765 333343333 7
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.||+++++||++ ||+.+...++.-... ...+...++.|.|+..
T Consensus 495 ~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 495 ACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDE 540 (625)
T ss_pred eeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccch
Confidence 899999999999 888776655544322 3334556666666655
No 227
>COG1159 Era GTPase [General function prediction only]
Probab=98.99 E-value=3.4e-09 Score=89.97 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=91.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc--------hhhhh
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--------TITQS 89 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~~~ 89 (231)
+.--|+++|.++||||||+|++++.+. ......|.. ...+-+...+ ...+.+.||||-.+-+ .....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR--~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR--NRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh--hheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 445799999999999999999998775 233333433 2223333333 5778999999954322 22345
Q ss_pred cccCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc-----cc
Q psy5781 90 YYRSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP-----CL 163 (231)
Q Consensus 90 ~~~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~-----~~ 163 (231)
.+..+|+++||.|.+ .+..-.+|.-+..+. ...+.+++.||+|........ ...........++.+++. ..
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeeccccC
Confidence 677999999999999 566555554443332 344566889999976644421 122234444455556554 34
Q ss_pred chhhhhhhh
Q psy5781 164 KFGHAFSTS 172 (231)
Q Consensus 164 nv~e~f~~~ 172 (231)
|++......
T Consensus 159 n~~~L~~~i 167 (298)
T COG1159 159 NVDTLLEII 167 (298)
T ss_pred CHHHHHHHH
Confidence 455544443
No 228
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.98 E-value=1.7e-09 Score=87.22 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=75.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCC--C------------------CcccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV--E------------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~--~------------------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
...+|+++|..++|||||+.+++...-. . +..-|+. .....+..+.....++++|+||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~--~~~~~~~~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITID--LSFISFEKNENNRKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSS--SEEEEEEBTESSEEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccc--cccccccccccccceeeccccc
Confidence 4689999999999999999999854311 0 0112222 2222333124457899999999
Q ss_pred ccccchhhhhcccCCcEEEEEEecC-cHhh-HHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 80 QERFRTITQSYYRSANGVIIEVTSV-EYCY-QRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 80 ~~~~~~~~~~~~~~ad~vIlV~dit-Sf~~-l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
+.+|.......++.+|++|+|.|.. .... ..+.+..+. ....+.+++.||.|..
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~---~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILR---ELGIPIIVVLNKMDLI 135 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHH---HTT-SEEEEEETCTSS
T ss_pred ccceeecccceecccccceeeeeccccccccccccccccc---ccccceEEeeeeccch
Confidence 9998887788899999999999998 3222 222232332 2233377899999988
No 229
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.98 E-value=8.6e-09 Score=88.93 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=71.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh-------h
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI-------T 87 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~ 87 (231)
.+...++|+++|.+||||||++|++++.+. .....+ .+..........+| ..+.++||+|..+.... .
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s-~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS-EGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-cceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHH
Confidence 346789999999999999999999997653 222221 11111112223344 67999999996643211 1
Q ss_pred hhcc--cCCcEEEEEEecC--cHhhH-HHHHHHHHHhcCCcce--eeecccccCCC
Q psy5781 88 QSYY--RSANGVIIEVTSV--EYCYQ-RNWHKQAVTLFDKYKF--GHAFSTSLAMP 136 (231)
Q Consensus 88 ~~~~--~~ad~vIlV~dit--Sf~~l-~~w~~~i~~~~~~~~~--~~vv~~k~dl~ 136 (231)
..++ ...|++++|.+++ .+... ...++.+...+++... .+++.+..+..
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 2222 1589999997766 44433 4566667776654322 45566665544
No 230
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.96 E-value=6.6e-09 Score=97.97 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=72.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc---CCCCCCc--ccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS---GDFVEKT--GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~---~~f~~~~--~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
-|.++|..++|||||++++.+ +.+.++. -.|+...+ ..+...+ ...+.|||++|+++|.......+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~--~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGY--AYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeee--EEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 478999999999999999985 4454443 34444322 2333322 23479999999999877666778899999
Q ss_pred EEEEecC-cH-hhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 98 IIEVTSV-EY-CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 98 IlV~dit-Sf-~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
++|+|.+ .. ..-.+.+..+ +... .+..+++.||.|+..
T Consensus 79 lLVVda~eg~~~qT~ehl~il-~~lg-i~~iIVVlNKiDlv~ 118 (614)
T PRK10512 79 LLVVACDDGVMAQTREHLAIL-QLTG-NPMLTVALTKADRVD 118 (614)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHcC-CCeEEEEEECCccCC
Confidence 9999998 11 1111222222 2222 333468999999864
No 231
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.94 E-value=5.8e-09 Score=84.03 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=80.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC----------ccccchhhh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG----------QERFRTITQ 88 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~ 88 (231)
+...-|+++|.++||||||||.+++.+-......|.|.+.....+.++++ +.+.|.|| ++.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 35678999999999999999999997766667788887676667777664 78999998 445666777
Q ss_pred hcccC---CcEEEEEEecC-cHhhH----HHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 89 SYYRS---ANGVIIEVTSV-EYCYQ----RNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 89 ~~~~~---ad~vIlV~dit-Sf~~l----~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.|++. -.+++++.|+. -...+ -+|+.+ .....+++.+|.|-..
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~------~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE------LGIPVIVVLTKADKLK 149 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEccccCC
Confidence 77764 46889999998 33322 244433 2445667888876554
No 232
>KOG1423|consensus
Probab=98.94 E-value=2.4e-09 Score=91.05 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc--cceeeEEEEEEEEECCeEEEEEEeeCCCccc----
Q psy5781 9 HPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTG--NTIGVDFSMKTVNIDGKKVKLQIWDTAGQER---- 82 (231)
Q Consensus 9 ~~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~--pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~---- 82 (231)
..++.+.++..+.+.|+|||.++||||+|.|++++.+...... .|.. ...--+ +......+.++||+|--.
T Consensus 60 ~~esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr--~~ilgi-~ts~eTQlvf~DTPGlvs~~~~ 136 (379)
T KOG1423|consen 60 ALESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTR--HRILGI-ITSGETQLVFYDTPGLVSKKMH 136 (379)
T ss_pred cccCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCcccccccccccee--eeeeEE-EecCceEEEEecCCcccccchh
Confidence 3456666778899999999999999999999999887643221 2221 111111 223457789999999421
Q ss_pred --cch------hhhhcccCCcEEEEEEecC
Q psy5781 83 --FRT------ITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 83 --~~~------~~~~~~~~ad~vIlV~dit 104 (231)
+.. -....+.+||.++.|+|++
T Consensus 137 r~~~l~~s~lq~~~~a~q~AD~vvVv~Das 166 (379)
T KOG1423|consen 137 RRHHLMMSVLQNPRDAAQNADCVVVVVDAS 166 (379)
T ss_pred hhHHHHHHhhhCHHHHHhhCCEEEEEEecc
Confidence 111 1233566899999999999
No 233
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.94 E-value=3.6e-09 Score=87.52 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=68.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC---------------------------CCC----CcccceeeEEEEEEEEECCeEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD---------------------------FVE----KTGNTIGVDFSMKTVNIDGKKVK 71 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~---------------------------f~~----~~~pt~~~~~~~~~~~~~~~~~~ 71 (231)
+|+++|..++|||||+.+++... +.+ +....+-.+.....+.. ....
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~--~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET--EKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee--CCeE
Confidence 48999999999999999996321 000 00011111222223333 4478
Q ss_pred EEEeeCCCccccchhhhhcccCCcEEEEEEecC--cH----hh---HHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 72 LQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EY----CY---QRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 72 l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf----~~---l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+.+||++|+..|.......+..+|++|+|+|.+ .+ .. ........ +.. ..+..+++.||.|+..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEcccccc
Confidence 999999999887766666778899999999998 22 21 11111112 222 2245667999999873
No 234
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.94 E-value=3.3e-09 Score=92.58 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=54.4
Q ss_pred EEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcH----------hhHHHHHHHHHHhcC----CcceeeecccccC
Q psy5781 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEY----------CYQRNWHKQAVTLFD----KYKFGHAFSTSLA 134 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf----------~~l~~w~~~i~~~~~----~~~~~~vv~~k~d 134 (231)
.+.+.+||++|+...+..|.+|+.+++++|+|.|++.| +++.+-+..+...+. ...+.++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 47899999999999999999999999999999999954 455555555555444 3456778889988
Q ss_pred CCC
Q psy5781 135 MPQ 137 (231)
Q Consensus 135 l~~ 137 (231)
+..
T Consensus 240 ~f~ 242 (317)
T cd00066 240 LFE 242 (317)
T ss_pred HHH
Confidence 654
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.93 E-value=6.7e-09 Score=93.27 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=73.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC-------CC-----CCC--cccceeeEEEEEEEEECCeEEEEEEeeCCCcccc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG-------DF-----VEK--TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~-------~f-----~~~--~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 83 (231)
....++|+++|..++|||||+.++++. .+ .+. ....-|.......+.++.....+.||||+|+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 455799999999999999999999732 00 000 0011122222333444445567899999999988
Q ss_pred chhhhhcccCCcEEEEEEecCc--HhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 84 RTITQSYYRSANGVIIEVTSVE--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 84 ~~~~~~~~~~ad~vIlV~ditS--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..........+|++++|+|.+. ...-.+.+..+... ..+..+++.||.|+..
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--GVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEecccCC
Confidence 6554555667899999999981 11222222223221 2333446789999864
No 236
>PRK12735 elongation factor Tu; Reviewed
Probab=98.91 E-value=1.2e-08 Score=91.64 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=72.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC-------CCC-----C--CcccceeeEEEEEEEEECCeEEEEEEeeCCCcccc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG-------DFV-----E--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~-------~f~-----~--~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 83 (231)
....++|+++|..++|||||++++++. .+. + .....-|.........+......+.++||+|+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 456799999999999999999999852 110 0 00011222222223333333456789999999887
Q ss_pred chhhhhcccCCcEEEEEEecC-cH-hhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 84 RTITQSYYRSANGVIIEVTSV-EY-CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 84 ~~~~~~~~~~ad~vIlV~dit-Sf-~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
......-+..+|++++|+|.+ .. ....+.+..+.. .+.+.++++.||.|+..
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcc
Confidence 665556677899999999998 22 222222222221 12233445789999863
No 237
>PLN03126 Elongation factor Tu; Provisional
Probab=98.90 E-value=8.1e-09 Score=94.66 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=75.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC------CCCCCc--------ccceeeEEEEEEEEECCeEEEEEEeeCCCcccc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG------DFVEKT--------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~------~f~~~~--------~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 83 (231)
....++|+++|..++|||||+.+++.. .....+ ....|+........+..+...+.++|++|+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 456789999999999999999999852 111100 111222222222223233457899999999988
Q ss_pred chhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 84 RTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 84 ~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
......-+..+|++++|+|.+ -...-.+++..+... ..+..+++.||.|+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEecccccC
Confidence 766666677899999999988 222223333333322 2233557899999864
No 238
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.90 E-value=1.3e-08 Score=82.81 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=72.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCC-------CC----CCcc---cceeeEEEEEEEEECCeEEEEEEeeCCCccccchh
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGD-------FV----EKTG---NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~-------f~----~~~~---pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 86 (231)
.++|+++|..++|||||+.+++... .. -+.. ..-|................+.+.||+|..+|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999998531 00 0000 11122233333334344567889999999888776
Q ss_pred hhhcccCCcEEEEEEecC-cHhh-HHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 87 TQSYYRSANGVIIEVTSV-EYCY-QRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 87 ~~~~~~~ad~vIlV~dit-Sf~~-l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
....+..+|++++|+|.+ .... ....+..+.+. +.+..+++.||.|+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~iIvviNK~D~~ 131 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcEEEEEeCCCCC
Confidence 677788999999999998 3222 22333333322 122245778999985
No 239
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.90 E-value=1.4e-08 Score=87.19 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=78.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEE---CCeEEEEEEeeCCCccc------c--chhh
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNI---DGKKVKLQIWDTAGQER------F--RTIT 87 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~---~~~~~~l~i~D~~G~~~------~--~~~~ 87 (231)
....|+|-|-||||||||++.+.+.+. ...|+ |.++.+.+ +....++++.||||.-+ . ....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YP------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYP------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCC------ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence 457899999999999999999998764 23343 33333333 22346899999999421 1 1111
Q ss_pred hhccc-CCcEEEEEEecC-----cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 88 QSYYR-SANGVIIEVTSV-----EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 88 ~~~~~-~ad~vIlV~dit-----Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
-..++ -+++++++||.+ +.+.-...+++++.... .+..+|.||.|+.....
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~ 297 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEK 297 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhH
Confidence 11122 357899999999 78887888889988887 66779999999885433
No 240
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.89 E-value=1.1e-08 Score=97.88 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=76.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCC-C---CCc--------------ccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF-V---EKT--------------GNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f-~---~~~--------------~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
.++..+|+++|..++|||||+++++...- . ... ...+.++.....+..+ ...+.+|||+|
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCC
Confidence 34567999999999999999999974210 0 000 0111122333344444 47889999999
Q ss_pred ccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 80 QERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 80 ~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+.++......+++.+|++|+|+|.+ ..+...-| ..+.+ ...+.+++.||.|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 9988888889999999999999998 33333333 23322 2344567899999875
No 241
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.86 E-value=9.6e-09 Score=92.59 Aligned_cols=118 Identities=11% Similarity=0.094 Sum_probs=74.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCC---CCc--ccceeeEEEEEE------------EEE----CC------eEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV---EKT--GNTIGVDFSMKT------------VNI----DG------KKVK 71 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~---~~~--~pt~~~~~~~~~------------~~~----~~------~~~~ 71 (231)
...++|+++|..++|||||+.++.+.... ++. .-|+...+..-. ++. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45789999999999999999999743211 111 012221111000 001 11 1367
Q ss_pred EEEeeCCCccccchhhhhcccCCcEEEEEEecC-c--HhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 72 LQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-E--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 72 l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-S--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+.+||++|+++|..........+|++++|+|.+ . .....+.+..+ +... .+..+++.||.|+...
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-i~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-IKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-CCeEEEEEEccccCCH
Confidence 899999999999877777788899999999998 2 23333333333 2222 2345678899998753
No 242
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.86 E-value=1.8e-08 Score=81.80 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCc---ccceeeEEEEEEEEECCeEEEEEEeeCCCccccc--------hh---
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF-VEKT---GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--------TI--- 86 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~---~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~--- 86 (231)
++|+++|.+|||||||+|.+++.+. .... ..|.. .......+++ ..+.++||||-.+.. .+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~--~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKT--CQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccc--cceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHH
Confidence 4799999999999999999998653 2221 12222 2223334455 568999999954321 11
Q ss_pred hhhcccCCcEEEEEEecCcHh-hHHHHHHHHHHhcCCcc--eeeecccccC
Q psy5781 87 TQSYYRSANGVIIEVTSVEYC-YQRNWHKQAVTLFDKYK--FGHAFSTSLA 134 (231)
Q Consensus 87 ~~~~~~~ad~vIlV~ditSf~-~l~~w~~~i~~~~~~~~--~~~vv~~k~d 134 (231)
........|++++|.|+..+. .-...++.+.+.+++.. ..+++.++.|
T Consensus 77 ~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred HHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 122346789999999998322 22344555555555432 2334444443
No 243
>KOG1191|consensus
Probab=98.86 E-value=6.9e-09 Score=93.07 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=83.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceee--EEEEEEEEECCeEEEEEEeeCCCccc-cch--------hh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV--DFSMKTVNIDGKKVKLQIWDTAGQER-FRT--------IT 87 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~--~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~--------~~ 87 (231)
+.-++|+++|.||||||||+|.+..++- .-..|-.|. |.-...++++| +++.|.||+|..+ -.. ..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr-sIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR-SIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc-eEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 4458999999999999999999997753 223333343 33334555666 7888999999654 111 13
Q ss_pred hhcccCCcEEEEEEecC-----cHhhHHHHHHHHHHhcC------CcceeeecccccCCCCCcccccc
Q psy5781 88 QSYYRSANGVIIEVTSV-----EYCYQRNWHKQAVTLFD------KYKFGHAFSTSLAMPQVRPCLFH 144 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit-----Sf~~l~~w~~~i~~~~~------~~~~~~vv~~k~dl~~~~~~~~~ 144 (231)
...++.+|++++|+|.. +...+.+.+++...-+. .....+++.||.|+..+.+|...
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~ 410 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK 410 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC
Confidence 45677899999999994 44455556655543332 23556788999999887665443
No 244
>PRK12736 elongation factor Tu; Reviewed
Probab=98.85 E-value=2.2e-08 Score=89.94 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=74.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCC-------CC-----C--CcccceeeEEEEEEEEECCeEEEEEEeeCCCcccc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD-------FV-----E--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~-------f~-----~--~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 83 (231)
....++|+++|..++|||||+.++++.. +. + .....-|.........+......+.++||+|+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4557999999999999999999998521 00 0 00011222233333344334467789999999987
Q ss_pred chhhhhcccCCcEEEEEEecC-c-HhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 84 RTITQSYYRSANGVIIEVTSV-E-YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 84 ~~~~~~~~~~ad~vIlV~dit-S-f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
......-+..+|++++|+|.+ . ...-.+.+..+... +.+..+++.||.|+..
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCEEEEEEEecCCcc
Confidence 665555567889999999998 1 22222333333222 2333557899999863
No 245
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.82 E-value=5e-08 Score=82.34 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=71.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCC--CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc--h-h----
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR--T-I---- 86 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--~-~---- 86 (231)
+.....++|+|+|.+|||||||+|.+++..... .+.++.. .........++ ..+.+|||+|-.+.. . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~-~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETL-RVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceE-EEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHH
Confidence 456678999999999999999999999875422 2222221 12212223444 678999999965431 1 0
Q ss_pred ---hhhccc--CCcEEEEEEecC--cHhhH-HHHHHHHHHhcCCc--ceeeecccccCCC
Q psy5781 87 ---TQSYYR--SANGVIIEVTSV--EYCYQ-RNWHKQAVTLFDKY--KFGHAFSTSLAMP 136 (231)
Q Consensus 87 ---~~~~~~--~ad~vIlV~dit--Sf~~l-~~w~~~i~~~~~~~--~~~~vv~~k~dl~ 136 (231)
...|+. ..+++++|..++ .++.. ...++.|.+.++.. ...+++.++.|..
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 122333 568888887776 33333 35666666655543 2245666776554
No 246
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.80 E-value=2e-08 Score=90.06 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC-Cc-----ccceeeEEEEEEE---------------EECC-eEEEEEEeeCCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KT-----GNTIGVDFSMKTV---------------NIDG-KKVKLQIWDTAG 79 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~-----~pt~~~~~~~~~~---------------~~~~-~~~~l~i~D~~G 79 (231)
+||.++|.++||||||++++++..+.. +| .|++|+-+....+ ..++ ..+.+++||++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 699999999999999999999876642 34 3555542221100 0122 346799999999
Q ss_pred c----cccchhhhhc---ccCCcEEEEEEecC
Q psy5781 80 Q----ERFRTITQSY---YRSANGVIIEVTSV 104 (231)
Q Consensus 80 ~----~~~~~~~~~~---~~~ad~vIlV~dit 104 (231)
. .+...+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3444555556 88999999999995
No 247
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.79 E-value=2.4e-08 Score=90.18 Aligned_cols=120 Identities=14% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCc------ccceeeEEEEEEE----------------EEC--C----
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT------GNTIGVDFSMKTV----------------NID--G---- 67 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~------~pt~~~~~~~~~~----------------~~~--~---- 67 (231)
+.+...++|+++|..++|||||+.++.+. +.... -.|+...+....+ .++ +
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 34566799999999999999999888642 21111 1233222111000 011 1
Q ss_pred eEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC-c--HhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-E--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 68 ~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-S--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
....+.|||++|+++|..........+|++++|+|.+ - ......-+..+.. . ..+..++++||.|+...
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~-~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-I-GIKNIVIVQNKIDLVSK 154 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-c-CCCcEEEEEEeeccccc
Confidence 1367899999999887654444455679999999998 2 1221221222221 1 22335678899998653
No 248
>CHL00071 tufA elongation factor Tu
Probab=98.77 E-value=7.5e-08 Score=86.92 Aligned_cols=117 Identities=13% Similarity=0.068 Sum_probs=74.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDF----------------VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f----------------~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
+....++|+++|..++|||||++++++..- .++..+ |.........+..+...+.+.||||+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~r--g~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKAR--GITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcC--CEeEEccEEEEccCCeEEEEEECCCh
Confidence 345569999999999999999999986311 111112 22222222233333456789999999
Q ss_pred cccchhhhhcccCCcEEEEEEecC-cH-hhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV-EY-CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit-Sf-~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+|.......+..+|++++|+|.+ -. ..-.+.+..+... +.+..+++.||.|+..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEccCCCC
Confidence 887666666778999999999998 22 2222333333221 2233557899999864
No 249
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.77 E-value=3.2e-08 Score=87.20 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=55.5
Q ss_pred EEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcH----------hhHHHHHHHHHHhcC----Ccceee
Q psy5781 62 TVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEY----------CYQRNWHKQAVTLFD----KYKFGH 127 (231)
Q Consensus 62 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf----------~~l~~w~~~i~~~~~----~~~~~~ 127 (231)
.+.+++ +.+.+||.+|+...+..|.+|+.+++++|+|.|++.| .++.+-+..+...+. ...+.+
T Consensus 178 ~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pii 255 (342)
T smart00275 178 AFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSII 255 (342)
T ss_pred EEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEE
Confidence 344443 6789999999999999999999999999999999944 245555555555444 345577
Q ss_pred ecccccCCCC
Q psy5781 128 AFSTSLAMPQ 137 (231)
Q Consensus 128 vv~~k~dl~~ 137 (231)
++.||.|+..
T Consensus 256 l~~NK~D~~~ 265 (342)
T smart00275 256 LFLNKIDLFE 265 (342)
T ss_pred EEEecHHhHH
Confidence 8889988765
No 250
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.77 E-value=7.6e-08 Score=80.01 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcc----------------c-------ceeeEEEE---------------EEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTG----------------N-------TIGVDFSM---------------KTVN 64 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~----------------p-------t~~~~~~~---------------~~~~ 64 (231)
||+++|+.++|||||+.+|..+.|..... . ..|.+..- ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999876643111 0 11111000 1111
Q ss_pred ECCeEEEEEEeeCCCccccchhhhhcc--cCCcEEEEEEecC-cHh-hHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 65 IDGKKVKLQIWDTAGQERFRTITQSYY--RSANGVIIEVTSV-EYC-YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 65 ~~~~~~~l~i~D~~G~~~~~~~~~~~~--~~ad~vIlV~dit-Sf~-~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
. ....+.+.|++|+++|.......+ ..+|++++|.|.+ ... .-..++..+... ..+.+++.||.|+..
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~---~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL---NIPVFVVVTKIDLAP 152 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 1 235789999999998865433334 3689999999987 222 222333333322 233568899999753
No 251
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.76 E-value=2.3e-08 Score=91.13 Aligned_cols=119 Identities=12% Similarity=0.056 Sum_probs=77.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCC--C------------------------CCccc---ceeeEEEEEEEEECCe
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF--V------------------------EKTGN---TIGVDFSMKTVNIDGK 68 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f--~------------------------~~~~p---t~~~~~~~~~~~~~~~ 68 (231)
....++|+++|..++|||||+-+++...- . -+..+ .-|+............
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 34568999999999999999988874210 0 00000 1111122222333445
Q ss_pred EEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhc----C-CcceeeecccccCCC
Q psy5781 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLF----D-KYKFGHAFSTSLAMP 136 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~----~-~~~~~~vv~~k~dl~ 136 (231)
...++|.|++|+++|.......+..+|++|+|+|.+ .|+....|....++.. . .-+..+++.||.|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 678999999999999888888899999999999999 5764433332222222 1 233456788999976
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=98.73 E-value=1.2e-07 Score=85.33 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=74.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCC------------C--CcccceeeEEEEEEEEECCeEEEEEEeeCCCcccc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV------------E--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~------------~--~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 83 (231)
....++|+++|..++|||||+.++++.... + .....-|.........+......+.+.||+|+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356799999999999999999999862100 0 00011222222223333333456789999999887
Q ss_pred chhhhhcccCCcEEEEEEecC-c-HhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 84 RTITQSYYRSANGVIIEVTSV-E-YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 84 ~~~~~~~~~~ad~vIlV~dit-S-f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.......+..+|++++|+|.+ - ...-.+++..+... +.+..+++.||.|+..
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCEEEEEEeecCCcc
Confidence 766666788999999999998 2 22223333333322 2233445789999864
No 253
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.72 E-value=7.2e-08 Score=88.55 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=71.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCC-CCC------------c--------------------ccceeeEEEEEEEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF-VEK------------T--------------------GNTIGVDFSMKTVN 64 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~------------~--------------------~pt~~~~~~~~~~~ 64 (231)
....+||+++|..++|||||+.+++...- ... . ...+-++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46679999999999999999999984321 110 0 00011122222222
Q ss_pred ECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC-cHh--hHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 65 IDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-EYC--YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 65 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-Sf~--~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.....+.|+||+|+++|......-+..+|++++|+|.+ -.. ..+.|. +..... .+..+++.||.|+..
T Consensus 104 --~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~lg-~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 --TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLLG-IKHLVVAVNKMDLVD 174 (474)
T ss_pred --cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHhC-CCceEEEEEeecccc
Confidence 33457889999999888654445578999999999998 221 111221 222222 234567899999863
No 254
>KOG0090|consensus
Probab=98.72 E-value=3.8e-08 Score=79.77 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc---CCcEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR---SANGVI 98 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~---~ad~vI 98 (231)
=.|+++|..++|||+|..++..+.+...+.+... ....+.++.. .+++.|.||+.+.+.-...|+. .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 3689999999999999999999976554432222 1123333332 2799999999987776555665 789999
Q ss_pred EEEecC----cHhhHHHHHHHHHHhc---CCcceeeecccccCCCCCcc
Q psy5781 99 IEVTSV----EYCYQRNWHKQAVTLF---DKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 99 lV~dit----Sf~~l~~w~~~i~~~~---~~~~~~~vv~~k~dl~~~~~ 140 (231)
||.|.. ....+.+++-++.-.. .+....++..||.|+--..+
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 999999 3344445555554443 45555677788888876655
No 255
>PRK12739 elongation factor G; Reviewed
Probab=98.72 E-value=7.2e-08 Score=92.43 Aligned_cols=114 Identities=17% Similarity=0.118 Sum_probs=75.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCC--CC-----C-----------CcccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD--FV-----E-----------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~--f~-----~-----------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
++..+|+++|..++|||||+++++... .. . +....+.++.....+..++ ..+.++||+|+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 457899999999999999999997421 00 0 0111122223333444444 67899999999
Q ss_pred cccchhhhhcccCCcEEEEEEecC-cHhhH-HHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV-EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit-Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.++.......++.+|++|+|+|.+ -.+.- ...+..+.+ .....+++.||.|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 988888888999999999999998 22211 122222222 2334568899999875
No 256
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.70 E-value=5.6e-08 Score=87.62 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCC--------------------------------cccceeeEEEEEEEEECCe
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF-VEK--------------------------------TGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f-~~~--------------------------------~~pt~~~~~~~~~~~~~~~ 68 (231)
+||+++|..++|||||+.+++...- ... ....+-++.....+.. .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence 5899999999999999999974321 000 0000011222222333 3
Q ss_pred EEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC-c--HhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-E--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-S--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
...+.|+||+|+++|.......+..+|++++|+|.+ - -+..+.|. +.+... .+..+++.||.|+..
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~-~~~iivviNK~D~~~ 147 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLG-IRHVVLAVNKMDLVD 147 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcC-CCcEEEEEEeccccc
Confidence 457889999999988765556788999999999998 2 11112222 122222 234567899999864
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.68 E-value=7.6e-08 Score=91.41 Aligned_cols=117 Identities=18% Similarity=0.167 Sum_probs=71.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCC-CC-C----------cccc---------------------eeeEEEEEEE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDF-VE-K----------TGNT---------------------IGVDFSMKTV 63 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f-~~-~----------~~pt---------------------~~~~~~~~~~ 63 (231)
.....++|+++|..++|||||+++++...- .. . ...+ +.++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344568999999999999999999985321 11 0 0000 0011111222
Q ss_pred EECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 64 NIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 64 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..+ ...+.|+||+|+++|.......+..+|++++|+|.+ ....-.+....+... ..+..+++.||.|+..
T Consensus 100 ~~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~--~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 100 ATP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL--GIRHVVLAVNKMDLVD 171 (632)
T ss_pred ccC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh--CCCeEEEEEEeccccc
Confidence 223 356789999999987655555678999999999998 111111112122221 2244567899999864
No 258
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.67 E-value=4e-08 Score=82.62 Aligned_cols=106 Identities=19% Similarity=0.306 Sum_probs=69.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCc--ccceeeEEEEEEEEECCeEEEEEEeeCCCccc-------cchhhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT--GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-------FRTITQ 88 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~--~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~ 88 (231)
....++|+++|..|+|||||||.+..+...+.. ..+.....+ ....+++ -.+.|||++|-++ ++....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhhccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 456789999999999999999999975543321 111111111 1123333 5689999998554 666778
Q ss_pred hcccCCcEEEEEEecC-cHhhH-HHHHHHHHHhcCCccee
Q psy5781 89 SYYRSANGVIIEVTSV-EYCYQ-RNWHKQAVTLFDKYKFG 126 (231)
Q Consensus 89 ~~~~~ad~vIlV~dit-Sf~~l-~~w~~~i~~~~~~~~~~ 126 (231)
.++.+.|.++++.+.. .+..+ .+.++++.-..-+++.+
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i 152 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVL 152 (296)
T ss_pred HHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeE
Confidence 8889999888888888 33333 35556665555544444
No 259
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.66 E-value=1.1e-07 Score=78.25 Aligned_cols=98 Identities=15% Similarity=0.249 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc----ccceeeEEEEEEEEECCeEEEEEEeeCCCcccc--------chh---
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKT----GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF--------RTI--- 86 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~----~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~--- 86 (231)
++|+|+|..|+||||++|.+++...-... .-|.. .......++| ..+.++||||--+. ..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~--~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~ 76 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQE--CQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRC 76 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS---EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccc--cceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHH
Confidence 58999999999999999999986643222 12222 3333446777 56789999993221 111
Q ss_pred hhhcccCCcEEEEEEecCcHhhH-HHHHHHHHHhcCCc
Q psy5781 87 TQSYYRSANGVIIEVTSVEYCYQ-RNWHKQAVTLFDKY 123 (231)
Q Consensus 87 ~~~~~~~ad~vIlV~ditSf~~l-~~w~~~i~~~~~~~ 123 (231)
........++++||...+.|..- ...++.+.+.+++.
T Consensus 77 l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~ 114 (212)
T PF04548_consen 77 LSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE 114 (212)
T ss_dssp HHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG
T ss_pred HHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH
Confidence 11234568999999999833322 34555666666654
No 260
>PLN03127 Elongation factor Tu; Provisional
Probab=98.62 E-value=3.7e-07 Score=83.22 Aligned_cols=115 Identities=15% Similarity=0.069 Sum_probs=70.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC------C----------CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG------D----------FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~------~----------f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 82 (231)
...++|+++|..++|||||+.++.+. . ..++..+.+-.+. ....+......+.+.||+|+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence 45689999999999999999999621 1 0111112222222 2333433445788999999988
Q ss_pred cchhhhhcccCCcEEEEEEecC-cH-hhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 83 FRTITQSYYRSANGVIIEVTSV-EY-CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~dit-Sf-~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|......-...+|++++|.|.+ .. ..-.+.+..+... +.+..+++.||.|+..
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~iIvviNKiDlv~ 191 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVVFLNKVDVVD 191 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEeeccCC
Confidence 7665455566799999999998 21 1112222222211 2233457789999864
No 261
>KOG0705|consensus
Probab=98.62 E-value=3.4e-08 Score=89.56 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=87.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+|+-|||+.+.|||+|++||+.+.|..+..|.-| .+.+.+.++++...+-+.|.+|.. ...|..+.|++|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence 358999999999999999999999999887777666 556778889999999999999843 3567789999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcCCcce-eeecccccCCCCC
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFDKYKF-GHAFSTSLAMPQV 138 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~~~~~-~~vv~~k~dl~~~ 138 (231)
||.+. +|+.++...-.+..+.....+ ..+++++..+..+
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~ 144 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAK 144 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcc
Confidence 99998 999998888777655554333 3344554444433
No 262
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.62 E-value=4.1e-07 Score=84.91 Aligned_cols=148 Identities=11% Similarity=0.047 Sum_probs=97.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc------cchhhhhccc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER------FRTITQSYYR 92 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~------~~~~~~~~~~ 92 (231)
+..+|+++|.||||||||.|++++.+. ..++. -+-++...-.+..++ .+++|.|.||.-. -+...+.|+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp-GvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWP-GVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCC-CeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 346799999999999999999997543 34442 222233334444444 4589999999532 2233444443
Q ss_pred --CCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhh
Q psy5781 93 --SANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 93 --~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
+.|++|-|.|.+..++--..--++.+ -..+.++..|..|.-+.+-...+....++..|.++-.+.. ..++++.
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLyltlQLlE---~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l 155 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLTLQLLE---LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEEL 155 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHHHHHHH---cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHH
Confidence 56999999999955543333333333 2333667888888877666666666688889999888877 4556666
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
.....
T Consensus 156 ~~~i~ 160 (653)
T COG0370 156 KRAII 160 (653)
T ss_pred HHHHH
Confidence 65544
No 263
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.60 E-value=1.8e-07 Score=83.62 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=73.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc----------cchh-
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----------FRTI- 86 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~- 86 (231)
..+||+++|.|+||||||+|++++.+- ......|. .|.-...++.++ .++.+.||+|..+ |...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTT-RD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTT-RDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCcc-ccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehh
Confidence 679999999999999999999997652 22222222 244445566666 4567999999543 2221
Q ss_pred hhhcccCCcEEEEEEecC-cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 87 TQSYYRSANGVIIEVTSV-EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 87 ~~~~~~~ad~vIlV~dit-Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
....+..+|+++||.|.+ -+..- ......+ ....+...++.||.|+....
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~~ia~~i---~~~g~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDLRIAGLI---EEAGRGIVIVVNKWDLVEED 305 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHHHHHHHH---HHcCCCeEEEEEccccCCch
Confidence 234577899999999999 22221 1222222 23445566888999976653
No 264
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.60 E-value=1e-07 Score=73.32 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=41.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
+++++|.+|||||||+|+++.+.... .....+.+.....+.+++ .+.||||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887643 333444445555566654 4799999995
No 265
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.58 E-value=4.1e-07 Score=78.16 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=66.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc----cc---hhhhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----FR---TITQS 89 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~---~~~~~ 89 (231)
+..--+++++|.|+||||||++.+++-.. ..+|.-|.- +...-.++++| ..++|.|+||.-+ -+ ...-.
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl-~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTL-EPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceec-ccccceEeecC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 44567899999999999999999997654 234443321 22233455555 7899999997321 11 23456
Q ss_pred cccCCcEEEEEEecC-cHhhHHHHHHHHHH
Q psy5781 90 YYRSANGVIIEVTSV-EYCYQRNWHKQAVT 118 (231)
Q Consensus 90 ~~~~ad~vIlV~dit-Sf~~l~~w~~~i~~ 118 (231)
..++||.+++|.|+. ....++...+++..
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~ 166 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELED 166 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHh
Confidence 788999999999999 44445556666654
No 266
>PRK12740 elongation factor G; Reviewed
Probab=98.55 E-value=2.9e-07 Score=88.03 Aligned_cols=106 Identities=21% Similarity=0.251 Sum_probs=69.8
Q ss_pred EcCCCCcHHHHHHHHHcCCCC--C-----------C-----cccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhh
Q psy5781 27 IGDCGVGKTCVVHRFRSGDFV--E-----------K-----TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQ 88 (231)
Q Consensus 27 lG~~~vGKTSLl~~~~~~~f~--~-----------~-----~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 88 (231)
+|..++|||||+++++...-. . + ....+.+......+..++ +.+.+|||+|+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 689999999999999643110 0 0 011111123333444444 7899999999998877788
Q ss_pred hcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 89 SYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 89 ~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.+++.+|++++|+|.+ .......|. .+.. ...+.+++.||.|....
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---cCCCEEEEEECCCCCCC
Confidence 8899999999999998 433333333 2222 23455678999997653
No 267
>KOG3886|consensus
Probab=98.55 E-value=8.6e-08 Score=78.69 Aligned_cols=114 Identities=22% Similarity=0.331 Sum_probs=73.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCC--CC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc-----hhhhhccc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGD--FV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-----TITQSYYR 92 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~--f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-----~~~~~~~~ 92 (231)
.-||+++|.+|+||||+=..+..+. +. ...-+|+.++. ..+..-| ...|.+||++||+.+. ...+..++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveH--sh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEH--SHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeee--hhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 3589999999999999865554322 11 12234554333 3333333 3779999999998532 24567899
Q ss_pred CCcEEEEEEecC------cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 93 SANGVIIEVTSV------EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 93 ~ad~vIlV~dit------Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+.+++++|||+. .++.-+..++.+.++.+..++- .+..|.|+.+.
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF-~l~hKmDLv~~ 131 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIF-CLLHKMDLVQE 131 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEE-EEEeechhccc
Confidence 999999999999 3334445555566655555543 44556666553
No 268
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.54 E-value=6.4e-07 Score=83.89 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=71.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCC-CCCCc--ccceeeEEEEEEEEECCeEEEEEEeeCCCccccc-------hh-
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD-FVEKT--GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-------TI- 86 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~-f~~~~--~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~- 86 (231)
.+..++|+|+|.+||||||++|.+++.. |.... ..|.. ........++ ..+.++||+|-.... .+
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence 4567899999999999999999999865 33221 12222 1111223454 568999999965321 11
Q ss_pred --hhhccc--CCcEEEEEEecC--cHh-hHHHHHHHHHHhcCCcce--eeecccccC
Q psy5781 87 --TQSYYR--SANGVIIEVTSV--EYC-YQRNWHKQAVTLFDKYKF--GHAFSTSLA 134 (231)
Q Consensus 87 --~~~~~~--~ad~vIlV~dit--Sf~-~l~~w~~~i~~~~~~~~~--~~vv~~k~d 134 (231)
...++. ..|++|+|.+++ ..+ .-..+++.|.+.++.... .+++.+.-|
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD 247 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAA 247 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence 122333 479999999887 222 233788888888886644 334444433
No 269
>PRK00007 elongation factor G; Reviewed
Probab=98.53 E-value=4.2e-07 Score=87.21 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=74.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc--CCCCC-----------C-----cccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS--GDFVE-----------K-----TGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~--~~f~~-----------~-----~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
.++..+|+++|..++|||||+++++. +.... + ....+.++.....+..++ ..+.+.||+|
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 44578999999999999999999973 21100 0 111122223333444444 6789999999
Q ss_pred ccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 80 QERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 80 ~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..+|.......++.+|++|+|.|.+ ..+...-|.. +.+ .....+++.||.|+..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~-~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQ-ADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCCCC
Confidence 9887766677788999999999988 3333233332 222 2234468899999874
No 270
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.53 E-value=6.8e-07 Score=81.53 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=73.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC--CCC------------------------CCcc---cceeeEEEEEEEEECCe
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--DFV------------------------EKTG---NTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~------------------------~~~~---pt~~~~~~~~~~~~~~~ 68 (231)
....++|+++|..++|||||+.+++.. ... -+.. ..-|.............
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 455689999999999999999999751 100 0000 00111222222333444
Q ss_pred EEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHh----hHHHHHHHHHHhcC-CcceeeecccccCCC
Q psy5781 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYC----YQRNWHKQAVTLFD-KYKFGHAFSTSLAMP 136 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~----~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~ 136 (231)
...+.|.|+||+++|.......+..+|++|||.|.+ -|+ .-..-.+++.-... .-+..+++.||.|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDK 158 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 578999999999998877777788999999999998 332 00111222222222 223355789999943
No 271
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.47 E-value=4.8e-07 Score=70.57 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=41.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
...+++++|.++||||||++++.++. ...+.++.+.+.....+..++ .+.+|||+|
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999655 444667777544333333332 589999998
No 272
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.47 E-value=6.5e-07 Score=87.59 Aligned_cols=118 Identities=12% Similarity=0.140 Sum_probs=76.9
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCC-----------CCccc-----ceeeEEEEEEEEE-------------
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-----------EKTGN-----TIGVDFSMKTVNI------------- 65 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-----------~~~~p-----t~~~~~~~~~~~~------------- 65 (231)
....+...+|+++|..++|||||+.+++...-. .++.+ .+.++.....+..
T Consensus 13 ~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 13 MDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred hhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 345667789999999999999999999853210 01111 0000111111111
Q ss_pred -CCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 66 -DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 66 -~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
++..+.++|.||+|+.+|.......++.+|++|+|.|.+ ......-|... .......+++.||.|..
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~----~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHH----HHCCCCEEEEEECCccc
Confidence 223678999999999999888888889999999999998 22222233322 23344556888999887
No 273
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.46 E-value=4.9e-07 Score=71.80 Aligned_cols=58 Identities=26% Similarity=0.423 Sum_probs=42.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
...++++++|.+|||||||++++....+. ...+..+.+.....+.++ ..+.++||+|-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 45589999999999999999999987764 234444444444445554 34789999984
No 274
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.44 E-value=5.1e-07 Score=69.53 Aligned_cols=96 Identities=20% Similarity=0.298 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc----ccchhhhhcccCCcEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSYYRSANGVI 98 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~~~ad~vI 98 (231)
||+++|..|+|||||++++.+... .|..|..+.|+ =.+.||||.- .+....-....+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 899999999999999999998654 34444433333 1347899842 23333344555999999
Q ss_pred EEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 99 IEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 99 lV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+|.|.+ .+..... .+.+.+. ++.+-+.+|.|+..
T Consensus 69 ll~dat~~~~~~pP---~fa~~f~--~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 69 LLQDATEPRSVFPP---GFASMFN--KPVIGVITKIDLPS 103 (143)
T ss_pred EEecCCCCCccCCc---hhhcccC--CCEEEEEECccCcc
Confidence 999999 2222211 1222222 23446778888883
No 275
>PTZ00416 elongation factor 2; Provisional
Probab=98.43 E-value=9e-07 Score=86.49 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=74.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCC-C-C---------Cccc-----ceeeEEEEEEEEEC--------CeEEEEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF-V-E---------KTGN-----TIGVDFSMKTVNID--------GKKVKLQ 73 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f-~-~---------~~~p-----t~~~~~~~~~~~~~--------~~~~~l~ 73 (231)
.+...+|+++|..++|||||+.+++...- . . ++.+ .+.++.....+..+ ++...+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45566999999999999999999985211 0 0 0000 00001111112222 2357899
Q ss_pred EeeCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 74 IWDTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 74 i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
+.||+|+.+|.......++.+|++|+|.|.+ ......-| +.+. ....+.+++.||.|..
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~---~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQAL---QERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHH---HcCCCEEEEEEChhhh
Confidence 9999999998887788899999999999998 22222223 2222 2334567889999887
No 276
>PTZ00258 GTP-binding protein; Provisional
Probab=98.41 E-value=7.6e-07 Score=79.50 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=54.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCe---------------EEEEEEeeCCCcc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQE 81 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~ 81 (231)
....+||.+||.++||||||++.+.+.... .+|..|. .+.....+.+.+. ...+.+.|++|-.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftT-i~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCT-IDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCc-ccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 456789999999999999999999875532 2332221 1222223333322 2348999999943
Q ss_pred c----cchh---hhhcccCCcEEEEEEec
Q psy5781 82 R----FRTI---TQSYYRSANGVIIEVTS 103 (231)
Q Consensus 82 ~----~~~~---~~~~~~~ad~vIlV~di 103 (231)
. -..+ .-..++++|++++|.|.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 2 1112 22346789999999997
No 277
>KOG1489|consensus
Probab=98.38 E-value=1.8e-06 Score=74.10 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=74.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCcc-----cceeeEEEEEEEEECCeEEEEEEeeCCCcc----ccchhhhh---
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF-VEKTG-----NTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQS--- 89 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~-----pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~--- 89 (231)
.|-+||-|++|||||++.+...+- ...|. |++| ++.+++- ..+.+-|.||.- ..+.+--.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG------~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLr 270 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG------TVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLR 270 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc------eeecccc-ceeEeccCccccccccccCcccHHHHH
Confidence 567999999999999999987543 22333 4444 3444432 338999999843 22233222
Q ss_pred cccCCcEEEEEEecCc------HhhHHHHHHHHHHhcC--CcceeeecccccCCCCCc
Q psy5781 90 YYRSANGVIIEVTSVE------YCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 90 ~~~~ad~vIlV~ditS------f~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~ 139 (231)
.+..++.+++|.|++. ++.++....|+..+-. .+++.+++.||+|++...
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae 328 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE 328 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH
Confidence 3568999999999993 4566666666655443 456678999999997433
No 278
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.38 E-value=3.4e-06 Score=66.22 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=28.1
Q ss_pred EEEEeeCCCcc----ccchhhhhcccCCcEEEEEEecC
Q psy5781 71 KLQIWDTAGQE----RFRTITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 71 ~l~i~D~~G~~----~~~~~~~~~~~~ad~vIlV~dit 104 (231)
.+.|+|+||-. ....+...|+..+|++|+|.+.+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~ 139 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDAN 139 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETT
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccC
Confidence 57899999964 23356788889999999999999
No 279
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.38 E-value=7.3e-07 Score=76.16 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=50.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCe---------------EEEEEEeeCCCccc----c
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQER----F 83 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~----~ 83 (231)
|.++|.++||||||++++++.... ..|.. ...+.....+.+.+. ...++++|++|-.+ .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pf-tTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPF-CTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccc-cchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 578999999999999999987642 22322 112233334444332 23589999999432 1
Q ss_pred chhh---hhcccCCcEEEEEEec
Q psy5781 84 RTIT---QSYYRSANGVIIEVTS 103 (231)
Q Consensus 84 ~~~~---~~~~~~ad~vIlV~di 103 (231)
..+. -..++++|++++|+|.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeC
Confidence 1222 2335689999999986
No 280
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.36 E-value=1.7e-06 Score=74.24 Aligned_cols=61 Identities=26% Similarity=0.565 Sum_probs=42.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCc----------ccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT----------GNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~----------~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
...++|+|+|.+|+||||||+.+++....... ..+..+......+.-++..+.|.|+||+|
T Consensus 2 g~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 2 GFNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 35799999999999999999999986554321 12333333334445578899999999998
No 281
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.32 E-value=2.1e-06 Score=75.92 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCe---------------EEEEEEeeCCCccc---
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQER--- 82 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~--- 82 (231)
++|.+||.++||||||++++++.... .+|..|. .+.....+.+.+. ...+.+.|++|-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftT-i~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCT-IEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccccccc-ccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 78999999999999999999986632 2332221 1122223333321 13589999999432
Q ss_pred -cchh---hhhcccCCcEEEEEEecC
Q psy5781 83 -FRTI---TQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 83 -~~~~---~~~~~~~ad~vIlV~dit 104 (231)
...+ .-..++++|++++|+|..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122 223467899999999983
No 282
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.32 E-value=1.5e-06 Score=84.01 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=75.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCC-CC----------Ccc-------cceeeEEEEEEEEECCeEEEEEEeeCC
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDF-VE----------KTG-------NTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f-~~----------~~~-------pt~~~~~~~~~~~~~~~~~~l~i~D~~ 78 (231)
..++.-+|+++|..++|||||+.+++...- .. ++. -|+........+..+++.+.+.+.|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 345667899999999999999999985321 00 111 111100111112334556889999999
Q ss_pred CccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 79 GQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 79 G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
|+.+|.......++.+|++|+|+|.. ..+....|.... +. .. ..+++.||.|..
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~-~~--~~-~~iv~iNK~D~~ 152 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL-RE--RV-KPVLFINKVDRL 152 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH-Hc--CC-CeEEEEECchhh
Confidence 99998888888899999999999998 222223343322 21 22 346789999865
No 283
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.30 E-value=2.2e-06 Score=68.33 Aligned_cols=57 Identities=28% Similarity=0.464 Sum_probs=41.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
...++|+++|.+|||||||+|++.+..... ..+..|.+.....+.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 345899999999999999999999865422 344455444444445443 478999998
No 284
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.30 E-value=4.4e-06 Score=76.43 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=74.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC--CeEEEEEEeeCCCccccchhhhhcccC----C
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID--GKKVKLQIWDTAGQERFRTITQSYYRS----A 94 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~----a 94 (231)
.-.|+|+|+.++||||||.+|.+. +++.++.+.+|....+.-+ ....++.+|-..|...+..+.+..+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 457999999999999999998654 3466788877765554332 234678999998877676666555542 2
Q ss_pred cEEEEEEecC----cHhhHHHHHHHHHHhcCC
Q psy5781 95 NGVIIEVTSV----EYCYQRNWHKQAVTLFDK 122 (231)
Q Consensus 95 d~vIlV~dit----Sf~~l~~w~~~i~~~~~~ 122 (231)
-.+|||.|.+ -.+.+..|+..+++....
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~ 133 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEK 133 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999 777889999988876643
No 285
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.29 E-value=2.4e-06 Score=66.74 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=37.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
..++|+++|.+|||||||+|++.+..... ..++.|.......+..++ .+.|.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999765422 233444333322333322 267999998
No 286
>KOG0082|consensus
Probab=98.29 E-value=2.8e-06 Score=74.51 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=53.8
Q ss_pred EEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcHh----------hHHHHHHHHHHhcCCc----ceee
Q psy5781 62 TVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEYC----------YQRNWHKQAVTLFDKY----KFGH 127 (231)
Q Consensus 62 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~----------~l~~w~~~i~~~~~~~----~~~~ 127 (231)
.+.+.+ ..+.++|++||..-+.-|-+++.+++++|+|.+++.++ ++.+-++....++... ...+
T Consensus 189 ~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsii 266 (354)
T KOG0082|consen 189 EFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSII 266 (354)
T ss_pred EEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEE
Confidence 444444 78899999999988889999999999999999999333 2334444445555443 3466
Q ss_pred ecccccCCCC
Q psy5781 128 AFSTSLAMPQ 137 (231)
Q Consensus 128 vv~~k~dl~~ 137 (231)
+..||.|+-.
T Consensus 267 LFLNK~DLFe 276 (354)
T KOG0082|consen 267 LFLNKKDLFE 276 (354)
T ss_pred EEeecHHHHH
Confidence 7889988754
No 287
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.23 E-value=9.8e-06 Score=67.35 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=64.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
.....|+++|.+|+|||+|++.++...-........| .+ .+. ......+.++|++|.- ..+. ...+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i~-~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TVV-TGKKRRLTFIECPNDI--NAMI-DIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EEE-ecCCceEEEEeCCchH--HHHH-HHHHhcCEEE
Confidence 3457899999999999999999986421111111122 11 111 1234667899999854 2222 3357899999
Q ss_pred EEEecC-cHhh-HHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 99 IEVTSV-EYCY-QRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 99 lV~dit-Sf~~-l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+|+|.+ .+.. ...++..+... +.+..+++.||.|+..
T Consensus 109 lviDa~~~~~~~~~~i~~~l~~~--g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 109 LLIDASFGFEMETFEFLNILQVH--GFPRVMGVLTHLDLFK 147 (225)
T ss_pred EEEecCcCCCHHHHHHHHHHHHc--CCCeEEEEEeccccCC
Confidence 999998 2222 12233333221 2233445889999754
No 288
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.20 E-value=5.5e-06 Score=71.34 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=43.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 81 (231)
...++|+++|.+|||||||+|++.+..... ..+..|.+.....+.+++ .+.++||||--
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 356899999999999999999999876432 344455445444555543 37899999963
No 289
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.20 E-value=4.4e-06 Score=71.53 Aligned_cols=58 Identities=22% Similarity=0.424 Sum_probs=42.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
...++|+++|.+|||||||+|++.+..... ..+..|.+.....+.++. .+.|+||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 346899999999999999999999776433 233445444444555543 4789999997
No 290
>KOG0462|consensus
Probab=98.20 E-value=1.4e-05 Score=73.04 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=83.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCC-CCC----------------CcccceeeEEEEEEEEECCeEEEEEEeeCCCcc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGD-FVE----------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~-f~~----------------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 81 (231)
++.-++.+|-.-.=|||||.-|++.-. +.. +--.|+.-. ....+..+|+.+.|++.||||+.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQ-tasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQ-TASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEee-eeEEEEEcCCceEEEeecCCCcc
Confidence 456678889999999999999997311 111 111222211 11222335788999999999999
Q ss_pred ccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 82 RFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 82 ~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
+|.......+.-|+|++||.|.+ --+.+..++..+ ...-.++.+.||+|++..++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adp 194 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADP 194 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCH
Confidence 99998889999999999999999 444444444444 34445678899999998776
No 291
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=1.1e-05 Score=72.69 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=81.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC--CCCC---------------CcccceeeEEEEEEEEE-CCeEEEEEEeeCCCc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE---------------KTGNTIGVDFSMKTVNI-DGKKVKLQIWDTAGQ 80 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~---------------~~~pt~~~~~~~~~~~~-~~~~~~l~i~D~~G~ 80 (231)
.+.-++.++-.=.=|||||.-|++.. ...+ +.-.|+....-.-.+.. +|+.+.+++.||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34445677777788999999999742 1111 11133332222122222 678999999999999
Q ss_pred cccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
-+|.-.....+..|.|.+||.|.+ --+.+.+.+..+ +.+-.++.+.||+|++...+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl----e~~LeIiPViNKIDLP~Adp 145 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENNLEIIPVLNKIDLPAADP 145 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH----HcCcEEEEeeecccCCCCCH
Confidence 998877788888999999999999 444444444444 44556778899999998766
No 292
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.12 E-value=5.1e-06 Score=66.94 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC-------CcccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~-------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
.+++++|.+|||||||+|.+....... ...+..|.+.....+.++. .+.|+||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 589999999999999999999754311 1223334344444455543 479999998
No 293
>COG2262 HflX GTPases [General function prediction only]
Probab=98.10 E-value=2.4e-05 Score=69.41 Aligned_cols=120 Identities=12% Similarity=0.055 Sum_probs=80.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc---------ccchhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE---------RFRTIT 87 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~ 87 (231)
......|.++|=.++|||||+|++++.... .+...+. .+-..+.+.+.+ ...+.+-||.|-- .|++..
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFAT-LdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFAT-LDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeecccccccc-ccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 345678999999999999999999965433 3222222 234556677764 3567788998832 233222
Q ss_pred hhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 88 QSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
.-...+|.++.|.|.+ ..+.++.-..-+.+..-...+.+++.||+|...+..
T Consensus 267 -EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 267 -EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred -HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 2345899999999999 344444555555555556678889999999665443
No 294
>KOG1547|consensus
Probab=98.08 E-value=1.2e-05 Score=66.59 Aligned_cols=61 Identities=23% Similarity=0.477 Sum_probs=47.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCC---------CcccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE---------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~---------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
...|+|+|||.+|.|||||++.+....... .+..|.++......+.-+|.+.+|++.||+|
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 457899999999999999999987543322 3445666666666677788899999999998
No 295
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.06 E-value=6.2e-06 Score=73.11 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=51.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccc--eeeEEEEEEEEECCeEEEEEEeeCCCccccchhh-----hhcc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNT--IGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT-----QSYY 91 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt--~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----~~~~ 91 (231)
..++|+|+|++|+|||||||.+.+-.-. +..-+| ++.+.....+... ..-.+.+||.||.....-.. ..-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5689999999999999999999642211 111111 1111111122221 22248999999954322122 2235
Q ss_pred cCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCC
Q psy5781 92 RSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAM 135 (231)
Q Consensus 92 ~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl 135 (231)
..-|.+|++.+-. +-.++. ..+++.+. .+.-..|-+|+|.
T Consensus 113 ~~yD~fiii~s~rf~~ndv~-La~~i~~~---gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISSERFTENDVQ-LAKEIQRM---GKKFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEESSS--HHHHH-HHHHHHHT---T-EEEEEE--HHH
T ss_pred cccCEEEEEeCCCCchhhHH-HHHHHHHc---CCcEEEEEecccc
Confidence 5678888876655 433322 22334332 2234455666553
No 296
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=2.4e-05 Score=69.46 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=76.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC--CCCC----C-----------------------cccceeeEEEEEEEEECCe
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE----K-----------------------TGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~----~-----------------------~~pt~~~~~~~~~~~~~~~ 68 (231)
....++++++|...+|||||+=|++.+ .+.+ + ....-|...........-.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 445689999999999999999888643 2211 0 0011122223333333344
Q ss_pred EEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHhhH----HHHHHH--HHHhcCCcceeeecccccCCCC
Q psy5781 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYCYQ----RNWHKQ--AVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~~l----~~w~~~--i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+.++|.|++|+.+|-.-.-.-...||+.|||.|.. .|+.- -.-+++ |.+..+ -.-.++..||.|+..
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~ 159 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS 159 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc
Confidence 578999999999888776667788999999999999 44432 122222 333333 333557778888765
No 297
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=1.2e-05 Score=70.39 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=45.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
...+++.|+|-++||||||||++++..- ....+..|.+-....+.++.. +.|+||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 3458899999999999999999998775 334555576666666666543 899999995
No 298
>KOG0468|consensus
Probab=98.02 E-value=3.4e-05 Score=72.00 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=78.7
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccce---------------e--eEEEEEEEE---ECCeEEEEEE
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTI---------------G--VDFSMKTVN---IDGKKVKLQI 74 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~---------------~--~~~~~~~~~---~~~~~~~l~i 74 (231)
+.......+|.++|.-+.|||+|+..+.....++-+.++. | +.....++- .+++.+.++|
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 4456778899999999999999999998665433211111 1 111111221 2578899999
Q ss_pred eeCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccC
Q psy5781 75 WDTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLA 134 (231)
Q Consensus 75 ~D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~d 134 (231)
.||+|+-.|.......++.+|++++|+|+. ++. .+..+++ ...++..+.++.||+|
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikh---aiq~~~~i~vviNKiD 260 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKH---AIQNRLPIVVVINKVD 260 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHH---HHhccCcEEEEEehhH
Confidence 999999999988888999999999999998 332 2233322 2334555566667665
No 299
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.01 E-value=4.2e-05 Score=64.20 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=40.8
Q ss_pred EEEEEeeCCCccc-------------cchhhhhcccC-CcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccC
Q psy5781 70 VKLQIWDTAGQER-------------FRTITQSYYRS-ANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLA 134 (231)
Q Consensus 70 ~~l~i~D~~G~~~-------------~~~~~~~~~~~-ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~d 134 (231)
..+.+.|++|-.. ...+...|+++ .+.+++|.|.+ .+.+- ..++..+...+.....+.+.||.|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~-d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANS-DALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCch-hHHHHHHHHHHcCCcEEEEEECCC
Confidence 4788999999642 22345667884 45888899877 22211 122222222334555668899998
Q ss_pred CCC
Q psy5781 135 MPQ 137 (231)
Q Consensus 135 l~~ 137 (231)
...
T Consensus 204 ~~~ 206 (240)
T smart00053 204 LMD 206 (240)
T ss_pred CCC
Confidence 875
No 300
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.00 E-value=6.2e-05 Score=65.95 Aligned_cols=62 Identities=24% Similarity=0.510 Sum_probs=49.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC----------cccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----------~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
....+.|+++|.+|.|||||+|.+++...... ..|++.+..+...+.-+|..+.|++.||+|
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG 91 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG 91 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence 46789999999999999999999987633221 346666666666666688899999999998
No 301
>KOG3905|consensus
Probab=97.96 E-value=3.7e-05 Score=66.40 Aligned_cols=99 Identities=15% Similarity=0.272 Sum_probs=69.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC--CeEEEEEEeeCCCccccchhhhhcccCC---
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID--GKKVKLQIWDTAGQERFRTITQSYYRSA--- 94 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~a--- 94 (231)
..-.|+|+|+.|+||||||.++-+.+ .+.+--|.+|....+.-+ +...++.+|-..|..-...+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 34579999999999999999998765 344555555554433332 2356778888878765555655554432
Q ss_pred -cEEEEEEecC----cHhhHHHHHHHHHHhcC
Q psy5781 95 -NGVIIEVTSV----EYCYQRNWHKQAVTLFD 121 (231)
Q Consensus 95 -d~vIlV~dit----Sf~~l~~w~~~i~~~~~ 121 (231)
-.+||+.|++ -.+.+++|..-+++..+
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehid 159 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHID 159 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 4788999999 67888999988776654
No 302
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.93 E-value=4.4e-05 Score=66.29 Aligned_cols=116 Identities=11% Similarity=0.017 Sum_probs=74.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc----ccchhh---hhcccCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTIT---QSYYRSA 94 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~---~~~~~~a 94 (231)
.|-+||-|++||||||+.+...+- +.+|.-|.-... --.+.++ ..-.+.|-|.||.- +-..+- -..+.++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~Pn-LGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPN-LGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCc-ccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 466899999999999999986543 344543322111 0123332 23457889999842 112222 2345688
Q ss_pred cEEEEEEecC------cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCCcc
Q psy5781 95 NGVIIEVTSV------EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 95 d~vIlV~dit------Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~~ 140 (231)
.+++.|.|++ -.++.+....|+..+.+ ..++.+++.||+|+..+.+
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e 292 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE 292 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHH
Confidence 9999999999 25566677777776654 3566779999999766544
No 303
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=9.5e-05 Score=67.54 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=79.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEEEEEEC-CeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
..=|+++|.---|||||+-.+-..+.... +...+| -+ .+.++ +..-.+.+.||||++.|..++..=..-+|
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIG--A~--~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG--AY--QVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEee--eE--EEEeccCCCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 34589999999999999998876654332 222333 22 22332 12357899999999999999998889999
Q ss_pred EEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 96 GVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 96 ~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
.+|||.|++ .+. ..-.+.+........+..+..||+|-...++
T Consensus 81 IaILVVa~dDGv~--pQTiEAI~hak~a~vP~iVAiNKiDk~~~np 124 (509)
T COG0532 81 IAILVVAADDGVM--PQTIEAINHAKAAGVPIVVAINKIDKPEANP 124 (509)
T ss_pred EEEEEEEccCCcc--hhHHHHHHHHHHCCCCEEEEEecccCCCCCH
Confidence 999999999 221 1222334444445566778889999887666
No 304
>KOG2655|consensus
Probab=97.85 E-value=4.5e-05 Score=67.07 Aligned_cols=63 Identities=22% Similarity=0.460 Sum_probs=47.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC---------cccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK---------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~---------~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
+...|.++++|++|.|||||+|.++...+..+ ...|..+..+...+.-+|..+.|++.||+|-
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 45679999999999999999999876644332 2235555555555555788999999999983
No 305
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.83 E-value=6.5e-05 Score=74.59 Aligned_cols=63 Identities=14% Similarity=0.013 Sum_probs=45.9
Q ss_pred EEEeeCCCccccchhhhhcccCCcEEEEEEecC-cHhhH-HHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 72 LQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 72 l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+.||||+|++.|..+....+..+|++++|+|++ .+..- ...+..+.. ...+.++++||.|+..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH---cCCCEEEEEECCCCcc
Confidence 899999999999888888889999999999998 21111 122222322 2345778999999864
No 306
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.81 E-value=3.4e-05 Score=64.96 Aligned_cols=90 Identities=7% Similarity=-0.055 Sum_probs=61.0
Q ss_pred cccchhhhhcccCCcEEEEEEecC----cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCc
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV----EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPF 156 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit----Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~ 156 (231)
+++..+.+.+++++|++++|||++ |++.+.+|+..+.. .....++++||.|+...............+.+..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v 100 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQV 100 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeE
Confidence 567778889999999999999998 89999999987653 44567789999999654332111111222344445
Q ss_pred ccccc--ccchhhhhhhhc
Q psy5781 157 PQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 157 ~ev~~--~~nv~e~f~~~~ 173 (231)
.+++. ..|++++|...+
T Consensus 101 ~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 101 LMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred EEEecCCchhHHHHHhhhc
Confidence 55544 455666665543
No 307
>KOG1486|consensus
Probab=97.80 E-value=0.0002 Score=60.01 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=62.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc------c-chhhhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER------F-RTITQS 89 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~------~-~~~~~~ 89 (231)
+..--||+++|-|.||||||+..+..-... ..|.-|.- +...-.+.++| ..+++.|.||.-+ - ....-.
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTL-tcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQvia 135 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTL-TCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIA 135 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEE-EeecceEEecC--ceEEEecCcccccccccCCCCCceEEE
Confidence 344569999999999999999999864432 23333331 33344556666 6789999998422 1 112334
Q ss_pred cccCCcEEEEEEecC-cHhhHHHHHHHHH
Q psy5781 90 YYRSANGVIIEVTSV-EYCYQRNWHKQAV 117 (231)
Q Consensus 90 ~~~~ad~vIlV~dit-Sf~~l~~w~~~i~ 117 (231)
..+.||.+++|.|.+ +-+.-...-+++.
T Consensus 136 vArtaDlilMvLDatk~e~qr~~le~ELe 164 (364)
T KOG1486|consen 136 VARTADLILMVLDATKSEDQREILEKELE 164 (364)
T ss_pred EeecccEEEEEecCCcchhHHHHHHHHHH
Confidence 567899999999999 4444333334443
No 308
>PRK09866 hypothetical protein; Provisional
Probab=97.77 E-value=0.00039 Score=65.46 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=60.2
Q ss_pred EEEEeeCCCcccc-----chhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcccc
Q psy5781 71 KLQIWDTAGQERF-----RTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCL 142 (231)
Q Consensus 71 ~l~i~D~~G~~~~-----~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~ 142 (231)
.+.+.||||-... .......+..+|++++|.|.+ +..+ ....+.+.+. .+..+.+++.||+|......-.
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 4678899996531 222344789999999999998 2222 2333344332 2223577899999985321111
Q ss_pred ccchh--h---hhhcCCCcccccc-----ccchhhhhhhhccCCCc
Q psy5781 143 FHKFG--H---ASSSAMPFPQVWP-----CLKFGHAFSTSLAMPQV 178 (231)
Q Consensus 143 ~~~~~--~---s~~~~~~~~ev~~-----~~nv~e~f~~~~~~~~~ 178 (231)
..... . -.+...++.+++. ..|+++.......-+++
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l 354 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGKL 354 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCCC
Confidence 11111 1 1123445666655 66777777777755443
No 309
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.76 E-value=9e-05 Score=57.74 Aligned_cols=57 Identities=30% Similarity=0.401 Sum_probs=36.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
....+|+++|.+|||||||+|.+....-.. ..+..+.......+..+ ..+.+.||+|
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCC
Confidence 456889999999999999999999765211 11111111222223332 2488999998
No 310
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.73 E-value=4e-05 Score=60.36 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
=.++++|.+|||||||||.++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999999764
No 311
>PRK13768 GTPase; Provisional
Probab=97.71 E-value=3.3e-05 Score=65.37 Aligned_cols=68 Identities=13% Similarity=0.001 Sum_probs=41.7
Q ss_pred EEEEeeCCCcccc---chhhhhcccC-----CcEEEEEEecC---cHhhH--HHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 71 KLQIWDTAGQERF---RTITQSYYRS-----ANGVIIEVTSV---EYCYQ--RNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 71 ~l~i~D~~G~~~~---~~~~~~~~~~-----ad~vIlV~dit---Sf~~l--~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+.|||++|+.+. +..+..+++. ++++++|+|.+ ..... ..|+...... ......+++.||.|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6889999998663 3333233222 89999999997 22222 2344333322 23456668999999865
Q ss_pred Cc
Q psy5781 138 VR 139 (231)
Q Consensus 138 ~~ 139 (231)
..
T Consensus 177 ~~ 178 (253)
T PRK13768 177 EE 178 (253)
T ss_pred ch
Confidence 43
No 312
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.67 E-value=2.8e-05 Score=58.16 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=75.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc----ccchhhhhcccCCcEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSYYRSANGVI 98 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~~~ad~vI 98 (231)
||.++|..|+|||+|.+.+-+.... |..|..++|..+ -..||+|.- .+..-......++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999998876532 334444333211 145888842 22222344567899999
Q ss_pred EEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 99 IEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 99 lV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
+|-..+.-+. .+-..+.....+. .+-+.+|.|+..+.........+......++-++.. +-++++.+.-.
T Consensus 70 ~v~~and~~s--~f~p~f~~~~~k~--vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 70 YVHAANDPES--RFPPGFLDIGVKK--VIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred eeecccCccc--cCCcccccccccc--eEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHH
Confidence 9988881111 1111222222222 446678889986544333333344444555555555 44566655443
No 313
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.67 E-value=0.00015 Score=66.42 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcC---CCCCCcc--cceeeEEEEEE----------E---EEC-C----------
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSG---DFVEKTG--NTIGVDFSMKT----------V---NID-G---------- 67 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~---~f~~~~~--pt~~~~~~~~~----------~---~~~-~---------- 67 (231)
..+-.++|.++|.-..|||||+..+.+- ++.++.. -|+..-|.... . ... +
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 4566789999999999999999999853 2222211 12211121110 0 000 0
Q ss_pred -----eEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC-cH-hh-HHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 68 -----KKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-EY-CY-QRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 68 -----~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-Sf-~~-l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
....+.+.|++|+++|......-+..+|+++||.|.+ .. .. ..+.+. +.+... .+..+++.||.|+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVK 185 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccC
Confidence 0236899999999988766566677899999999998 21 11 112221 222222 244568899999864
No 314
>PRK12288 GTPase RsgA; Reviewed
Probab=97.66 E-value=8.8e-05 Score=65.59 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=45.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCC--Ccccc--ee--eEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSGDFVE--KTGNT--IG--VDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~~f~~--~~~pt--~~--~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
++++|.+|||||||||+++.+.-.. +.... .| .+.....+.+++. ..|.||||-.++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~------------- 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG------------- 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc-------------
Confidence 7899999999999999999764321 11110 01 1112223344322 2489999987643
Q ss_pred EEEEecCcHhhHHHHHHHHHHhc
Q psy5781 98 IIEVTSVEYCYQRNWHKQAVTLF 120 (231)
Q Consensus 98 IlV~ditSf~~l~~w~~~i~~~~ 120 (231)
++++ .-+.+...++++....
T Consensus 272 --l~~~-~~~~l~~~F~ei~~~~ 291 (347)
T PRK12288 272 --LWHL-EPEQVTQGFVEFRDYL 291 (347)
T ss_pred --CCCC-CHHHHHHhhHHHHHHh
Confidence 1111 2356677777776554
No 315
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.66 E-value=3.6e-05 Score=64.55 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=35.3
Q ss_pred EEEEeeCCCccccchhhhhcc--------cCCcEEEEEEecCcHh----hHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 71 KLQIWDTAGQERFRTITQSYY--------RSANGVIIEVTSVEYC----YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 71 ~l~i~D~~G~~~~~~~~~~~~--------~~ad~vIlV~ditSf~----~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+.|+|||||-++-..+.... ...-++|++.|..... -+..++-.+.-...-..+.+.+.+|.|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 689999999987544333222 3455888999998222 233444444444444556668889999876
No 316
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.64 E-value=0.00017 Score=63.96 Aligned_cols=82 Identities=15% Similarity=0.034 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-C-CCcccceeeEEEEEEEEECCe---------------EEEEEEeeCCCccc--
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF-V-EKTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQER-- 82 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f-~-~~~~pt~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~-- 82 (231)
+|+.++|.++||||||.+.++...- . ..|..|. .+-....+.+.+. ...+.+.|.+|-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftT-i~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTT-IEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCC-CCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 7899999999999999999997764 2 3343221 1122233444332 23678999998532
Q ss_pred -----cchhhhhcccCCcEEEEEEecC
Q psy5781 83 -----FRTITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 83 -----~~~~~~~~~~~ad~vIlV~dit 104 (231)
.....-..++++|+++.|.+..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1112344678999999999973
No 317
>KOG1954|consensus
Probab=97.62 E-value=0.00024 Score=62.42 Aligned_cols=122 Identities=14% Similarity=0.175 Sum_probs=79.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCc---ccceeeEEEEEEEE------ECCeE------------------
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT---GNTIGVDFSMKTVN------IDGKK------------------ 69 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~---~pt~~~~~~~~~~~------~~~~~------------------ 69 (231)
+-+.+--|+++|.-..||||+|+.++...|+.-. .||.. +...... ++|..
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~a 131 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNA 131 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHH
Confidence 4445567999999999999999999999886422 23332 2221111 11111
Q ss_pred ---------------EEEEEeeCCCcc-----------ccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCc
Q psy5781 70 ---------------VKLQIWDTAGQE-----------RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKY 123 (231)
Q Consensus 70 ---------------~~l~i~D~~G~~-----------~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~ 123 (231)
-.++|.||+|.- .|....+=|..++|.++|+||.--++--.++.+-|....+.+
T Consensus 132 flnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954|consen 132 FLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence 168899999832 133445667889999999999984443344455555555655
Q ss_pred ceeeecccccCCCCCcc
Q psy5781 124 KFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 124 ~~~~vv~~k~dl~~~~~ 140 (231)
.-+-++.||.|....++
T Consensus 212 dkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQ 228 (532)
T ss_pred ceeEEEeccccccCHHH
Confidence 55668888887766443
No 318
>PRK12289 GTPase RsgA; Reviewed
Probab=97.60 E-value=0.00011 Score=65.03 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=34.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC--Ccccce--e--eEEEEEEEEECCeEEEEEEeeCCCccc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVE--KTGNTI--G--VDFSMKTVNIDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~--~~~pt~--~--~~~~~~~~~~~~~~~~l~i~D~~G~~~ 82 (231)
.++++|.+|||||||||.++.+.-.. ...... | .+.....+.+++. ..|.||||-..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 37999999999999999999654321 111100 0 1122233344322 26899999654
No 319
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.59 E-value=0.00018 Score=64.04 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=37.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC----CcccceeeEEEEEEEEECCeEEEEEEeeCCCccc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE----KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~----~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 82 (231)
.++.++|.+|||||||+|+++...... ...+..|.+.....+.+++. +.|+||||-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 489999999999999999999753211 12222332333334444322 57999999653
No 320
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.57 E-value=0.00052 Score=57.00 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=53.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC--CCCC---CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch------hh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT------IT 87 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~---~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~ 87 (231)
....-|.|+|..++|||+|+|++++. .|.- ...-|.|+......+.. +....+.+.||.|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 34567899999999999999999988 6632 22344554333222221 3457799999999653211 12
Q ss_pred hhcccC--CcEEEEEEecC
Q psy5781 88 QSYYRS--ANGVIIEVTSV 104 (231)
Q Consensus 88 ~~~~~~--ad~vIlV~dit 104 (231)
...+.. ++++|+..+.+
T Consensus 84 ~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 84 LFALATLLSSVLIYNSWET 102 (224)
T ss_pred HHHHHHHHhCEEEEeccCc
Confidence 222333 78888777766
No 321
>PRK13796 GTPase YqeH; Provisional
Probab=97.56 E-value=0.00012 Score=65.18 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEEEEEECCeEEEEEEeeCCCcc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 81 (231)
.++.++|.+|||||||||+++....... ..+..|.+.....+.+++. ..|+||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999986432111 1222333333344444432 3799999964
No 322
>KOG0458|consensus
Probab=97.55 E-value=0.0003 Score=64.84 Aligned_cols=119 Identities=14% Similarity=0.122 Sum_probs=77.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCC-----------------------------CCcccceeeEEEEEEEEECCe
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-----------------------------EKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-----------------------------~~~~pt~~~~~~~~~~~~~~~ 68 (231)
+.-.+.++|+|.-.+|||||+-+++.+--. ......-|+...+....++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 335789999999999999999888543100 011122233444455555666
Q ss_pred EEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHhh---H-HHHHH--HHHHhcCCcceeeecccccCCCC
Q psy5781 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYCY---Q-RNWHK--QAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~~---l-~~w~~--~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
...++|.|.||+..|..-.-.-...||+.|||.|.+ .|+. . ...++ .+.+.++ ..-.+++.||.|+..
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVS 329 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccC
Confidence 788999999999888776666677899999999999 4442 2 12222 2233333 222456778887654
No 323
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00047 Score=66.03 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=76.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC--CCCC--Ccc------------cceeeEEEEEEEEECCe-EEEEEEeeCCCc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE--KTG------------NTIGVDFSMKTVNIDGK-KVKLQIWDTAGQ 80 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~--~~~------------pt~~~~~~~~~~~~~~~-~~~l~i~D~~G~ 80 (231)
..+.-+|.++|.-..|||||..+++.. .... +.. ..-|+......+....+ .+.++|.||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 566789999999999999999999742 1111 000 11122222233333223 589999999999
Q ss_pred cccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
-+|.......++-+|++|+|+|.. ..+.-.-|+...+ ...+.++..||.|-.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~ 141 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL 141 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc
Confidence 999999999999999999999999 4444345554443 233445566665543
No 324
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.51 E-value=0.00018 Score=60.63 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=45.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC--Cccccee----eEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVE--KTGNTIG----VDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~--~~~pt~~----~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.++++|.+|||||||||+++...-.. +.....+ .+.....+.+++ -.|+||||-..+.-.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~l~---------- 187 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFGLW---------- 187 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccCCC----------
Confidence 68999999999999999999754322 1111000 111222333333 269999997643211
Q ss_pred EEEEEecCcHhhHHHHHHHHHHhcC
Q psy5781 97 VIIEVTSVEYCYQRNWHKQAVTLFD 121 (231)
Q Consensus 97 vIlV~ditSf~~l~~w~~~i~~~~~ 121 (231)
++ +-+.+...++++.+...
T Consensus 188 -----~~-~~~~~~~~f~e~~~~~~ 206 (245)
T TIGR00157 188 -----HL-EPEQLTQGFVEFRDYLG 206 (245)
T ss_pred -----CC-CHHHHHHhCHHHHHHhC
Confidence 01 23556777777765443
No 325
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.50 E-value=0.00046 Score=62.31 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=81.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc--CCCCCC------------cccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS--GDFVEK------------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI 86 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~--~~f~~~------------~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 86 (231)
.-+|.++-.-.=|||||+..++. +.|.+. ....-|+..-.++.-++.+.++++|.||+|+.+|..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 34788899999999999999984 334321 1122233344444444445589999999999999999
Q ss_pred hhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccc
Q psy5781 87 TQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPC 141 (231)
Q Consensus 87 ~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~ 141 (231)
....+.=.|+++|+.|.. ..-.-+. -+++.+...-..+++.||+|-+..++.
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQTrF---VlkKAl~~gL~PIVVvNKiDrp~Arp~ 138 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQTRF---VLKKALALGLKPIVVINKIDRPDARPD 138 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCchhh---hHHHHHHcCCCcEEEEeCCCCCCCCHH
Confidence 899999999999999998 2222221 122333334445688999999888873
No 326
>KOG1491|consensus
Probab=97.50 E-value=0.00022 Score=61.91 Aligned_cols=87 Identities=16% Similarity=0.119 Sum_probs=58.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC---------------CeEEEEEEeeCCCcc-
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID---------------GKKVKLQIWDTAGQE- 81 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~---------------~~~~~l~i~D~~G~~- 81 (231)
....+||-+||.++||||||+|.+.+.......-|-.-+|-....+.+. .....|+++|++|--
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 4467899999999999999999999876544333333333333344442 135689999998743
Q ss_pred ---ccchh---hhhcccCCcEEEEEEecC
Q psy5781 82 ---RFRTI---TQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 82 ---~~~~~---~~~~~~~ad~vIlV~dit 104 (231)
.-..+ .-..+|.+|+++-|.+..
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEec
Confidence 22223 234467899999988765
No 327
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0005 Score=60.58 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=53.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcc-----cceeeEEEEEEEE-------EC----CeEEEEEEeeCCCc---
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTG-----NTIGVDFSMKTVN-------ID----GKKVKLQIWDTAGQ--- 80 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~-----pt~~~~~~~~~~~-------~~----~~~~~l~i~D~~G~--- 80 (231)
.+++-+||.|+||||||.+.++...-. .+|+ |..|+-+- .... +. -....+++.|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v-~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYV-PDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEec-CchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 478999999999999999999976632 3343 33332110 0000 01 12457899999873
Q ss_pred -cccchhh---hhcccCCcEEEEEEecC
Q psy5781 81 -ERFRTIT---QSYYRSANGVIIEVTSV 104 (231)
Q Consensus 81 -~~~~~~~---~~~~~~ad~vIlV~dit 104 (231)
.+-+.+- -.-+|.+|+++.|+|..
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2333333 33477899999999886
No 328
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.42 E-value=0.00024 Score=56.45 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~ 77 (231)
||++.|++|+|||||+++++..- ...-.+..| |++..+.-+|..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999988432 111234455 66666666777777777776
No 329
>KOG1490|consensus
Probab=97.34 E-value=0.00023 Score=64.72 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=73.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEE---CCeEEEEEEeeCCCcccc----chhhh--
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI---DGKKVKLQIWDTAGQERF----RTITQ-- 88 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~---~~~~~~l~i~D~~G~~~~----~~~~~-- 88 (231)
+...-.++++|-++||||||++........-...+ |.++.+.+ +-+-...++.||||.-+. +....
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYa-----FTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmq 239 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYA-----FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ 239 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcc-----cccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHH
Confidence 34456789999999999999988876654322222 22222222 234467788899994321 11111
Q ss_pred ---hcccCCcEEEEEEecC-----cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 89 ---SYYRSANGVIIEVTSV-----EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 89 ---~~~~~ad~vIlV~dit-----Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
....--.+|+++.|++ |.+.--..+..|+..+.+...+ ++.||+|+..-.
T Consensus 240 sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~I-lvlNK~D~m~~e 297 (620)
T KOG1490|consen 240 IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTI-LVLNKIDAMRPE 297 (620)
T ss_pred HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceE-EEeecccccCcc
Confidence 1111225799999999 7777778888888777666554 778888876533
No 330
>KOG1145|consensus
Probab=97.33 E-value=0.0014 Score=60.37 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=81.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 93 (231)
.++.-=|.++|.-.=||||||-.|-+...... ....+| -+...+. +| -++++.||||+..|..|+..-.+-
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIG--AF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~v 224 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIG--AFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANV 224 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceec--eEEEecC-CC--CEEEEecCCcHHHHHHHHhccCcc
Confidence 44556688999999999999998876554321 112233 3323333 44 678999999999999999999999
Q ss_pred CcEEEEEEecCcHhhH-HHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 94 ANGVIIEVTSVEYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 94 ad~vIlV~ditSf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
+|.+|||.... +-+ ..-.+.|........++++..||+|-+...+
T Consensus 225 tDIvVLVVAad--DGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~p 270 (683)
T KOG1145|consen 225 TDIVVLVVAAD--DGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANP 270 (683)
T ss_pred ccEEEEEEEcc--CCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCH
Confidence 99999999988 111 1233344445556667778889999766554
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.32 E-value=0.00049 Score=59.30 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCC--cccc--ee--eEEEEEEEEECCeEEEEEEeeCCCcccc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEK--TGNT--IG--VDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~--~~pt--~~--~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 83 (231)
-.++++|.+|||||||+|.+++...... ...+ .| .+.....+...+. ..++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 4799999999999999999997543221 1100 01 1122223333321 258999998764
No 332
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.0023 Score=50.20 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=42.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCC
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~ 78 (231)
...||.+.|.+||||||++.++.+.--..- -+++ -+.+..+.-+|+.+=+.|.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvg-Gf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVG-GFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceee-eEEeeeeecCCeEeeeEEEEcc
Confidence 458999999999999999999885321111 1222 3777788888888889999986
No 333
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.0021 Score=56.31 Aligned_cols=125 Identities=16% Similarity=0.167 Sum_probs=76.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCC--CC-----------------------------cccceeeEEEEEEEEEC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV--EK-----------------------------TGNTIGVDFSMKTVNID 66 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~--~~-----------------------------~~pt~~~~~~~~~~~~~ 66 (231)
....+|++-+|.--=||||||=|++.+.-. ++ -....|+...+...+..
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 456799999999999999999999754210 00 00111111221112222
Q ss_pred CeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcccccc
Q psy5781 67 GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFH 144 (231)
Q Consensus 67 ~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~ 144 (231)
-.+-++.|-||||+++|-...-.-...||+.|++.|.. -.+.- +-..-|... -.-+...+..||.||..-.+..+.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QT-rRHs~I~sL-LGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQT-RRHSFIASL-LGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHh-HHHHHHHHH-hCCcEEEEEEeeecccccCHHHHH
Confidence 23457889999999998765555667899999999997 22221 111122222 234445577899999886654333
No 334
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.26 E-value=0.0023 Score=57.61 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=66.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcC----CCCCC----------ccccee-------eEE---EEEEEEE-CCeEEEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSG----DFVEK----------TGNTIG-------VDF---SMKTVNI-DGKKVKLQI 74 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~----~f~~~----------~~pt~~-------~~~---~~~~~~~-~~~~~~l~i 74 (231)
..+-|.|+|+-++|||||+++|.+. ..... ..+..| .-| ....+.. ++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3577999999999999999999877 22210 111122 112 1122222 456678999
Q ss_pred eeCCCccc--------cch--h-------------------hhhccc-CCcEEEEEE-ecC-------cHhhH-HHHHHH
Q psy5781 75 WDTAGQER--------FRT--I-------------------TQSYYR-SANGVIIEV-TSV-------EYCYQ-RNWHKQ 115 (231)
Q Consensus 75 ~D~~G~~~--------~~~--~-------------------~~~~~~-~ad~vIlV~-dit-------Sf~~l-~~w~~~ 115 (231)
.||.|-.. -.. + .+.-++ .++..|+|. |-+ .+... .+|+++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99998321 111 0 233445 889888888 664 33333 356666
Q ss_pred HHHhcCCcceeeecccccC
Q psy5781 116 AVTLFDKYKFGHAFSTSLA 134 (231)
Q Consensus 116 i~~~~~~~~~~~vv~~k~d 134 (231)
+++ ..++-+++.|+.+
T Consensus 176 Lk~---~~kPfiivlN~~d 191 (492)
T TIGR02836 176 LKE---LNKPFIILLNSTH 191 (492)
T ss_pred HHh---cCCCEEEEEECcC
Confidence 654 3455567778877
No 335
>PRK00098 GTPase RsgA; Reviewed
Probab=97.25 E-value=0.00064 Score=58.91 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=45.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC--cccc--ee--eEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEK--TGNT--IG--VDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~--~~pt--~~--~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.++++|.+|||||||+|.+++..-... .... .| .......+.+++. ..|.||+|-..+.-
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~~~----------- 231 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSFGL----------- 231 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCccCC-----------
Confidence 689999999999999999986542211 1000 00 1111222333322 36899999754210
Q ss_pred EEEEEecCcHhhHHHHHHHHHHhcCCc
Q psy5781 97 VIIEVTSVEYCYQRNWHKQAVTLFDKY 123 (231)
Q Consensus 97 vIlV~ditSf~~l~~w~~~i~~~~~~~ 123 (231)
+++ +.+.+...+.++.......
T Consensus 232 ----~~~-~~~~~~~~f~~~~~~~~~c 253 (298)
T PRK00098 232 ----HDL-EAEELEHYFPEFRPLSGDC 253 (298)
T ss_pred ----CCC-CHHHHHHHHHHHHHHhCCC
Confidence 011 3356666777776655443
No 336
>KOG4273|consensus
Probab=97.22 E-value=0.00099 Score=55.82 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=59.4
Q ss_pred EEEEEcCCCC--cHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe--EEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 23 KVVLIGDCGV--GKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK--KVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 23 kIvvlG~~~v--GKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
-++|+|.+|| ||-.|+.|+....|..........+++.+++...-. .+.+.|.-.. .+.+ ........-..++|
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~-lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKF-LPNAEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhc-cCCcccccceeeEE
Confidence 3689999999 999999999999998776666666677665543221 2223332211 1111 11111223347899
Q ss_pred EEEecC---cHhhHHHHHHH
Q psy5781 99 IEVTSV---EYCYQRNWHKQ 115 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~ 115 (231)
+|||++ .+..++.|+.+
T Consensus 84 mvfdlse~s~l~alqdwl~h 103 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPH 103 (418)
T ss_pred EEEeccchhhhHHHHhhccc
Confidence 999999 88899999984
No 337
>KOG0099|consensus
Probab=97.22 E-value=0.0011 Score=55.90 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=34.6
Q ss_pred EEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcHh
Q psy5781 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEYC 107 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~ 107 (231)
.++++++|.+||.+-+.-|-..+.+..++|+|...+||+
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn 239 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYN 239 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchh
Confidence 367999999999998999999999999999999888444
No 338
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.12 E-value=0.0014 Score=66.65 Aligned_cols=110 Identities=16% Similarity=0.088 Sum_probs=68.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCC------cccceeeEEEEEEEEECCeEEEEEEeeCCCcc--------ccchhhhh
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSGDFVEK------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE--------RFRTITQS 89 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~~f~~~------~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~ 89 (231)
.+|||++|+||||+|.+- +-.|+-. ....++-+.+ ....+.++ -.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecCC---EEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999987 3334221 1111111111 11112222 3488999832 11222333
Q ss_pred cc---------cCCcEEEEEEecC-----cH-------hhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 90 YY---------RSANGVIIEVTSV-----EY-------CYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 90 ~~---------~~ad~vIlV~dit-----Sf-------~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
++ +-.||+|+++|+. +- ..++..+.++.+.++-..++.++.+|.|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 22 3479999999998 22 25567778888888888889999999997743
No 339
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.10 E-value=0.00091 Score=57.57 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=47.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC--Ccccce----eeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVE--KTGNTI----GVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~--~~~pt~----~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
-.+++|.+|||||||+|++..+.-.. +..... ..+....-+.+++. =.|.||||-..+.-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~l----------- 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLGL----------- 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccCc-----------
Confidence 57899999999999999998643211 111111 01123334444211 25789999765431
Q ss_pred EEEEEecCcHhhHHHHHHHHHHhcC
Q psy5781 97 VIIEVTSVEYCYQRNWHKQAVTLFD 121 (231)
Q Consensus 97 vIlV~ditSf~~l~~w~~~i~~~~~ 121 (231)
.-...+.+...+.++.+...
T Consensus 232 -----~~~~~e~l~~~F~ef~~~~~ 251 (301)
T COG1162 232 -----AHLEPEDLVQAFPEFAELAR 251 (301)
T ss_pred -----ccCCHHHHHHHhHHHHHHhc
Confidence 01156777888888877654
No 340
>KOG1424|consensus
Probab=97.07 E-value=0.001 Score=60.65 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=47.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 81 (231)
.+.-.+.|-+||=++|||||+||.+.+.+-.. ...|.|-+-+-.++.+.. .+.+.|++|--
T Consensus 310 ~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 310 RYKDVVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred CCCceeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 33347999999999999999999999988554 567888655556666643 37899999953
No 341
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.06 E-value=0.002 Score=46.43 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=52.8
Q ss_pred EEEEc-CCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 24 VVLIG-DCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 24 IvvlG-~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
|++.| ..|+|||++...+...- ...-.++.- +..|.. +.+.|+|+++.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~-------~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLL-------IDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEE-------EeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56677 55999999987765321 111112222 222322 77899999886432 23367778999999999
Q ss_pred cC--cHhhHHHHHHH
Q psy5781 103 SV--EYCYQRNWHKQ 115 (231)
Q Consensus 103 it--Sf~~l~~w~~~ 115 (231)
.+ ++..+..+++.
T Consensus 71 ~~~~s~~~~~~~~~~ 85 (104)
T cd02042 71 PSPLDLDGLEKLLET 85 (104)
T ss_pred CCHHHHHHHHHHHHH
Confidence 99 88887777664
No 342
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0035 Score=56.36 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=74.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc--CCCCC--------------------CcccceeeEEEEEEEEECCeEEEEEEeeCC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS--GDFVE--------------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~--~~f~~--------------------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~ 78 (231)
.-...+|-.|-+|||||-.+++- +.... +...-|.+...+-.+.++ .+.++|.|||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~--~~~iNLLDTP 89 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA--DCLVNLLDTP 89 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC--CeEEeccCCC
Confidence 34578899999999999998852 11110 112233333444444454 4889999999
Q ss_pred CccccchhhhhcccCCcEEEEEEecC-cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCcc
Q psy5781 79 GQERFRTITQSYYRSANGVIIEVTSV-EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 79 G~~~~~~~~~~~~~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~ 140 (231)
|+++|..-.-.-+..+|..|+|.|.. -.+.--. .|-+.|. ...+++...||.|-....|
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~---KLfeVcrlR~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL---KLFEVCRLRDIPIFTFINKLDREGRDP 150 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHH---HHHHHHhhcCCceEEEeeccccccCCh
Confidence 99998876666777899999999998 3332211 2222332 3445667788887666555
No 343
>KOG3859|consensus
Probab=97.00 E-value=0.0036 Score=53.27 Aligned_cols=63 Identities=24% Similarity=0.434 Sum_probs=46.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
.+...|+|+-||..|.|||||+..+.+-.|..+ ..|+++....+..+.-.+..++|+|.||.|
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 356789999999999999999999998887653 335554333222222346788999999987
No 344
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0013 Score=58.65 Aligned_cols=116 Identities=13% Similarity=0.062 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeeEEE------------------EEEEEEC---------CeEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGD---FVEKTGNTIGVDFS------------------MKTVNID---------GKKVK 71 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~---f~~~~~pt~~~~~~------------------~~~~~~~---------~~~~~ 71 (231)
-.++++|++||||||++.++.... +.....--+..|.+ ...+... -....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 468899999999999999987531 11000000000111 0011100 12457
Q ss_pred EEEeeCCCccccchh----hhh--cccCCcEEEEEEecC-cHhhHHHHHHHHHHhcCC-----cceeeecccccCCCC
Q psy5781 72 LQIWDTAGQERFRTI----TQS--YYRSANGVIIEVTSV-EYCYQRNWHKQAVTLFDK-----YKFGHAFSTSLAMPQ 137 (231)
Q Consensus 72 l~i~D~~G~~~~~~~----~~~--~~~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~-----~~~~~vv~~k~dl~~ 137 (231)
+.|+||+|....+.. ... ......-.+||.+.+ ..+.+...+....+.... ..+..++.+|+|-..
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 889999997643321 111 112334568999999 666666555555444311 124456678877544
No 345
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.83 E-value=0.0053 Score=54.91 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=65.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceee---EEEEE-----------------EEEEC----------CeEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGV---DFSMK-----------------TVNID----------GKKV 70 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~---~~~~~-----------------~~~~~----------~~~~ 70 (231)
.=.|++||+.||||||-+-.+...-........+++ |.|.- .+-.+ -+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 446899999999999988776643331212222221 11100 00000 1346
Q ss_pred EEEEeeCCCccccchh----hhhcccC--CcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 71 KLQIWDTAGQERFRTI----TQSYYRS--ANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 71 ~l~i~D~~G~~~~~~~----~~~~~~~--ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
.+.+.||.|...++.. ...++.. ..-+.||.+.| ..+.+.+.++.+ ..-++..++.+|+|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f----~~~~i~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF----SLFPIDGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh----ccCCcceeEEEccccc
Confidence 8899999997755433 2333332 34567888888 777777766665 3344555666776643
No 346
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.83 E-value=0.0042 Score=45.28 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=54.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--c
Q psy5781 28 GDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--E 105 (231)
Q Consensus 28 G~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--S 105 (231)
+..|+|||++...+...--......+.-.|.... . ...+.|.|+++.... .....+..+|.++++.+.+ +
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s 78 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----F-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPS 78 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----C-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHH
Confidence 4569999998877753221110122222222211 1 116889999875432 3345678899999999999 8
Q ss_pred HhhHHHHHHHHHHhcC
Q psy5781 106 YCYQRNWHKQAVTLFD 121 (231)
Q Consensus 106 f~~l~~w~~~i~~~~~ 121 (231)
...+..+.+.+++...
T Consensus 79 ~~~~~~~~~~l~~~~~ 94 (106)
T cd03111 79 IRNAKRLLELLRVLDY 94 (106)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8888888888876543
No 347
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.79 E-value=0.0047 Score=56.07 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=61.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc------CCC----CCCc-----------ccceeeEEEEEEEEEC------------
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS------GDF----VEKT-----------GNTIGVDFSMKTVNID------------ 66 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~------~~f----~~~~-----------~pt~~~~~~~~~~~~~------------ 66 (231)
...-|+++|.+||||||++..+.. .+. .+.| ....+++++......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 456799999999999999988862 110 0111 1112222221110001
Q ss_pred -CeEEEEEEeeCCCccccchh----hhhc--ccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 67 -GKKVKLQIWDTAGQERFRTI----TQSY--YRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 67 -~~~~~l~i~D~~G~~~~~~~----~~~~--~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
...+.+.|.||+|....+.. ...+ ..+.+-++||.|.+.-.+.....+.+.+ ...+..++.+|+|-.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---SVDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---ccCCcEEEEECccCC
Confidence 12478899999996543221 1111 2356789999998833333333333332 224555677777654
No 348
>KOG1144|consensus
Probab=96.76 E-value=0.0031 Score=59.97 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=60.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEE----------------EEEECCeEEEEEEee
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMK----------------TVNIDGKKVKLQIWD 76 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~----------------~~~~~~~~~~l~i~D 76 (231)
++-+--=|+|+|.-..|||-|+-.+-+.....- ...-+|.+|... ++.+. -+.+.|
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP----g~lvId 546 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP----GLLVID 546 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC----eeEEec
Confidence 344555699999999999999998876443321 112233333221 12222 367899
Q ss_pred CCCccccchhhhhcccCCcEEEEEEecC
Q psy5781 77 TAGQERFRTITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 77 ~~G~~~~~~~~~~~~~~ad~vIlV~dit 104 (231)
|+|++.|..++......||.+|||.||.
T Consensus 547 tpghEsFtnlRsrgsslC~~aIlvvdIm 574 (1064)
T KOG1144|consen 547 TPGHESFTNLRSRGSSLCDLAILVVDIM 574 (1064)
T ss_pred CCCchhhhhhhhccccccceEEEEeehh
Confidence 9999999999999999999999999998
No 349
>KOG0461|consensus
Probab=96.76 E-value=0.013 Score=51.35 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=56.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHc----CCCCCCccc-----ceeeEEEEEEEEE-----CCeEEEEEEeeCCCccc
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRS----GDFVEKTGN-----TIGVDFSMKTVNI-----DGKKVKLQIWDTAGQER 82 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~----~~f~~~~~p-----t~~~~~~~~~~~~-----~~~~~~l~i~D~~G~~~ 82 (231)
..+.++++-++|.-.+|||+|.+++.. ..|.....+ |...-|..-.+.. +++...+.+.|++|+..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 345669999999999999999999963 234332221 2222222222211 46678889999999875
Q ss_pred cchhhhhcccCCcEEEEEEecC
Q psy5781 83 FRTITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~dit 104 (231)
.....-.-..-.|..++|.|+.
T Consensus 83 LIRtiiggaqiiDlm~lviDv~ 104 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQ 104 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehh
Confidence 4333233333458899999998
No 350
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.74 E-value=0.004 Score=54.73 Aligned_cols=61 Identities=8% Similarity=-0.093 Sum_probs=40.3
Q ss_pred EEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 69 KVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+.+.|.||+|..+-... ....+|.+++|.+..+-+.++.....+.+.. .+++.||.|+..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a-----DIiVVNKaDl~~ 208 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMELA-----DLIVINKADGDN 208 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhhh-----heEEeehhcccc
Confidence 467899999986633222 4567999999977556666655444343333 258889998764
No 351
>KOG3887|consensus
Probab=96.74 E-value=0.002 Score=53.83 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=60.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEE---ECCeEEEEEEeeCCCccccch---hhhhccc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVN---IDGKKVKLQIWDTAGQERFRT---ITQSYYR 92 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~---~~~~~~~l~i~D~~G~~~~~~---~~~~~~~ 92 (231)
..+-+|+++|...+||||+-+-...+--+.+ |...+.. ..+. +-+.-+.+++||.|||-.+-. -....++
T Consensus 25 ~~kp~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflEST-ski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~ 100 (347)
T KOG3887|consen 25 GMKPRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLEST-SKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFR 100 (347)
T ss_pred CCCceEEEEeecccCcchhhheeeeccCCCc---eeEeecc-CcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHh
Confidence 3445699999999999998665554432221 1111111 1111 112446899999999975422 1345688
Q ss_pred CCcEEEEEEecC--cHhhHHHHHHHHHHhc
Q psy5781 93 SANGVIIEVTSV--EYCYQRNWHKQAVTLF 120 (231)
Q Consensus 93 ~ad~vIlV~dit--Sf~~l~~w~~~i~~~~ 120 (231)
.+-++|+|.|.. -.+.+.+....+.+..
T Consensus 101 ~~gALifvIDaQddy~eala~L~~~v~ray 130 (347)
T KOG3887|consen 101 GVGALIFVIDAQDDYMEALARLHMTVERAY 130 (347)
T ss_pred ccCeEEEEEechHHHHHHHHHHHHHhhhee
Confidence 999999999998 4455555555555544
No 352
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.70 E-value=0.007 Score=47.77 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=39.0
Q ss_pred EEEEEEeeCCCcccc-----chhhhh-cccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 69 KVKLQIWDTAGQERF-----RTITQS-YYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~-----~~~~~~-~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+.+.|.|++|...+ ..+... .....+.+++|.|..+......+...+.+..+ ...++.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~---~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALG---ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCC---CCEEEEECCcCCC
Confidence 356788999987422 111111 11348999999998844444455555544433 4556778877654
No 353
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.70 E-value=0.006 Score=47.77 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999999865
No 354
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0051 Score=55.70 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=62.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCC---CCCc---------c-----------cceeeEEEEEEEEE-------CCeEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDF---VEKT---------G-----------NTIGVDFSMKTVNI-------DGKKV 70 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f---~~~~---------~-----------pt~~~~~~~~~~~~-------~~~~~ 70 (231)
.-+|.++|++||||||++..+..... .... . ...++.+....-.. .-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 35899999999999999987764210 0000 0 00111111000000 00234
Q ss_pred EEEEeeCCCccccch----hhhhcc--cCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 71 KLQIWDTAGQERFRT----ITQSYY--RSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 71 ~l~i~D~~G~~~~~~----~~~~~~--~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+.+.||+|...... ....+. ....-.+||.|.+ ..+.+..+.... ....+..++.+|+|-..
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f----~~~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY----QGHGIHGCIITKVDEAA 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh----cCCCCCEEEEEeeeCCC
Confidence 678999999654221 112221 1234678999999 677776666554 34455567778877544
No 355
>KOG2486|consensus
Probab=96.66 E-value=0.0029 Score=53.75 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=65.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-cceeeEEEEEEEEECCeEEEEEEeeCCC----------ccccchh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTG-NTIGVDFSMKTVNIDGKKVKLQIWDTAG----------QERFRTI 86 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~-pt~~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~ 86 (231)
.+...+++++|.++|||||||+.++...-..... ++.|.......+.++ -.+.+.|.+| .+++..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence 5677899999999999999999999766544333 244422222333333 4678889998 2345556
Q ss_pred hhhcccCCc---EEEEEEecC-cHhhH----HHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 87 TQSYYRSAN---GVIIEVTSV-EYCYQ----RNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 87 ~~~~~~~ad---~vIlV~dit-Sf~~l----~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
...|+.+.+ -+++..|.+ .+... ..|..+ ...+..++.+|+|-..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhh
Confidence 666665543 344455665 33332 344443 2333445566665433
No 356
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.65 E-value=0.0016 Score=48.00 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
+|+|.|.+|+||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 357
>PRK08118 topology modulation protein; Reviewed
Probab=96.60 E-value=0.0018 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
||+|+|.+|+|||||.+++...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999998854
No 358
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.57 E-value=0.012 Score=52.81 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=54.7
Q ss_pred cceeeEEEEEEEEE-CCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcHh----------hHHHHHHHHHHhc
Q psy5781 52 NTIGVDFSMKTVNI-DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEYC----------YQRNWHKQAVTLF 120 (231)
Q Consensus 52 pt~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~----------~l~~w~~~i~~~~ 120 (231)
+|.|+ ....+.+ ++ ..+.++|++|+..-+.-|.+++.+.++||+|.+++.|+ ++.+-+......+
T Consensus 221 ~T~Gi--~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~ 296 (389)
T PF00503_consen 221 KTTGI--TEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESIC 296 (389)
T ss_dssp --SSE--EEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHH
T ss_pred CCCCe--eEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHH
Confidence 45552 2234444 44 77899999999988999999999999999999998332 3444444444444
Q ss_pred C----CcceeeecccccCCCC
Q psy5781 121 D----KYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 121 ~----~~~~~~vv~~k~dl~~ 137 (231)
. .....+++.||.|+-.
T Consensus 297 ~~~~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 297 NNPWFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp TSGGGTTSEEEEEEE-HHHHH
T ss_pred hCcccccCceEEeeecHHHHH
Confidence 3 3445677888887654
No 359
>KOG0410|consensus
Probab=96.57 E-value=0.0046 Score=53.73 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcc--cceeeEEEEEEEEECCeEEEEEEeeCCCcc---------ccchhhhhcc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTG--NTIGVDFSMKTVNIDGKKVKLQIWDTAGQE---------RFRTITQSYY 91 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~--pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~ 91 (231)
-|.|+|=.++||||||+.+.......+.. .|.. ...+....... -.+-+-||-|-- .|... -.-.
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLD--pT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~AT-LeeV 255 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLD--PTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQAT-LEEV 255 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheecc--chhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHH-HHHH
Confidence 58899999999999999999544322111 2221 22223333322 345677998832 22222 2234
Q ss_pred cCCcEEEEEEecC
Q psy5781 92 RSANGVIIEVTSV 104 (231)
Q Consensus 92 ~~ad~vIlV~dit 104 (231)
..+|.++-|.|++
T Consensus 256 aeadlllHvvDiS 268 (410)
T KOG0410|consen 256 AEADLLLHVVDIS 268 (410)
T ss_pred hhcceEEEEeecC
Confidence 5789999999999
No 360
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0047 Score=57.25 Aligned_cols=83 Identities=16% Similarity=0.304 Sum_probs=53.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
+.+..+=+.|+|++|.||||||+.++.. |.. .|+. +..-...-+.|+.-++++.+++. +...+.+ ...-||.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr-~tk---~ti~-~i~GPiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRR-FTK---QTID-EIRGPITVVSGKTRRITFLECPS--DLHQMID-VAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHH-HHH---hhhh-ccCCceEEeecceeEEEEEeChH--HHHHHHh-HHHhhhe
Confidence 4456778889999999999999888743 222 1111 11111123456778899999983 3333322 3446899
Q ss_pred EEEEEecC-cHh
Q psy5781 97 VIIEVTSV-EYC 107 (231)
Q Consensus 97 vIlV~dit-Sf~ 107 (231)
++|..|-+ -|+
T Consensus 137 VlLlIdgnfGfE 148 (1077)
T COG5192 137 VLLLIDGNFGFE 148 (1077)
T ss_pred eEEEeccccCce
Confidence 99999998 444
No 361
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.012 Score=54.63 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=60.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC---C-----C--CC--Ccc-----------cceeeEEEEEEEEE---------CCe
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG---D-----F--VE--KTG-----------NTIGVDFSMKTVNI---------DGK 68 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~---~-----f--~~--~~~-----------pt~~~~~~~~~~~~---------~~~ 68 (231)
.-.|+++|..|+||||++..+... . . .. .|. ...++.+.. ..- .-.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~--a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE--ADSAESLLDLLERLR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEe--cCcHHHHHHHHHHhc
Confidence 357889999999999999888642 1 0 00 000 001111110 000 012
Q ss_pred EEEEEEeeCCCccccchhhh---hccc--CCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 69 KVKLQIWDTAGQERFRTITQ---SYYR--SANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~~---~~~~--~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+.+.|.||+|........- ..+. .....+||.+.+ +...+...++.+... .+..++.+|+|-..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f~~~----~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHA----KPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHHHhh----CCeEEEEecCcCcc
Confidence 46889999999643221100 0011 123567788888 777766665555432 34557888887643
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.48 E-value=0.0056 Score=52.39 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=39.0
Q ss_pred EEEEEEeeCCCccccchhh----h--------hcccCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCC
Q psy5781 69 KVKLQIWDTAGQERFRTIT----Q--------SYYRSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAM 135 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~~~----~--------~~~~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl 135 (231)
.+.+.|.||+|....+... . ..-...|.++||.|.+ ..+.+. +.....+.. .+..++.+|+|-
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~~---~~~g~IlTKlDe 229 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEAV---GLTGIILTKLDG 229 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhhC---CCCEEEEEccCC
Confidence 4788999999975432211 1 1112378999999999 444443 233333322 355677888876
Q ss_pred CC
Q psy5781 136 PQ 137 (231)
Q Consensus 136 ~~ 137 (231)
..
T Consensus 230 ~~ 231 (272)
T TIGR00064 230 TA 231 (272)
T ss_pred CC
Confidence 54
No 363
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.47 E-value=0.0083 Score=48.02 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=38.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEee--CC-CccccchhhhhcccCCcEEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD--TA-GQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D--~~-G~~~~~~~~~~~~~~ad~vIl 99 (231)
.+.++|++|+|||||++.+.+-. .|+.| .+.+++..+.+..-+ .+ |+.+--.+......+.+.+++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL-----IPNGD------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC-----CCCCc------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 68899999999999999888542 23344 223344322211111 33 343333455666667766555
No 364
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.47 E-value=0.0023 Score=48.51 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|+++|.+|+|||||++++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999843
No 365
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.46 E-value=0.002 Score=50.39 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
||+|.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999855
No 366
>PRK07261 topology modulation protein; Provisional
Probab=96.45 E-value=0.0026 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
||+|+|.+|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 367
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.43 E-value=0.0048 Score=50.48 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=25.0
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 14 ~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.-.++.+..-|+++|++|+|||||++.+...
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3445556677899999999999999999754
No 368
>KOG0447|consensus
Probab=96.42 E-value=0.021 Score=52.86 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=49.3
Q ss_pred EEEEeeCCCc-------------cccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCC-cceeeecccccCCC
Q psy5781 71 KLQIWDTAGQ-------------ERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDK-YKFGHAFSTSLAMP 136 (231)
Q Consensus 71 ~l~i~D~~G~-------------~~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~ 136 (231)
++-+.|.+|- +....+...|+.+.+++|||..-.|-+.-+...-++...+++ .+..+.+.+|+|+.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlA 492 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLA 492 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchh
Confidence 6778899882 234567889999999999998777666555555555555544 34456788888887
Q ss_pred CCcc
Q psy5781 137 QVRP 140 (231)
Q Consensus 137 ~~~~ 140 (231)
..+-
T Consensus 493 Eknl 496 (980)
T KOG0447|consen 493 EKNV 496 (980)
T ss_pred hhcc
Confidence 6533
No 369
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0025 Score=51.11 Aligned_cols=23 Identities=17% Similarity=0.590 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.||+++|.+|+||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999876
No 370
>KOG2484|consensus
Probab=96.37 E-value=0.004 Score=55.30 Aligned_cols=59 Identities=31% Similarity=0.491 Sum_probs=46.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
-..-+++-|+|-++|||||+||.+...+... .-++.|++...+.+.++. .|.|.|.+|.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCce
Confidence 4567999999999999999999999877533 446666666666677764 4789999984
No 371
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.27 E-value=0.026 Score=39.04 Aligned_cols=79 Identities=23% Similarity=0.208 Sum_probs=50.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh-hhhcccCCcEEEEEEe
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI-TQSYYRSANGVIIEVT 102 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~ad~vIlV~d 102 (231)
+++.|..|+|||++...+...--.. + + +...++ .+.|.|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g--~--~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------G--K--RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------C--C--eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999998887432111 1 1 112222 6789999876532221 2456668899999999
Q ss_pred cC--cHhhHHHHHHHH
Q psy5781 103 SV--EYCYQRNWHKQA 116 (231)
Q Consensus 103 it--Sf~~l~~w~~~i 116 (231)
.. +........++.
T Consensus 68 ~~~~~~~~~~~~~~~~ 83 (99)
T cd01983 68 PEALAVLGARRLTEVV 83 (99)
T ss_pred CchhhHHHHHHHHHHH
Confidence 88 666665554433
No 372
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.24 E-value=0.019 Score=44.12 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=38.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC-ccccchhhhhcccCCcEEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG-QERFRTITQSYYRSANGVII 99 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G-~~~~~~~~~~~~~~ad~vIl 99 (231)
.++++|++|+|||||++.+.+-. .|+.| .+.+++...-..+...++ +.+--.+......+.+.+++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~-----~~~~G------~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL-----EPDEG------IVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-----CCCce------EEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999987643 23344 234444321112222444 33333355666667765555
No 373
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.15 E-value=0.0047 Score=45.86 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999865
No 374
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0045 Score=51.82 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|.+||++|||||||++-+.+=
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988753
No 375
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.09 E-value=0.0088 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~~ 45 (231)
+.++|++||||||+++.+.+=.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999998654
No 376
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.08 E-value=0.0051 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++|+|.+|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5899999999999999977754
No 377
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.08 E-value=0.018 Score=43.86 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|++.|+.|+|||+|++.++..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999865
No 378
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.07 E-value=0.014 Score=44.53 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=60.3
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC
Q psy5781 25 VLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 25 vvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit 104 (231)
+.-|.+|+|||++...+...-- ..-..+.-+|... ......+.+.|+|+++.. .......+..+|.+++|.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4557789999999877653211 1111122222110 000112678999998743 223356788999999999999
Q ss_pred --cHhhHHHHHHHHHHhcCCcceeeecccccC
Q psy5781 105 --EYCYQRNWHKQAVTLFDKYKFGHAFSTSLA 134 (231)
Q Consensus 105 --Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~d 134 (231)
++......++.+.+.....+ ..++.|+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~~~~~-~~lVvN~~~ 108 (139)
T cd02038 78 PTSITDAYALIKKLAKQLRVLN-FRVVVNRAE 108 (139)
T ss_pred hhHHHHHHHHHHHHHHhcCCCC-EEEEEeCCC
Confidence 77777666666655443332 335566653
No 379
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.05 E-value=0.0052 Score=49.56 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.=|+++|++|+|||||+++++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999865
No 380
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.04 E-value=0.0066 Score=44.62 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV 47 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~ 47 (231)
-.++++|++|+|||+++..++..-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999866543
No 381
>KOG0066|consensus
Probab=95.97 E-value=0.037 Score=50.29 Aligned_cols=100 Identities=13% Similarity=0.189 Sum_probs=56.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCC------cccceee----------------EEEEEEEEEC------------
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEK------TGNTIGV----------------DFSMKTVNID------------ 66 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~------~~pt~~~----------------~~~~~~~~~~------------ 66 (231)
.-||++||+.|||||||+.-+++.--+.+ ..-.+|+ +|-.+.+++.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 34899999999999999998886532211 1111110 0111111111
Q ss_pred --CeEEEEEEeeCCCccccc-hhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhc
Q psy5781 67 --GKKVKLQIWDTAGQERFR-TITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLF 120 (231)
Q Consensus 67 --~~~~~l~i~D~~G~~~~~-~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~ 120 (231)
...-.+.|-|.+|...-+ .+....+...|++||==-.+ ..+.|...-+.|+++.
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~ 751 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN 751 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc
Confidence 112367889987655433 45677777888877743222 4555555555555543
No 382
>PRK06217 hypothetical protein; Validated
Probab=95.96 E-value=0.0069 Score=48.44 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-||+|+|.+|+|||||..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 383
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.96 E-value=0.0061 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999988754
No 384
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.96 E-value=0.0069 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|+++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999754
No 385
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.95 E-value=0.0067 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.++++|++|+|||||++++-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999998864
No 386
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.93 E-value=0.0079 Score=40.28 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|++.|.+|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998854
No 387
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.0053 Score=49.27 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.=+++.|++|||||||++++..+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999765
No 388
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.0065 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|||||||+|-..+-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 5899999999999999988753
No 389
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.91 E-value=0.0075 Score=49.16 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++|.++|..|+|||||+++++..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999988753
No 390
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.90 E-value=0.0068 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|+|+|++|+|||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998754
No 391
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.012 Score=49.10 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccccee
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG 55 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~ 55 (231)
-|++||++|+|||||++.+.+ -.+|+.|
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng-----l~d~t~G 59 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG-----LVDPTSG 59 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc-----ccCCCcc
Confidence 489999999999999998876 2345555
No 392
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.89 E-value=0.0094 Score=39.24 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.++.|++|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999987753
No 393
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.88 E-value=0.0068 Score=51.32 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy5781 24 VVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~ 43 (231)
++++|++|+|||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999975
No 394
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.88 E-value=0.0067 Score=53.34 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy5781 24 VVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~ 43 (231)
++++|++|||||||++.+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 79999999999999999975
No 395
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.87 E-value=0.0077 Score=46.03 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 396
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.83 E-value=0.0086 Score=47.89 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~ 42 (231)
-+++++|++|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999999886
No 397
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.81 E-value=0.019 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999988653
No 398
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.81 E-value=0.0082 Score=47.55 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|+++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999864
No 399
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.81 E-value=0.0073 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
=+++.|++|+|||++++++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998653
No 400
>KOG2485|consensus
Probab=95.77 E-value=0.012 Score=50.89 Aligned_cols=62 Identities=23% Similarity=0.403 Sum_probs=38.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEEE-EEECCeEEEEEEeeCCCc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKT-VNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~~-~~~~~~~~~l~i~D~~G~ 80 (231)
....+.+.|+|-|||||||||+.......... .-+..|+...+.. +.+... -.+.+.||+|.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence 45678999999999999999998764332221 2223333333222 334322 24789999994
No 401
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.75 E-value=0.0078 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=16.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
--++|.|++|+|||+|++++...
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999988743
No 402
>KOG0780|consensus
Probab=95.73 E-value=0.018 Score=51.22 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=52.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHc--------------CCCCC-------CcccceeeEEEEEEEEEC---------
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRS--------------GDFVE-------KTGNTIGVDFSMKTVNID--------- 66 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~--------------~~f~~-------~~~pt~~~~~~~~~~~~~--------- 66 (231)
...+.-=|+++|..|+||||.+..|.. +.|.. ..-...+++||....+.+
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence 344555689999999999998877642 12211 001122334544322222
Q ss_pred ----CeEEEEEEeeCCCcccc-----chhhh-hcccCCcEEEEEEecC
Q psy5781 67 ----GKKVKLQIWDTAGQERF-----RTITQ-SYYRSANGVIIEVTSV 104 (231)
Q Consensus 67 ----~~~~~l~i~D~~G~~~~-----~~~~~-~~~~~ad~vIlV~dit 104 (231)
.+.+.+.|.||+|.... ..+.+ .-.-+-|-+|+|.|.+
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 35689999999996532 22211 1223579999999999
No 403
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.72 E-value=0.015 Score=54.25 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
+++++|++|+|||||++-+.+- |.|+.| .+.++|.
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~-----~~p~~G------~I~i~g~ 397 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGL-----LDPLQG------EVTLDGV 397 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC-----CCCCCc------EEEECCE
Confidence 7899999999999999988743 556666 3456663
No 404
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.72 E-value=0.0096 Score=49.97 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
...+|++|+|.+|+|||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999988854
No 405
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.69 E-value=0.009 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+-.=
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999988743
No 406
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.68 E-value=0.018 Score=45.88 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccccee
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG 55 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~ 55 (231)
.|.+.|++|+|||+|++.++.= ..|+.|
T Consensus 31 ~iaitGPSG~GKStllk~va~L-----isp~~G 58 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL-----ISPTSG 58 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc-----cCCCCc
Confidence 5889999999999999998843 346666
No 407
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.68 E-value=0.0099 Score=43.87 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|+|.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988755
No 408
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.66 E-value=0.065 Score=42.39 Aligned_cols=64 Identities=6% Similarity=-0.079 Sum_probs=45.3
Q ss_pred eEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 68 ~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
..+.+.|.|+++... ......+..+|.++++...+ +...+..+.+.+++.. .+ ..++.|+.+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~--~~-~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFG--IP-VGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcC--CC-EEEEEeCCCCC
Confidence 457889999986532 13345568899999999999 7888888887776542 22 35777877654
No 409
>PF13173 AAA_14: AAA domain
Probab=95.65 E-value=0.0092 Score=44.82 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF 46 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f 46 (231)
-+++.|+.+||||+|+++++....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999999997654
No 410
>PRK14530 adenylate kinase; Provisional
Probab=95.63 E-value=0.011 Score=48.53 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+|+|+|.+|+||||+.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 411
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.63 E-value=0.031 Score=50.90 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=61.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC-----CCC------CCccc-----------ceeeEEEEEEE-----EE------
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG-----DFV------EKTGN-----------TIGVDFSMKTV-----NI------ 65 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~-----~f~------~~~~p-----------t~~~~~~~~~~-----~~------ 65 (231)
....-|+++|.+|+||||++-.+... ... +.+.| ..+++++.... .+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 34678999999999999997665422 110 11111 11112221100 00
Q ss_pred --CCeEEEEEEeeCCCccccch-h---hhh--cccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCC
Q psy5781 66 --DGKKVKLQIWDTAGQERFRT-I---TQS--YYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAM 135 (231)
Q Consensus 66 --~~~~~~l~i~D~~G~~~~~~-~---~~~--~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl 135 (231)
....+.+.|.||+|...... + ... .....+.++||.|.++-++...+...+.+.. .+..++.+|+|-
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v---~i~giIlTKlD~ 251 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERL---GLTGVVLTKLDG 251 (428)
T ss_pred HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhC---CCCEEEEeCccC
Confidence 01236789999999643221 1 111 1235788999999885555555555554333 344556666653
No 412
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.62 E-value=0.011 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF 46 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f 46 (231)
-+++.|++|+|||+|++.+...-.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999986643
No 413
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.62 E-value=0.014 Score=47.52 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
++...-|.++|.+|+|||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999999975
No 414
>PF05729 NACHT: NACHT domain
Probab=95.61 E-value=0.011 Score=45.64 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
++|.|++|+|||+++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998854
No 415
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.60 E-value=0.024 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5889999999999999999864
No 416
>PRK03839 putative kinase; Provisional
Probab=95.60 E-value=0.011 Score=46.93 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
+|+++|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
No 417
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.05 Score=46.89 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=70.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc---CCCC---CCcc--------cceeeEEEEEEEEECCeEEEEEEeeCCCccccch
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS---GDFV---EKTG--------NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT 85 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~---~~f~---~~~~--------pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 85 (231)
..++|..+|.-.=|||||...+.. +.+. ..|. ..-|+..+...++++-..-.+.-.|++|+.+|-.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 458999999999999999876642 1111 0111 1123334444555543444567889999998765
Q ss_pred hhhhcccCCcEEEEEEecC------cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 86 ITQSYYRSANGVIIEVTSV------EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 86 ~~~~~~~~ad~vIlV~dit------Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
..-.-..+.|+.|||.+.+ +-+++- +.+ .-.-+.+++..||.|+..+..
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----lar-qvGvp~ivvflnK~Dmvdd~e 145 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREHIL-----LAR-QVGVPYIVVFLNKVDMVDDEE 145 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhh-hcCCcEEEEEEecccccCcHH
Confidence 4333445679999999998 333221 111 123345667889999887544
No 418
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.56 E-value=0.011 Score=46.88 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.|+++|.+|+||||+++++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999973
No 419
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.56 E-value=0.012 Score=43.20 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy5781 23 KVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~ 42 (231)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999999976
No 420
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.55 E-value=0.013 Score=50.02 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=65.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC---------------------CcccceeeEEEEEEEE---------E-CCeEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE---------------------KTGNTIGVDFSMKTVN---------I-DGKKV 70 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~---------------------~~~pt~~~~~~~~~~~---------~-~~~~~ 70 (231)
-+|+++|.+|+|||+++..+...-... .+....+.++....-. . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 599999999999999988775321100 0111122121110000 0 01246
Q ss_pred EEEEeeCCCccccch--h--hhhcc--cCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 71 KLQIWDTAGQERFRT--I--TQSYY--RSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 71 ~l~i~D~~G~~~~~~--~--~~~~~--~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.+.|.||+|...... + +..++ ...+-++||.|.+ ..+.+..+.+.... -.+..++.+|+|-..
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD----IHIDGIVFTKFDETA 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC----CCCCEEEEEeecCCC
Confidence 889999999763221 1 12222 2346789999998 77777777776643 455667788877654
No 421
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.53 E-value=0.012 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|.|+|..++|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999865
No 422
>PRK13695 putative NTPase; Provisional
Probab=95.52 E-value=0.012 Score=46.50 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+||+++|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998653
No 423
>KOG0448|consensus
Probab=95.52 E-value=0.083 Score=50.12 Aligned_cols=119 Identities=14% Similarity=0.214 Sum_probs=71.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeE----------------------------------------
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVD---------------------------------------- 57 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~~pt~~~~---------------------------------------- 57 (231)
+...||++-|+.+.|||+++|.++.++..+ ...++..+-
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 446799999999999999999998665432 111211100
Q ss_pred --EEEEEEEECCeE-----EEEEEeeCCCcc---ccchhhhhcccCCcEEEEEEecC-cHhhH-HHHHHHHHHhcCCcce
Q psy5781 58 --FSMKTVNIDGKK-----VKLQIWDTAGQE---RFRTITQSYYRSANGVIIEVTSV-EYCYQ-RNWHKQAVTLFDKYKF 125 (231)
Q Consensus 58 --~~~~~~~~~~~~-----~~l~i~D~~G~~---~~~~~~~~~~~~ad~vIlV~dit-Sf~~l-~~w~~~i~~~~~~~~~ 125 (231)
.....+.++... -.+.+.|.+|-. +...-...+..++|++|||.... .+..- ..++..+. .+++.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs---~~Kpn 263 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVS---EEKPN 263 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhh---ccCCc
Confidence 001112221111 145677888743 34445677788999999999888 33332 23333333 33566
Q ss_pred eeecccccCCCCCcc
Q psy5781 126 GHAFSTSLAMPQVRP 140 (231)
Q Consensus 126 ~~vv~~k~dl~~~~~ 140 (231)
+.++.||.|...+.+
T Consensus 264 iFIlnnkwDasase~ 278 (749)
T KOG0448|consen 264 IFILNNKWDASASEP 278 (749)
T ss_pred EEEEechhhhhcccH
Confidence 778888988776543
No 424
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.48 E-value=0.013 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5799999999999999999864
No 425
>PRK10646 ADP-binding protein; Provisional
Probab=95.48 E-value=0.068 Score=41.76 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|++-|+=|+|||+|++.++..
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999864
No 426
>PRK13949 shikimate kinase; Provisional
Probab=95.44 E-value=0.014 Score=46.25 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
||+++|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 427
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.43 E-value=0.03 Score=42.15 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|++-|+=|+|||+|++.++..
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999854
No 428
>PRK02496 adk adenylate kinase; Provisional
Probab=95.41 E-value=0.015 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.||+|+|.+|+||||+...+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988743
No 429
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.39 E-value=0.015 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 430
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.38 E-value=0.038 Score=46.43 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6789999999999999999864
No 431
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.38 E-value=0.038 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.+.++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998753
No 432
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.38 E-value=0.014 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|+++|++|+|||||++.+...
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998864
No 433
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.36 E-value=0.016 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 434
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.035 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.++++|++|+|||||++.+.+-.
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57899999999999999988653
No 435
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.35 E-value=0.016 Score=47.08 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 436
>KOG0464|consensus
Probab=95.33 E-value=0.01 Score=53.15 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=67.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcC--C------CCC--------CcccceeeEEEEEEEEECCeEEEEEEeeCCC
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSG--D------FVE--------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~--~------f~~--------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G 79 (231)
+...+.-+|-++..-.+|||+...|+++- . ... .....-|+......++.|.+.+++++.||+|
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 34445668889999999999999988631 1 100 0112234445566777788889999999999
Q ss_pred ccccchhhhhcccCCcEEEEEEecC
Q psy5781 80 QERFRTITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 80 ~~~~~~~~~~~~~~ad~vIlV~dit 104 (231)
+-+|+......++--||++.|||.+
T Consensus 112 hvdf~leverclrvldgavav~das 136 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDAS 136 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEecc
Confidence 9999988899999999999999998
No 437
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.039 Score=46.31 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999988864
No 438
>PRK14532 adenylate kinase; Provisional
Probab=95.31 E-value=0.015 Score=46.48 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
+|+++|.+|+||||+..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
No 439
>KOG0467|consensus
Probab=95.31 E-value=0.051 Score=52.07 Aligned_cols=110 Identities=17% Similarity=0.320 Sum_probs=76.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCC------------CCC--CcccceeeEEEEEEEEECCeEEEEEEeeCCCccc
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGD------------FVE--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~------------f~~--~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 82 (231)
..+..-+|+++..-.=|||||+-.++... |.+ +-..+-|++.....+..-.+.+.+++.|++|+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 44566788999999999999998886431 111 1223444444444444444568999999999999
Q ss_pred cchhhhhcccCCcEEEEEEecC------cHhhHH-HHHHHHHHhcCCcceeeecccccC
Q psy5781 83 FRTITQSYYRSANGVIIEVTSV------EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLA 134 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~dit------Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~d 134 (231)
|.+......+-+|++++..|+. +..-++ -|.+.+ -.+++.||+|
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~--------~~~lvinkid 135 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGL--------KPILVINKID 135 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccC--------ceEEEEehhh
Confidence 9999999999999999999998 333332 344433 3457778877
No 440
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.30 E-value=0.015 Score=46.54 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988754
No 441
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.30 E-value=0.038 Score=44.60 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999864
No 442
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.30 E-value=0.017 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 443
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.30 E-value=0.013 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
||+|+|.+|+|||++...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 444
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.29 E-value=0.018 Score=47.96 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
...||+|+|.+|+||||+..++...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998754
No 445
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.28 E-value=0.015 Score=46.90 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|.+.|++|+|||||++.+..-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 446
>PLN02200 adenylate kinase family protein
Probab=95.26 E-value=0.026 Score=47.21 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
....+.|+|+|.+|+||||+..++..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33457899999999999999998874
No 447
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.26 E-value=0.019 Score=46.88 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
......|.++|..|+|||||+++++..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 445788999999999999999999754
No 448
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.017 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999854
No 449
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.018 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999964
No 450
>PRK08233 hypothetical protein; Provisional
Probab=95.25 E-value=0.017 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.-|++.|.+|+|||||.+++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56788899999999999999854
No 451
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.23 E-value=0.019 Score=46.77 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
....|.+.|.+|+|||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999999999988753
No 452
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.018 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 453
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.016 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999854
No 454
>PRK10867 signal recognition particle protein; Provisional
Probab=95.21 E-value=0.062 Score=49.02 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=36.9
Q ss_pred EEEEEEeeCCCccccch-h---hhh--cccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCC
Q psy5781 69 KVKLQIWDTAGQERFRT-I---TQS--YYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAM 135 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~-~---~~~--~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl 135 (231)
.+.+.|.||+|.-.... + ... .....+.+++|.|.++-++.....+.+.+.. .+..++.+|.|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~---~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEAL---GLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhC---CCCEEEEeCccC
Confidence 36789999999643211 1 011 1125678899999885455555555554322 334455677663
No 455
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.21 E-value=0.018 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988754
No 456
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.21 E-value=0.019 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988754
No 457
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.21 E-value=0.019 Score=46.82 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 458
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.019 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999998854
No 459
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.21 E-value=0.019 Score=46.28 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.++++|.+|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998753
No 460
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.042 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999864
No 461
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.20 E-value=0.019 Score=47.51 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999864
No 462
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.036 Score=47.62 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 463
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.19 E-value=0.043 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
+++++|.+|+|||||++.+.+-.
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998653
No 464
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.19 E-value=0.029 Score=53.99 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
++.++|.+|+|||||++-+++- |.|+.| .+.+||.
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl-----~~p~~G------~I~idg~ 515 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGF-----ETPESG------SVFYDGQ 515 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----CCCCCC------EEEECCE
Confidence 7899999999999999988854 456666 4556663
No 465
>KOG1487|consensus
Probab=95.18 E-value=0.063 Score=45.52 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=50.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc----c---chhhhhccc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----F---RTITQSYYR 92 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~---~~~~~~~~~ 92 (231)
.-||-++|=+.||||||+..+.+-.. ...|.-|.- ....-.+.+++ -++++.|.+|.-+ - ....-...+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl-~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTL-TTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeE-EEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEee
Confidence 44899999999999999999885432 122222221 01111222323 5799999998421 1 112334567
Q ss_pred CCcEEEEEEecC
Q psy5781 93 SANGVIIEVTSV 104 (231)
Q Consensus 93 ~ad~vIlV~dit 104 (231)
.|+.+++|.|+.
T Consensus 136 tcnli~~vld~~ 147 (358)
T KOG1487|consen 136 TCNLIFIVLDVL 147 (358)
T ss_pred cccEEEEEeecc
Confidence 899999999998
No 466
>PRK14531 adenylate kinase; Provisional
Probab=95.17 E-value=0.019 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+|+++|.+|+||||+..++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988754
No 467
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.17 E-value=0.02 Score=46.69 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999864
No 468
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.16 E-value=0.016 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
--++|.|+.|+|||+|++.+....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 357888999999999999998654
No 469
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.028 Score=46.76 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
-+++|++|+|||||.+.+.+.. .|..|.| .+.++|+
T Consensus 33 haiMGPNGsGKSTLa~~i~G~p---~Y~Vt~G------~I~~~Ge 68 (251)
T COG0396 33 HAIMGPNGSGKSTLAYTIMGHP---KYEVTEG------EILFDGE 68 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCC---CceEecc------eEEECCc
Confidence 4789999999999999999764 5777776 4555664
No 470
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.15 E-value=0.048 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999988653
No 471
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.14 E-value=0.019 Score=47.18 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 472
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.14 E-value=0.046 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999864
No 473
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.13 E-value=0.034 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl 42 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRL 42 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999998865
No 474
>PHA00729 NTP-binding motif containing protein
Probab=95.13 E-value=0.021 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+|++.|.+|+|||+|..++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 475
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.13 E-value=0.02 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988754
No 476
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.12 E-value=0.034 Score=47.09 Aligned_cols=18 Identities=44% Similarity=0.709 Sum_probs=15.7
Q ss_pred EEEEcCCCCcHHHHHHHH
Q psy5781 24 VVLIGDCGVGKTCVVHRF 41 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~ 41 (231)
++++|++|+||||+++.+
T Consensus 30 ~vliGpSGsGKTTtLkMI 47 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMI 47 (309)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 689999999999998654
No 477
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.12 E-value=0.031 Score=46.73 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKK 69 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~ 69 (231)
+|-+||.+|+|||||++-+.+- +.||.| .+.++|+-
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi-----~~Pt~G------~v~v~G~v 90 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGI-----YKPTSG------KVKVTGKV 90 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCc-----cCCCCc------eEEEcceE
Confidence 7899999999999999877643 678888 45556643
No 478
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.048 Score=46.43 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.+.++|.+|+|||||++.+.+-.
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68899999999999999998653
No 479
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.11 E-value=0.021 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 480
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.11 E-value=0.015 Score=45.26 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|+++|.+|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999998855
No 481
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.11 E-value=0.019 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|.+|+|||||++.+.+-
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999864
No 482
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.021 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999998854
No 483
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.11 E-value=0.016 Score=47.74 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy5781 24 VVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~ 42 (231)
..++|++|||||||++.|-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 5799999999999998875
No 484
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.10 E-value=0.021 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998864
No 485
>PF13479 AAA_24: AAA domain
Probab=95.10 E-value=0.017 Score=47.53 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHH
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRF 41 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~ 41 (231)
..+|++|.|++|+|||+|+..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4689999999999999999988
No 486
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.054 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.+.++|.+|+|||||++.+.+-.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998643
No 487
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.08 E-value=0.034 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~~ 45 (231)
|.|+|.+|+|||||++.+.+.-
T Consensus 35 vtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 35 VTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred EEEEcCCCccHHHHHHHhhCcc
Confidence 7899999999999999998663
No 488
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.022 Score=45.22 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999854
No 489
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.08 E-value=0.068 Score=41.44 Aligned_cols=88 Identities=19% Similarity=0.371 Sum_probs=45.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC--CeEEEEEEeeCCCccccchh-hhhcccCCcEEEE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID--GKKVKLQIWDTAGQERFRTI-TQSYYRSANGVII 99 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~--~~~~~l~i~D~~G~~~~~~~-~~~~~~~ad~vIl 99 (231)
=|++-||=|+|||||.+-++..--.......+ +|.....+.. ..-+.+.+|=....++...+ ...|+.. +++++
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SP--TFtlv~~Y~~~~~~lyH~DlYRl~d~ee~~~lg~~e~~~~-~gv~l 103 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSP--TFTLVEEYEEGRLPLYHFDLYRLSDPEELDELGLDEYFDG-DGICL 103 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcCCCCcccCC--CeeeehhhcCCCCcEEEEeeeccCChHHhHhcCHHHHhCC-CcEEE
Confidence 47888999999999999998653322222111 1332222211 22344555555544433322 2223332 55555
Q ss_pred EEecCcHhhHHHHHHHHHHhcCCc
Q psy5781 100 EVTSVEYCYQRNWHKQAVTLFDKY 123 (231)
Q Consensus 100 V~ditSf~~l~~w~~~i~~~~~~~ 123 (231)
| +|=+.+....+..
T Consensus 104 I----------EW~e~~~~~lp~~ 117 (149)
T COG0802 104 I----------EWPERLAELLPDA 117 (149)
T ss_pred E----------ECcchhccCCCCc
Confidence 4 6766666655533
No 490
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.07 E-value=0.042 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|.+|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 491
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.07 E-value=0.021 Score=46.82 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 492
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.06 E-value=0.022 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 493
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.06 E-value=0.018 Score=47.08 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
||+|+|.+|+||||+..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 494
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.06 E-value=0.023 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999988865
No 495
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.03 E-value=0.023 Score=45.99 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 496
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.02 E-value=0.023 Score=46.31 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988865
No 497
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.02 E-value=0.023 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999864
No 498
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.022 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 499
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.02 E-value=0.022 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 500
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.01 E-value=0.027 Score=44.54 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.....-|++.|.+|+||||+.+.+...
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344568999999999999999888643
Done!