Query psy5781
Match_columns 231
No_of_seqs 219 out of 1883
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 17:49:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.1E-32 3.8E-37 226.6 13.2 156 18-173 10-171 (216)
2 2a5j_A RAS-related protein RAB 99.9 2.7E-26 9.2E-31 183.3 15.4 173 1-173 1-179 (191)
3 2ew1_A RAS-related protein RAB 99.9 4.5E-26 1.5E-30 184.6 16.1 160 14-173 19-184 (201)
4 2hup_A RAS-related protein RAB 99.9 5.4E-26 1.8E-30 183.5 14.7 159 15-173 23-188 (201)
5 3tkl_A RAS-related protein RAB 99.9 1.8E-25 6.1E-30 178.3 17.3 163 11-173 6-174 (196)
6 2oil_A CATX-8, RAS-related pro 99.9 7E-26 2.4E-30 180.8 14.8 173 1-173 1-183 (193)
7 2fu5_C RAS-related protein RAB 99.9 3.5E-26 1.2E-30 180.8 12.9 158 16-173 3-166 (183)
8 2gf9_A RAS-related protein RAB 99.9 1.7E-25 6E-30 178.1 16.9 163 11-173 12-180 (189)
9 2bcg_Y Protein YP2, GTP-bindin 99.9 3.5E-25 1.2E-29 178.7 17.1 157 17-173 4-166 (206)
10 2o52_A RAS-related protein RAB 99.9 6.9E-26 2.4E-30 182.6 12.9 173 1-173 1-183 (200)
11 2bme_A RAB4A, RAS-related prot 99.9 3E-25 1E-29 175.6 16.2 159 15-173 4-168 (186)
12 1z0f_A RAB14, member RAS oncog 99.9 3.6E-25 1.2E-29 173.5 15.5 158 16-173 10-173 (179)
13 3kkq_A RAS-related protein M-R 99.9 7.4E-25 2.5E-29 173.1 16.0 165 8-173 5-177 (183)
14 1z08_A RAS-related protein RAB 99.9 4.3E-25 1.5E-29 171.9 14.3 157 17-173 2-164 (170)
15 3c5c_A RAS-like protein 12; GD 99.9 2.9E-25 1E-29 177.1 13.6 160 12-173 12-181 (187)
16 3dz8_A RAS-related protein RAB 99.9 2.3E-26 8E-31 183.7 7.1 162 12-173 14-181 (191)
17 3cpj_B GTP-binding protein YPT 99.9 4E-25 1.4E-29 181.1 14.3 157 17-173 9-171 (223)
18 3l0i_B RAS-related protein RAB 99.9 5.6E-26 1.9E-30 182.8 8.9 165 10-174 22-192 (199)
19 3tw8_B RAS-related protein RAB 99.9 1.1E-24 3.6E-29 171.1 16.1 159 14-173 2-166 (181)
20 2il1_A RAB12; G-protein, GDP, 99.9 3.3E-25 1.1E-29 177.4 13.3 163 11-173 16-185 (192)
21 1zbd_A Rabphilin-3A; G protein 99.9 1.5E-24 5.2E-29 174.4 17.2 157 17-173 4-166 (203)
22 1z06_A RAS-related protein RAB 99.9 8.8E-25 3E-29 174.0 15.4 160 14-173 13-183 (189)
23 2fg5_A RAB-22B, RAS-related pr 99.9 8.2E-25 2.8E-29 175.0 14.9 159 15-173 17-181 (192)
24 2efe_B Small GTP-binding prote 99.9 1.8E-24 6.3E-29 170.1 16.6 157 17-173 8-170 (181)
25 2g6b_A RAS-related protein RAB 99.9 2.3E-24 8E-29 169.4 17.0 158 16-173 5-169 (180)
26 3q3j_B RHO-related GTP-binding 99.9 5.3E-25 1.8E-29 179.6 13.7 161 11-173 17-198 (214)
27 3cbq_A GTP-binding protein REM 99.9 3.2E-25 1.1E-29 178.4 12.2 163 11-173 13-183 (195)
28 1r2q_A RAS-related protein RAB 99.9 1.4E-24 4.7E-29 168.6 15.4 156 18-173 3-164 (170)
29 2y8e_A RAB-protein 6, GH09086P 99.9 1.1E-24 3.8E-29 170.7 14.7 157 17-173 10-172 (179)
30 1z0j_A RAB-22, RAS-related pro 99.9 2.4E-24 8.3E-29 167.4 16.4 156 18-173 3-164 (170)
31 1wms_A RAB-9, RAB9, RAS-relate 99.9 3.6E-24 1.2E-28 167.9 17.4 156 17-173 3-169 (177)
32 2p5s_A RAS and EF-hand domain 99.9 4.7E-25 1.6E-29 177.3 12.0 159 15-173 22-192 (199)
33 1x3s_A RAS-related protein RAB 99.9 1.6E-24 5.3E-29 172.5 14.8 161 13-173 7-173 (195)
34 3t5g_A GTP-binding protein RHE 99.9 2.4E-24 8.3E-29 169.8 15.8 155 18-173 3-164 (181)
35 2hxs_A RAB-26, RAS-related pro 99.9 3.9E-25 1.3E-29 173.6 10.9 156 18-173 3-168 (178)
36 1g16_A RAS-related protein SEC 99.9 1.5E-24 5E-29 168.7 13.9 154 20-173 2-160 (170)
37 1ek0_A Protein (GTP-binding pr 99.9 3.4E-24 1.2E-28 166.4 16.0 154 20-173 2-164 (170)
38 3bc1_A RAS-related protein RAB 99.9 4.3E-24 1.5E-28 169.4 16.1 158 16-173 6-180 (195)
39 3ihw_A Centg3; RAS, centaurin, 99.9 2.8E-24 9.6E-29 171.2 14.8 158 9-173 8-175 (184)
40 2fn4_A P23, RAS-related protei 99.9 3.1E-24 1E-28 168.5 14.7 156 17-173 5-167 (181)
41 2f7s_A C25KG, RAS-related prot 99.9 7.5E-25 2.6E-29 178.1 11.4 163 11-173 15-194 (217)
42 3reg_A RHO-like small GTPase; 99.9 6.1E-24 2.1E-28 169.8 16.2 159 13-173 15-183 (194)
43 1z2a_A RAS-related protein RAB 99.9 2.7E-24 9.2E-29 166.9 13.5 153 19-172 3-161 (168)
44 1vg8_A RAS-related protein RAB 99.9 6.8E-24 2.3E-28 170.7 15.8 156 17-173 4-170 (207)
45 2g3y_A GTP-binding protein GEM 99.9 3.2E-24 1.1E-28 175.4 13.7 157 16-173 32-198 (211)
46 3cph_A RAS-related protein SEC 99.9 6.7E-24 2.3E-28 171.5 15.4 158 15-173 14-177 (213)
47 1gwn_A RHO-related GTP-binding 99.9 5.5E-24 1.9E-28 172.7 13.7 157 15-173 22-199 (205)
48 3oes_A GTPase rhebl1; small GT 99.9 3.1E-24 1E-28 172.8 11.9 156 17-173 20-182 (201)
49 2atx_A Small GTP binding prote 99.9 1.3E-23 4.4E-28 167.8 15.3 155 17-173 14-188 (194)
50 1ky3_A GTP-binding protein YPT 99.9 6.7E-24 2.3E-28 166.7 13.3 157 17-173 4-173 (182)
51 3q85_A GTP-binding protein REM 99.9 1.2E-23 4.2E-28 163.6 13.3 153 21-173 2-162 (169)
52 3clv_A RAB5 protein, putative; 99.9 2.3E-23 8E-28 166.1 15.2 154 17-173 3-199 (208)
53 3gj0_A GTP-binding nuclear pro 99.9 5.9E-24 2E-28 173.5 11.9 157 15-173 9-170 (221)
54 2iwr_A Centaurin gamma 1; ANK 99.9 1.5E-23 5.2E-28 164.8 13.6 148 19-173 5-164 (178)
55 2yc2_C IFT27, small RAB-relate 99.9 2.8E-24 9.4E-29 172.8 9.4 155 18-172 17-186 (208)
56 2a9k_A RAS-related protein RAL 99.9 1.9E-23 6.7E-28 164.7 14.1 157 16-173 13-176 (187)
57 2q3h_A RAS homolog gene family 99.9 1.9E-23 6.6E-28 167.6 13.9 121 15-137 14-138 (201)
58 2bov_A RAla, RAS-related prote 99.9 2.6E-23 9E-28 167.0 14.6 156 17-173 10-172 (206)
59 1m7b_A RND3/RHOE small GTP-bin 99.9 2.2E-23 7.4E-28 165.4 14.0 154 18-173 4-178 (184)
60 3con_A GTPase NRAS; structural 99.9 6.1E-23 2.1E-27 163.2 16.4 164 8-173 8-178 (190)
61 2j0v_A RAC-like GTP-binding pr 99.9 8.9E-24 3E-28 171.1 11.4 153 19-173 7-175 (212)
62 1c1y_A RAS-related protein RAP 99.9 3.1E-23 1.1E-27 160.7 13.8 153 20-173 2-162 (167)
63 1kao_A RAP2A; GTP-binding prot 99.9 3.5E-23 1.2E-27 160.0 13.7 153 20-173 2-161 (167)
64 2nzj_A GTP-binding protein REM 99.9 4.1E-23 1.4E-27 161.3 14.2 153 20-173 3-164 (175)
65 1u8z_A RAS-related protein RAL 99.9 3.7E-23 1.3E-27 160.0 13.6 153 20-173 3-162 (168)
66 2gco_A H9, RHO-related GTP-bin 99.9 9.1E-23 3.1E-27 164.3 16.3 119 18-138 22-144 (201)
67 2atv_A RERG, RAS-like estrogen 99.9 3.5E-23 1.2E-27 165.8 13.5 154 18-173 25-186 (196)
68 4dsu_A GTPase KRAS, isoform 2B 99.9 1E-22 3.4E-27 161.0 15.5 154 19-173 2-161 (189)
69 4djt_A GTP-binding nuclear pro 99.9 1.5E-23 5E-28 170.6 10.8 159 15-173 5-170 (218)
70 4bas_A ADP-ribosylation factor 99.9 4.7E-23 1.6E-27 164.6 13.5 161 9-173 5-184 (199)
71 2j1l_A RHO-related GTP-binding 99.9 4.3E-23 1.5E-27 168.0 13.2 154 18-173 31-204 (214)
72 3t1o_A Gliding protein MGLA; G 99.9 1.3E-23 4.4E-28 167.2 9.3 156 15-173 8-187 (198)
73 2cjw_A GTP-binding protein GEM 99.9 7.9E-23 2.7E-27 164.0 13.7 154 19-173 4-167 (192)
74 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.2E-22 4.1E-27 160.2 14.2 117 20-138 4-124 (186)
75 1oix_A RAS-related protein RAB 99.9 1.7E-22 5.8E-27 161.8 15.1 158 15-172 23-186 (191)
76 2gf0_A GTP-binding protein DI- 99.9 1.3E-22 4.4E-27 162.0 14.0 156 17-173 4-166 (199)
77 2fv8_A H6, RHO-related GTP-bin 99.9 1.4E-22 4.7E-27 163.9 14.2 119 18-138 22-144 (207)
78 3q72_A GTP-binding protein RAD 99.9 1.4E-22 4.7E-27 157.2 13.4 151 21-173 2-159 (166)
79 2f9l_A RAB11B, member RAS onco 99.9 3.4E-22 1.2E-26 160.7 15.5 155 19-173 3-163 (199)
80 4gzl_A RAS-related C3 botulinu 99.9 1.2E-22 4.3E-27 164.1 12.6 120 18-139 27-150 (204)
81 2ce2_X GTPase HRAS; signaling 99.9 4.3E-22 1.5E-26 153.4 15.0 152 21-173 3-160 (166)
82 2erx_A GTP-binding protein DI- 99.9 2.3E-22 8E-27 156.2 13.6 154 20-174 2-163 (172)
83 3bwd_D RAC-like GTP-binding pr 99.9 1.2E-23 4.2E-28 165.5 6.0 153 19-173 6-176 (182)
84 2h17_A ADP-ribosylation factor 99.9 1.4E-22 4.9E-27 160.3 11.9 124 10-138 10-137 (181)
85 1zd9_A ADP-ribosylation factor 99.9 2.9E-22 9.9E-27 159.6 13.4 122 13-138 14-139 (188)
86 2zej_A Dardarin, leucine-rich 99.9 1E-22 3.6E-27 161.7 8.6 118 21-139 2-128 (184)
87 2h57_A ADP-ribosylation factor 99.9 4.6E-22 1.6E-26 158.3 12.3 121 14-138 14-141 (190)
88 1ksh_A ARF-like protein 2; sma 99.9 2.9E-21 1E-25 152.9 13.8 116 19-139 16-135 (186)
89 1zj6_A ADP-ribosylation factor 99.9 1.2E-21 4.1E-26 155.6 11.3 150 19-173 14-173 (187)
90 1r8s_A ADP-ribosylation factor 99.9 1.5E-21 5.2E-26 151.0 11.4 112 22-138 1-116 (164)
91 1upt_A ARL1, ADP-ribosylation 99.9 6.6E-21 2.3E-25 148.2 15.0 116 19-139 5-124 (171)
92 1m2o_B GTP-binding protein SAR 99.9 4.5E-21 1.6E-25 153.2 14.4 114 19-137 21-138 (190)
93 1f6b_A SAR1; gtpases, N-termin 99.9 1.6E-21 5.5E-26 156.9 11.7 114 19-137 23-140 (198)
94 1fzq_A ADP-ribosylation factor 99.9 1.6E-21 5.6E-26 154.5 10.9 150 19-173 14-173 (181)
95 3th5_A RAS-related C3 botulinu 99.8 4.4E-23 1.5E-27 166.2 0.0 119 18-138 27-149 (204)
96 2b6h_A ADP-ribosylation factor 99.9 4E-21 1.4E-25 153.8 11.4 116 18-138 26-145 (192)
97 2wkq_A NPH1-1, RAS-related C3 99.8 1.1E-20 3.8E-25 162.5 13.7 118 19-138 153-274 (332)
98 1moz_A ARL1, ADP-ribosylation 99.8 5.6E-21 1.9E-25 150.5 9.6 115 19-138 16-134 (183)
99 3llu_A RAS-related GTP-binding 99.8 1.7E-21 5.9E-26 156.2 6.2 124 10-137 9-143 (196)
100 2wji_A Ferrous iron transport 99.8 1.4E-20 4.9E-25 146.8 11.2 148 21-173 3-160 (165)
101 3r7w_B Gtpase2, GTP-binding pr 99.8 2.5E-21 8.4E-26 167.4 7.1 145 23-173 1-169 (331)
102 2fh5_B SR-beta, signal recogni 99.8 9.7E-21 3.3E-25 153.4 10.1 119 18-139 4-131 (214)
103 3c5h_A Glucocorticoid receptor 99.8 1E-21 3.5E-26 164.7 4.3 157 15-173 13-250 (255)
104 2x77_A ADP-ribosylation factor 99.8 1E-20 3.5E-25 150.2 9.9 115 19-138 20-138 (189)
105 3o47_A ADP-ribosylation factor 99.8 5.8E-20 2E-24 159.6 10.8 151 18-173 162-322 (329)
106 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-19 5.6E-24 164.5 14.1 147 18-173 319-479 (497)
107 2wjg_A FEOB, ferrous iron tran 99.8 9E-20 3.1E-24 144.3 10.5 149 20-173 6-164 (188)
108 2lkc_A Translation initiation 99.8 1.6E-19 5.4E-24 141.4 10.7 118 18-138 5-122 (178)
109 3r7w_A Gtpase1, GTP-binding pr 99.8 1.5E-19 5.1E-24 155.5 11.5 151 20-173 2-176 (307)
110 3dpu_A RAB family protein; roc 99.8 8.9E-20 3.1E-24 167.9 8.4 156 17-173 37-203 (535)
111 2dyk_A GTP-binding protein; GT 99.8 8E-18 2.7E-22 129.4 13.2 144 22-173 2-157 (161)
112 2gj8_A MNME, tRNA modification 99.7 2.8E-18 9.6E-23 134.9 8.6 114 20-137 3-129 (172)
113 1svi_A GTP-binding protein YSX 99.7 3.7E-18 1.3E-22 135.7 8.7 149 18-173 20-190 (195)
114 1nrj_B SR-beta, signal recogni 99.7 2.3E-18 7.9E-23 139.7 7.5 115 17-140 8-137 (218)
115 2qu8_A Putative nucleolar GTP- 99.7 1.3E-17 4.5E-22 136.7 12.1 152 18-173 26-200 (228)
116 3a1s_A Iron(II) transport prot 99.7 1.1E-17 3.7E-22 140.6 10.5 150 19-173 3-162 (258)
117 2cxx_A Probable GTP-binding pr 99.7 4.7E-18 1.6E-22 134.3 6.4 145 21-173 1-179 (190)
118 3b1v_A Ferrous iron uptake tra 99.7 8.6E-18 2.9E-22 142.3 7.9 147 20-173 2-159 (272)
119 2ged_A SR-beta, signal recogni 99.7 3.7E-18 1.3E-22 135.7 5.3 114 18-140 45-173 (193)
120 3pqc_A Probable GTP-binding pr 99.7 5.9E-17 2E-21 128.3 9.6 147 17-173 19-189 (195)
121 3k53_A Ferrous iron transport 99.7 7.7E-17 2.6E-21 135.9 10.1 150 20-173 2-161 (271)
122 3iby_A Ferrous iron transport 99.7 7.6E-17 2.6E-21 135.3 9.0 149 22-175 2-164 (256)
123 3i8s_A Ferrous iron transport 99.7 7.5E-17 2.6E-21 136.5 8.9 149 21-174 3-165 (274)
124 3qq5_A Small GTP-binding prote 99.7 7.2E-17 2.5E-21 144.4 8.0 167 2-173 15-191 (423)
125 3lxx_A GTPase IMAP family memb 99.6 1E-15 3.5E-20 126.4 10.7 121 17-139 25-161 (239)
126 4dhe_A Probable GTP-binding pr 99.6 9.1E-17 3.1E-21 130.5 3.3 119 18-139 26-160 (223)
127 3def_A T7I23.11 protein; chlor 99.6 3.9E-15 1.3E-19 124.9 12.4 117 19-138 34-166 (262)
128 3lxw_A GTPase IMAP family memb 99.6 1.5E-15 5E-20 126.6 9.8 122 15-138 15-154 (247)
129 3iev_A GTP-binding protein ERA 99.6 1.9E-15 6.4E-20 130.0 10.1 152 17-173 6-177 (308)
130 3gee_A MNME, tRNA modification 99.6 9.7E-16 3.3E-20 139.1 8.3 147 20-173 232-393 (476)
131 2hjg_A GTP-binding protein ENG 99.6 1.8E-15 6.1E-20 135.9 9.3 116 18-140 172-303 (436)
132 2xtp_A GTPase IMAP family memb 99.6 9.5E-15 3.3E-19 121.9 12.7 118 18-137 19-153 (260)
133 1h65_A Chloroplast outer envel 99.6 4E-15 1.4E-19 125.3 9.9 118 19-139 37-170 (270)
134 4dcu_A GTP-binding protein ENG 99.6 2.6E-15 9E-20 135.6 9.0 118 18-140 192-323 (456)
135 1wf3_A GTP-binding protein; GT 99.6 1.9E-14 6.6E-19 123.3 13.5 149 19-174 5-169 (301)
136 1mky_A Probable GTP-binding pr 99.6 5.9E-15 2E-19 132.7 9.9 112 22-137 2-124 (439)
137 4dcu_A GTP-binding protein ENG 99.5 2E-15 6.9E-20 136.3 4.2 117 19-138 21-146 (456)
138 3ohm_A Guanine nucleotide-bind 99.5 2.5E-14 8.5E-19 123.8 10.2 83 52-138 153-249 (327)
139 2hjg_A GTP-binding protein ENG 99.5 1E-14 3.4E-19 131.0 7.5 115 21-138 3-126 (436)
140 2e87_A Hypothetical protein PH 99.5 1.4E-13 4.7E-18 120.5 13.0 149 19-173 165-331 (357)
141 3geh_A MNME, tRNA modification 99.5 1.2E-14 4.2E-19 131.4 5.4 112 20-140 223-347 (462)
142 3sjy_A Translation initiation 99.5 3.5E-13 1.2E-17 119.8 13.3 149 17-173 4-187 (403)
143 2xtz_A Guanine nucleotide-bind 99.5 2.2E-14 7.4E-19 125.6 5.2 70 68-137 181-264 (354)
144 1xzp_A Probable tRNA modificat 99.5 5.8E-14 2E-18 127.5 8.1 109 21-138 243-365 (482)
145 3j2k_7 ERF3, eukaryotic polype 99.5 2E-13 6.9E-18 122.7 11.5 118 18-137 14-169 (439)
146 4fid_A G protein alpha subunit 99.5 1.2E-13 4.1E-18 120.1 9.5 82 52-137 147-242 (340)
147 3izy_P Translation initiation 99.5 4.3E-15 1.5E-19 136.3 -0.3 115 20-139 3-120 (537)
148 2qag_A Septin-2, protein NEDD5 99.5 2.6E-14 9.1E-19 125.4 4.6 118 19-140 35-191 (361)
149 1zun_B Sulfate adenylate trans 99.5 5.6E-13 1.9E-17 119.6 12.9 118 18-137 21-171 (434)
150 3t5d_A Septin-7; GTP-binding p 99.5 1.1E-13 3.9E-18 116.7 7.9 116 18-137 5-158 (274)
151 1jny_A EF-1-alpha, elongation 99.4 4.4E-14 1.5E-18 126.9 5.4 115 19-137 4-158 (435)
152 1cip_A Protein (guanine nucleo 99.4 4.2E-13 1.4E-17 117.4 11.4 82 52-137 179-274 (353)
153 1lnz_A SPO0B-associated GTP-bi 99.4 1.2E-13 4.3E-18 120.3 6.8 146 22-173 159-325 (342)
154 1s0u_A EIF-2-gamma, translatio 99.4 2.6E-12 9E-17 114.3 14.6 154 18-173 5-193 (408)
155 3cb4_D GTP-binding protein LEP 99.4 6.4E-13 2.2E-17 123.5 10.7 149 20-173 3-177 (599)
156 1wb1_A Translation elongation 99.4 1.4E-12 4.9E-17 118.5 11.3 123 10-137 8-139 (482)
157 3izq_1 HBS1P, elongation facto 99.4 1.6E-12 5.5E-17 121.2 11.9 118 18-137 164-319 (611)
158 1mky_A Probable GTP-binding pr 99.4 2.3E-12 7.9E-17 115.7 12.5 114 19-139 178-308 (439)
159 3p26_A Elongation factor 1 alp 99.4 5.6E-13 1.9E-17 121.1 8.4 119 19-137 31-185 (483)
160 2qtf_A Protein HFLX, GTP-bindi 99.4 2.2E-12 7.4E-17 113.3 11.7 115 21-138 178-307 (364)
161 2c78_A Elongation factor TU-A; 99.4 4.6E-13 1.6E-17 119.1 7.2 118 18-137 8-142 (405)
162 2ywe_A GTP-binding protein LEP 99.4 3.1E-12 1.1E-16 118.8 12.7 150 19-173 4-179 (600)
163 1r5b_A Eukaryotic peptide chai 99.4 6E-13 2.1E-17 120.5 7.4 115 19-137 41-195 (467)
164 1ega_A Protein (GTP-binding pr 99.4 8.3E-12 2.8E-16 106.8 13.0 151 19-174 6-171 (301)
165 2aka_B Dynamin-1; fusion prote 99.3 1.4E-12 4.6E-17 110.6 7.7 118 18-138 23-207 (299)
166 1zo1_I IF2, translation initia 99.3 4.1E-13 1.4E-17 122.3 4.2 114 19-138 2-118 (501)
167 3tr5_A RF-3, peptide chain rel 99.3 6.7E-13 2.3E-17 121.8 5.4 115 18-138 10-149 (528)
168 1kk1_A EIF2gamma; initiation o 99.3 1.3E-11 4.5E-16 109.8 13.5 155 17-173 6-195 (410)
169 1d2e_A Elongation factor TU (E 99.3 2.8E-12 9.5E-17 113.8 8.8 116 20-137 2-133 (397)
170 1f60_A Elongation factor EEF1A 99.3 8.5E-13 2.9E-17 119.3 5.6 113 19-137 5-159 (458)
171 1n0u_A EF-2, elongation factor 99.3 2.8E-12 9.5E-17 123.7 8.7 115 18-136 16-163 (842)
172 3t34_A Dynamin-related protein 99.3 2.7E-12 9.2E-17 112.3 7.6 120 20-139 33-219 (360)
173 2h5e_A Peptide chain release f 99.3 2E-12 6.7E-17 118.8 6.7 119 19-139 11-150 (529)
174 1dar_A EF-G, elongation factor 99.3 1.1E-11 3.7E-16 117.3 11.4 116 16-139 7-145 (691)
175 2qnr_A Septin-2, protein NEDD5 99.3 1.3E-12 4.5E-17 111.9 4.3 152 18-173 15-209 (301)
176 1pui_A ENGB, probable GTP-bind 99.3 5.1E-12 1.8E-16 101.3 7.1 111 18-137 23-151 (210)
177 3avx_A Elongation factor TS, e 99.3 6.1E-12 2.1E-16 123.2 8.3 118 18-137 293-426 (1289)
178 1g7s_A Translation initiation 99.3 2.4E-12 8.1E-17 119.7 5.1 115 19-137 3-136 (594)
179 1jwy_B Dynamin A GTPase domain 99.3 1E-11 3.5E-16 106.1 8.1 118 18-139 21-214 (315)
180 1u0l_A Probable GTPase ENGC; p 99.2 9.9E-13 3.4E-17 112.6 1.0 95 36-139 32-131 (301)
181 2elf_A Protein translation elo 99.2 1.3E-11 4.3E-16 108.7 7.7 100 23-135 23-125 (370)
182 3mca_A HBS1, elongation factor 99.2 1.7E-12 5.9E-17 120.7 1.4 118 18-137 174-329 (592)
183 2rdo_7 EF-G, elongation factor 99.2 5.6E-11 1.9E-15 112.5 11.5 115 18-138 7-149 (704)
184 2xex_A Elongation factor G; GT 99.2 5.8E-11 2E-15 112.3 11.3 113 18-138 7-142 (693)
185 2dy1_A Elongation factor G; tr 99.2 3.3E-11 1.1E-15 113.5 8.3 116 18-136 6-139 (665)
186 2qag_C Septin-7; cell cycle, c 99.2 5.4E-11 1.8E-15 106.2 9.1 120 17-140 27-184 (418)
187 2x2e_A Dynamin-1; nitration, h 99.2 2E-11 6.9E-16 106.6 5.9 119 19-138 29-212 (353)
188 2j69_A Bacterial dynamin-like 99.2 3.9E-11 1.3E-15 113.5 7.2 117 19-138 67-245 (695)
189 2qpt_A EH domain-containing pr 99.1 4.8E-11 1.7E-15 110.0 7.5 115 17-137 61-232 (550)
190 1wxq_A GTP-binding protein; st 99.1 1.6E-10 5.5E-15 102.5 9.8 83 22-104 1-112 (397)
191 1jal_A YCHF protein; nucleotid 99.1 7E-11 2.4E-15 103.5 7.1 81 22-104 3-107 (363)
192 1azs_C GS-alpha; complex (lyas 99.1 5.3E-10 1.8E-14 99.2 10.1 81 53-137 204-298 (402)
193 2ohf_A Protein OLA1, GTP-bindi 99.0 1.2E-10 4.2E-15 103.0 5.1 86 19-104 20-127 (396)
194 1udx_A The GTP-binding protein 99.0 6.3E-10 2.2E-14 99.2 8.2 147 23-173 159-320 (416)
195 1zcb_A G alpha I/13; GTP-bindi 98.9 2.2E-09 7.6E-14 94.0 8.9 82 52-137 187-282 (362)
196 2hf9_A Probable hydrogenase ni 98.9 1E-12 3.4E-17 106.9 -12.3 40 20-59 37-76 (226)
197 2dby_A GTP-binding protein; GD 98.8 4.3E-09 1.5E-13 92.4 5.0 77 22-104 2-110 (368)
198 4a9a_A Ribosome-interacting GT 98.8 3.1E-08 1.1E-12 87.1 10.0 114 18-134 69-193 (376)
199 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 5.6E-08 1.9E-12 85.9 7.1 88 17-104 16-126 (392)
200 2wsm_A Hydrogenase expression/ 98.6 2.7E-08 9.4E-13 80.1 4.7 109 20-137 29-168 (221)
201 3p32_A Probable GTPase RV1496/ 98.5 2E-08 6.8E-13 87.6 0.7 60 70-137 172-231 (355)
202 3vqt_A RF-3, peptide chain rel 98.5 6.9E-07 2.3E-11 82.3 10.5 117 18-140 28-169 (548)
203 3zvr_A Dynamin-1; hydrolase, D 98.4 2.4E-06 8.1E-11 81.2 11.3 116 19-138 49-232 (772)
204 3cnl_A YLQF, putative uncharac 98.3 2.7E-07 9.4E-12 77.2 3.0 57 22-82 100-156 (262)
205 4fn5_A EF-G 1, elongation fact 98.2 9.4E-06 3.2E-10 76.9 11.4 116 19-138 11-152 (709)
206 1yrb_A ATP(GTP)binding protein 98.2 2.3E-06 8E-11 70.5 6.5 68 70-138 109-186 (262)
207 1puj_A YLQF, conserved hypothe 98.2 1.7E-06 5.7E-11 73.1 5.1 59 19-81 118-176 (282)
208 2www_A Methylmalonic aciduria 98.1 1.8E-06 6.3E-11 75.0 4.2 60 70-137 167-226 (349)
209 3j25_A Tetracycline resistance 98.1 8.2E-07 2.8E-11 83.2 1.1 115 21-139 2-135 (638)
210 2p67_A LAO/AO transport system 98.0 8.7E-07 3E-11 76.8 0.4 60 70-137 149-208 (341)
211 1bif_A 6-phosphofructo-2-kinas 98.0 2.2E-07 7.4E-12 84.0 -3.7 100 19-119 37-148 (469)
212 2yv5_A YJEQ protein; hydrolase 97.8 6.4E-05 2.2E-09 63.9 9.1 56 80-138 66-125 (302)
213 3sop_A Neuronal-specific septi 97.7 7.6E-05 2.6E-09 62.5 7.0 24 21-44 2-25 (270)
214 2qag_B Septin-6, protein NEDD5 97.6 0.00022 7.4E-09 63.5 9.7 59 20-80 41-105 (427)
215 3h2y_A GTPase family protein; 97.5 8.4E-05 2.9E-09 65.0 5.5 111 22-139 161-289 (368)
216 2j37_W Signal recognition part 97.5 8.6E-05 2.9E-09 67.5 5.3 115 19-137 99-254 (504)
217 1f5n_A Interferon-induced guan 97.5 9.6E-05 3.3E-09 68.4 5.5 62 19-82 36-103 (592)
218 3ec1_A YQEH GTPase; atnos1, at 97.5 8.1E-05 2.8E-09 65.1 4.7 109 22-138 163-289 (369)
219 2qm8_A GTPase/ATPase; G protei 97.5 8.2E-05 2.8E-09 64.2 4.6 22 21-42 55-76 (337)
220 3l82_B F-box only protein 4; T 97.2 0.00013 4.5E-09 59.0 2.1 61 77-138 109-178 (227)
221 1ye8_A Protein THEP1, hypothet 96.6 0.0011 3.7E-08 51.9 3.3 22 23-44 2-23 (178)
222 3dm5_A SRP54, signal recogniti 96.6 0.0016 5.4E-08 58.2 4.4 115 20-137 99-253 (443)
223 3l2o_B F-box only protein 4; s 96.6 0.00092 3.2E-08 56.5 2.5 62 77-138 194-263 (312)
224 1kgd_A CASK, peripheral plasma 96.6 0.0012 4.2E-08 51.2 3.0 22 23-44 7-28 (180)
225 1lvg_A Guanylate kinase, GMP k 96.5 0.0015 5.1E-08 51.7 3.0 21 23-43 6-26 (198)
226 2v3c_C SRP54, signal recogniti 96.4 0.003 1E-07 56.3 4.8 66 69-137 180-252 (432)
227 3a00_A Guanylate kinase, GMP k 96.3 0.0018 6.3E-08 50.4 2.9 21 24-44 4-24 (186)
228 3q5d_A Atlastin-1; G protein, 96.3 0.004 1.4E-07 55.7 5.3 63 19-81 65-151 (447)
229 1ex7_A Guanylate kinase; subst 96.3 0.0022 7.4E-08 50.6 3.2 21 24-44 4-24 (186)
230 3tr0_A Guanylate kinase, GMP k 96.3 0.0022 7.6E-08 50.3 3.0 22 23-44 9-30 (205)
231 1s96_A Guanylate kinase, GMP k 96.2 0.0023 7.9E-08 51.7 3.0 22 23-44 18-39 (219)
232 3ney_A 55 kDa erythrocyte memb 96.2 0.0024 8.1E-08 50.9 3.0 22 23-44 21-42 (197)
233 1zp6_A Hypothetical protein AT 96.2 0.0026 8.9E-08 49.3 3.0 22 23-44 11-32 (191)
234 1znw_A Guanylate kinase, GMP k 96.2 0.0025 8.5E-08 50.6 3.0 23 22-44 21-43 (207)
235 4gp7_A Metallophosphoesterase; 96.2 0.0023 8E-08 49.3 2.6 20 23-42 11-30 (171)
236 1z6g_A Guanylate kinase; struc 96.1 0.0029 9.8E-08 50.8 3.0 22 23-44 25-46 (218)
237 3tau_A Guanylate kinase, GMP k 96.1 0.003 1E-07 50.2 3.0 22 23-44 10-31 (208)
238 3gfo_A Cobalt import ATP-bindi 96.0 0.0065 2.2E-07 50.8 4.9 22 23-44 36-57 (275)
239 1htw_A HI0065; nucleotide-bind 96.0 0.0035 1.2E-07 48.0 3.0 23 23-45 35-57 (158)
240 2cdn_A Adenylate kinase; phosp 96.0 0.0049 1.7E-07 48.4 3.7 30 14-43 13-42 (201)
241 1ukz_A Uridylate kinase; trans 96.0 0.0058 2E-07 47.9 4.2 25 19-43 13-37 (203)
242 1knq_A Gluconate kinase; ALFA/ 96.0 0.005 1.7E-07 47.1 3.7 22 22-43 9-30 (175)
243 2qor_A Guanylate kinase; phosp 95.9 0.0047 1.6E-07 48.8 3.2 22 23-44 14-35 (204)
244 3c8u_A Fructokinase; YP_612366 95.9 0.0044 1.5E-07 49.1 2.9 24 20-43 21-44 (208)
245 3kb2_A SPBC2 prophage-derived 95.8 0.0053 1.8E-07 46.5 3.2 22 23-44 3-24 (173)
246 3fvq_A Fe(3+) IONS import ATP- 95.8 0.012 4E-07 51.2 5.6 22 23-44 32-53 (359)
247 3vaa_A Shikimate kinase, SK; s 95.8 0.0055 1.9E-07 48.1 3.3 22 22-43 26-47 (199)
248 2bdt_A BH3686; alpha-beta prot 95.8 0.0051 1.8E-07 47.7 3.0 21 23-43 4-24 (189)
249 2qt1_A Nicotinamide riboside k 95.8 0.0085 2.9E-07 47.2 4.3 31 14-44 14-44 (207)
250 2j41_A Guanylate kinase; GMP, 95.7 0.0053 1.8E-07 48.1 3.0 24 22-45 7-30 (207)
251 1kag_A SKI, shikimate kinase I 95.7 0.0056 1.9E-07 46.6 3.0 22 23-44 6-27 (173)
252 3tif_A Uncharacterized ABC tra 95.7 0.005 1.7E-07 50.2 2.8 35 23-68 33-67 (235)
253 2bbw_A Adenylate kinase 4, AK4 95.7 0.0062 2.1E-07 49.5 3.4 21 22-42 28-48 (246)
254 2i3b_A HCR-ntpase, human cance 95.7 0.005 1.7E-07 48.5 2.7 21 23-43 3-23 (189)
255 3nh6_A ATP-binding cassette SU 95.7 0.0096 3.3E-07 50.6 4.5 28 23-55 82-109 (306)
256 2onk_A Molybdate/tungstate ABC 95.7 0.0063 2.2E-07 49.8 3.2 35 23-68 26-60 (240)
257 2pcj_A ABC transporter, lipopr 95.7 0.0053 1.8E-07 49.6 2.7 35 23-68 32-66 (224)
258 4eun_A Thermoresistant glucoki 95.7 0.0062 2.1E-07 47.9 3.0 22 22-43 30-51 (200)
259 3umf_A Adenylate kinase; rossm 95.6 0.0072 2.5E-07 48.8 3.4 27 17-43 24-51 (217)
260 2rcn_A Probable GTPase ENGC; Y 95.6 0.0068 2.3E-07 52.7 3.5 23 23-45 217-239 (358)
261 2ehv_A Hypothetical protein PH 95.6 0.0065 2.2E-07 48.9 3.2 20 23-42 32-51 (251)
262 3lw7_A Adenylate kinase relate 95.6 0.0066 2.3E-07 45.8 3.0 20 22-41 2-21 (179)
263 1g29_1 MALK, maltose transport 95.6 0.018 6.1E-07 50.3 6.0 22 23-44 31-52 (372)
264 1ly1_A Polynucleotide kinase; 95.6 0.0072 2.5E-07 46.1 3.2 22 22-43 3-24 (181)
265 1b0u_A Histidine permease; ABC 95.6 0.0064 2.2E-07 50.4 2.9 35 23-68 34-68 (262)
266 1sgw_A Putative ABC transporte 95.5 0.0069 2.4E-07 48.7 2.9 35 23-68 37-71 (214)
267 3rlf_A Maltose/maltodextrin im 95.5 0.015 5.2E-07 50.9 5.3 22 23-44 31-52 (381)
268 2cbz_A Multidrug resistance-as 95.5 0.0074 2.5E-07 49.2 3.1 22 23-44 33-54 (237)
269 3fb4_A Adenylate kinase; psych 95.5 0.0085 2.9E-07 47.4 3.3 21 23-43 2-22 (216)
270 3t61_A Gluconokinase; PSI-biol 95.5 0.0077 2.6E-07 47.3 3.0 22 22-43 19-40 (202)
271 1g6h_A High-affinity branched- 95.5 0.007 2.4E-07 49.9 2.8 22 23-44 35-56 (257)
272 3dl0_A Adenylate kinase; phosp 95.5 0.0087 3E-07 47.4 3.3 21 23-43 2-22 (216)
273 2ff7_A Alpha-hemolysin translo 95.5 0.0077 2.6E-07 49.4 3.1 22 23-44 37-58 (247)
274 1mv5_A LMRA, multidrug resista 95.5 0.008 2.7E-07 49.1 3.1 22 23-44 30-51 (243)
275 3h2y_A GTPase family protein; 95.5 0.0063 2.1E-07 53.0 2.6 57 79-138 55-111 (368)
276 3ec2_A DNA replication protein 95.5 0.0062 2.1E-07 46.9 2.3 23 22-44 39-61 (180)
277 1qhx_A CPT, protein (chloramph 95.5 0.0082 2.8E-07 45.9 3.0 22 23-44 5-26 (178)
278 2jaq_A Deoxyguanosine kinase; 95.5 0.0088 3E-07 46.5 3.3 21 23-43 2-22 (205)
279 3tui_C Methionine import ATP-b 95.4 0.017 5.7E-07 50.3 5.3 22 23-44 56-77 (366)
280 4a74_A DNA repair and recombin 95.4 0.0074 2.5E-07 47.9 2.8 22 23-44 27-48 (231)
281 2olj_A Amino acid ABC transpor 95.4 0.0076 2.6E-07 50.0 2.9 35 23-68 52-86 (263)
282 1nks_A Adenylate kinase; therm 95.4 0.0092 3.2E-07 45.9 3.2 21 23-43 3-23 (194)
283 2zu0_C Probable ATP-dependent 95.4 0.0086 2.9E-07 49.7 3.2 22 23-44 48-69 (267)
284 2d2e_A SUFC protein; ABC-ATPas 95.4 0.0085 2.9E-07 49.2 3.2 37 23-68 31-67 (250)
285 3asz_A Uridine kinase; cytidin 95.4 0.0091 3.1E-07 47.1 3.2 23 21-43 6-28 (211)
286 1ji0_A ABC transporter; ATP bi 95.4 0.0076 2.6E-07 49.2 2.8 22 23-44 34-55 (240)
287 2pze_A Cystic fibrosis transme 95.4 0.0087 3E-07 48.5 3.1 22 23-44 36-57 (229)
288 4g1u_C Hemin import ATP-bindin 95.4 0.0079 2.7E-07 50.0 2.9 22 23-44 39-60 (266)
289 3lnc_A Guanylate kinase, GMP k 95.4 0.0055 1.9E-07 49.3 1.9 21 22-42 28-48 (231)
290 2qi9_C Vitamin B12 import ATP- 95.4 0.008 2.7E-07 49.5 2.9 22 23-44 28-49 (249)
291 1jbk_A CLPB protein; beta barr 95.4 0.009 3.1E-07 45.4 3.0 23 22-44 44-66 (195)
292 2if2_A Dephospho-COA kinase; a 95.4 0.0089 3E-07 46.8 3.1 22 22-43 2-23 (204)
293 2yv5_A YJEQ protein; hydrolase 95.4 0.0087 3E-07 50.6 3.1 20 23-42 167-186 (302)
294 1np6_A Molybdopterin-guanine d 95.3 0.0094 3.2E-07 46.4 3.0 23 22-44 7-29 (174)
295 1vpl_A ABC transporter, ATP-bi 95.3 0.0085 2.9E-07 49.5 2.9 22 23-44 43-64 (256)
296 2ihy_A ABC transporter, ATP-bi 95.3 0.0092 3.1E-07 50.0 3.1 22 23-44 49-70 (279)
297 2ghi_A Transport protein; mult 95.3 0.0094 3.2E-07 49.3 3.1 22 23-44 48-69 (260)
298 1p5z_B DCK, deoxycytidine kina 95.3 0.0062 2.1E-07 50.1 1.9 27 18-44 21-47 (263)
299 1tq4_A IIGP1, interferon-induc 95.3 0.0089 3E-07 52.9 3.0 23 22-44 70-92 (413)
300 2ixe_A Antigen peptide transpo 95.3 0.0096 3.3E-07 49.6 3.1 22 23-44 47-68 (271)
301 3b85_A Phosphate starvation-in 95.3 0.0077 2.7E-07 48.2 2.4 22 23-44 24-45 (208)
302 3uie_A Adenylyl-sulfate kinase 95.3 0.0098 3.4E-07 46.7 3.0 24 21-44 25-48 (200)
303 1kht_A Adenylate kinase; phosp 95.3 0.011 3.9E-07 45.4 3.3 22 22-43 4-25 (192)
304 1u0l_A Probable GTPase ENGC; p 95.2 0.0085 2.9E-07 50.5 2.7 23 23-45 171-193 (301)
305 1oxx_K GLCV, glucose, ABC tran 95.2 0.015 5.2E-07 50.3 4.3 22 23-44 33-54 (353)
306 1zcb_A G alpha I/13; GTP-bindi 95.2 0.011 3.9E-07 51.3 3.5 24 18-41 30-53 (362)
307 2eyu_A Twitching motility prot 95.2 0.01 3.4E-07 49.2 3.0 21 23-43 27-47 (261)
308 3trf_A Shikimate kinase, SK; a 95.2 0.013 4.4E-07 45.1 3.4 22 22-43 6-27 (185)
309 2nq2_C Hypothetical ABC transp 95.2 0.0099 3.4E-07 49.0 2.8 22 23-44 33-54 (253)
310 1lw7_A Transcriptional regulat 95.2 0.0098 3.3E-07 51.4 2.9 24 21-44 170-193 (365)
311 2yz2_A Putative ABC transporte 95.2 0.0099 3.4E-07 49.3 2.8 22 23-44 35-56 (266)
312 1y63_A LMAJ004144AAA protein; 95.2 0.013 4.6E-07 45.3 3.4 24 21-44 10-33 (184)
313 2rhm_A Putative kinase; P-loop 95.2 0.014 4.7E-07 45.1 3.5 22 22-43 6-27 (193)
314 2wwf_A Thymidilate kinase, put 95.1 0.016 5.6E-07 45.4 4.0 22 22-43 11-32 (212)
315 1t9h_A YLOQ, probable GTPase E 95.1 0.0039 1.3E-07 53.0 0.3 23 22-44 174-196 (307)
316 1jjv_A Dephospho-COA kinase; P 95.1 0.015 5E-07 45.7 3.6 22 22-43 3-24 (206)
317 2pjz_A Hypothetical protein ST 95.1 0.012 4.1E-07 48.8 3.1 22 23-44 32-53 (263)
318 1ak2_A Adenylate kinase isoenz 95.1 0.014 4.8E-07 47.0 3.5 24 20-43 15-38 (233)
319 3cm0_A Adenylate kinase; ATP-b 95.1 0.017 5.7E-07 44.4 3.8 23 21-43 4-26 (186)
320 1uf9_A TT1252 protein; P-loop, 95.1 0.014 4.8E-07 45.4 3.4 26 19-44 6-31 (203)
321 1cke_A CK, MSSA, protein (cyti 95.1 0.013 4.5E-07 46.6 3.3 22 22-43 6-27 (227)
322 2v9p_A Replication protein E1; 95.1 0.012 4.1E-07 50.0 3.2 21 23-43 128-148 (305)
323 3tlx_A Adenylate kinase 2; str 95.1 0.015 5.3E-07 47.3 3.7 24 20-43 28-51 (243)
324 1e4v_A Adenylate kinase; trans 95.0 0.014 4.9E-07 46.2 3.2 21 23-43 2-22 (214)
325 1aky_A Adenylate kinase; ATP:A 95.0 0.016 5.4E-07 46.1 3.4 22 22-43 5-26 (220)
326 1zd8_A GTP:AMP phosphotransfer 94.9 0.015 5.1E-07 46.6 3.2 22 22-43 8-29 (227)
327 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.014 5E-07 46.1 3.1 21 23-43 25-45 (235)
328 2f1r_A Molybdopterin-guanine d 94.9 0.0075 2.6E-07 46.7 1.3 22 23-44 4-25 (171)
329 1tev_A UMP-CMP kinase; ploop, 94.9 0.018 6.2E-07 44.3 3.6 23 21-43 3-25 (196)
330 2plr_A DTMP kinase, probable t 94.9 0.018 6.2E-07 45.0 3.6 22 22-43 5-26 (213)
331 1z47_A CYSA, putative ABC-tran 94.9 0.014 4.9E-07 50.5 3.2 22 23-44 43-64 (355)
332 1qf9_A UMP/CMP kinase, protein 94.9 0.022 7.4E-07 43.8 3.9 22 22-43 7-28 (194)
333 2bbs_A Cystic fibrosis transme 94.9 0.014 4.8E-07 49.2 2.9 22 23-44 66-87 (290)
334 3sr0_A Adenylate kinase; phosp 94.9 0.017 5.9E-07 46.0 3.3 21 23-43 2-22 (206)
335 1rj9_A FTSY, signal recognitio 94.8 0.014 4.9E-07 49.4 3.0 22 21-42 102-123 (304)
336 2it1_A 362AA long hypothetical 94.8 0.015 5.3E-07 50.5 3.2 22 23-44 31-52 (362)
337 2yyz_A Sugar ABC transporter, 94.8 0.015 5.2E-07 50.5 3.2 22 23-44 31-52 (359)
338 3be4_A Adenylate kinase; malar 94.8 0.016 5.4E-07 46.1 3.0 23 21-43 5-27 (217)
339 3aez_A Pantothenate kinase; tr 94.8 0.023 8E-07 48.2 4.2 26 18-43 87-112 (312)
340 2jeo_A Uridine-cytidine kinase 94.8 0.018 6.3E-07 46.7 3.4 24 20-43 24-47 (245)
341 3iij_A Coilin-interacting nucl 94.8 0.019 6.3E-07 44.1 3.3 22 22-43 12-33 (180)
342 1ixz_A ATP-dependent metallopr 94.8 0.016 5.5E-07 47.1 3.0 21 24-44 52-72 (254)
343 2p65_A Hypothetical protein PF 94.8 0.012 4.1E-07 44.7 2.1 23 22-44 44-66 (187)
344 2v54_A DTMP kinase, thymidylat 94.8 0.02 6.7E-07 44.6 3.4 23 22-44 5-27 (204)
345 3b5x_A Lipid A export ATP-bind 94.7 0.03 1E-06 51.6 5.1 22 23-44 371-392 (582)
346 3b9q_A Chloroplast SRP recepto 94.7 0.016 5.5E-07 49.0 3.0 24 20-43 99-122 (302)
347 2yvu_A Probable adenylyl-sulfa 94.7 0.026 8.9E-07 43.5 4.0 24 20-43 12-35 (186)
348 1v43_A Sugar-binding transport 94.7 0.017 5.8E-07 50.4 3.2 22 23-44 39-60 (372)
349 1gvn_B Zeta; postsegregational 94.7 0.022 7.5E-07 47.7 3.8 24 20-43 32-55 (287)
350 1via_A Shikimate kinase; struc 94.7 0.017 5.7E-07 44.2 2.8 21 23-43 6-26 (175)
351 2pt5_A Shikimate kinase, SK; a 94.7 0.02 7E-07 43.1 3.3 21 23-43 2-22 (168)
352 2z0h_A DTMP kinase, thymidylat 94.7 0.018 6.2E-07 44.5 3.0 21 23-43 2-22 (197)
353 2kjq_A DNAA-related protein; s 94.7 0.012 4.2E-07 44.3 1.9 22 23-44 38-59 (149)
354 3b60_A Lipid A export ATP-bind 94.7 0.035 1.2E-06 51.1 5.3 35 23-68 371-405 (582)
355 3e70_C DPA, signal recognition 94.6 0.017 6E-07 49.4 3.0 24 20-43 128-151 (328)
356 1zak_A Adenylate kinase; ATP:A 94.6 0.016 5.5E-07 46.1 2.6 22 22-43 6-27 (222)
357 2x8a_A Nuclear valosin-contain 94.6 0.018 6.1E-07 47.9 3.0 21 24-44 47-67 (274)
358 2xb4_A Adenylate kinase; ATP-b 94.6 0.022 7.5E-07 45.6 3.4 21 23-43 2-22 (223)
359 1gtv_A TMK, thymidylate kinase 94.6 0.0081 2.8E-07 47.3 0.7 21 23-43 2-22 (214)
360 3bos_A Putative DNA replicatio 94.6 0.019 6.6E-07 45.5 3.0 23 22-44 53-75 (242)
361 3d31_A Sulfate/molybdate ABC t 94.6 0.014 4.8E-07 50.5 2.2 22 23-44 28-49 (348)
362 2c95_A Adenylate kinase 1; tra 94.5 0.022 7.4E-07 44.0 3.1 22 22-43 10-31 (196)
363 2cvh_A DNA repair and recombin 94.5 0.022 7.7E-07 44.7 3.1 21 23-43 22-42 (220)
364 1odf_A YGR205W, hypothetical 3 94.5 0.027 9.3E-07 47.3 3.8 24 19-42 29-52 (290)
365 1njg_A DNA polymerase III subu 94.5 0.021 7.2E-07 44.9 3.0 21 23-43 47-67 (250)
366 1cr0_A DNA primase/helicase; R 94.5 0.019 6.5E-07 47.9 2.8 22 23-44 37-58 (296)
367 1n0w_A DNA repair protein RAD5 94.4 0.023 7.9E-07 45.4 3.2 22 23-44 26-47 (243)
368 1xjc_A MOBB protein homolog; s 94.4 0.027 9.3E-07 43.6 3.4 22 22-43 5-26 (169)
369 1nn5_A Similar to deoxythymidy 94.4 0.025 8.6E-07 44.4 3.3 22 22-43 10-31 (215)
370 2chg_A Replication factor C sm 94.4 0.023 7.7E-07 44.2 3.0 21 24-44 41-61 (226)
371 2pbr_A DTMP kinase, thymidylat 94.4 0.025 8.7E-07 43.5 3.2 21 23-43 2-22 (195)
372 2bwj_A Adenylate kinase 5; pho 94.4 0.024 8.3E-07 43.9 3.1 23 21-43 12-34 (199)
373 2vli_A Antibiotic resistance p 94.4 0.017 5.9E-07 44.2 2.2 22 22-43 6-27 (183)
374 3tqc_A Pantothenate kinase; bi 94.4 0.032 1.1E-06 47.7 4.0 26 18-43 89-114 (321)
375 3kta_A Chromosome segregation 94.4 0.024 8.2E-07 43.5 3.0 21 23-43 28-48 (182)
376 1rz3_A Hypothetical protein rb 94.4 0.028 9.4E-07 44.2 3.4 24 20-43 21-44 (201)
377 2vp4_A Deoxynucleoside kinase; 94.3 0.016 5.5E-07 46.6 2.0 24 21-44 20-43 (230)
378 2ze6_A Isopentenyl transferase 94.3 0.024 8.1E-07 46.5 3.0 21 23-43 3-23 (253)
379 3gd7_A Fusion complex of cysti 94.3 0.022 7.5E-07 50.0 3.0 21 23-43 49-69 (390)
380 2p5t_B PEZT; postsegregational 94.3 0.024 8.4E-07 46.3 3.1 25 19-43 30-54 (253)
381 1in4_A RUVB, holliday junction 94.3 0.022 7.7E-07 48.5 3.0 22 23-44 53-74 (334)
382 1iy2_A ATP-dependent metallopr 94.3 0.024 8.1E-07 46.9 3.0 21 24-44 76-96 (278)
383 3jvv_A Twitching mobility prot 94.3 0.023 7.7E-07 49.3 3.0 21 23-43 125-145 (356)
384 2yl4_A ATP-binding cassette SU 94.3 0.037 1.3E-06 51.1 4.5 35 23-68 372-406 (595)
385 2obl_A ESCN; ATPase, hydrolase 94.3 0.024 8.3E-07 48.9 3.1 23 23-45 73-95 (347)
386 1sq5_A Pantothenate kinase; P- 94.2 0.031 1.1E-06 47.1 3.7 24 20-43 79-102 (308)
387 1e6c_A Shikimate kinase; phosp 94.2 0.029 9.9E-07 42.4 3.2 21 23-43 4-24 (173)
388 2og2_A Putative signal recogni 94.2 0.025 8.6E-07 49.1 3.0 24 20-43 156-179 (359)
389 4e22_A Cytidylate kinase; P-lo 94.1 0.031 1.1E-06 45.7 3.4 21 22-42 28-48 (252)
390 2pez_A Bifunctional 3'-phospho 94.1 0.029 9.9E-07 43.0 3.0 22 22-43 6-27 (179)
391 2gza_A Type IV secretion syste 94.1 0.025 8.6E-07 48.9 2.9 22 23-44 177-198 (361)
392 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.035 1.2E-06 45.6 3.6 22 22-43 5-26 (260)
393 3qf4_B Uncharacterized ABC tra 94.1 0.044 1.5E-06 50.6 4.7 35 23-68 383-417 (598)
394 2yhs_A FTSY, cell division pro 94.1 0.026 8.9E-07 51.1 3.0 24 20-43 292-315 (503)
395 2w58_A DNAI, primosome compone 94.1 0.03 1E-06 43.7 3.0 23 22-44 55-77 (202)
396 1lv7_A FTSH; alpha/beta domain 94.0 0.029 9.9E-07 45.6 3.0 22 23-44 47-68 (257)
397 2ewv_A Twitching motility prot 94.0 0.029 1E-06 48.8 3.2 21 23-43 138-158 (372)
398 4a82_A Cystic fibrosis transme 94.0 0.037 1.3E-06 50.9 3.9 35 23-68 369-403 (578)
399 3szr_A Interferon-induced GTP- 94.0 0.02 6.7E-07 53.2 2.1 23 23-45 47-69 (608)
400 1uj2_A Uridine-cytidine kinase 94.0 0.037 1.3E-06 45.0 3.6 26 18-43 19-44 (252)
401 1vht_A Dephospho-COA kinase; s 94.0 0.039 1.3E-06 43.7 3.6 23 21-43 4-26 (218)
402 4eaq_A DTMP kinase, thymidylat 93.9 0.032 1.1E-06 45.1 3.0 25 20-44 25-49 (229)
403 1azs_C GS-alpha; complex (lyas 93.9 0.037 1.3E-06 48.8 3.6 25 18-42 37-61 (402)
404 2npi_A Protein CLP1; CLP1-PCF1 93.9 0.024 8.2E-07 50.8 2.5 22 23-44 140-161 (460)
405 2iyv_A Shikimate kinase, SK; t 93.9 0.036 1.2E-06 42.5 3.1 21 23-43 4-24 (184)
406 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.027 9.2E-07 48.2 2.5 22 23-44 173-194 (330)
407 1m7g_A Adenylylsulfate kinase; 93.8 0.035 1.2E-06 43.9 3.0 22 22-43 26-47 (211)
408 4ido_A Atlastin-1; GTPase, GTP 93.8 0.1 3.5E-06 46.6 6.3 63 19-81 65-151 (457)
409 2dr3_A UPF0273 protein PH0284; 93.7 0.036 1.2E-06 44.3 3.0 21 23-43 25-45 (247)
410 1nij_A Hypothetical protein YJ 93.7 0.026 8.9E-07 47.9 2.2 22 23-44 6-27 (318)
411 2f6r_A COA synthase, bifunctio 93.6 0.067 2.3E-06 44.5 4.6 25 18-42 72-96 (281)
412 2dpy_A FLII, flagellum-specifi 93.6 0.036 1.2E-06 49.3 3.1 22 23-44 159-180 (438)
413 1nlf_A Regulatory protein REPA 93.6 0.037 1.3E-06 45.7 2.9 21 23-43 32-52 (279)
414 3h4m_A Proteasome-activating n 93.6 0.038 1.3E-06 45.5 2.9 23 22-44 52-74 (285)
415 2qen_A Walker-type ATPase; unk 93.6 0.039 1.3E-06 46.4 3.0 22 23-44 33-54 (350)
416 1p9r_A General secretion pathw 93.6 0.037 1.3E-06 49.0 3.0 22 23-44 169-190 (418)
417 2qby_A CDC6 homolog 1, cell di 93.5 0.036 1.2E-06 47.1 2.8 22 23-44 47-68 (386)
418 1q3t_A Cytidylate kinase; nucl 93.5 0.047 1.6E-06 44.0 3.3 27 17-43 12-38 (236)
419 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.042 1.4E-06 44.5 3.0 22 22-43 40-61 (262)
420 3nwj_A ATSK2; P loop, shikimat 93.4 0.038 1.3E-06 45.4 2.6 22 22-43 49-70 (250)
421 3b9p_A CG5977-PA, isoform A; A 93.4 0.042 1.4E-06 45.5 2.9 23 22-44 55-77 (297)
422 1yqt_A RNAse L inhibitor; ATP- 93.4 0.047 1.6E-06 49.8 3.5 22 23-44 49-70 (538)
423 3r20_A Cytidylate kinase; stru 93.4 0.053 1.8E-06 44.1 3.4 24 20-43 8-31 (233)
424 1zuh_A Shikimate kinase; alpha 93.3 0.054 1.9E-06 40.9 3.3 22 22-43 8-29 (168)
425 3qf4_A ABC transporter, ATP-bi 93.3 0.056 1.9E-06 49.9 3.9 28 23-55 371-398 (587)
426 1ltq_A Polynucleotide kinase; 93.3 0.048 1.7E-06 45.3 3.2 22 22-43 3-24 (301)
427 2fna_A Conserved hypothetical 93.3 0.042 1.4E-06 46.2 2.8 22 23-44 32-53 (357)
428 1f2t_A RAD50 ABC-ATPase; DNA d 93.3 0.056 1.9E-06 40.6 3.2 19 24-42 26-44 (149)
429 3n70_A Transport activator; si 93.2 0.054 1.8E-06 40.2 3.0 24 22-45 25-48 (145)
430 1l8q_A Chromosomal replication 93.2 0.046 1.6E-06 46.0 2.9 22 23-44 39-60 (324)
431 2px0_A Flagellar biosynthesis 93.1 0.046 1.6E-06 46.0 2.8 63 70-136 183-252 (296)
432 2oap_1 GSPE-2, type II secreti 93.1 0.047 1.6E-06 49.6 2.9 22 23-44 262-283 (511)
433 1fnn_A CDC6P, cell division co 93.1 0.051 1.7E-06 46.5 3.0 22 23-44 46-67 (389)
434 1ofh_A ATP-dependent HSL prote 93.1 0.053 1.8E-06 44.9 3.0 22 22-43 51-72 (310)
435 3t15_A Ribulose bisphosphate c 93.0 0.051 1.7E-06 45.5 2.8 24 21-44 36-59 (293)
436 2qmh_A HPR kinase/phosphorylas 93.0 0.06 2E-06 42.9 3.1 24 22-45 35-58 (205)
437 3syl_A Protein CBBX; photosynt 92.9 0.068 2.3E-06 44.4 3.6 23 21-43 67-89 (309)
438 3euj_A Chromosome partition pr 92.9 0.053 1.8E-06 48.9 3.0 21 23-43 31-51 (483)
439 3cf0_A Transitional endoplasmi 92.8 0.057 1.9E-06 45.2 2.9 22 23-44 51-72 (301)
440 3a8t_A Adenylate isopentenyltr 92.8 0.067 2.3E-06 46.0 3.3 23 22-44 41-63 (339)
441 1sxj_E Activator 1 40 kDa subu 92.7 0.049 1.7E-06 46.2 2.5 20 24-43 39-58 (354)
442 3ozx_A RNAse L inhibitor; ATP 92.7 0.057 1.9E-06 49.4 2.9 22 23-44 27-48 (538)
443 1vma_A Cell division protein F 92.7 0.064 2.2E-06 45.4 3.0 22 21-42 104-125 (306)
444 3j16_B RLI1P; ribosome recycli 92.7 0.063 2.2E-06 49.8 3.2 22 23-44 105-126 (608)
445 3ec1_A YQEH GTPase; atnos1, at 92.6 0.019 6.6E-07 49.9 -0.3 58 78-138 56-113 (369)
446 1svm_A Large T antigen; AAA+ f 92.6 0.064 2.2E-06 46.8 3.0 21 23-43 171-191 (377)
447 1sxj_C Activator 1 40 kDa subu 92.5 0.065 2.2E-06 45.5 2.9 21 24-44 49-69 (340)
448 1d2n_A N-ethylmaleimide-sensit 92.5 0.097 3.3E-06 42.8 3.9 25 20-44 63-87 (272)
449 1sxj_D Activator 1 41 kDa subu 92.5 0.068 2.3E-06 45.2 3.0 21 24-44 61-81 (353)
450 4f4c_A Multidrug resistance pr 92.5 0.057 1.9E-06 54.5 2.8 35 23-68 1107-1141(1321)
451 4fcw_A Chaperone protein CLPB; 92.5 0.069 2.4E-06 44.3 3.0 23 22-44 48-70 (311)
452 2r8r_A Sensor protein; KDPD, P 92.4 0.1 3.5E-06 42.3 3.8 24 19-42 4-27 (228)
453 3d3q_A TRNA delta(2)-isopenten 92.4 0.098 3.3E-06 45.0 3.8 23 22-44 8-30 (340)
454 3qf7_A RAD50; ABC-ATPase, ATPa 92.4 0.075 2.6E-06 46.0 3.2 19 24-42 26-44 (365)
455 2v1u_A Cell division control p 92.4 0.058 2E-06 45.9 2.5 23 22-44 45-67 (387)
456 1yqt_A RNAse L inhibitor; ATP- 92.3 0.082 2.8E-06 48.3 3.5 22 23-44 314-335 (538)
457 3uk6_A RUVB-like 2; hexameric 92.3 0.068 2.3E-06 45.6 2.8 22 23-44 72-93 (368)
458 3bk7_A ABC transporter ATP-bin 92.2 0.076 2.6E-06 49.3 3.1 22 23-44 119-140 (607)
459 1pzn_A RAD51, DNA repair and r 92.2 0.075 2.6E-06 45.7 2.9 22 23-44 133-154 (349)
460 3exa_A TRNA delta(2)-isopenten 92.2 0.084 2.9E-06 45.0 3.1 22 23-44 5-26 (322)
461 3pxg_A Negative regulator of g 92.2 0.074 2.5E-06 47.6 3.0 23 22-44 202-224 (468)
462 1xwi_A SKD1 protein; VPS4B, AA 92.2 0.077 2.6E-06 45.0 2.9 23 22-44 46-68 (322)
463 4f4c_A Multidrug resistance pr 92.1 0.14 4.9E-06 51.6 5.3 28 23-55 446-473 (1321)
464 3bk7_A ABC transporter ATP-bin 92.1 0.089 3E-06 48.8 3.5 22 23-44 384-405 (607)
465 2grj_A Dephospho-COA kinase; T 92.1 0.1 3.5E-06 40.9 3.4 26 19-44 10-35 (192)
466 3zvl_A Bifunctional polynucleo 92.1 0.12 4E-06 45.6 4.1 25 20-44 257-281 (416)
467 1tf7_A KAIC; homohexamer, hexa 92.1 0.076 2.6E-06 48.2 2.9 19 23-41 41-59 (525)
468 2qby_B CDC6 homolog 3, cell di 92.1 0.077 2.6E-06 45.4 2.8 22 23-44 47-68 (384)
469 2zts_A Putative uncharacterize 92.0 0.096 3.3E-06 41.8 3.2 20 23-42 32-51 (251)
470 3ozx_A RNAse L inhibitor; ATP 91.9 0.079 2.7E-06 48.4 2.9 22 23-44 296-317 (538)
471 1tue_A Replication protein E1; 91.9 0.067 2.3E-06 42.9 2.1 21 23-43 60-80 (212)
472 3pfi_A Holliday junction ATP-d 91.9 0.088 3E-06 44.4 3.0 22 23-44 57-78 (338)
473 3eie_A Vacuolar protein sortin 91.9 0.087 3E-06 44.5 2.9 23 22-44 52-74 (322)
474 3crm_A TRNA delta(2)-isopenten 91.9 0.092 3.1E-06 44.8 3.0 23 22-44 6-28 (323)
475 3ake_A Cytidylate kinase; CMP 91.8 0.11 3.7E-06 40.3 3.2 21 23-43 4-24 (208)
476 3lda_A DNA repair protein RAD5 91.7 0.094 3.2E-06 46.1 2.9 20 23-42 180-199 (400)
477 3foz_A TRNA delta(2)-isopenten 91.7 0.14 4.7E-06 43.6 3.8 23 22-44 11-33 (316)
478 2r62_A Cell division protease 91.6 0.044 1.5E-06 44.7 0.7 21 24-44 47-67 (268)
479 2ocp_A DGK, deoxyguanosine kin 91.6 0.12 4E-06 41.6 3.3 23 22-44 3-25 (241)
480 2bjv_A PSP operon transcriptio 91.6 0.11 3.6E-06 42.4 3.0 24 22-45 30-53 (265)
481 3qks_A DNA double-strand break 91.6 0.12 4E-06 40.8 3.2 19 24-42 26-44 (203)
482 3co5_A Putative two-component 91.5 0.054 1.8E-06 40.1 1.1 23 22-44 28-50 (143)
483 3g5u_A MCG1178, multidrug resi 91.5 0.17 5.7E-06 51.0 4.9 21 23-43 418-438 (1284)
484 1um8_A ATP-dependent CLP prote 91.5 0.1 3.5E-06 44.9 3.0 23 22-44 73-95 (376)
485 4edh_A DTMP kinase, thymidylat 91.5 0.11 3.8E-06 41.5 3.0 22 22-43 7-28 (213)
486 2qgz_A Helicase loader, putati 91.4 0.12 4E-06 43.7 3.2 23 22-44 153-175 (308)
487 3j16_B RLI1P; ribosome recycli 91.4 0.11 3.8E-06 48.2 3.2 21 24-44 381-401 (608)
488 2iw3_A Elongation factor 3A; a 91.3 0.12 4.2E-06 50.4 3.6 24 23-46 463-486 (986)
489 2r44_A Uncharacterized protein 91.3 0.081 2.8E-06 44.6 2.1 21 23-43 48-68 (331)
490 3v9p_A DTMP kinase, thymidylat 91.2 0.089 3E-06 42.6 2.2 23 21-43 25-47 (227)
491 2ga8_A Hypothetical 39.9 kDa p 91.2 0.15 5.2E-06 44.1 3.8 22 21-42 24-45 (359)
492 2qp9_X Vacuolar protein sortin 91.2 0.11 3.8E-06 44.6 3.0 22 23-44 86-107 (355)
493 2orw_A Thymidine kinase; TMTK, 91.2 0.12 4.2E-06 40.1 2.9 20 24-43 6-25 (184)
494 3tqf_A HPR(Ser) kinase; transf 91.2 0.14 4.6E-06 40.0 3.1 23 23-45 18-40 (181)
495 3d8b_A Fidgetin-like protein 1 91.2 0.11 3.9E-06 44.5 3.0 24 21-44 117-140 (357)
496 4b4t_K 26S protease regulatory 91.2 0.12 4E-06 46.0 3.0 22 23-44 208-229 (428)
497 2z4s_A Chromosomal replication 91.1 0.11 3.9E-06 46.0 2.9 21 23-43 132-152 (440)
498 1iqp_A RFCS; clamp loader, ext 91.1 0.12 4.3E-06 42.8 3.0 22 23-44 48-69 (327)
499 3m6a_A ATP-dependent protease 91.0 0.11 3.9E-06 47.3 2.9 21 23-43 110-130 (543)
500 1c9k_A COBU, adenosylcobinamid 91.0 0.14 4.9E-06 39.9 3.1 21 24-44 2-22 (180)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.1e-32 Score=226.57 Aligned_cols=156 Identities=24% Similarity=0.376 Sum_probs=129.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
+.+.|||+|||++|||||||++||+.+.|...|.||++.++..+.+.+++..+.++||||+|+++|+.+++.|+++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
++|||++ ||+++..|+..+.+......+++++|||.|+...+.....+.. .+...+..+.|+++ ..|++++|..
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 9999999 9999999999999998888889999999999887765554443 66677777888877 7789999987
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 170 i~ 171 (216)
T 4dkx_A 170 VA 171 (216)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 2
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.94 E-value=2.7e-26 Score=183.32 Aligned_cols=173 Identities=32% Similarity=0.491 Sum_probs=132.6
Q ss_pred CCCCCCCCCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 1 MSSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 1 ~s~~~~~~~~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
|-+|+.--++...........+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+++..+.+.|||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 80 (191)
T 2a5j_A 1 MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80 (191)
T ss_dssp ---------CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred CCccccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc
Confidence 34455555666667778889999999999999999999999999998888999998888888999999999999999999
Q ss_pred cccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCc
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPF 156 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~ 156 (231)
+.+..++..+++++|++|+|||++ +++.+..|+.++.+......+.++++||.|+...+.....+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 160 (191)
T 2a5j_A 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIF 160 (191)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEE
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEE
Confidence 999999999999999999999999 8999999999999887777788899999999765443222222 344445556
Q ss_pred ccccc--ccchhhhhhhhc
Q psy5781 157 PQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 157 ~ev~~--~~nv~e~f~~~~ 173 (231)
.+++. ..|++++|...+
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 161 METSAKTACNVEEAFINTA 179 (191)
T ss_dssp EEECTTTCTTHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 66655 567777776644
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.5e-26 Score=184.57 Aligned_cols=160 Identities=40% Similarity=0.650 Sum_probs=133.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccC
Q psy5781 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (231)
Q Consensus 14 ~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 93 (231)
.++.+++.+||+++|++|||||||+++|+++.+...+.+|++.++..+.+.+++..+.+.|||++|++++..++..++++
T Consensus 19 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp ---CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTT
T ss_pred CccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 35567889999999999999999999999999998899999999998999999999999999999999999999999999
Q ss_pred CcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhh
Q psy5781 94 ANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGH 167 (231)
Q Consensus 94 ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e 167 (231)
+|++|+|||++ +|+.+..|+.++.+......+.++++||.|+...+.....+.. .+...+..+.+++. ..|+++
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999 9999999999999887777778899999999765443222222 34445566667665 567888
Q ss_pred hhhhhc
Q psy5781 168 AFSTSL 173 (231)
Q Consensus 168 ~f~~~~ 173 (231)
+|...+
T Consensus 179 l~~~l~ 184 (201)
T 2ew1_A 179 LFLDLA 184 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.94 E-value=5.4e-26 Score=183.54 Aligned_cols=159 Identities=43% Similarity=0.697 Sum_probs=122.6
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
.++.++.+||+|+|++|||||||+++|+++.|...+.+|++.++..+.+.+++..+.+.|||++|++++..++..+++++
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 45567889999999999999999999999999888999999889888999999999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCC-Ccccccc--ccchhh
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAM-PFPQVWP--CLKFGH 167 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~-~~~ev~~--~~nv~e 167 (231)
|++|+|||++ +|+.+..|+.++.+......+.++++||.|+...+.....+.. .+...+. .+.+++. ..|+++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 9999999999 8999999999999887777778899999999765443322222 3444454 5566655 567888
Q ss_pred hhhhhc
Q psy5781 168 AFSTSL 173 (231)
Q Consensus 168 ~f~~~~ 173 (231)
+|...+
T Consensus 183 l~~~l~ 188 (201)
T 2hup_A 183 AFLRVA 188 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=178.34 Aligned_cols=163 Identities=36% Similarity=0.624 Sum_probs=137.5
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhc
Q psy5781 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSY 90 (231)
Q Consensus 11 ~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 90 (231)
++.+....+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++.+..++..+
T Consensus 6 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 85 (196)
T 3tkl_A 6 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85 (196)
T ss_dssp -----CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHH
T ss_pred hhhcCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHH
Confidence 34445566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccc
Q psy5781 91 YRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLK 164 (231)
Q Consensus 91 ~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~n 164 (231)
++.+|++|+|||++ +++.+..|+..+.+......+.++++||.|+...+........ .+...+.++.+++. ..|
T Consensus 86 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165 (196)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 99999999999999 8999999999999988878888899999999876554332222 45566677777766 667
Q ss_pred hhhhhhhhc
Q psy5781 165 FGHAFSTSL 173 (231)
Q Consensus 165 v~e~f~~~~ 173 (231)
++++|...+
T Consensus 166 v~~l~~~l~ 174 (196)
T 3tkl_A 166 VEQSFMTMA 174 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
No 6
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.94 E-value=7e-26 Score=180.83 Aligned_cols=173 Identities=34% Similarity=0.535 Sum_probs=130.5
Q ss_pred CCCCCCCCCCCCCC----CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEee
Q psy5781 1 MSSSLTNDHPNTFQ----DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76 (231)
Q Consensus 1 ~s~~~~~~~~~~~~----~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D 76 (231)
|+|+...+++++.+ .+++++.+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+++..+.+.|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 80 (193)
T 2oil_A 1 MGSSHHHHHHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80 (193)
T ss_dssp -------------------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCcccccccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEe
Confidence 45555554443333 44567889999999999999999999999999988999999999888899999999999999
Q ss_pred CCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhc
Q psy5781 77 TAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSS 152 (231)
Q Consensus 77 ~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~ 152 (231)
++|++++..++..+++++|++|+|||++ +++.+..|+..+........+.++++||.|+...+........ .....
T Consensus 81 t~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 160 (193)
T 2oil_A 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 160 (193)
T ss_dssp ESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc
Confidence 9999999999999999999999999999 8899999999998877667778899999999765443222222 33344
Q ss_pred CCCcccccc--ccchhhhhhhhc
Q psy5781 153 AMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 153 ~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
+..+.+++. ..|++++|...+
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 161 GLLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHH
Confidence 555555555 456777776543
No 7
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.94 E-value=3.5e-26 Score=180.75 Aligned_cols=158 Identities=37% Similarity=0.612 Sum_probs=105.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
++.++.+||+++|++|||||||+++|+++.+...+.||++.++....+.+++..+.+.|||++|++++..++..+++++|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 34678899999999999999999999999998889999999998888999999999999999999999999999999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhh
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
++|+|||++ +|+.+..|+.++.+......+.++++||.|+...+.....+.. .+...+.++.+++. ..|++++|
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999 8999999999999887777788899999999765543322222 34444555666655 56777777
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 163 ~~l~ 166 (183)
T 2fu5_C 163 FTLA 166 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 8
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.94 E-value=1.7e-25 Score=178.12 Aligned_cols=163 Identities=29% Similarity=0.465 Sum_probs=133.2
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhc
Q psy5781 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSY 90 (231)
Q Consensus 11 ~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 90 (231)
........++.+||+|+|++|||||||+++|+++.+...+.++++.++....+..++..+.+.|||++|++.+..++..+
T Consensus 12 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 91 (189)
T 2gf9_A 12 SGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91 (189)
T ss_dssp --CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGG
T ss_pred cCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHh
Confidence 33334556788999999999999999999999999988899999988888888889999999999999999999999999
Q ss_pred ccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccc
Q psy5781 91 YRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLK 164 (231)
Q Consensus 91 ~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~n 164 (231)
++.+|++|+|||++ +++.+..|+..+.+......+.++++||.|+...+........ .+...+..+.+++. ..|
T Consensus 92 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 92 YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999999998 8999999999998887677778899999999765443222221 34445555666655 556
Q ss_pred hhhhhhhhc
Q psy5781 165 FGHAFSTSL 173 (231)
Q Consensus 165 v~e~f~~~~ 173 (231)
++++|...+
T Consensus 172 i~~l~~~l~ 180 (189)
T 2gf9_A 172 VKQVFERLV 180 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776544
No 9
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.93 E-value=3.5e-25 Score=178.71 Aligned_cols=157 Identities=39% Similarity=0.651 Sum_probs=133.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
+.++.+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.|||++|++.+..++..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 46788999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
+|+|||++ +++.+..|+.++........+.++++||.|+...+........ .+...+.++.+++. ..|++++|.
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999 8999999999999888777778899999999875543222222 34455666666665 567777776
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 164 ~l~ 166 (206)
T 2bcg_Y 164 TMA 166 (206)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 10
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.93 E-value=6.9e-26 Score=182.62 Aligned_cols=173 Identities=35% Similarity=0.544 Sum_probs=119.9
Q ss_pred CCCCCCCCCCCCCC----CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEee
Q psy5781 1 MSSSLTNDHPNTFQ----DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76 (231)
Q Consensus 1 ~s~~~~~~~~~~~~----~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D 76 (231)
||||-..++++..+ .++.++.+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D 80 (200)
T 2o52_A 1 MGSSHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWD 80 (200)
T ss_dssp ---------------------CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEEC
T ss_pred CCccccccccccccccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEc
Confidence 55555555444333 44467889999999999999999999999999888999999889888899999999999999
Q ss_pred CCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhc
Q psy5781 77 TAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSS 152 (231)
Q Consensus 77 ~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~ 152 (231)
++|++.+..++..+++.+|++|+|||++ +++.+..|+.++........+.++++||.|+...+.....+.. .+...
T Consensus 81 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~ 160 (200)
T 2o52_A 81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN 160 (200)
T ss_dssp CTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred CCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc
Confidence 9999999999999999999999999999 9999999999998887777778899999999755443222222 34445
Q ss_pred CCCcccccc--ccchhhhhhhhc
Q psy5781 153 AMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 153 ~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
+..+.+++. ..|++++|...+
T Consensus 161 ~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 161 ELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHH
Confidence 555666655 567777776654
No 11
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.93 E-value=3e-25 Score=175.59 Aligned_cols=159 Identities=36% Similarity=0.618 Sum_probs=132.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
+++.++.+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++.+..++..+++++
T Consensus 4 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 83 (186)
T 2bme_A 4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA 83 (186)
T ss_dssp CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999999988999999899888999999999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhh
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
|++|+|||++ +++.+..|+.++........+.++++||.|+...+.....+.. .+...+..+.+++. ..|++++
T Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 84 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 9999999999 9999999999998887777788899999999755443322222 34445555666655 5567777
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|...+
T Consensus 164 ~~~l~ 168 (186)
T 2bme_A 164 FVQCA 168 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 12
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.93 E-value=3.6e-25 Score=173.52 Aligned_cols=158 Identities=32% Similarity=0.609 Sum_probs=131.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
...++.+||+|+|++|||||||+++|+++.+...+.+|.+.++..+.+.+++..+.+.|||++|++++..++..+++++|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 44678899999999999999999999999999889999998888888899999999999999999999999999999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhh
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
++|+|||++ +++.+..|+.++........+.++++||.|+...+.....+.. .....+.++.+++. ..|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999 8999999999999888777788899999999765443322222 34445556666655 56777777
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 170 ~~l~ 173 (179)
T 1z0f_A 170 LEAA 173 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 13
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.93 E-value=7.4e-25 Score=173.09 Aligned_cols=165 Identities=21% Similarity=0.321 Sum_probs=131.1
Q ss_pred CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhh
Q psy5781 8 DHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT 87 (231)
Q Consensus 8 ~~~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 87 (231)
++.++.+.......+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.|||++|++++..++
T Consensus 5 s~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 83 (183)
T 3kkq_A 5 SMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMR 83 (183)
T ss_dssp ---------CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSH
T ss_pred ccccccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHH
Confidence 344455555677889999999999999999999999999999999998666 6788889999999999999999999999
Q ss_pred hhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCccccccc
Q psy5781 88 QSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWPC 162 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~~ 162 (231)
..+++++|++|+|||++ +|+.+..|+..+.+... ...+.++++||.|+...+.....+.. .+...+.++.+++..
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 163 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCS
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccC
Confidence 99999999999999999 99999999999987654 45557799999999775554333332 455666777777754
Q ss_pred ---cchhhhhhhhc
Q psy5781 163 ---LKFGHAFSTSL 173 (231)
Q Consensus 163 ---~nv~e~f~~~~ 173 (231)
.|++++|...+
T Consensus 164 ~~~~~v~~l~~~l~ 177 (183)
T 3kkq_A 164 DPPLNVDKTFHDLV 177 (183)
T ss_dssp SSCBSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 57888887654
No 14
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=4.3e-25 Score=171.88 Aligned_cols=157 Identities=31% Similarity=0.461 Sum_probs=123.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
+.++.+||+++|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.|||++|++++..++..+++++|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 34678999999999999999999999999988899999988888888899999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
+++|||++ +++.+..|+..+........+.++++||.|+...+.....+.. .+...+.++.+++. ..|++++|.
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999 8999999999998887777778899999999765443322222 34444555556655 556777776
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 162 ~l~ 164 (170)
T 1z08_A 162 DLC 164 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 15
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=177.11 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=122.8
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcc
Q psy5781 12 TFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYY 91 (231)
Q Consensus 12 ~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~ 91 (231)
..........+||+++|++|||||||+++|+++.|...+.+|++.++ ...+.+++..+.+.|||++|++++..+ ..++
T Consensus 12 ~~~~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~ 89 (187)
T 3c5c_A 12 ENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYL 89 (187)
T ss_dssp --------CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHH
T ss_pred hhHHhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHH
Confidence 33344456789999999999999999999999999999999999666 456788999999999999999998875 6799
Q ss_pred cCCcEEEEEEecC---cHhhHHHHHHHHHHhcC---CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc---
Q psy5781 92 RSANGVIIEVTSV---EYCYQRNWHKQAVTLFD---KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--- 161 (231)
Q Consensus 92 ~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~---~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--- 161 (231)
+++|++|+|||++ +|+++..|+.++.+... ...+.++++||.|+...+.....+.. .+...+..+.+++.
T Consensus 90 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 169 (187)
T 3c5c_A 90 NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD 169 (187)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSC
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCc
Confidence 9999999999999 99999999999988753 45667899999999765544333222 45555667777776
Q ss_pred ccchhhhhhhhc
Q psy5781 162 CLKFGHAFSTSL 173 (231)
Q Consensus 162 ~~nv~e~f~~~~ 173 (231)
..|++++|...+
T Consensus 170 g~gv~~lf~~l~ 181 (187)
T 3c5c_A 170 FEHVQHVFHEAV 181 (187)
T ss_dssp SHHHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 357888887654
No 16
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.3e-26 Score=183.68 Aligned_cols=162 Identities=32% Similarity=0.494 Sum_probs=136.0
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcc
Q psy5781 12 TFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYY 91 (231)
Q Consensus 12 ~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~ 91 (231)
....++.++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++.+..++..++
T Consensus 14 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 93 (191)
T 3dz8_A 14 LYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93 (191)
T ss_dssp EEETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHH
T ss_pred cccccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHH
Confidence 33455678899999999999999999999999999999999999889988899888889999999999999999999999
Q ss_pred cCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccch
Q psy5781 92 RSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKF 165 (231)
Q Consensus 92 ~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv 165 (231)
+++|++|+|||++ +++.+..|+..+........+.++++||.|+...+........ .+...+..+.+++. ..|+
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV 173 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 9999999999999 9999999999999988777788899999999765543332222 44555666666665 5678
Q ss_pred hhhhhhhc
Q psy5781 166 GHAFSTSL 173 (231)
Q Consensus 166 ~e~f~~~~ 173 (231)
+++|...+
T Consensus 174 ~~l~~~l~ 181 (191)
T 3dz8_A 174 RQAFERLV 181 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 17
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4e-25 Score=181.07 Aligned_cols=157 Identities=34% Similarity=0.586 Sum_probs=124.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
..+..+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.|||++|++++..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 45778999999999999999999999999998899999999988889999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
+|+|||++ +|+.+..|+.++........+.++++||.|+...+.....+.. .+...+..+.+++. ..|++++|.
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999 9999999999998887767778899999999765443222222 34455566666665 567888886
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 169 ~l~ 171 (223)
T 3cpj_B 169 ELI 171 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 18
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=5.6e-26 Score=182.76 Aligned_cols=165 Identities=36% Similarity=0.637 Sum_probs=132.7
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhh
Q psy5781 10 PNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQS 89 (231)
Q Consensus 10 ~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~ 89 (231)
+++.+....++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++++..++..
T Consensus 22 pm~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 101 (199)
T 3l0i_B 22 PMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSS 101 (199)
T ss_dssp ---CC-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC
T ss_pred cccccCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHH
Confidence 46666667788999999999999999999999999999888999998999899999999999999999999999999999
Q ss_pred cccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--cc
Q psy5781 90 YYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CL 163 (231)
Q Consensus 90 ~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~ 163 (231)
+++++|++|+|||++ +|+.+..|+..+........+.++++||.|+...+........ .+...+.++.+++. ..
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNAT 181 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---H
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 999999999999999 9999999999998887777888899999999766554332222 55666777777776 67
Q ss_pred chhhhhhhhcc
Q psy5781 164 KFGHAFSTSLA 174 (231)
Q Consensus 164 nv~e~f~~~~~ 174 (231)
|++++|...+.
T Consensus 182 gv~~l~~~l~~ 192 (199)
T 3l0i_B 182 NVEQSFMTMAA 192 (199)
T ss_dssp HHHHHHHHHTT
T ss_pred CHHHHHHHHHH
Confidence 88888887664
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=171.15 Aligned_cols=159 Identities=35% Similarity=0.550 Sum_probs=126.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccC
Q psy5781 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (231)
Q Consensus 14 ~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 93 (231)
+..+.+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++.+..++..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34567789999999999999999999999999988899999999998999999999999999999999999999999999
Q ss_pred CcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhh
Q psy5781 94 ANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGH 167 (231)
Q Consensus 94 ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e 167 (231)
+|++|+|||++ +++.+..|+..+.+..+ ..+.++++||.|+...+........ .+...+.++.+++. ..|+++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999 99999999999988665 4556689999998765543322222 44445566666665 567777
Q ss_pred hhhhhc
Q psy5781 168 AFSTSL 173 (231)
Q Consensus 168 ~f~~~~ 173 (231)
+|....
T Consensus 161 l~~~l~ 166 (181)
T 3tw8_B 161 MFNCIT 166 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 20
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.3e-25 Score=177.44 Aligned_cols=163 Identities=33% Similarity=0.498 Sum_probs=123.8
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhc
Q psy5781 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSY 90 (231)
Q Consensus 11 ~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 90 (231)
.....+..+..+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.|||++|++++..++..+
T Consensus 16 ~~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 95 (192)
T 2il1_A 16 PRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95 (192)
T ss_dssp ------CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHH
T ss_pred CCCCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHH
Confidence 33445567789999999999999999999999999988899999999998999999999999999999999999999999
Q ss_pred ccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhh-cCCCcccccc--cc
Q psy5781 91 YRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASS-SAMPFPQVWP--CL 163 (231)
Q Consensus 91 ~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~-~~~~~~ev~~--~~ 163 (231)
++++|++|+|||++ +++.+..|+..+........+.++++||.|+...+.....+.. .+.. .+..+.+++. ..
T Consensus 96 ~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 99999999999999 9999999999998888777888899999999765543322222 2322 2445555555 55
Q ss_pred chhhhhhhhc
Q psy5781 164 KFGHAFSTSL 173 (231)
Q Consensus 164 nv~e~f~~~~ 173 (231)
|++++|...+
T Consensus 176 gi~~l~~~l~ 185 (192)
T 2il1_A 176 NVDEIFLKLV 185 (192)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7777776543
No 21
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.93 E-value=1.5e-24 Score=174.39 Aligned_cols=157 Identities=30% Similarity=0.495 Sum_probs=128.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
..++.+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.|||++|++.+..++..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45678999999999999999999999999988899999999988888999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
+|+|||++ +++.+..|+..+........+.++++||.|+...+........ .+...+.++.+++. ..|++++|.
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999 8999999999998887677778899999999765443222111 33333444555544 445666665
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 164 ~l~ 166 (203)
T 1zbd_A 164 RLV 166 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 22
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.93 E-value=8.8e-25 Score=174.03 Aligned_cols=160 Identities=31% Similarity=0.509 Sum_probs=130.0
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc-hhhhhccc
Q psy5781 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR-TITQSYYR 92 (231)
Q Consensus 14 ~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~ 92 (231)
........+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++++. .++..+++
T Consensus 13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (189)
T 1z06_A 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 92 (189)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhc
Confidence 33445678999999999999999999999999998899999999988899999999999999999999998 88999999
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--c---
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--C--- 162 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~--- 162 (231)
++|++|+|||++ +++.+..|+.++.+.. ....+.++++||.|+...+........ .+...+.++.+++. .
T Consensus 93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDN 172 (189)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcc
Confidence 999999999999 8999999999998886 445667899999999765443322222 44555667777776 3
Q ss_pred cchhhhhhhhc
Q psy5781 163 LKFGHAFSTSL 173 (231)
Q Consensus 163 ~nv~e~f~~~~ 173 (231)
.|++++|...+
T Consensus 173 ~~i~~l~~~l~ 183 (189)
T 1z06_A 173 DHVEAIFMTLA 183 (189)
T ss_dssp SCHHHHHHHHC
T ss_pred cCHHHHHHHHH
Confidence 67888887765
No 23
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=8.2e-25 Score=174.95 Aligned_cols=159 Identities=26% Similarity=0.369 Sum_probs=131.6
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
.+..++.+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++++..++..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 44567889999999999999999999999999888999999998888888888899999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhh
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
|++|+|||++ +++.+..|+.++.+......+.++++||.|+...+.....+.. .+...+.++.+++. ..|++++
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence 9999999998 8999999999999887777788899999999754443222222 44455556666665 5678888
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|....
T Consensus 177 ~~~l~ 181 (192)
T 2fg5_A 177 FQGIS 181 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=1.8e-24 Score=170.14 Aligned_cols=157 Identities=26% Similarity=0.402 Sum_probs=131.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.+...+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++++..++..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45678999999999999999999999999998889999988888888999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
+|+|||++ +++.+..|+..+.+......+.++++||.|+...+.....+.. .....+.++.+++. ..|++++|.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999 8999999999999887777778899999999765543322222 34445556666665 567888887
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 168 ~l~ 170 (181)
T 2efe_B 168 EIA 170 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 755
No 25
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.3e-24 Score=169.41 Aligned_cols=158 Identities=34% Similarity=0.578 Sum_probs=123.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
+..+..+||+++|++|||||||+++|+++.+. ..+.+|++.++....+.+++..+.+.|||++|++.+..++..+++++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 45678899999999999999999999999885 56889999888888888999999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhh
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
|++|+|||++ +++.+..|+.++........+.++++||.|+...+........ .+...+.++.+++. ..|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999 8999999999999888777788899999999865443222222 34444556666665 5677777
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|...+
T Consensus 165 ~~~l~ 169 (180)
T 2g6b_A 165 FTAIA 169 (180)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 26
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=5.3e-25 Score=179.58 Aligned_cols=161 Identities=15% Similarity=0.221 Sum_probs=123.2
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhc
Q psy5781 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSY 90 (231)
Q Consensus 11 ~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 90 (231)
+....+.....+||+|+|++|||||||+++|+++.|...+.||++.++ ...+.+++..+.+.|||++|++++..++..+
T Consensus 17 q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 95 (214)
T 3q3j_B 17 QGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLC 95 (214)
T ss_dssp ----------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGG
T ss_pred hccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHH
Confidence 334445566789999999999999999999999999999999999766 4677788889999999999999999999999
Q ss_pred ccCCcEEEEEEecC---cHhh-HHHHHHHHHHhcCCcceeeecccccCCCCC------------ccccccch-hhhhhcC
Q psy5781 91 YRSANGVIIEVTSV---EYCY-QRNWHKQAVTLFDKYKFGHAFSTSLAMPQV------------RPCLFHKF-GHASSSA 153 (231)
Q Consensus 91 ~~~ad~vIlV~dit---Sf~~-l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~------------~~~~~~~~-~~s~~~~ 153 (231)
++++|++|+|||++ +|++ +..|+..+.+... ..+.++++||.|+..+ +.....+. ..+...+
T Consensus 96 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 174 (214)
T 3q3j_B 96 YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174 (214)
T ss_dssp CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence 99999999999999 8998 6899999988764 5566789999999753 22222222 2455556
Q ss_pred C-Ccccccc--ccc-hhhhhhhhc
Q psy5781 154 M-PFPQVWP--CLK-FGHAFSTSL 173 (231)
Q Consensus 154 ~-~~~ev~~--~~n-v~e~f~~~~ 173 (231)
. .+.+++. ..| ++++|...+
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~ 198 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTAS 198 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCcccHHHHHHHHH
Confidence 5 6777776 456 888887765
No 27
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=3.2e-25 Score=178.43 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=124.2
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch-hhhh
Q psy5781 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT-ITQS 89 (231)
Q Consensus 11 ~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~ 89 (231)
..+........+||+++|++|||||||+++|++..+...+.|+.+.++....+.+++..+.+.|||++|++.+.. ++..
T Consensus 13 ~~~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~ 92 (195)
T 3cbq_A 13 NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH 92 (195)
T ss_dssp ---------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHH
T ss_pred cccCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHH
Confidence 334444566789999999999999999999986554434556666677778888999999999999999998765 7888
Q ss_pred cccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--c
Q psy5781 90 YYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--C 162 (231)
Q Consensus 90 ~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~ 162 (231)
|++.+|++|+|||++ +|+++..|+.++..... ...+.++++||.|+...+.....+.. .+...+..+.+++. .
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~ 172 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALH 172 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTT
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCC
Confidence 999999999999999 99999999999988765 35667899999999876554333322 44455566777776 6
Q ss_pred cchhhhhhhhc
Q psy5781 163 LKFGHAFSTSL 173 (231)
Q Consensus 163 ~nv~e~f~~~~ 173 (231)
.|++++|...+
T Consensus 173 ~~v~~lf~~l~ 183 (195)
T 3cbq_A 173 HNTRELFEGAV 183 (195)
T ss_dssp BSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67888887765
No 28
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=1.4e-24 Score=168.60 Aligned_cols=156 Identities=29% Similarity=0.465 Sum_probs=130.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
+...+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45789999999999999999999999999988999999888888899999999999999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
|+|||++ +++.+..|+.++.+......+.++++||.|+...+.....+.. .....+..+.+++. ..|++++|..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999 8999999999998887777778899999998765443222222 34445555666655 5677887776
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 163 i~ 164 (170)
T 1r2q_A 163 IA 164 (170)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 29
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.92 E-value=1.1e-24 Score=170.71 Aligned_cols=157 Identities=25% Similarity=0.375 Sum_probs=130.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.+...+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++.+..++..+++++|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999999999899999999998999999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
+|+|||++ +++.+..|+..+........+.++++||.|+...+.....+.. .....+.++.+++. ..|++++|.
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999998 8999999999998887777778899999999765543322222 34444555666665 567888777
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
...
T Consensus 170 ~l~ 172 (179)
T 2y8e_A 170 RVA 172 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.92 E-value=2.4e-24 Score=167.40 Aligned_cols=156 Identities=28% Similarity=0.385 Sum_probs=130.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
..+.+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999999998999999999888899999999999999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
|+|||++ +++.+..|+..+.+......+.++++||.|+...+........ .....+..+.+++. ..|++++|..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 9999999 8999999999999887777778899999999765443222222 34445555666665 5677777766
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
..
T Consensus 163 i~ 164 (170)
T 1z0j_A 163 IS 164 (170)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 31
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.92 E-value=3.6e-24 Score=167.87 Aligned_cols=156 Identities=28% Similarity=0.512 Sum_probs=124.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.+...+||+++|++|||||||+++++++.+...+.|+++.++....+.+++..+.+.|||++|++++..++..+++++|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999999998899999999988899999999999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcC----CcceeeecccccCCCCCccccccchh-hhh-hcCCCcccccc--ccch
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQVRPCLFHKFG-HAS-SSAMPFPQVWP--CLKF 165 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~-~~~~~~~ev~~--~~nv 165 (231)
+++|||++ +++.+..|+.++..... ...+.++++||.|+.. +.....+.. .+. ..+.++.+++. ..|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999 89999999999988765 5566789999999973 222222221 222 34455666665 5677
Q ss_pred hhhhhhhc
Q psy5781 166 GHAFSTSL 173 (231)
Q Consensus 166 ~e~f~~~~ 173 (231)
+++|...+
T Consensus 162 ~~l~~~l~ 169 (177)
T 1wms_A 162 AAAFEEAV 169 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
No 32
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=4.7e-25 Score=177.32 Aligned_cols=159 Identities=30% Similarity=0.405 Sum_probs=115.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
.......+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.|||++|++++..++..+++++
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 44566789999999999999999999999999888999999888888999999999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC------Cccccccc-hhhhhhcCCCcccccc--c
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ------VRPCLFHK-FGHASSSAMPFPQVWP--C 162 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~------~~~~~~~~-~~~s~~~~~~~~ev~~--~ 162 (231)
|++|+|||++ +++.+..|+..+.+......+.++++||.|+.. .+...... ...+...+.++.+++. .
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g 181 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence 9999999999 899999999999888777777889999999862 22211111 1134444556666665 5
Q ss_pred cchhhhhhhhc
Q psy5781 163 LKFGHAFSTSL 173 (231)
Q Consensus 163 ~nv~e~f~~~~ 173 (231)
.|++++|...+
T Consensus 182 ~gv~el~~~l~ 192 (199)
T 2p5s_A 182 SNIVEAVLHLA 192 (199)
T ss_dssp TTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67777776654
No 33
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.6e-24 Score=172.53 Aligned_cols=161 Identities=34% Similarity=0.521 Sum_probs=128.2
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc
Q psy5781 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92 (231)
Q Consensus 13 ~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 92 (231)
.+..+....+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.|||++|++.+..++..+++
T Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (195)
T 1x3s_A 7 GMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR 86 (195)
T ss_dssp --CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred CcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence 34445667899999999999999999999999999899999999998889999999999999999999999999999999
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchh
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFG 166 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~ 166 (231)
.+|++|+|||++ +++.+..|+.++.+... ...+.++++||.|+.................+..+.+++. ..|++
T Consensus 87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166 (195)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 999999999999 89999999999987664 4556778999999954221111111234444555555555 55677
Q ss_pred hhhhhhc
Q psy5781 167 HAFSTSL 173 (231)
Q Consensus 167 e~f~~~~ 173 (231)
++|...+
T Consensus 167 ~l~~~l~ 173 (195)
T 1x3s_A 167 CAFEELV 173 (195)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=2.4e-24 Score=169.83 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=128.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.|||++|++++..++..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34689999999999999999999999999999999999776 67888899999999999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcCC-cceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFDK-YKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
++|||++ +++.+..|+.++.+.... ..+.++++||.|+...+.....+.. .+...+.++.+++. ..|++++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 9999999 999999999999877653 5567899999999765554333332 55566667777766 567888887
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 162 ~l~ 164 (181)
T 3t5g_A 162 RII 164 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.92 E-value=3.9e-25 Score=173.60 Aligned_cols=156 Identities=21% Similarity=0.292 Sum_probs=126.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECC-eEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDG-KKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
..+.+||+++|++|||||||+++|+++.+...+.||++.++....+.+++ ..+.+.|||++|++.+..++..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999999888889999888888888876 68999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcC---CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFD---KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGH 167 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~---~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e 167 (231)
+|+|||++ +++.+..|+.++.+... ..+..++++||.|+...+.....+.. .....+.++.+++. ..|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 99999999 89999999999987654 34446789999999765443222221 34444556666665 567777
Q ss_pred hhhhhc
Q psy5781 168 AFSTSL 173 (231)
Q Consensus 168 ~f~~~~ 173 (231)
+|...+
T Consensus 163 l~~~l~ 168 (178)
T 2hxs_A 163 CFQKVA 168 (178)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 36
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.92 E-value=1.5e-24 Score=168.67 Aligned_cols=154 Identities=37% Similarity=0.535 Sum_probs=121.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
+.+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++.+..++..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56999999999999999999999999988899999988888888889889999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
|||++ +++.+..|+..+.+......+.++++||.|+.............+...+.++.+++. ..|++++|....
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999 899999999999988877778889999999943222111111234445566666665 567788776654
No 37
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=3.4e-24 Score=166.36 Aligned_cols=154 Identities=29% Similarity=0.424 Sum_probs=127.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||+++|+++.+...+.|+++.++....+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999988899999998888889999999999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC---ccccccch-hhhhhcCCCcccccc--ccchhhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV---RPCLFHKF-GHASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~---~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
|||++ +++.+..|+.++.+......+.++++||.|+... +....... ..+...+.++.+++. ..|++++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999 8999999999999888777778899999998754 22211111 133444555666655 567788777
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
...
T Consensus 162 ~l~ 164 (170)
T 1ek0_A 162 GIG 164 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 38
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.92 E-value=4.3e-24 Score=169.36 Aligned_cols=158 Identities=28% Similarity=0.469 Sum_probs=128.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEE-EEEEEECCe---------EEEEEEeeCCCccccch
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFS-MKTVNIDGK---------KVKLQIWDTAGQERFRT 85 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~---------~~~l~i~D~~G~~~~~~ 85 (231)
.+.++.+||+|+|++|||||||+++|+++.+...+.+|++.++. .+.+.+++. .+.+.|||++|++.+..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 35678899999999999999999999999998889999998887 667777765 78999999999999999
Q ss_pred hhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCccccc
Q psy5781 86 ITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVW 160 (231)
Q Consensus 86 ~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~ 160 (231)
++..+++++|++|+|||++ +++.+..|+..+..... ...+.++++||.|+...+........ .....+.++.+++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999998 89999999999988776 55667899999999765443222222 3444455666666
Q ss_pred c--ccchhhhhhhhc
Q psy5781 161 P--CLKFGHAFSTSL 173 (231)
Q Consensus 161 ~--~~nv~e~f~~~~ 173 (231)
. ..|++++|...+
T Consensus 166 a~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 166 AANGTNISHAIEMLL 180 (195)
T ss_dssp TTTCTTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 5 556777776644
No 39
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.92 E-value=2.8e-24 Score=171.23 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=119.2
Q ss_pred CCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhh
Q psy5781 9 HPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQ 88 (231)
Q Consensus 9 ~~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 88 (231)
++...........+||+++|++|||||||+++|+++.|...+.||.+ ++ .+.+.+++..+.+.||||+|++.+.
T Consensus 8 ~~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~---- 81 (184)
T 3ihw_A 8 SSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ---- 81 (184)
T ss_dssp --------CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH----
T ss_pred CCCCCCCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh----
Confidence 33444445567789999999999999999999999999998999854 44 4888999999999999999998876
Q ss_pred hcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCC--Cccccccchh-hhhhcC-CCccccc
Q psy5781 89 SYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQ--VRPCLFHKFG-HASSSA-MPFPQVW 160 (231)
Q Consensus 89 ~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~--~~~~~~~~~~-~s~~~~-~~~~ev~ 160 (231)
+++++|++++|||++ +|+++..|+.++.+... ...+.++++||.|+.. .+.....+.. .+...+ ..+.+++
T Consensus 82 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 82 -FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp -HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred -eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEec
Confidence 788999999999999 89999999999988764 4556778999999842 2222222222 344443 5666766
Q ss_pred c--ccchhhhhhhhc
Q psy5781 161 P--CLKFGHAFSTSL 173 (231)
Q Consensus 161 ~--~~nv~e~f~~~~ 173 (231)
. ..|++++|...+
T Consensus 161 a~~~~gv~~lf~~l~ 175 (184)
T 3ihw_A 161 ATYGLNVERVFQDVA 175 (184)
T ss_dssp TTTTBTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 6 567888887654
No 40
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.92 E-value=3.1e-24 Score=168.49 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=126.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.....+||+++|++|||||||+++|+++.+...+.+|++.++. ..+.+++..+.+.|||++|++++..++..+++++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3456799999999999999999999999999999999997665 778889989999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
+++|||++ +++.+..|+.++.+.. ....+.++++||.|+...+........ .+...+..+.+++. ..|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999 8899999999996554 456667899999999765543322222 34444555666665 56778877
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
....
T Consensus 164 ~~l~ 167 (181)
T 2fn4_A 164 EQLV 167 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 41
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.92 E-value=7.5e-25 Score=178.10 Aligned_cols=163 Identities=30% Similarity=0.466 Sum_probs=128.7
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe----------EEEEEEeeCCCc
Q psy5781 11 NTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK----------KVKLQIWDTAGQ 80 (231)
Q Consensus 11 ~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~----------~~~l~i~D~~G~ 80 (231)
.+-..++.++.+||+|+|++|||||||+++|+++.+...+.+|++.++..+.+.+++. .+.+.|||++|+
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 15 VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp ------CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred CcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 3344556788999999999999999999999999998889999999888888888776 789999999999
Q ss_pred cccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCC
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMP 155 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~ 155 (231)
+++..++..+++.+|++|+|||++ +++.+..|+.++..... ...+.++++||.|+...+........ .+...+..
T Consensus 95 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP 174 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC
T ss_pred HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc
Confidence 999999999999999999999999 88999999988876554 55667899999999765443222222 44455666
Q ss_pred cccccc--ccchhhhhhhhc
Q psy5781 156 FPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 156 ~~ev~~--~~nv~e~f~~~~ 173 (231)
+.+++. ..|++++|...+
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 777665 567788877655
No 42
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.92 E-value=6.1e-24 Score=169.84 Aligned_cols=159 Identities=18% Similarity=0.284 Sum_probs=124.2
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc
Q psy5781 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92 (231)
Q Consensus 13 ~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 92 (231)
.........+||+++|++|||||||+++|+++.+...+.||++.++. ..+.+++..+.+.|||++|++++..++..+++
T Consensus 15 ~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 15 GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred ccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence 33455678899999999999999999999999999999999996665 56788999999999999999999999999999
Q ss_pred CCcEEEEEEecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCC--ccccccchh-hhhhcCCC-cccccc--c
Q psy5781 93 SANGVIIEVTSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQV--RPCLFHKFG-HASSSAMP-FPQVWP--C 162 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~--~~~~~~~~~-~s~~~~~~-~~ev~~--~ 162 (231)
++|++|+|||++ +|+.+ ..|+..+.+... ..+.++++||.|+... +.....+.. .+...+.. +.+++. .
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAK 172 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCC
Confidence 999999999999 88887 789998887654 4566789999998753 222222221 34444554 666665 6
Q ss_pred cchhhhhhhhc
Q psy5781 163 LKFGHAFSTSL 173 (231)
Q Consensus 163 ~nv~e~f~~~~ 173 (231)
.|++++|...+
T Consensus 173 ~gi~~l~~~l~ 183 (194)
T 3reg_A 173 IGLNEVFEKSV 183 (194)
T ss_dssp BSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67888887654
No 43
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=2.7e-24 Score=166.85 Aligned_cols=153 Identities=24% Similarity=0.430 Sum_probs=124.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
++.+||+++|++|||||||+++++++.+...+.+|++.++....+.+++..+.+.|||++|++++..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999999999999998898889999998999999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
+|||++ +++.+..|+..+.... ...+.++++||.|+...+.....+.. .....+.++.+++. ..|++++|...
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 999999 8999999999998877 45567789999998765443222221 33444555555554 45666666554
No 44
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.91 E-value=6.8e-24 Score=170.69 Aligned_cols=156 Identities=25% Similarity=0.460 Sum_probs=125.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.+...+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.|||++|++.+..++..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45678999999999999999999999999999999999999998888899889999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcC----CcceeeecccccCCCCCccccccchh-hhh-hcCCCcccccc--ccch
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQVRPCLFHKFG-HAS-SSAMPFPQVWP--CLKF 165 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~-~~~~~~~ev~~--~~nv 165 (231)
+|+|||++ +++.+..|+.++..... ...+.++++||.|+... ........ ... ..+.++.+++. ..|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc-ccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999998 89999999999988764 45567899999999732 22111111 222 34455666655 5677
Q ss_pred hhhhhhhc
Q psy5781 166 GHAFSTSL 173 (231)
Q Consensus 166 ~e~f~~~~ 173 (231)
+++|...+
T Consensus 163 ~~l~~~l~ 170 (207)
T 1vg8_A 163 EQAFQTIA 170 (207)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 45
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=3.2e-24 Score=175.42 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=119.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc-cchhhhhccc
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-FRTITQSYYR 92 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~ 92 (231)
......+||+|||++|||||||+++|++. .|...+ ++++.+++.+.+.+++..+.+.+|||+|++. +..+.+.|++
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 45567899999999999999999999964 345544 4577788888889999999999999999887 5667888999
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccch
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKF 165 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv 165 (231)
.+|++|+|||++ ||+.+..|...+.+.. ....+.++++||.|+...+.....+.. .+...+..+.++++ ..|+
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999 9999999999887653 345667899999999765543332222 33444556666666 6788
Q ss_pred hhhhhhhc
Q psy5781 166 GHAFSTSL 173 (231)
Q Consensus 166 ~e~f~~~~ 173 (231)
+++|...+
T Consensus 191 ~elf~~l~ 198 (211)
T 2g3y_A 191 KELFEGIV 198 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=6.7e-24 Score=171.46 Aligned_cols=158 Identities=38% Similarity=0.581 Sum_probs=126.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
....+..+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.|||++|++.+..++..+++.+
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 34456789999999999999999999999999888999999899888999999999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccc-hhhhhhcCCCcccccc--ccchhhh
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHK-FGHASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~-~~~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
|++|+|||++ +++.+..|+..+........+.++++||.|+.. +...... ...+...+.++.+++. ..|++++
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS-CCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999 899999999999988877778889999999943 2221111 1134444556666655 5567777
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|...+
T Consensus 173 ~~~l~ 177 (213)
T 3cph_A 173 FFTLA 177 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 47
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.91 E-value=5.5e-24 Score=172.67 Aligned_cols=157 Identities=17% Similarity=0.292 Sum_probs=122.2
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
.......+||+++|++|||||||+++|+++.|...+.||++.++ ...+.+++..+.+.|||++|++.|..++..+++++
T Consensus 22 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 34467889999999999999999999999999999999998666 46677888899999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCC------------ccccccchh-hhhhcC-CCc
Q psy5781 95 NGVIIEVTSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQV------------RPCLFHKFG-HASSSA-MPF 156 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~------------~~~~~~~~~-~s~~~~-~~~ 156 (231)
|++|+|||++ +|+++ ..|+.++.+... ..+.++++||.|+..+ +.....+.. .+...+ ..+
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 179 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence 9999999999 89998 799999988764 4567799999999743 122111111 333333 466
Q ss_pred cccccc---cchhhhhhhhc
Q psy5781 157 PQVWPC---LKFGHAFSTSL 173 (231)
Q Consensus 157 ~ev~~~---~nv~e~f~~~~ 173 (231)
.+++.. .|++++|...+
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~ 199 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVAT 199 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHH
Confidence 777763 46888886643
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=172.81 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=121.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.....+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.|||++|++++..++..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345789999999999999999999999999999999998666 5667777788999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcCC-cceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFDK-YKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
+|+|||++ +++.+..|+..+.+.... ..+.++++||.|+...+.....+.. .+...+..+.+++. ..|++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 99999999 899999999999876543 4557799999999765544332222 45556667777766 56788888
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 179 ~~l~ 182 (201)
T 3oes_A 179 TKVI 182 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7755
No 49
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.3e-23 Score=167.79 Aligned_cols=155 Identities=19% Similarity=0.290 Sum_probs=122.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.....+||+++|++|||||||+++|+++.|...+.||++..+ ...+.+++..+.+.|||++|++++..++..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345789999999999999999999999999999999998655 4667788889999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCc------------cccccchh-hhhhcCC-Cccc
Q psy5781 97 VIIEVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVR------------PCLFHKFG-HASSSAM-PFPQ 158 (231)
Q Consensus 97 vIlV~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~------------~~~~~~~~-~s~~~~~-~~~e 158 (231)
+|+|||++ +|+.+. .|+..+.+..+ ..+.++++||.|+.... .....+.. .+...+. .+.+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999 899987 89999988755 45677999999997642 11111111 2333333 5556
Q ss_pred ccc--ccchhhhhhhhc
Q psy5781 159 VWP--CLKFGHAFSTSL 173 (231)
Q Consensus 159 v~~--~~nv~e~f~~~~ 173 (231)
++. ..|++++|...+
T Consensus 172 ~Sa~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAI 188 (194)
T ss_dssp CCTTTCTTHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHH
Confidence 655 556777776543
No 50
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=6.7e-24 Score=166.67 Aligned_cols=157 Identities=24% Similarity=0.438 Sum_probs=112.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC-CeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
.....+||+++|++|||||||+++++++.+...+.|+++.++....+.++ +..+.+.|||++|++.+..++..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 35678999999999999999999999999999999999988888888887 66789999999999999999999999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcC----CcceeeecccccCCCCCccc-cccchh-hhh-hcCCCcccccc--cc
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFD----KYKFGHAFSTSLAMPQVRPC-LFHKFG-HAS-SSAMPFPQVWP--CL 163 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~----~~~~~~vv~~k~dl~~~~~~-~~~~~~-~s~-~~~~~~~ev~~--~~ 163 (231)
++|+|||++ +++.+..|+.++..... ...+.++++||.|+...... ...+.. .+. ..+.++.+++. ..
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 999999999 89999999999988764 55667899999999643322 111111 222 34455666655 56
Q ss_pred chhhhhhhhc
Q psy5781 164 KFGHAFSTSL 173 (231)
Q Consensus 164 nv~e~f~~~~ 173 (231)
|++++|...+
T Consensus 164 gi~~l~~~l~ 173 (182)
T 1ky3_A 164 NVDTAFEEIA 173 (182)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7777776653
No 51
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.91 E-value=1.2e-23 Score=163.65 Aligned_cols=153 Identities=13% Similarity=0.106 Sum_probs=111.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch-hhhhcccCCcEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT-ITQSYYRSANGVII 99 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~ad~vIl 99 (231)
.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++++.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 68999999999999999999998887776667777778888889999999999999999998876 78888999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcCC-cceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFDK-YKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|||++ +++.+..|+.++.+.... ..+.++++||.|+...+........ .+...+.++.+++. ..|++++|...
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 99999 899999999999887763 5667799999999765544333332 45555666677666 56788887765
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 162 ~ 162 (169)
T 3q85_A 162 V 162 (169)
T ss_dssp H
T ss_pred H
Confidence 4
No 52
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=2.3e-23 Score=166.05 Aligned_cols=154 Identities=26% Similarity=0.379 Sum_probs=123.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeE---------------------------
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKK--------------------------- 69 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~--------------------------- 69 (231)
++++.+||+|+|++|||||||+++|+++.+...+.+|++.++....+.+++..
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 34567999999999999999999999999999999999988888888887765
Q ss_pred ----------EEEEEeeCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 70 ----------VKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 70 ----------~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
+.+.|||++|++.+..++..+++.+|++|+|||++ +++.+..|+.++.+... .+.++++||.| .
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~ 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-K 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-C
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-c
Confidence 89999999999999999999999999999999999 88999999999988765 66789999999 3
Q ss_pred CCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 137 QVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 137 ~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
..+.....+.. .....+.++.+++. ..|++++|...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLA 199 (208)
T ss_dssp C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Confidence 33333222222 34445555666655 556777776543
No 53
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.91 E-value=5.9e-24 Score=173.53 Aligned_cols=157 Identities=25% Similarity=0.401 Sum_probs=129.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
.......+||+++|++|||||||+++|+.+.+...+.++++.++....+.+++..+.+.|||++|++.+..++..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 44566789999999999999999999998988888999999999988899999999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhh
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
|++|+|||++ +++.+..|+..+.+... ..+.++++||.|+....... .........+..+.+++. ..|++++|
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSSCG-GGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccccH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999 99999999999998765 44567999999997644321 222234445556666655 56777777
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 167 ~~l~ 170 (221)
T 3gj0_A 167 LWLA 170 (221)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 54
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.90 E-value=1.5e-23 Score=164.82 Aligned_cols=148 Identities=17% Similarity=0.149 Sum_probs=113.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++|+++.|.. +.||++. .+.+.+.+++..+.+.|||++|+++ ..|++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSS-EEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcce-eEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 457999999999999999999999999987 8899984 4467888899999999999999986 46788999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcC---CcceeeecccccCCC--CCccccccchh-hhhhc-CCCcccccc--ccchh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFD---KYKFGHAFSTSLAMP--QVRPCLFHKFG-HASSS-AMPFPQVWP--CLKFG 166 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~---~~~~~~vv~~k~dl~--~~~~~~~~~~~-~s~~~-~~~~~ev~~--~~nv~ 166 (231)
+|||++ +|+++..|+..+..... ...+.++++||.|+. ..+.....+.. .+... +.++.+++. ..|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999 89999998777766644 456788999999984 22332222222 22222 455666665 56778
Q ss_pred hhhhhhc
Q psy5781 167 HAFSTSL 173 (231)
Q Consensus 167 e~f~~~~ 173 (231)
++|...+
T Consensus 158 ~lf~~l~ 164 (178)
T 2iwr_A 158 RVFQEVA 164 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 55
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.90 E-value=2.8e-24 Score=172.76 Aligned_cols=155 Identities=18% Similarity=0.276 Sum_probs=89.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeEEEEEEEEECCe--EEEEEEeeCCCccccchhhhhcccC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNIDGK--KVKLQIWDTAGQERFRTITQSYYRS 93 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~~~~pt~~~~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~~ 93 (231)
....+||+|+|++|||||||+++|+++ .+...+.+|++.++....+.+++. .+.+.|||++|++++..++..++++
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 357899999999999999999999998 888889999998888888999887 8999999999999999999999999
Q ss_pred CcEEEEEEecC---cHhhHHHHHHHHHHhcC---CcceeeecccccCCCC-Cccccccchh-hhhhcCCCcccccc---c
Q psy5781 94 ANGVIIEVTSV---EYCYQRNWHKQAVTLFD---KYKFGHAFSTSLAMPQ-VRPCLFHKFG-HASSSAMPFPQVWP---C 162 (231)
Q Consensus 94 ad~vIlV~dit---Sf~~l~~w~~~i~~~~~---~~~~~~vv~~k~dl~~-~~~~~~~~~~-~s~~~~~~~~ev~~---~ 162 (231)
+|++|+|||++ +|+.+..|+.++..... ...+.++++||.|+.. .+.....+.. .....+..+.+++. .
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence 99999999999 89999999999999887 6777889999999976 4443222221 33344445555544 2
Q ss_pred cchhhhhhhh
Q psy5781 163 LKFGHAFSTS 172 (231)
Q Consensus 163 ~nv~e~f~~~ 172 (231)
.|++++|...
T Consensus 177 ~gi~~l~~~i 186 (208)
T 2yc2_C 177 KDADAPFLSI 186 (208)
T ss_dssp ---CHHHHHH
T ss_pred cCHHHHHHHH
Confidence 3566666554
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.90 E-value=1.9e-23 Score=164.70 Aligned_cols=157 Identities=22% Similarity=0.343 Sum_probs=123.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
......+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.|||++|++++..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3345679999999999999999999999999999999998555 466788888899999999999999999999999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcCC-cceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhh
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFDK-YKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
++++|||++ +++.+..|+.++.+.... ..+.++++||.|+...+.....+.. .....+.++.+++. ..|++++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 999999999 889999999999888763 5567799999998765443222222 34444555555555 4567777
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|....
T Consensus 172 ~~~l~ 176 (187)
T 2a9k_A 172 FFDLM 176 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 57
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=167.63 Aligned_cols=121 Identities=23% Similarity=0.314 Sum_probs=96.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
.......+||+++|++|||||||+++|+++.|...+.||++..+ ...+.+++..+.+.|||++|++++..++..+++++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34466789999999999999999999999999999999998554 56778899999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 95 NGVIIEVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|++|+|||++ +|+++. .|+..+....+ ..+.++++||.|+..
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRE 138 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhh
Confidence 9999999999 889986 79999988765 455678999999875
No 58
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=166.96 Aligned_cols=156 Identities=22% Similarity=0.345 Sum_probs=124.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.....+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.|||++|++++..++..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345679999999999999999999999999999999998555 4677888989999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
+++|||++ +++.+..|+..+.+... ...+.++++||.|+...+.....+.. .+...+.++.+++. ..|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 99999999 89999999999988765 35567799999999765443222222 33334445555554 45677776
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 169 ~~l~ 172 (206)
T 2bov_A 169 FDLM 172 (206)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 59
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.90 E-value=2.2e-23 Score=165.42 Aligned_cols=154 Identities=17% Similarity=0.287 Sum_probs=121.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.|...+.||++.++ ...+.+++..+.+.|||++|++.|..++..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999999988999998665 46677888899999999999999999999999999999
Q ss_pred EEEEecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCC------------ccccccchh-hhhhcC-CCcccc
Q psy5781 98 IIEVTSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQV------------RPCLFHKFG-HASSSA-MPFPQV 159 (231)
Q Consensus 98 IlV~dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~------------~~~~~~~~~-~s~~~~-~~~~ev 159 (231)
|+|||++ +|+++ ..|+.++.+..+ ..+.++++||.|+..+ +.....+.. .+...+ ..+.++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 9999999 89998 789999987764 4567799999999753 222212111 333333 466777
Q ss_pred ccc---cchhhhhhhhc
Q psy5781 160 WPC---LKFGHAFSTSL 173 (231)
Q Consensus 160 ~~~---~nv~e~f~~~~ 173 (231)
+.. .|++++|...+
T Consensus 162 Sa~~~~~gi~~l~~~i~ 178 (184)
T 1m7b_A 162 SALQSENSVRDIFHVAT 178 (184)
T ss_dssp BTTTBHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHH
Confidence 663 46888886654
No 60
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.90 E-value=6.1e-23 Score=163.15 Aligned_cols=164 Identities=23% Similarity=0.269 Sum_probs=112.4
Q ss_pred CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhh
Q psy5781 8 DHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT 87 (231)
Q Consensus 8 ~~~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 87 (231)
+++...........+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.|||++|++++..++
T Consensus 8 ~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 86 (190)
T 3con_A 8 SSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR 86 (190)
T ss_dssp -----------CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC--------
T ss_pred ccccccccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 333333333445679999999999999999999999999888889887544 4677888889999999999999999999
Q ss_pred hhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccc-hhhhhhcCCCcccccc-
Q psy5781 88 QSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHK-FGHASSSAMPFPQVWP- 161 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~-~~~s~~~~~~~~ev~~- 161 (231)
..+++.+|++++|||++ +++.+..|+..+..... ...+.++++||.|+... .....+ .......+.++.+++.
T Consensus 87 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~Sa~ 165 (190)
T 3con_A 87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVDTKQAHELAKSYGIPFIETSAK 165 (190)
T ss_dssp ---CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcc-cCCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999 88999999999988765 34567799999998752 211111 1134445556666665
Q ss_pred -ccchhhhhhhhc
Q psy5781 162 -CLKFGHAFSTSL 173 (231)
Q Consensus 162 -~~nv~e~f~~~~ 173 (231)
..|++++|...+
T Consensus 166 ~~~gi~~l~~~l~ 178 (190)
T 3con_A 166 TRQGVEDAFYTLV 178 (190)
T ss_dssp TCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 556777776654
No 61
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.90 E-value=8.9e-24 Score=171.14 Aligned_cols=153 Identities=22% Similarity=0.317 Sum_probs=119.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++|+++.|...+.||++..+ ...+.+++..+.+.|||++|++++..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999999999999998555 466778888999999999999999999999999999999
Q ss_pred EEEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCccc--------cccch-hhhhhcCC-Ccccccc--c
Q psy5781 99 IEVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRPC--------LFHKF-GHASSSAM-PFPQVWP--C 162 (231)
Q Consensus 99 lV~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~--------~~~~~-~~s~~~~~-~~~ev~~--~ 162 (231)
+|||++ +|+++. .|+..+....+ ..+.++++||.|+...+.. ...+. ..+...+. .+.+++. .
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999 888886 89999988765 5567799999998664321 11111 12333342 5566655 5
Q ss_pred cchhhhhhhhc
Q psy5781 163 LKFGHAFSTSL 173 (231)
Q Consensus 163 ~nv~e~f~~~~ 173 (231)
.|++++|...+
T Consensus 165 ~gi~~l~~~l~ 175 (212)
T 2j0v_A 165 QNVKAVFDTAI 175 (212)
T ss_dssp TTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67777776654
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.90 E-value=3.1e-23 Score=160.67 Aligned_cols=153 Identities=22% Similarity=0.295 Sum_probs=122.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||+++|+++.+...+.+|.+..+. ..+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999999999999999986554 667788889999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhc-CCCcccccc--ccchhhhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSS-AMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~-~~~~~ev~~--~~nv~e~f~~ 171 (231)
|||++ +++.+..|+..+.+... ...+.++++||.|+...+........ .+... +.++.+++. ..|++++|..
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 99999 88999999999988654 45567799999999765443222222 22232 455566655 5567777765
Q ss_pred hc
Q psy5781 172 SL 173 (231)
Q Consensus 172 ~~ 173 (231)
.+
T Consensus 161 l~ 162 (167)
T 1c1y_A 161 LV 162 (167)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.90 E-value=3.5e-23 Score=159.98 Aligned_cols=153 Identities=24% Similarity=0.327 Sum_probs=123.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||+++++++.+...+.+|.+. .....+.+++..+.+.|||++|++++..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3589999999999999999999999999889999884 446778889999999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|||++ +++.+..|+.++.+... ...+.++++||.|+...+........ .+...+.++.+++. ..|++++|...
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 99999 88999999999988765 45667899999998765443222222 34445666666666 45677777654
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 161 ~ 161 (167)
T 1kao_A 161 V 161 (167)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.90 E-value=4.1e-23 Score=161.33 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=112.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc--cchhhhhcccCCcEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--FRTITQSYYRSANGV 97 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~~~~~~~ad~v 97 (231)
+.+||+++|++|||||||+++|.++.+...+ ++.+.+++.+.+.+++..+.+.+||++|++. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 5799999999999999999999998876544 5677778888889999999999999999987 667788999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
++|||++ +|+.+..|+..+.+... ...+.++++||.|+...+.....+.. .+...+.++.+++. ..|++++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999 89999999999987643 35567899999999876554332222 33444556666665 567888876
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 162 ~l~ 164 (175)
T 2nzj_A 162 GVV 164 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 65
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.90 E-value=3.7e-23 Score=159.98 Aligned_cols=153 Identities=22% Similarity=0.363 Sum_probs=120.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||+++++++.+...+.+|.+..+ ...+.+++..+.+.|||++|++++..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 369999999999999999999999999888999998555 4567788889999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
|||++ +++.+..|+.++.+... ...+.++++||.|+...+.....+.. .....+.++.+++. ..|++++|...
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 99999 88999999999988776 35667899999999765443322222 33344455555554 55677777654
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 162 ~ 162 (168)
T 1u8z_A 162 M 162 (168)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.90 E-value=9.1e-23 Score=164.27 Aligned_cols=119 Identities=23% Similarity=0.365 Sum_probs=105.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|.++.+...+.||++.++. ..+.+++..+.+.|||++|++++..++..+++++|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 356799999999999999999999999999999999987665 4578888899999999999999999999999999999
Q ss_pred EEEEecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 98 IIEVTSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 98 IlV~dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
|+|||++ +++.+ ..|+..+.+..+ ..+.++++||.|+...
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcC
Confidence 9999999 88888 689988887654 4556799999998764
No 67
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=3.5e-23 Score=165.80 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=123.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+.|||++|++. ..++..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 45679999999999999999999999999999999998655 46678899999999999999988 77889999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--cc-chhhhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CL-KFGHAF 169 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~-nv~e~f 169 (231)
|+|||++ +++.+..|+..+.+... ...+.++++||.|+...+.....+.. .+...+.++.+++. .. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 9999999 89999999999988764 45667899999999765443222222 34444556666665 55 777777
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 183 ~~l~ 186 (196)
T 2atv_A 183 YELC 186 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 68
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.90 E-value=1e-22 Score=161.05 Aligned_cols=154 Identities=25% Similarity=0.314 Sum_probs=121.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++|+++.+...+.+|.+ +.....+.+++..+.+.|||++|++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999999998999987 555577888999999999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
+|||++ +++.+..|+..+.+... ...+.++++||.|+.............+...+.++.+++. ..|++++|...
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999 89999999999988665 3556778999999974332211112244455566666665 55677777654
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 161 ~ 161 (189)
T 4dsu_A 161 V 161 (189)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.90 E-value=1.5e-23 Score=170.56 Aligned_cols=159 Identities=23% Similarity=0.335 Sum_probs=123.8
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC-CeEEEEEEeeCCCccccchhhhhcccC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAGQERFRTITQSYYRS 93 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ 93 (231)
+......+||+++|++|||||||+++|+++.+...+.+|.+.++....+..+ +..+.+.|||++|++.+..++..++++
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 3456678999999999999999999999999988889999877766665554 445899999999999999999999999
Q ss_pred CcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccch-hhhhhcCCCcccccc--ccchhh
Q psy5781 94 ANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKF-GHASSSAMPFPQVWP--CLKFGH 167 (231)
Q Consensus 94 ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~-~~s~~~~~~~~ev~~--~~nv~e 167 (231)
+|++|+|||++ +++++..|+..+........+.++++||.|+...+....... ......+..+.+++. ..|+++
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 164 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence 99999999999 999999999999999888788889999999976544322222 134445555666655 567777
Q ss_pred hhhhhc
Q psy5781 168 AFSTSL 173 (231)
Q Consensus 168 ~f~~~~ 173 (231)
+|...+
T Consensus 165 l~~~l~ 170 (218)
T 4djt_A 165 PFLHLA 170 (218)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 70
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=4.7e-23 Score=164.59 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=112.2
Q ss_pred CCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhh
Q psy5781 9 HPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT 87 (231)
Q Consensus 9 ~~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 87 (231)
++.+.........+||+|+|++|||||||+++|+++.+.. .+.||++. ....+.. ..+.+.||||+|++++..++
T Consensus 5 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~ 80 (199)
T 4bas_A 5 HHHHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEK--GRVAFTVFDMGGAKKFRGLW 80 (199)
T ss_dssp -----------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEE--TTEEEEEEEECCSGGGGGGG
T ss_pred ccccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEe--CCEEEEEEECCCCHhHHHHH
Confidence 3344455667788999999999999999999999999988 88999984 3344443 45889999999999999999
Q ss_pred hhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcC--------CcceeeecccccCCCCCccccccchhhh-----hh
Q psy5781 88 QSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFD--------KYKFGHAFSTSLAMPQVRPCLFHKFGHA-----SS 151 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~--------~~~~~~vv~~k~dl~~~~~~~~~~~~~s-----~~ 151 (231)
..+++++|++|+|||++ +|+.+..|+..+.+... ...+.++++||.|+.............. ..
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD 160 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC
Confidence 99999999999999999 89999999988876532 2566789999999987643211111100 22
Q ss_pred cCCCcccccc--ccchhhhhhhhc
Q psy5781 152 SAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 152 ~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
.+..+.+++. ..|++++|...+
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 161 HPFVIFASNGLKGTGVHEGFSWLQ 184 (199)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CeeEEEEeeCCCccCHHHHHHHHH
Confidence 3334445544 567777777654
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=168.03 Aligned_cols=154 Identities=22% Similarity=0.326 Sum_probs=100.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.+...+.||++..+ ...+.+++..+.+.|||++|++++..++..+++++|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34679999999999999999999999999888999997544 56778899999999999999999999999999999999
Q ss_pred EEEEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCcc------------ccccch-hhhhhcCC-Ccccc
Q psy5781 98 IIEVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRP------------CLFHKF-GHASSSAM-PFPQV 159 (231)
Q Consensus 98 IlV~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~------------~~~~~~-~~s~~~~~-~~~ev 159 (231)
|+|||++ +|+.+. .|+..+.+... ..+.++++||.|+..... ....+. ..+...+. .+.++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999 899986 79999987764 455679999999976531 111111 12333443 55566
Q ss_pred cc--ccchhhhhhhhc
Q psy5781 160 WP--CLKFGHAFSTSL 173 (231)
Q Consensus 160 ~~--~~nv~e~f~~~~ 173 (231)
+. ..|++++|...+
T Consensus 189 SA~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAA 204 (214)
T ss_dssp BTTTTBSHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHH
Confidence 55 567777776644
No 72
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.89 E-value=1.3e-23 Score=167.20 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=117.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC-----------cccceeeEEEEEEE-EECCeEEEEEEeeCCCccc
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK-----------TGNTIGVDFSMKTV-NIDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~-----------~~pt~~~~~~~~~~-~~~~~~~~l~i~D~~G~~~ 82 (231)
.......+||+++|++|||||||+ +++.+.+... +.||++.++....+ .+++..+.+.||||+|+++
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 345678999999999999999999 5666666665 45688877776666 6788899999999999999
Q ss_pred cchhhhhcccCCcEEEEEEecC---------cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcC
Q psy5781 83 FRTITQSYYRSANGVIIEVTSV---------EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSA 153 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~dit---------Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~ 153 (231)
+..++..+++++|++|+|||++ +|+.+..|+.++. ......+.++++||.|+....... .........+
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~~~~~-~~~~~~~~~~ 164 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDALPVE-MVRAVVDPEG 164 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTCCCHH-HHHHHHCTTC
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccccCHH-HHHHHHHhcC
Confidence 9999999999999999999997 6667778887773 233556677999999997642211 1111344445
Q ss_pred C-Ccccccc--ccchhhhhhhhc
Q psy5781 154 M-PFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 154 ~-~~~ev~~--~~nv~e~f~~~~ 173 (231)
. .+.+++. ..|++++|...+
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~ 187 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVS 187 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHH
Confidence 5 6666665 567888876654
No 73
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.89 E-value=7.9e-23 Score=163.97 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=116.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHc--CCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc-cchhhhhcccCCc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRS--GDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-FRTITQSYYRSAN 95 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~--~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~ad 95 (231)
...+||+++|++|||||||+++|++ ..|...+ ++++.+++.+.+.+++..+.+.+||++|++. ++.++..|++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 4579999999999999999999995 3455544 4466678788889999999999999999876 5667888999999
Q ss_pred EEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhh
Q psy5781 96 GVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 96 ~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
++++|||++ ||+.+..|+..+.+... ...+.++++||.|+..++.....+.. .+...+..+.++++ ..|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999 99999999998887643 45667899999999765544333222 23344455666766 6788888
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|...+
T Consensus 163 f~~l~ 167 (192)
T 2cjw_A 163 FEGIV 167 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 74
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.89 E-value=1.2e-22 Score=160.20 Aligned_cols=117 Identities=26% Similarity=0.403 Sum_probs=104.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.|||++|++++..++..+++.+|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 579999999999999999999999999998999998544 5667889999999999999999999999999999999999
Q ss_pred EEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 100 EVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 100 V~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
|||++ +++.+. .|+..+.+..+ ..+.++++||.|+...
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEccccccc
Confidence 99999 888887 79999988765 5566799999998654
No 75
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.89 E-value=1.7e-22 Score=161.80 Aligned_cols=158 Identities=35% Similarity=0.602 Sum_probs=124.4
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCC
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSA 94 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a 94 (231)
..+.+..+||+++|++|||||||++++++..+...+.||++.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 44567789999999999999999999999999989999999999989999999999999999999999999999999999
Q ss_pred cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhh
Q psy5781 95 NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 95 d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
+++++|||++ +++++..|+.++.+.........++++|.|+...+........ .+...+..+.+++. ..+++++
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999998 8889999999887766666677889999998764432222111 23333334444333 3455555
Q ss_pred hhhh
Q psy5781 169 FSTS 172 (231)
Q Consensus 169 f~~~ 172 (231)
|...
T Consensus 183 ~~~l 186 (191)
T 1oix_A 183 FQTI 186 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.3e-22 Score=162.05 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=122.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANG 96 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~ 96 (231)
.....+||+++|++|||||||+++|+++.+...+.+|++..+. ..+..++..+.+.|||++|++++..++..+++.+|+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 3456799999999999999999999999998888999985543 566778889999999999999999999999999999
Q ss_pred EEEEEecC---cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhh
Q psy5781 97 VIIEVTSV---EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 97 vIlV~dit---Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
+|+|||++ +++.+..|+..+.+... ...+.++++||.|+.............+...+..+.+++. ..|++++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 99999999 88899899988887664 3556789999999975222111111134444555666665 56788888
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 163 ~~l~ 166 (199)
T 2gf0_A 163 QELL 166 (199)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.4e-22 Score=163.93 Aligned_cols=119 Identities=22% Similarity=0.356 Sum_probs=98.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.+...+.||++.++. ..+.+++..+.+.|||++|++++..++..+++++|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 456799999999999999999999999999889999986665 4478888899999999999999999999999999999
Q ss_pred EEEEecC---cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 98 IIEVTSV---EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 98 IlV~dit---Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
|+|||++ +++.+ ..|+..+....+ ..+.++++||.|+...
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhcc
Confidence 9999999 88888 689998887654 4556799999998654
No 78
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.89 E-value=1.4e-22 Score=157.22 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=98.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++|.+..+. .+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999976654 3556776544 46778899999999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ +|+.+..|+.++.+... ...+.++++||.|+...+........ .+...+.++.+++. ..|++++|....
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 9999 99999999999987643 45567799999999876554333322 44455566666665 567788776654
No 79
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.89 E-value=3.4e-22 Score=160.66 Aligned_cols=155 Identities=35% Similarity=0.589 Sum_probs=121.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
++.+||+++|++|||||||++++++..+...+.||++.++....+.++|..+.+.+||++|++.++.++..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56799999999999999999999999998889999998898889999999999999999999999989999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFSTS 172 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~~ 172 (231)
+|||++ +++++..|+.++...........++++|.|+...+........ .+...+..+.+++. ..+++++|...
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999 8999999999887766566677899999999764433222211 33333444444433 44566666554
Q ss_pred c
Q psy5781 173 L 173 (231)
Q Consensus 173 ~ 173 (231)
+
T Consensus 163 ~ 163 (199)
T 2f9l_A 163 L 163 (199)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.89 E-value=1.2e-22 Score=164.09 Aligned_cols=120 Identities=26% Similarity=0.375 Sum_probs=103.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.+...+.+|++ +.....+.+++..+.+.|||++|++++..++..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 45679999999999999999999999999999999997 45567778888999999999999999999999999999999
Q ss_pred EEEEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 98 IIEVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 98 IlV~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
|+|||++ +++.+. .|+..+.... ...+.++++||.|+....
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 9999999 899986 8999998876 455677999999987643
No 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.89 E-value=4.3e-22 Score=153.41 Aligned_cols=152 Identities=23% Similarity=0.289 Sum_probs=121.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEE
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIE 100 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV 100 (231)
.+||+++|++|||||||+++++++.+...+.++.+.. ....+..++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999999988888998744 456778888899999999999999999999999999999999
Q ss_pred EecC---cHhhHHHHHHHHHHhcCC-cceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 101 VTSV---EYCYQRNWHKQAVTLFDK-YKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 101 ~dit---Sf~~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
||++ +++.+..|+..+.+.... ..+.++++||.|+.................+.++.+++. ..|++++|...+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999 889999999999887653 556779999999876222111112234445556666665 556777776543
No 82
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.3e-22 Score=156.22 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=122.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
..+||+++|++|||||||+++++++.+...+.+|++..+. ..+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3689999999999999999999999998888899885553 566778888999999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhhhhhh
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGHAFST 171 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e~f~~ 171 (231)
|||++ +++.+..|+..+.+... ...+.++++||.|+...+........ .....+.++.+++. ..|++++|..
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 99999 88899999998887754 34567799999998765443222211 33444555566655 5678888877
Q ss_pred hcc
Q psy5781 172 SLA 174 (231)
Q Consensus 172 ~~~ 174 (231)
.+.
T Consensus 161 l~~ 163 (172)
T 2erx_A 161 LLN 163 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 83
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.88 E-value=1.2e-23 Score=165.52 Aligned_cols=153 Identities=22% Similarity=0.311 Sum_probs=103.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
.+.+||+++|++|||||||+++|+.+.+...+.||++..+. ..+.+++..+.+.|||++|++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45699999999999999999999999999889999985543 44566777889999999999999999999999999999
Q ss_pred EEEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCccc----------cccc-hhhhhhcCC-Ccccccc-
Q psy5781 99 IEVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVRPC----------LFHK-FGHASSSAM-PFPQVWP- 161 (231)
Q Consensus 99 lV~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~----------~~~~-~~~s~~~~~-~~~ev~~- 161 (231)
+|||++ +++++. .|+..+.+... ..+.++++||.|+...+.. ...+ ...+...+. .+.+++.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999998 888987 79999988765 5567799999998665431 1111 113333443 5556655
Q ss_pred -ccchhhhhhhhc
Q psy5781 162 -CLKFGHAFSTSL 173 (231)
Q Consensus 162 -~~nv~e~f~~~~ 173 (231)
..|++++|...+
T Consensus 164 ~~~gi~~l~~~l~ 176 (182)
T 3bwd_D 164 SQENVKGVFDAAI 176 (182)
T ss_dssp TCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 567777776543
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=1.4e-22 Score=160.26 Aligned_cols=124 Identities=21% Similarity=0.278 Sum_probs=98.0
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhh
Q psy5781 10 PNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQS 89 (231)
Q Consensus 10 ~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~ 89 (231)
+.........+.+||+++|++|||||||+++|+++.+ ..+.+|++.. ...+.+++ +.+.|||++|++++..++..
T Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~ 84 (181)
T 2h17_A 10 HSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNT 84 (181)
T ss_dssp -----------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGG
T ss_pred ccCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHH
Confidence 3444455566789999999999999999999999988 6678888844 35666666 88999999999999999999
Q ss_pred cccCCcEEEEEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCC
Q psy5781 90 YYRSANGVIIEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 90 ~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~ 138 (231)
+++++|++|+|||++ +++.+..|+..+.+.. ....+.++++||.|+...
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 999999999999999 7999999998887653 345667899999999764
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.88 E-value=2.9e-22 Score=159.55 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=100.9
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc
Q psy5781 13 FQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92 (231)
Q Consensus 13 ~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 92 (231)
.........+||+|+|++|||||||+++|+++.+...+.||++.++. .+..+ .+.+.|||++|++++..++..+++
T Consensus 14 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~ 89 (188)
T 1zd9_A 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCR 89 (188)
T ss_dssp -----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHT
T ss_pred ccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHc
Confidence 33444567899999999999999999999999998889999996654 34444 478999999999999999999999
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCC
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~ 138 (231)
++|++|+|||++ +++.+..|+.++.+... ...+.++++||.|+...
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 999999999998 88899899888876432 45667899999999764
No 86
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.87 E-value=1e-22 Score=161.73 Aligned_cols=118 Identities=18% Similarity=0.286 Sum_probs=90.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeEEEEEEEEE---CCeEEEEEEeeCCCccccchhhhhcccCCc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG--DFVEKTGNTIGVDFSMKTVNI---DGKKVKLQIWDTAGQERFRTITQSYYRSAN 95 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~--~f~~~~~pt~~~~~~~~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 95 (231)
.+||+++|++|||||||+++|++. .+...+.+|++.++..+.+.+ ++..+.+.+||++|+++|..+++.|+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999984 677778899998887766654 346789999999999999999999999999
Q ss_pred EEEEEEecC----cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 96 GVIIEVTSV----EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 96 ~vIlV~dit----Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
++++|||++ +++.+..|+.++..... ..+.++++||.|+...+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 128 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEK 128 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccch
Confidence 999999998 68899999999977653 45677889999987644
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=4.6e-22 Score=158.33 Aligned_cols=121 Identities=17% Similarity=0.299 Sum_probs=99.9
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHcCC-CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc
Q psy5781 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGD-FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR 92 (231)
Q Consensus 14 ~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~-f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 92 (231)
........+||+++|++|||||||+++|+++. +...+.+|++ +....+.+++ +.+.|||++|++++..++..+++
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~ 89 (190)
T 2h57_A 14 LVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYK 89 (190)
T ss_dssp -------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGG
T ss_pred cccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHh
Confidence 34445678999999999999999999999887 6777889998 5556677765 78999999999999999999999
Q ss_pred CCcEEEEEEecC---cHhhHHHHHHHHHHhcC---CcceeeecccccCCCCC
Q psy5781 93 SANGVIIEVTSV---EYCYQRNWHKQAVTLFD---KYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 93 ~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~---~~~~~~vv~~k~dl~~~ 138 (231)
++|++|+|||++ +++.+..|+..+.+... ...+.++++||.|+...
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 999999999999 79999999998877654 45667899999999764
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.86 E-value=2.9e-21 Score=152.86 Aligned_cols=116 Identities=25% Similarity=0.422 Sum_probs=99.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++++++. ...+.||++ +....+.+++ +.+.||||+|++++..++..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999888 777889998 4445666665 78999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCc
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~ 139 (231)
+|||++ +++.+..|+.++.+... ...+.++++||.|+....
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 999999 79999999988876532 456678999999997653
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.2e-21 Score=155.57 Aligned_cols=150 Identities=18% Similarity=0.208 Sum_probs=110.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++|+++.+. .+.||++ +....+.+++ +.+.|||++|++++..++..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999887 6788988 4445666765 88999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCCccccccchhh----hhhcCCCcccccc--ccchhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQVRPCLFHKFGH----ASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~~~~~~~~~~~----s~~~~~~~~ev~~--~~nv~e~ 168 (231)
+|||++ +|+.+..|+.++.+.. ....+.++++||.|+............. ....+..+.+++. ..|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence 999999 7999999999987754 2456678999999997632211100000 1112234445554 5678888
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|...+
T Consensus 169 ~~~l~ 173 (187)
T 1zj6_A 169 LEWMM 173 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87655
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.86 E-value=1.5e-21 Score=150.99 Aligned_cols=112 Identities=23% Similarity=0.456 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEE
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEV 101 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ 101 (231)
+||+++|++|||||||+++|+++.|.. +.||++ +....+..+ .+.+.|||++|+++++.++..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 699999999999999999999988875 678888 334445544 478999999999999999999999999999999
Q ss_pred ecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCC
Q psy5781 102 TSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 102 dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~ 138 (231)
|++ +|+.+..|+.++.+.. ....+.++++||.|+...
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 999 7899989998886643 345667899999999764
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.86 E-value=6.6e-21 Score=148.19 Aligned_cols=116 Identities=25% Similarity=0.389 Sum_probs=98.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++|.++.+.. +.||++. ....+.+++ +.+.+||++|++.+..++..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 356999999999999999999999998864 7788874 445666664 78999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCc
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~ 139 (231)
+|||++ +|+.+..|+..+.+... ...+.++++||.|+....
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 999999 78999888888766543 456678999999997653
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.86 E-value=4.5e-21 Score=153.21 Aligned_cols=114 Identities=17% Similarity=0.239 Sum_probs=97.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
.+.+||+++|++|||||||+++|.++.+. .+.||++. ....+.+++ +.+.+||++|++.++.++..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999998875 47888885 346777777 88999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCC
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~ 137 (231)
+|||++ +|+++..|+.++.+.. ....+.++++||.|+..
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 999999 8999999999987653 34566789999999976
No 93
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.86 E-value=1.6e-21 Score=156.94 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=90.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
.+.+||+++|++|||||||+++|.++.+. .+.||++.+ ...+.+++ +.+.+|||+|+++++.++..|++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34689999999999999999999998875 478888854 45677777 88999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCC
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~ 137 (231)
+|||++ +|+++..|+.++.+.. ....+.++++||.|+..
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 999999 8999999999887653 34566789999999975
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.86 E-value=1.6e-21 Score=154.52 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=110.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++|.++.+ ..+.||+| +....+.+++ +.+.+||++|++.++.++..+++++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4579999999999999999999998865 45788888 4455667764 78999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCCccccccchhh----hhhcCCCcccccc--ccchhhh
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQVRPCLFHKFGH----ASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~~~~~~~~~~~----s~~~~~~~~ev~~--~~nv~e~ 168 (231)
+|||++ +|+.+..|+.++.+.. ....+.++++||.|+............. ....+..+.++++ ..|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHH
Confidence 999999 7889988988875543 3456678999999997654311000000 0111223444444 5677777
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|...+
T Consensus 169 ~~~l~ 173 (181)
T 1fzq_A 169 MNWVC 173 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 95
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.76 E-value=4.4e-23 Score=166.23 Aligned_cols=119 Identities=26% Similarity=0.395 Sum_probs=104.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.|||++|++++..++..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 45779999999999999999999999999888899987444 46667788889999999999999999999999999999
Q ss_pred EEEEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 98 IIEVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 98 IlV~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
|+|||++ +++.+. .|+..+..... ..+.++++||.|+...
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 149 (204)
Confidence 9999998 899886 89988877655 5567799999999764
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=4e-21 Score=153.80 Aligned_cols=116 Identities=22% Similarity=0.406 Sum_probs=92.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+.+.+.. +.||++ +....+..++ +.+.|||++|++++..++..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999999988874 678887 4445566654 8899999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCC
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~ 138 (231)
|+|||++ +++.+..|+.++.+.. ....+.++++||.|+...
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999999 7888889988886543 245667899999999764
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.85 E-value=1.1e-20 Score=162.49 Aligned_cols=118 Identities=26% Similarity=0.406 Sum_probs=104.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.|||++|++.+..++..+++++|++|
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3458999999999999999999999999999999998544 567788999999999999999999999999999999999
Q ss_pred EEEecC---cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 99 IEVTSV---EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 99 lV~dit---Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+|||++ +|+.+. .|+..+..... ..+.++++||.|+...
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 999999 888887 79999988765 5567799999998653
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=5.6e-21 Score=150.54 Aligned_cols=115 Identities=24% Similarity=0.382 Sum_probs=94.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||+++++++.+ ..+.||++ +....+.+++ +.+.+||++|++.+..++..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999998888 56788888 4445666665 88999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhc-CCcceeeecccccCCCCC
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLF-DKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~dl~~~ 138 (231)
+|||++ +++.+..|+.++.+.. ....+.++++||.|+...
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 999998 8899999988887654 355667899999999764
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=1.7e-21 Score=156.18 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=84.9
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEE--E-CCeEEEEEEeeCCCccccchh
Q psy5781 10 PNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVN--I-DGKKVKLQIWDTAGQERFRTI 86 (231)
Q Consensus 10 ~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~--~-~~~~~~l~i~D~~G~~~~~~~ 86 (231)
+...+.....+.+||+++|++|||||||++++.++ +... ++++.++....+. + ++..+.+.|||++|+++|...
T Consensus 9 ~~~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (196)
T 3llu_A 9 SGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP 85 (196)
T ss_dssp -----------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT
T ss_pred CCCCCCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh
Confidence 34444556778899999999999999999977754 4443 4555444443333 3 366789999999999998877
Q ss_pred h---hhcccCCcEEEEEEecC--cHhhHH---HHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 87 T---QSYYRSANGVIIEVTSV--EYCYQR---NWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 87 ~---~~~~~~ad~vIlV~dit--Sf~~l~---~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
. ..+++++|++|+|||++ +++.+. .|+.++.. .....+.++++||.|+..
T Consensus 86 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~-~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 86 TFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK-VNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp TCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH-HCTTCEEEEEEECGGGSC
T ss_pred hhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHh-cCCCCcEEEEEeccccCc
Confidence 6 89999999999999999 344444 55555433 334566779999999865
No 100
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.84 E-value=1.4e-20 Score=146.78 Aligned_cols=148 Identities=11% Similarity=0.047 Sum_probs=107.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc------hhhhhccc--
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR------TITQSYYR-- 92 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~-- 92 (231)
.+||+++|++|||||||+++|++..+...+.|+...+.....+.+++ ..+.+|||+|++.+. .+...|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998877655556665566666677766 579999999998775 34566775
Q ss_pred CCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhhh
Q psy5781 93 SANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAFS 170 (231)
Q Consensus 93 ~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f~ 170 (231)
++|++++|||+++++....|+.++.+ ...+.++++||.|+...+.........+...+.++.++++ ..|++++|.
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLME---MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHHHh---cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHH
Confidence 89999999999988888889888865 2456779999999865433222222244455566767766 667888887
Q ss_pred hhc
Q psy5781 171 TSL 173 (231)
Q Consensus 171 ~~~ 173 (231)
..+
T Consensus 158 ~l~ 160 (165)
T 2wji_A 158 AIS 160 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.83 E-value=2.5e-21 Score=167.38 Aligned_cols=145 Identities=13% Similarity=0.050 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch---hhhhcccCCcE
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVE---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT---ITQSYYRSANG 96 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~---~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~ad~ 96 (231)
||+++|++|||||||++++.++.+.. .+.||+|.++.. ++ ..++++||||+||++|+. .++.|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999988664433 367999977753 23 348999999999999974 46899999999
Q ss_pred EEEEEecC-cH-hhHHHH---HHHHHHhcCCcceeeecccccCCCCCc-------cccccchh-hhhh----cCCCcccc
Q psy5781 97 VIIEVTSV-EY-CYQRNW---HKQAVTLFDKYKFGHAFSTSLAMPQVR-------PCLFHKFG-HASS----SAMPFPQV 159 (231)
Q Consensus 97 vIlV~dit-Sf-~~l~~w---~~~i~~~~~~~~~~~vv~~k~dl~~~~-------~~~~~~~~-~s~~----~~~~~~ev 159 (231)
+|+|||++ .+ +.+..| ++++.+.. +..+..+++||.|+.... .....+.. .+.. .+..+.|.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 99999999 33 333333 44444433 355677899999997642 11111111 2222 34556666
Q ss_pred cc-ccchhhhhhhhc
Q psy5781 160 WP-CLKFGHAFSTSL 173 (231)
Q Consensus 160 ~~-~~nv~e~f~~~~ 173 (231)
+. ..|+.++|+..+
T Consensus 155 SAkd~nV~eAFs~iv 169 (331)
T 3r7w_B 155 SIFDHSIYEAFSRIV 169 (331)
T ss_dssp CSSSSHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHH
Confidence 55 568999998876
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.83 E-value=9.7e-21 Score=153.38 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=90.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe-EEEEEEeeCCCccccch-hhhhcccCCc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK-KVKLQIWDTAGQERFRT-ITQSYYRSAN 95 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~-~~~~~~~~ad 95 (231)
....+||+++|++|||||||+++|+++.|...+.++. .++. .+.+++. .+.+.||||+|++++.. ++..|++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 4567999999999999999999999999988886555 3444 3666644 68899999999999988 8899999999
Q ss_pred EEEEEEecCc----HhhHHH-HHHHHHHh--cCCcceeeecccccCCCCCc
Q psy5781 96 GVIIEVTSVE----YCYQRN-WHKQAVTL--FDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 96 ~vIlV~ditS----f~~l~~-w~~~i~~~--~~~~~~~~vv~~k~dl~~~~ 139 (231)
++|+|||+++ +..+.. |...+... .....+.++++||.|+....
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 9999999983 334444 44444332 23456788999999997654
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.83 E-value=1e-21 Score=164.69 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=114.5
Q ss_pred CCCCceeeEEEEEcCC---------CCcHHHHHHHHHc---CCCCCCcccce-eeEEEEEEEE--------------ECC
Q psy5781 15 DDSYDFLFKVVLIGDC---------GVGKTCVVHRFRS---GDFVEKTGNTI-GVDFSMKTVN--------------IDG 67 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~---------~vGKTSLl~~~~~---~~f~~~~~pt~-~~~~~~~~~~--------------~~~ 67 (231)
.......+||+|+|++ |||||||+++|++ +.|...+.||+ +.++..+.+. +++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3345677999999999 9999999999999 66777788876 5555433322 567
Q ss_pred eEEEEEEee-----------------------CCCccccchhhhhccc---------------------CCcEEEEEEec
Q psy5781 68 KKVKLQIWD-----------------------TAGQERFRTITQSYYR---------------------SANGVIIEVTS 103 (231)
Q Consensus 68 ~~~~l~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~ad~vIlV~di 103 (231)
..+.+.||| ++|+++|..++..|++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 889999999 7788888888888988 79999999999
Q ss_pred C-----cHhhHHHHHHHHHHh-cCCcceeeecccccCCCCCccccccchh-hhhh-cCCCcccccc--ccchhhhhhhhc
Q psy5781 104 V-----EYCYQRNWHKQAVTL-FDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASS-SAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 104 t-----Sf~~l~~w~~~i~~~-~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~-~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
+ ||+.+..|+.++.+. .....+.++++||.|+...+.. .+.. .+.. .+..+.+++. ..|++++|...+
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 7 788899999999876 3456677899999998654432 1111 2222 2556667765 567888887654
No 104
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.83 E-value=1e-20 Score=150.23 Aligned_cols=115 Identities=23% Similarity=0.399 Sum_probs=97.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
...+||+++|++|||||||++++..+.+.. +.||++ +....+..++ +.+.+|||+|++++..++..+++++|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999999888765 678887 4445566664 78999999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCC
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~ 138 (231)
+|||++ +++.+..|+.++.+... ...+.++++||.|+...
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 999999 78988888888766432 45667899999999765
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=159.59 Aligned_cols=151 Identities=16% Similarity=0.228 Sum_probs=105.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+|+|++|||||||+++|.++.+... .||++..+. .+..++ +.+.||||+|++.+..++..+++.+|++
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEETT--EEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 44678999999999999999999999988764 478875543 444444 7899999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchhh----hhhcCCCcccccc--ccchhh
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFGH----ASSSAMPFPQVWP--CLKFGH 167 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~~----s~~~~~~~~ev~~--~~nv~e 167 (231)
|+|||++ +|+.+..|+.++.+... ...+.++++||.|+............. ....+.++.+++. ..|+++
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 9999998 89999888877765443 456678999999998654311111000 0111122344444 567788
Q ss_pred hhhhhc
Q psy5781 168 AFSTSL 173 (231)
Q Consensus 168 ~f~~~~ 173 (231)
+|...+
T Consensus 317 l~~~l~ 322 (329)
T 3o47_A 317 GLDWLS 322 (329)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.7e-19 Score=164.46 Aligned_cols=147 Identities=18% Similarity=0.284 Sum_probs=112.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.+.. +.||++.++. .+..++ +.+.||||+|++.+..++..+++++|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 4567999999999999999999999998765 6689885544 444444 7899999999999999999999999999
Q ss_pred EEEEecC---cHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCccccccchhhhhhcCCC--------cccccc--cc
Q psy5781 98 IIEVTSV---EYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMP--------FPQVWP--CL 163 (231)
Q Consensus 98 IlV~dit---Sf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~--------~~ev~~--~~ 163 (231)
|+|||++ +|+.+..|+.++.+... ...+.++++||.|+...... .......+.. +.+++. ..
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP----HEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH----HHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH----HHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 9999999 89999999988876543 45667899999999764321 1112222222 444444 56
Q ss_pred chhhhhhhhc
Q psy5781 164 KFGHAFSTSL 173 (231)
Q Consensus 164 nv~e~f~~~~ 173 (231)
|++++|....
T Consensus 470 gi~~l~~~l~ 479 (497)
T 3lvq_E 470 GLYEGLTWLT 479 (497)
T ss_dssp THHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7888887765
No 107
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.81 E-value=9e-20 Score=144.32 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=113.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc------hhhhhccc-
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR------TITQSYYR- 92 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~- 92 (231)
+.+||+++|++|||||||+++|++..+...+.|++..+.....+..++ ..+.+|||+|++.+. .++..|++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 569999999999999999999998776555667666667767777766 789999999998774 45666775
Q ss_pred -CCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhh
Q psy5781 93 -SANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 93 -~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
.++++++|+|.++++.+..|+.++.+ ...+.++++||.|+...+.........+...+.++.+++. ..|++++|
T Consensus 84 ~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (188)
T 2wjg_A 84 EKPDLVVNIVDATALERNLYLTLQLME---MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELK 160 (188)
T ss_dssp HCCSEEEEEEEGGGHHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHH
T ss_pred cCCCEEEEEecchhHHHHHHHHHHHHh---cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHH
Confidence 49999999999999999999988865 3455678899999865433222222245555667777776 56788888
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
...+
T Consensus 161 ~~i~ 164 (188)
T 2wjg_A 161 KAIS 164 (188)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 108
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.80 E-value=1.6e-19 Score=141.40 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=94.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGV 97 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 97 (231)
....+||+++|++|||||||+++|+++.+...+.+++..++....+.+++. .+.||||+|++.+..++..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 356789999999999999999999999998887777776676677778774 577999999999999999999999999
Q ss_pred EEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 98 IIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 98 IlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
|+|||++.. ....+++.+........+.++++||.|+...
T Consensus 83 i~v~d~~~~-~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 83 ILVVAADDG-VMPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEEETTCC-CCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred EEEEECCCC-CcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 999999821 1123333444444456668899999999764
No 109
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.80 E-value=1.5e-19 Score=155.49 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=109.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcC--CCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCcccc-----chhhhhcc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSG--DFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF-----RTITQSYY 91 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~--~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~ 91 (231)
..+||+++|++|||||||+++|+++ .+. ..+.+|++.++. .+.+++ .+.+.|||++|++.+ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987 333 356788886665 344544 589999999999988 77889999
Q ss_pred cCCcEEEEEEecC---cHhhHHHHHHHHHHhc--CCcceeeecccccCCCC--Ccc----ccccch-hhhhhcC---CCc
Q psy5781 92 RSANGVIIEVTSV---EYCYQRNWHKQAVTLF--DKYKFGHAFSTSLAMPQ--VRP----CLFHKF-GHASSSA---MPF 156 (231)
Q Consensus 92 ~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~--~~~~~~~vv~~k~dl~~--~~~----~~~~~~-~~s~~~~---~~~ 156 (231)
+++|++|+|||++ +|+++..|...+.... ....+.++++||.|+.. .+. ....+. ..+...+ .++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999999 8999987766655443 33566779999999986 332 111111 1344443 455
Q ss_pred ccccc-ccchhhhhhhhc
Q psy5781 157 PQVWP-CLKFGHAFSTSL 173 (231)
Q Consensus 157 ~ev~~-~~nv~e~f~~~~ 173 (231)
.+++. ..++.++|...+
T Consensus 159 ~~tSa~~~~i~e~~~~iv 176 (307)
T 3r7w_A 159 FPTSIWDESLYKAWSQIV 176 (307)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEeeecCChHHHHHHHHH
Confidence 55554 456777776654
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.79 E-value=8.9e-20 Score=167.88 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=110.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEE------EEE--CCeEEEEEEeeCCCccccchhhh
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKT------VNI--DGKKVKLQIWDTAGQERFRTITQ 88 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~------~~~--~~~~~~l~i~D~~G~~~~~~~~~ 88 (231)
.....+||+++|++|||||||+++++++.|...+.||++.++..+. +.+ ++..+.+.|||++|++.+..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567799999999999999999999999999999999997776442 122 34468899999999999999999
Q ss_pred hcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccch
Q psy5781 89 SYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKF 165 (231)
Q Consensus 89 ~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv 165 (231)
.+++++|++|+|||+++++.+..|+.++....++ .+.++++||.|+...+........ .....+.++.++++ ..|+
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~-~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi 195 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGK-SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGV 195 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSS-CCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----C
T ss_pred HHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCC-CCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCH
Confidence 9999999999999999889999999999988754 456699999999765543222221 33344455666655 5567
Q ss_pred hhhhhhhc
Q psy5781 166 GHAFSTSL 173 (231)
Q Consensus 166 ~e~f~~~~ 173 (231)
+++|...+
T Consensus 196 ~eL~~~l~ 203 (535)
T 3dpu_A 196 ESIAKSLK 203 (535)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=8e-18 Score=129.35 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc-------cchhhhhcccC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER-------FRTITQSYYRS 93 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~ 93 (231)
.||+++|++|||||||++++.++.+. ....++...+.....+..++. .+.|||++|+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 69999999999999999999988753 222333334556666777764 788999999887 34456778999
Q ss_pred CcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCC-Ccccccc--ccchhhhh
Q psy5781 94 ANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAM-PFPQVWP--CLKFGHAF 169 (231)
Q Consensus 94 ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~-~~~ev~~--~~nv~e~f 169 (231)
+|++|+|||++ .+.....|+.++.+. ...+.++++||.|+..... .... .. +.+. .+.+++. ..|++++|
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~--~~-~~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHEL-YLGP--LY-GLGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGG-GCGG--GG-GGSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchH-hHHH--HH-hCCCCCeEEEecccCCChHHHH
Confidence 99999999999 455554444444333 3455779999999976521 1111 12 3333 5566655 56777777
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
....
T Consensus 154 ~~l~ 157 (161)
T 2dyk_A 154 EAIW 157 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=2.8e-18 Score=134.91 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=86.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh--------hhh
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQS 89 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~ 89 (231)
..+||+++|++|||||||+++|++..+ ...+ ++...++....+.+++. .+.+|||+|++++... ...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI-AGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-TTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCC-CCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence 357999999999999999999998764 2333 33334566677888874 4789999998753211 124
Q ss_pred cccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 90 YYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 90 ~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+++.+|++++|||++ +++ ...|+.++.+......+.++++||.|+..
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 688999999999998 666 45788888877666677889999999854
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.74 E-value=3.7e-18 Score=135.74 Aligned_cols=149 Identities=13% Similarity=0.028 Sum_probs=93.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC----------ccccchhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG----------QERFRTIT 87 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~ 87 (231)
....+||+|+|++|||||||+++++++.|...+.++.+.+.......+++ .+.||||+| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 45679999999999999999999999988777778877655555555554 589999999 78888888
Q ss_pred hhcccCC---cEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhh----hcCCCcc
Q psy5781 88 QSYYRSA---NGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHAS----SSAMPFP 157 (231)
Q Consensus 88 ~~~~~~a---d~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~----~~~~~~~ 157 (231)
..+++.+ |++++|||++ ++.... +.+.+.. ...+.++++||.|+............... ..+..+.
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 8888877 9999999998 555432 2222222 44567799999999765432211111111 1233444
Q ss_pred cccc--ccchhhhhhhhc
Q psy5781 158 QVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 158 ev~~--~~nv~e~f~~~~ 173 (231)
+++. ..|++++|....
T Consensus 173 ~~Sa~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp ECCTTTCTTHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHH
Confidence 5544 556777776543
No 114
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=2.3e-18 Score=139.69 Aligned_cols=115 Identities=13% Similarity=0.203 Sum_probs=94.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccC
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS 93 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~---~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 93 (231)
.....+||+++|++|||||||+++|+++.+.. .+.|+++.++ ..+.+.|||++|++.++..+..|++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 35577999999999999999999999988755 3556665333 34678999999999999888888887
Q ss_pred ----CcEEEEEEecC----cHhhHHHHHHHHHHhc----CCcceeeecccccCCCCCcc
Q psy5781 94 ----ANGVIIEVTSV----EYCYQRNWHKQAVTLF----DKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 94 ----ad~vIlV~dit----Sf~~l~~w~~~i~~~~----~~~~~~~vv~~k~dl~~~~~ 140 (231)
+|++|+|||++ +++.+..|+.++.... ....+.++++||.|+...+.
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999997 8888989998887653 35667889999999987654
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=1.3e-17 Score=136.67 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=94.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc------cc----cchhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ------ER----FRTIT 87 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~------~~----~~~~~ 87 (231)
....+||+|+|++|||||||+++|+++.+.....+....+.....+..++ +.+.||||+|+ +. +.. .
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 102 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-I 102 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-H
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-H
Confidence 35679999999999999999999999887532222222233333444444 67999999998 33 222 2
Q ss_pred hhcccCCcEEEEEEecC---cHh--hHHHHHHHHHHhcCCcceeeecccccCCCCCccccccc---h-hhhhhcC--CCc
Q psy5781 88 QSYYRSANGVIIEVTSV---EYC--YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHK---F-GHASSSA--MPF 156 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit---Sf~--~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~---~-~~s~~~~--~~~ 156 (231)
..++..+|++|+|||++ +|+ ....|+..+.... ...+.++++||.|+...+...... . ......+ ..+
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 34578899999999999 554 2235555554432 255677999999997654432211 1 1222232 345
Q ss_pred ccccc--ccchhhhhhhhc
Q psy5781 157 PQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 157 ~ev~~--~~nv~e~f~~~~ 173 (231)
.+++. ..|++++|...+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~ 200 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITAC 200 (228)
T ss_dssp EECCTTTCTTHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHH
Confidence 55555 556777776654
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.73 E-value=1.1e-17 Score=140.58 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=109.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch------hhhhcc-
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT------ITQSYY- 91 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~- 91 (231)
.+.+||+++|++|||||||+++|++..+.....|.+..+.....+..++ ..+.|||++|+..+.. +...|+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999998776543445444445444555544 7899999999987764 335566
Q ss_pred -cCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhh
Q psy5781 92 -RSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 92 -~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
..+|++++|+|.+++++...|...+.+. ..+.++++||.|+...+.........+...+.++.+++. ..|++++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el 157 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLYLLLEILEM---EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEEL 157 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHHHHHHHHTT---TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHH
T ss_pred hcCCCEEEEEeCCCchhhHHHHHHHHHhc---CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHH
Confidence 5899999999999777766777777553 456779999999865444333333356677778877776 6678888
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|....
T Consensus 158 ~~~i~ 162 (258)
T 3a1s_A 158 KEKIV 162 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.72 E-value=4.7e-18 Score=134.29 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=99.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC-----------ccccchhhhh
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG-----------QERFRTITQS 89 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~ 89 (231)
.+||+++|++|||||||+++|+++.+...+.|++. +....+..+ .+.+||++| ++.+..++..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc--ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 37999999999999999999999998877777664 333344444 589999999 7778888888
Q ss_pred cccC-CcEEEEEEecC---cHhhH-HHHHHH--------HHH-hcCCcceeeecccccCCCCCccccccchhhhhhcCCC
Q psy5781 90 YYRS-ANGVIIEVTSV---EYCYQ-RNWHKQ--------AVT-LFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMP 155 (231)
Q Consensus 90 ~~~~-ad~vIlV~dit---Sf~~l-~~w~~~--------i~~-~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~ 155 (231)
|++. ++++++||+++ +++++ ..|... +.+ ......+.++++||.|+....... ....+...+.+
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~ 152 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEV--INFLAEKFEVP 152 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHH--HHHHHHHHTCC
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHH--HHHHHHHhhhh
Confidence 8877 77666666655 88887 678753 323 233456678999999998754111 11134444443
Q ss_pred c-------ccccc--ccchhhhhhhhc
Q psy5781 156 F-------PQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 156 ~-------~ev~~--~~nv~e~f~~~~ 173 (231)
+ .+++. ..|++++|...+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 2 34443 556777776544
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.72 E-value=8.6e-18 Score=142.28 Aligned_cols=147 Identities=13% Similarity=0.082 Sum_probs=106.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc------hhhhhccc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR------TITQSYYR 92 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~ 92 (231)
..+||+++|++|||||||+++|++..+ ...+ | |.++..+...++. .+.+.||||+|+..+. .+.+.|+.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~-p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~ 77 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNW-P--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL 77 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS-S--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCC-C--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh
Confidence 358999999999999999999998753 3333 3 3333334445555 5789999999998775 45667776
Q ss_pred --CCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhh
Q psy5781 93 --SANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHA 168 (231)
Q Consensus 93 --~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~ 168 (231)
++|++|+|||+++.++...|...+.+ ...+.++++||.|+...+.........+...+.++.+++. ..|++++
T Consensus 78 ~~~~d~vi~V~D~t~~e~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 78 SQRADSILNVVDATNLERNLYLTTQLIE---TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp TTCCSEEEEEEEGGGHHHHHHHHHHHHH---TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred cCCCCEEEEEecCCchHhHHHHHHHHHh---cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 69999999999977777778777765 3456778999999865433322223355666777777776 6778888
Q ss_pred hhhhc
Q psy5781 169 FSTSL 173 (231)
Q Consensus 169 f~~~~ 173 (231)
|...+
T Consensus 155 ~~~i~ 159 (272)
T 3b1v_A 155 VKKAA 159 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 119
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.7e-18 Score=135.66 Aligned_cols=114 Identities=13% Similarity=0.199 Sum_probs=86.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccC-
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE---KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRS- 93 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~---~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~- 93 (231)
....+||+++|++|||||||++++.++.+.. .+.|+.+.++ ..+.+.+||++|++.+...+..+++.
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3567999999999999999999999987654 2334433222 34678999999999988888888776
Q ss_pred ---CcEEEEEEecC----cHhhHHHHHHHHHHhc----CCcceeeecccccCCCCCcc
Q psy5781 94 ---ANGVIIEVTSV----EYCYQRNWHKQAVTLF----DKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 94 ---ad~vIlV~dit----Sf~~l~~w~~~i~~~~----~~~~~~~vv~~k~dl~~~~~ 140 (231)
+|++|+|||++ +++.+..|+.++.... ....+.++++||.|+.....
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999997 7778888888876653 34667889999999986544
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.69 E-value=5.9e-17 Score=128.27 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=97.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC----------ccccchh
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG----------QERFRTI 86 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~ 86 (231)
.....+||+++|++|||||||+++|+++.+ ..+.++.+.+........+. .+.+|||+| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 345678999999999999999999998874 44566666544444444443 477999999 7778888
Q ss_pred hhhcccCC---cEEEEEEecC-----cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccc--cchh-hhhh-cCC
Q psy5781 87 TQSYYRSA---NGVIIEVTSV-----EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLF--HKFG-HASS-SAM 154 (231)
Q Consensus 87 ~~~~~~~a---d~vIlV~dit-----Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~--~~~~-~s~~-~~~ 154 (231)
+..|++.+ |++++|+|.+ ....+..|+... ..+.++++||.|+........ .... .... ...
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 88888877 9999999988 223333454433 456778999999875332111 1111 1111 223
Q ss_pred Ccccccc--ccchhhhhhhhc
Q psy5781 155 PFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 155 ~~~ev~~--~~nv~e~f~~~~ 173 (231)
++.+++. ..|++++|....
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~ 189 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLIS 189 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHHH
Confidence 5555554 567777776543
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.69 E-value=7.7e-17 Score=135.91 Aligned_cols=150 Identities=11% Similarity=0.017 Sum_probs=110.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch------hhhhcc--
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT------ITQSYY-- 91 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~-- 91 (231)
+.+||+++|++|||||||++++++..+.....|++..+.....+..++ ..+.|||++|+..+.. +...|+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 368999999999999999999999887555667676677777777776 4589999999987765 566666
Q ss_pred cCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhhhh
Q psy5781 92 RSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGHAF 169 (231)
Q Consensus 92 ~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e~f 169 (231)
.++|++|+|+|.+.++....|...+.+.. ..+.++++||.|+...+.........+...+.++.+++. ..|+++.|
T Consensus 80 ~~~d~vi~v~D~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMRNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred cCCcEEEEEecCCcchhhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence 68999999999997666666666665532 155778999999765443333333356666777777765 55677777
Q ss_pred hhhc
Q psy5781 170 STSL 173 (231)
Q Consensus 170 ~~~~ 173 (231)
....
T Consensus 158 ~~i~ 161 (271)
T 3k53_A 158 RMIA 161 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.68 E-value=7.6e-17 Score=135.26 Aligned_cols=149 Identities=11% Similarity=0.023 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch----------hhhhcc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT----------ITQSYY 91 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~~~~~ 91 (231)
.||+++|++|||||||++++++..+.....|++..+.....+..++. .+.||||+|...+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988765444566666677777777774 789999999887653 566777
Q ss_pred --cCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchhh
Q psy5781 92 --RSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFGH 167 (231)
Q Consensus 92 --~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~e 167 (231)
+++|++|+|+|.+..+....|...+. ....+.++++||.|+...+.........+...+.++.+++. ..|+++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~---~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF---ELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPA 156 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT---TSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH---HcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 89999999999996554444444443 23566778999999866544333333356667778877776 678899
Q ss_pred hhhhhccC
Q psy5781 168 AFSTSLAM 175 (231)
Q Consensus 168 ~f~~~~~~ 175 (231)
.|......
T Consensus 157 l~~~i~~~ 164 (256)
T 3iby_A 157 LQQSLLHC 164 (256)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 88887644
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.68 E-value=7.5e-17 Score=136.47 Aligned_cols=149 Identities=13% Similarity=0.023 Sum_probs=108.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch----------hhhhc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT----------ITQSY 90 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~~~~ 90 (231)
.++|+++|.+|||||||++++++..+.....|.+..+.....+..++ ..+.||||+|+..+.. +...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999998876544455555566666666665 4678899999887662 23344
Q ss_pred c--cCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccchh
Q psy5781 91 Y--RSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLKFG 166 (231)
Q Consensus 91 ~--~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~nv~ 166 (231)
+ +.+|++|+|+|.+.++....|...+.+. ..+.++++||.|+...+.........+...+.++.+++. ..|++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLEL---GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIE 157 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH---TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHH
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHhc---CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 3 7999999999999766666666666554 456778999999865444333333356667777877776 67788
Q ss_pred hhhhhhcc
Q psy5781 167 HAFSTSLA 174 (231)
Q Consensus 167 e~f~~~~~ 174 (231)
+.|.....
T Consensus 158 el~~~i~~ 165 (274)
T 3i8s_A 158 ALKLAIDR 165 (274)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88877653
No 124
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.67 E-value=7.2e-17 Score=144.39 Aligned_cols=167 Identities=14% Similarity=0.030 Sum_probs=103.8
Q ss_pred CCCCCCCCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCc
Q psy5781 2 SSSLTNDHPNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80 (231)
Q Consensus 2 s~~~~~~~~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~ 80 (231)
++++..+..|+.+.......+||+++|+.|+|||||+++|++..+. ....+....+.....+.+++. ..+.||||+|+
T Consensus 15 ~h~lee~~~msm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~ 93 (423)
T 3qq5_A 15 SHMLEDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGL 93 (423)
T ss_dssp ---------CCCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSST
T ss_pred cccccchhhCccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCC
Confidence 3444445555544445667899999999999999999999988763 222233333455566666654 37899999999
Q ss_pred cccchh-------hhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcC
Q psy5781 81 ERFRTI-------TQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSA 153 (231)
Q Consensus 81 ~~~~~~-------~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~ 153 (231)
.++..+ ...+++.+|++|+|||++..+....|+..+.+. ..+.++++||.|+....... .........+
T Consensus 94 ~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~~-~~~~l~~~~g 169 (423)
T 3qq5_A 94 DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAEE-LKGLYESRYE 169 (423)
T ss_dssp TCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCTH-HHHHSSCCTT
T ss_pred CcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHHH-HHHHHHHHcC
Confidence 877655 345788999999999997445556788887765 45677999999998765431 1111333445
Q ss_pred CCcccccc--ccchhhhhhhhc
Q psy5781 154 MPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 154 ~~~~ev~~--~~nv~e~f~~~~ 173 (231)
.++.+++. ..|++++|....
T Consensus 170 ~~v~~vSAktg~gI~eL~~~L~ 191 (423)
T 3qq5_A 170 AKVLLVSALQKKGFDDIGKTIS 191 (423)
T ss_dssp CCCCCCSSCCTTSTTTHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 55666655 457777776654
No 125
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=126.38 Aligned_cols=121 Identities=13% Similarity=0.162 Sum_probs=80.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCccc--ceeeEEEEEEEEECCeEEEEEEeeCCC-----------cccc
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGN--TIGVDFSMKTVNIDGKKVKLQIWDTAG-----------QERF 83 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~p--t~~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~ 83 (231)
.....+||+++|++|||||||++++++..+.....+ ++..+.....+.+++ ..+.||||+| ++.+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345689999999999999999999999887655544 333344445566666 5689999999 3345
Q ss_pred chhhhhcccCCcEEEEEEecCcHh-hHHHHHHHHHHhcCC--cceeeecccccCCCCCc
Q psy5781 84 RTITQSYYRSANGVIIEVTSVEYC-YQRNWHKQAVTLFDK--YKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 84 ~~~~~~~~~~ad~vIlV~ditSf~-~l~~w~~~i~~~~~~--~~~~~vv~~k~dl~~~~ 139 (231)
......+++.+|++|+|+|++.+. ....|+..+.+.+.. ..+.++++||.|+....
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 555666778899999999998221 234555555544432 23567889999876543
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.63 E-value=9.1e-17 Score=130.52 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=82.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEEC-CeEEEEEEeeCCC----------ccccchh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNID-GKKVKLQIWDTAG----------QERFRTI 86 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~-~~~~~l~i~D~~G----------~~~~~~~ 86 (231)
....+||+|+|+.|||||||+++|+++.+.....++.+.........+. .....+.||||+| ++.+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3457899999999999999999999887433333333333333334443 3346789999999 4555666
Q ss_pred hhhcccC---CcEEEEEEecC-cHhhH-HHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 87 TQSYYRS---ANGVIIEVTSV-EYCYQ-RNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 87 ~~~~~~~---ad~vIlV~dit-Sf~~l-~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
...|++. +|++|+|+|.+ .+... ..|+..+.+ ...+.++++||.|+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG---GCCCEEEEEECGGGSCHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh---cCCCEEEEEeccccCChh
Confidence 7777776 78899999999 33333 345555543 445677899999987643
No 127
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.62 E-value=3.9e-15 Score=124.91 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=86.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhccc----
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYR---- 92 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~---- 92 (231)
...+||+++|+.|||||||+++|+++.+ ...+.++. .......+..++ ..+.||||+|+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG-LRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-C-CCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-eeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHH
Confidence 3579999999999999999999998874 33343332 234444555666 58999999999887665555444
Q ss_pred -----CCcEEEEEEecC--cHhhH-HHHHHHHHHhcCCcc--eeeecccccCCCCC
Q psy5781 93 -----SANGVIIEVTSV--EYCYQ-RNWHKQAVTLFDKYK--FGHAFSTSLAMPQV 138 (231)
Q Consensus 93 -----~ad~vIlV~dit--Sf~~l-~~w~~~i~~~~~~~~--~~~vv~~k~dl~~~ 138 (231)
.+|++++|+|++ .+... ..|++.+.+.+.... +.++++||.|+...
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999998 56555 488988888776543 56788999998643
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.62 E-value=1.5e-15 Score=126.58 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=76.1
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeE--EEEEEEEECCeEEEEEEeeCCCc--------cccc
Q psy5781 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVD--FSMKTVNIDGKKVKLQIWDTAGQ--------ERFR 84 (231)
Q Consensus 15 ~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~--~~~~~~~~~~~~~~l~i~D~~G~--------~~~~ 84 (231)
.......+||+++|.+|||||||++++++..+.....++.+.+ .....+..++ ..+.||||+|. +++.
T Consensus 15 ~~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ 92 (247)
T 3lxw_A 15 YFQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGC 92 (247)
T ss_dssp -----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTS
T ss_pred cccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHH
Confidence 3344568999999999999999999999877644333322222 2233445555 66899999996 3332
Q ss_pred hhhhhc----ccCCcEEEEEEecCcHhhH-HHHHHHHHHhcCC---cceeeecccccCCCCC
Q psy5781 85 TITQSY----YRSANGVIIEVTSVEYCYQ-RNWHKQAVTLFDK---YKFGHAFSTSLAMPQV 138 (231)
Q Consensus 85 ~~~~~~----~~~ad~vIlV~ditSf~~l-~~w~~~i~~~~~~---~~~~~vv~~k~dl~~~ 138 (231)
.....+ .+.+|++|+|+|++.+... ..+++.+.+.+.. ..+.+++.||.|+...
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 93 EERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 222222 3899999999999944333 3445555555443 4567788999998653
No 129
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.61 E-value=1.9e-15 Score=129.96 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=101.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCC--CcccceeeEEEEEEEEECCeEEEEEEeeCCCccccc----------
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVE--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR---------- 84 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------- 84 (231)
.+...-.|+++|.+|||||||++++++..+.. ....|.. +........+ ....+.||||+|+.++.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~-~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR-MRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCcee-eEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 45567899999999999999999999987642 2222221 2222233333 14778999999986544
Q ss_pred hhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcC--CCccc
Q psy5781 85 TITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSA--MPFPQ 158 (231)
Q Consensus 85 ~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~--~~~~e 158 (231)
.....+++.+|++++|+|++ +++....|++.+.+ ...+.++++||.|+............ .....+ ..+..
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 56678899999999999999 78888888887765 34567789999998732221111111 223322 34444
Q ss_pred ccc--ccchhhhhhhhc
Q psy5781 159 VWP--CLKFGHAFSTSL 173 (231)
Q Consensus 159 v~~--~~nv~e~f~~~~ 173 (231)
++. ..|++++|...+
T Consensus 161 vSA~~g~gv~~L~~~l~ 177 (308)
T 3iev_A 161 ISALKGANLDELVKTIL 177 (308)
T ss_dssp CBTTTTBSHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHH
Confidence 444 567888887765
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.61 E-value=9.7e-16 Score=139.07 Aligned_cols=147 Identities=10% Similarity=-0.045 Sum_probs=81.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhh--------hh
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTIT--------QS 89 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~ 89 (231)
..+||+++|.+|||||||+++|++... ...+ |....+.....+.+++ +.+.||||+|+.++...+ ..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~-~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHM-PGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 358999999999999999999998753 3333 3333466667777877 679999999998765443 44
Q ss_pred cccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc--ccc
Q psy5781 90 YYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP--CLK 164 (231)
Q Consensus 90 ~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~--~~n 164 (231)
+++.+|++|+|||++ +++++..+..-+.... ..+.++++||.|+........ .........++.+++. ..|
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTTTBS
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECCCCC
Confidence 789999999999999 7765444443333322 466779999999987654321 0011111123344443 455
Q ss_pred hhhhhhhhc
Q psy5781 165 FGHAFSTSL 173 (231)
Q Consensus 165 v~e~f~~~~ 173 (231)
+++.|....
T Consensus 385 I~eL~~~i~ 393 (476)
T 3gee_A 385 IDTLKQHMG 393 (476)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 666665544
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.60 E-value=1.8e-15 Score=135.90 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=83.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeEEEEEEEEECCeEEEEEEeeCCCc----------cccch
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV--EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ----------ERFRT 85 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~ 85 (231)
.+..+||+++|++|||||||+++++++.+. ..+ +....+.....+..++. .+.||||+|+ +.|..
T Consensus 172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~-~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~ 248 (436)
T 2hjg_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV-AGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSV 248 (436)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHH
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCC-CCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHH
Confidence 345799999999999999999999988763 333 33334555567777774 4899999998 44554
Q ss_pred hhh-hcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 86 ITQ-SYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 86 ~~~-~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
++. .+++.+|++|+|||++ ++++. .|...+.+ .....++++||.|+.....
T Consensus 249 ~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 249 LRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCT
T ss_pred HHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcch
Confidence 443 4788999999999999 66665 57766653 3566789999999876443
No 132
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.59 E-value=9.5e-15 Score=121.94 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=80.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCC-CCCCcccc-eeeEEEEEEEEECCeEEEEEEeeCCCccccch----------
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD-FVEKTGNT-IGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT---------- 85 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~-f~~~~~pt-~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------- 85 (231)
....+||+|+|.+|||||||++++++.. +...+.++ +..+.....+..++ ..+.||||+|...+..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 4567999999999999999999999876 56555554 33344445556666 5689999999865432
Q ss_pred -hhhhcccCCcEEEEEEecCcHhhHH-HHHHHHHHhcC---CcceeeecccccCCCC
Q psy5781 86 -ITQSYYRSANGVIIEVTSVEYCYQR-NWHKQAVTLFD---KYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 86 -~~~~~~~~ad~vIlV~ditSf~~l~-~w~~~i~~~~~---~~~~~~vv~~k~dl~~ 137 (231)
....+++.+|++|+|||++.+.... .+...+.+... ..++++++.||.|+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 2234778999999999998443333 23344444433 2344555556999874
No 133
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.59 E-value=4e-15 Score=125.27 Aligned_cols=118 Identities=16% Similarity=0.052 Sum_probs=83.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhh-------h
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV--EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQ-------S 89 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~ 89 (231)
...+||+++|.+|||||||++++++..+. ..+.++. .....+.++.....+.||||+|..++..+.. .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t---~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~ 113 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG---PRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKS 113 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC---SSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc---eeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHH
Confidence 35799999999999999999999987753 2222222 2222233333347899999999876643322 1
Q ss_pred --cccCCcEEEEEEecC--cHhhH-HHHHHHHHHhcCCc--ceeeecccccCCCCCc
Q psy5781 90 --YYRSANGVIIEVTSV--EYCYQ-RNWHKQAVTLFDKY--KFGHAFSTSLAMPQVR 139 (231)
Q Consensus 90 --~~~~ad~vIlV~dit--Sf~~l-~~w~~~i~~~~~~~--~~~~vv~~k~dl~~~~ 139 (231)
..+.+|++++|||++ ++... ..|++.+.+.+... ...++++||.|+....
T Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 234799999999998 66655 48888888776654 4677899999986543
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.58 E-value=2.6e-15 Score=135.55 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=84.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCC-CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC----------ccccchh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD-FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG----------QERFRTI 86 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~-f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~ 86 (231)
....+||+++|++|||||||+++|++.. +.....++...+.....+..++. .+.||||+| ++.|..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 4567999999999999999999999764 22223333334555566777774 789999999 6777776
Q ss_pred hh-hcccCCcEEEEEEecC-cHh-hHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 87 TQ-SYYRSANGVIIEVTSV-EYC-YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 87 ~~-~~~~~ad~vIlV~dit-Sf~-~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
+. .+++.+|++|+|+|.+ .+. ....|...+.+ .....++++||.|+...+.
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH---TTCEEEEEEECGGGSCCCS
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH---cCCCEEEEEEChhcCCCch
Confidence 55 4789999999999999 433 33456655554 3466778999999876544
No 135
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.58 E-value=1.9e-14 Score=123.30 Aligned_cols=149 Identities=11% Similarity=-0.009 Sum_probs=95.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCC--CcccceeeEEEEEEEEECCeEEEEEEeeCCCccc--------cchhhh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE--KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--------FRTITQ 88 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~ 88 (231)
.+..+|+++|.+|||||||++++++.++.. ....|.. +.....+..+ ...+.||||+|..+ +.....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHH
Confidence 456789999999999999999999987742 2222332 2221222333 47899999999876 445567
Q ss_pred hcccCCcEEEEEEecC-cHhhHHHHH-HHHHHhcCCcceeeecccccCCCCCccccccchhhhhhc--CCCcccccc--c
Q psy5781 89 SYYRSANGVIIEVTSV-EYCYQRNWH-KQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSS--AMPFPQVWP--C 162 (231)
Q Consensus 89 ~~~~~ad~vIlV~dit-Sf~~l~~w~-~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~--~~~~~ev~~--~ 162 (231)
.+++.+|++++|||++ .+.....|+ +.+.+.. ...+.++++||.|+...... .. ...... ..++..+++ .
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-~~--~~~~~~~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLV-GKVPILLVGNKLDAAKYPEE-AM--KAYHELLPEAEPRMLSALDE 157 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-HH--HHHHHTSTTSEEEECCTTCH
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-HH--HHHHHhcCcCcEEEEeCCCC
Confidence 7899999999999998 444445665 4444432 35667799999998754320 01 111111 111233333 4
Q ss_pred cchhhhhhhhcc
Q psy5781 163 LKFGHAFSTSLA 174 (231)
Q Consensus 163 ~nv~e~f~~~~~ 174 (231)
.|++++|.....
T Consensus 158 ~gv~~l~~~l~~ 169 (301)
T 1wf3_A 158 RQVAELKADLLA 169 (301)
T ss_dssp HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
Confidence 678888877663
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.57 E-value=5.9e-15 Score=132.66 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc---------cchhhhhcc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER---------FRTITQSYY 91 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~ 91 (231)
-+|+++|.+|||||||+++|++++.. ....|.+..+.....+.+++. .+.||||+|++. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999987642 122333334555667777774 578999999764 334567789
Q ss_pred cCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 92 RSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 92 ~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+.+|++|+|||++ .+.....|+.++.+. ...+.++++||.|+..
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLR 124 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCcc
Confidence 9999999999998 333333333332222 2455779999999853
No 137
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=2e-15 Score=136.30 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=80.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCC--------ccccchhhhhc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG--------QERFRTITQSY 90 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G--------~~~~~~~~~~~ 90 (231)
....+|+++|.+|||||||+++++++++. ...++.|.+.......++.....+.||||+| ++++......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 34679999999999999999999988764 2445566555555555555556899999999 77788888999
Q ss_pred ccCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 91 YRSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 91 ~~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
++.+|++|+|+|.+ .+.....|+.++.+. ..++.++++||.|+...
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----
T ss_pred HhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhh
Confidence 99999999999998 666666666555432 45667789999998754
No 138
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.53 E-value=2.5e-14 Score=123.80 Aligned_cols=83 Identities=12% Similarity=0.102 Sum_probs=60.2
Q ss_pred cceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC-------------cHhhHHHHHHHHHH
Q psy5781 52 NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-------------EYCYQRNWHKQAVT 118 (231)
Q Consensus 52 pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-------------Sf~~l~~w~~~i~~ 118 (231)
||+|+ ....+.+++ +.++|||++||+.++.+|..|+++++++|+|||++ +++....|+..+.+
T Consensus 153 ~TiGi--~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 153 PTTGI--IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CCCSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred ceeeE--EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 55663 334555554 88999999999999999999999999999999764 34444445555443
Q ss_pred hc-CCcceeeecccccCCCCC
Q psy5781 119 LF-DKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 119 ~~-~~~~~~~vv~~k~dl~~~ 138 (231)
.. ....+.++++||.|+...
T Consensus 229 ~~~~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 229 YPWFQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp SGGGTTCEEEEEEECHHHHHH
T ss_pred hhccCCceEEEEEECchhhhh
Confidence 22 244567899999998653
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=1e-14 Score=131.03 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=71.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc--------ccchhhhhccc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE--------RFRTITQSYYR 92 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~ 92 (231)
..+|+++|.+|||||||+++|++.++. .+.++.|.+.......+......+.||||+|++ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 369999999999999999999987653 244555554443333443334679999999985 56667788999
Q ss_pred CCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 93 SANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 93 ~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.+|++|+|+|++ .......|+.++.+ ....+.++++||.|+...
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~--~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILY--RTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHT--TCCSCEEEEEECCCC---
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCccc
Confidence 999999999998 32333344444332 245667899999998754
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.51 E-value=1.4e-13 Score=120.50 Aligned_cols=149 Identities=11% Similarity=-0.015 Sum_probs=98.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCC-Ccc-cceeeEEEEEEEEECCeEEEEEEeeCCCccccc---------hhh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTG-NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR---------TIT 87 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~~-pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~ 87 (231)
...++|+++|.+|||||||++++++..+.. .+. .|.. .....+..++ ..+.+|||+|..... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRG--INVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSC--EEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeec--eeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHH
Confidence 456899999999999999999999876432 121 2222 3333334443 678999999985432 112
Q ss_pred hhcccCCcEEEEEEecC-----cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCCcccccc-
Q psy5781 88 QSYYRSANGVIIEVTSV-----EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMPFPQVWP- 161 (231)
Q Consensus 88 ~~~~~~ad~vIlV~dit-----Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~~~ev~~- 161 (231)
..+...+|++++|+|++ +++....|+.++..... ..+.++++||.|+....... .........+.++.+++.
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENIK-RLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHHH-HHHHHHHHTTCCCEECBTT
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHHH-HHHHHHHhcCCCeEEEeCC
Confidence 23455799999999987 57788899999988765 56677999999997643210 001122234455666663
Q ss_pred -ccchhhhhhhhc
Q psy5781 162 -CLKFGHAFSTSL 173 (231)
Q Consensus 162 -~~nv~e~f~~~~ 173 (231)
..|++++|....
T Consensus 319 ~g~gi~~l~~~i~ 331 (357)
T 2e87_A 319 KGTGIDLVKEEII 331 (357)
T ss_dssp TTBTHHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 566777766543
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.50 E-value=1.2e-14 Score=131.35 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=73.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh--------hhh
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQS 89 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~ 89 (231)
..+||+++|.+|||||||++++++..+ ...+ ++...++....+.+++ ..+.||||+|..++... ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-PGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC-TTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 458999999999999999999998654 3333 4443455556677777 56799999998665433 234
Q ss_pred cccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 90 YYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 90 ~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
+++.+|++++|||.+ +.+. ..|++.+.. .+.++++||.|+.....
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~-----~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQVKH-----RPLILVMNKIDLVEKQL 347 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHHTT-----SCEEEEEECTTSSCGGG
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhccC-----CcEEEEEECCCCCcchh
Confidence 788999999999999 3332 455555532 46778999999876543
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.48 E-value=3.5e-13 Score=119.78 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=99.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEE------------------------CCeEEEE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI------------------------DGKKVKL 72 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~------------------------~~~~~~l 72 (231)
.+...+||+++|+.++|||||+++|++...... .+ +...++.. ......+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LG--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI 77 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SE--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cC--ccccceeeccccccccceecccccccccccccccccceE
Confidence 455679999999999999999999997543321 11 11111100 1123789
Q ss_pred EEeeCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhh
Q psy5781 73 QIWDTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHA 149 (231)
Q Consensus 73 ~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s 149 (231)
.||||+|+++|......++..+|++|+|+|.+ ++....+|+..+..... +..++++||.|+...........+..
T Consensus 78 ~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 78 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp EEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999 47788888877655432 34678999999876432111111111
Q ss_pred hh------cCCCcccccc--ccchhhhhhhhc
Q psy5781 150 SS------SAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 150 ~~------~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
.. ...++..++. ..|+++.+....
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~ 187 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIE 187 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHH
Confidence 11 1334455544 567777777654
No 143
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.47 E-value=2.2e-14 Score=125.59 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=55.9
Q ss_pred eEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC-------------cHhhHHHHHHHHHHhc-CCcceeeeccccc
Q psy5781 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-------------EYCYQRNWHKQAVTLF-DKYKFGHAFSTSL 133 (231)
Q Consensus 68 ~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-------------Sf~~l~~w~~~i~~~~-~~~~~~~vv~~k~ 133 (231)
+.+.++||||+||+.++.+|..|+++++++|+|||++ +|+++..|++.+.+.. ....++++++||.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6799999999999999999999999999999999984 5666667777776543 2456678999999
Q ss_pred CCCC
Q psy5781 134 AMPQ 137 (231)
Q Consensus 134 dl~~ 137 (231)
|+..
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9854
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.47 E-value=5.8e-14 Score=127.54 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=81.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc-ccch--------hhhh
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-RFRT--------ITQS 89 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~-~~~~--------~~~~ 89 (231)
.+||+++|.+|||||||++++++..+ ..++..|. .++....+.+++ ..+.||||+|.. ++.. ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT-~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT-RDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCS-SCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCee-eeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 38999999999999999999998753 44444443 356667778877 568999999987 6542 2356
Q ss_pred cccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 90 YYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 90 ~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+++.+|++|+|||++ +++..+-| +.+ ...+.++++||.|+...
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~il-~~l-----~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCC
T ss_pred HhhcccEEEEEecCCCCCCHHHHHHH-HHh-----cCCCEEEEEECcccccc
Confidence 789999999999998 66554322 222 24567799999999653
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.47 E-value=2e-13 Score=122.73 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=82.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCC-------------------------------CCCCcccceeeEEEEEEEEEC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD-------------------------------FVEKTGNTIGVDFSMKTVNID 66 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~-------------------------------f~~~~~pt~~~~~~~~~~~~~ 66 (231)
....++|+++|..++|||||+++|+... +..+..+.+..+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 4567999999999999999999995431 111222334444444445554
Q ss_pred CeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--c----HhhHHHHHHHHHHhcCCcce-eeecccccCCCC
Q psy5781 67 GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--E----YCYQRNWHKQAVTLFDKYKF-GHAFSTSLAMPQ 137 (231)
Q Consensus 67 ~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--S----f~~l~~w~~~i~~~~~~~~~-~~vv~~k~dl~~ 137 (231)
+ ..+.||||+|+++|......+++.+|++|||+|.+ - |+....+.+.+......... .++++||.|+..
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 4 68999999999999998899999999999999998 2 22223444444433333333 678899999853
No 146
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.47 E-value=1.2e-13 Score=120.05 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=60.6
Q ss_pred cceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC-------------cHhhHHHHHHHHHH
Q psy5781 52 NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV-------------EYCYQRNWHKQAVT 118 (231)
Q Consensus 52 pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-------------Sf~~l~~w~~~i~~ 118 (231)
+|+|+.. ..+.++ .+.++|||++||+.++.+|..|+++++++|+|||++ ++++...|+..+.+
T Consensus 147 ~TiGi~~--~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 147 KTTGIHE--YDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp CCCSCEE--EEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred ceeeeEE--EEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 4566333 344444 488999999999999999999999999999999996 34444455555544
Q ss_pred hc-CCcceeeecccccCCCC
Q psy5781 119 LF-DKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 119 ~~-~~~~~~~vv~~k~dl~~ 137 (231)
.. ....+.++++||.|+..
T Consensus 223 ~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 223 NEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp CGGGTTSEEEEEEECHHHHH
T ss_pred hhccCCCeEEEEEECchhhh
Confidence 32 24556789999999865
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.46 E-value=4.3e-15 Score=136.33 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=86.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVII 99 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIl 99 (231)
+..+|+++|++++|||||+++|.+..+...+.+++..++....+..++ ...+.||||+|++.|..++..+++.+|++||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 467899999999999999999998877665666665444444444422 2368999999999999999999999999999
Q ss_pred EEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 100 EVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 100 V~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
|||.+ ..+ |.+.+........+.++++||.|+....
T Consensus 82 VVDa~dg~~~q----t~e~l~~~~~~~vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 82 VVAADDGVMKQ----TVESIQHAKDAHVPIVLAINKCDKAEAD 120 (537)
T ss_dssp ECBSSSCCCHH----HHHHHHHHHTTTCCEEECCBSGGGTTTS
T ss_pred EEECCCCccHH----HHHHHHHHHHcCCcEEEEEecccccccc
Confidence 99999 333 3333333334445678999999987543
No 148
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=2.6e-14 Score=125.41 Aligned_cols=118 Identities=18% Similarity=0.271 Sum_probs=71.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHc-CCCCCCcc--------cceeeEEEEEEEEECCeEEEEEEeeCCCc-------cc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRS-GDFVEKTG--------NTIGVDFSMKTVNIDGKKVKLQIWDTAGQ-------ER 82 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~-~~f~~~~~--------pt~~~~~~~~~~~~~~~~~~l~i~D~~G~-------~~ 82 (231)
...++|+|+|++|+|||||++++.. +.+...+. +|++.++....+..++..+.+.||||+|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999764 44444332 57766655555556677789999999998 66
Q ss_pred cchhhh-------hcccCCcEE-----------EEEEecC----cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 83 FRTITQ-------SYYRSANGV-----------IIEVTSV----EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 83 ~~~~~~-------~~~~~ad~v-----------IlV~dit----Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
+..+.. .|++.++++ ++||+++ ++..+. .|++.+ ....+.++++||.|+...+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 776665 666655443 3666665 666665 455544 3556678999999997654
Q ss_pred c
Q psy5781 140 P 140 (231)
Q Consensus 140 ~ 140 (231)
.
T Consensus 191 e 191 (361)
T 2qag_A 191 E 191 (361)
T ss_dssp H
T ss_pred H
Confidence 3
No 149
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.45 E-value=5.6e-13 Score=119.61 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=79.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCC--CCCC----------ccccee-------------------eEEEEEEEEEC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD--FVEK----------TGNTIG-------------------VDFSMKTVNID 66 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~--f~~~----------~~pt~~-------------------~~~~~~~~~~~ 66 (231)
....+||+++|..++|||||+++|+++. +..+ +.+|.+ +........++
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3467999999999999999999998653 1111 112211 11111111222
Q ss_pred CeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 67 GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 67 ~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.....+.||||+|+++|......++..+|++|||+|.+ ......+|+..+... +.+..++++||.|+..
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 23467999999999999888888999999999999999 344445555544432 2334678899999975
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.45 E-value=1.1e-13 Score=116.67 Aligned_cols=116 Identities=15% Similarity=0.209 Sum_probs=74.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc-CCCCCCc-------ccceeeEEEEEEEEECCeEEEEEEeeCCCcc-------c
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS-GDFVEKT-------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-------R 82 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~-~~f~~~~-------~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~-------~ 82 (231)
+...+||+|+|.+|+|||||+++++. +.+...+ .+|++.+.....+..++..+.+.||||+|.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 45689999999999999999999765 4455555 6788877776666667777899999999973 2
Q ss_pred cchhh-------hhccc-------------CCcEEEEEEecC--cHhhHH-HHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 83 FRTIT-------QSYYR-------------SANGVIIEVTSV--EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 83 ~~~~~-------~~~~~-------------~ad~vIlV~dit--Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+..+. ..|++ ++|+++++++.+ .+.... .+++.+.. ..+.++++||.|+..
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCC
Confidence 22222 33333 377899998776 444443 44444433 566778999999864
No 151
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.45 E-value=4.4e-14 Score=126.86 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=82.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC--CCCCCc-------------------------------ccceeeEEEEEEEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVEKT-------------------------------GNTIGVDFSMKTVNI 65 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~~~-------------------------------~pt~~~~~~~~~~~~ 65 (231)
...+||+++|..++|||||+++|+.+ .+.+.+ ..|+. ..... +
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~--~~~~~--~ 79 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTIN--LTFMR--F 79 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CE--E
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeE--eeEEE--E
Confidence 45699999999999999999999864 332111 12222 22222 3
Q ss_pred CCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcC-----CcceeeecccccCCCC
Q psy5781 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFD-----KYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 66 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~-----~~~~~~vv~~k~dl~~ 137 (231)
+.....+.||||+|+++|......+++.+|++|+|+|.+ +|+++..|..+.++... ..+..++++||.|+..
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 334467999999999999998899999999999999999 88877766555544332 2234568899999876
No 152
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.45 E-value=4.2e-13 Score=117.42 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=60.4
Q ss_pred cceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCc----------HhhHH---HHHHHHHH
Q psy5781 52 NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVE----------YCYQR---NWHKQAVT 118 (231)
Q Consensus 52 pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditS----------f~~l~---~w~~~i~~ 118 (231)
||+|++ ...+.+++ +.+.|||++||+.++.+|..|+++++++|+|||++. .+++. .|+..+.+
T Consensus 179 ~T~Gi~--~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 179 KTTGIV--ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp CCCSEE--EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred ceeceE--EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 355533 34455554 889999999999999999999999999999999994 33444 55555544
Q ss_pred hc-CCcceeeecccccCCCC
Q psy5781 119 LF-DKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 119 ~~-~~~~~~~vv~~k~dl~~ 137 (231)
.. ....++++++||.|+..
T Consensus 255 ~~~~~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLFE 274 (353)
T ss_dssp CGGGTTSEEEEEEECHHHHH
T ss_pred CccccCCcEEEEEECcCchh
Confidence 32 24566789999999853
No 153
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.43 E-value=1.2e-13 Score=120.27 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcc-cceeeEEEEEEEEECCeEEEEEEeeCCCcc----ccchhhhhccc---
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKTG-NTIGVDFSMKTVNIDGKKVKLQIWDTAGQE----RFRTITQSYYR--- 92 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~~-pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~~--- 92 (231)
.+|+++|.++||||||++++++.++. .+|. .|.. .....+.+++ ...+.|||++|.. ++..+...|++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~--p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLV--PNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCC--CCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccC--ceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 36889999999999999999976532 2332 2322 2223455553 2468999999964 34445555655
Q ss_pred CCcEEEEEEecC------cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCCccccccchhhhhhcC--CCcccccc-
Q psy5781 93 SANGVIIEVTSV------EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVRPCLFHKFGHASSSA--MPFPQVWP- 161 (231)
Q Consensus 93 ~ad~vIlV~dit------Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~--~~~~ev~~- 161 (231)
.++++|+|+|++ +++++..|+.++..+.+ ...+.++++||.|+...... . ........ .++.+++.
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~-~--~~l~~~l~~~~~v~~iSA~ 312 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN-L--EAFKEKLTDDYPVFPISAV 312 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH-H--HHHHHHCCSCCCBCCCSSC
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHH-H--HHHHHHhhcCCCEEEEECC
Confidence 499999999995 67888899999988764 35667899999999764321 1 11222222 34555554
Q ss_pred -ccchhhhhhhhc
Q psy5781 162 -CLKFGHAFSTSL 173 (231)
Q Consensus 162 -~~nv~e~f~~~~ 173 (231)
..|+++++....
T Consensus 313 tg~gi~eL~~~l~ 325 (342)
T 1lnz_A 313 TREGLRELLFEVA 325 (342)
T ss_dssp CSSTTHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 567777776654
No 154
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.42 E-value=2.6e-12 Score=114.31 Aligned_cols=154 Identities=8% Similarity=0.080 Sum_probs=92.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc---CCCCCCccc--ceeeEEEEEEEEE-------------C--C----eEEEEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS---GDFVEKTGN--TIGVDFSMKTVNI-------------D--G----KKVKLQ 73 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~---~~f~~~~~p--t~~~~~~~~~~~~-------------~--~----~~~~l~ 73 (231)
....+||+++|..++|||||++++.+ +.+..++.+ |+...+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 34579999999999999999999984 344455555 6665555444422 1 2 137899
Q ss_pred EeeCCCccccchhhhhcccCCcEEEEEEecC-c--HhhHHHHHHHHHHhcCCcceeeecccccCCCCCcccc--ccchh-
Q psy5781 74 IWDTAGQERFRTITQSYYRSANGVIIEVTSV-E--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCL--FHKFG- 147 (231)
Q Consensus 74 i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-S--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~--~~~~~- 147 (231)
|||++|+++|.......+..+|++|||+|.+ . .....+.+..+.. . ..+..++++||.|+....... ..+..
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l-~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-L-GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-T-TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-c-CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 9999999998887777788899999999998 2 2333333333322 2 223467899999997644321 11111
Q ss_pred hhhh---cCCCcccccc--ccchhhhhhhhc
Q psy5781 148 HASS---SAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 148 ~s~~---~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
.... ...++..++. ..|+++.+....
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 1111 2334445544 567777776654
No 155
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.41 E-value=6.4e-13 Score=123.50 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=93.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcC--CCC-----CCcc------cceeeEEEEEEEEE-----CCeEEEEEEeeCCCcc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSG--DFV-----EKTG------NTIGVDFSMKTVNI-----DGKKVKLQIWDTAGQE 81 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~--~f~-----~~~~------pt~~~~~~~~~~~~-----~~~~~~l~i~D~~G~~ 81 (231)
+..+|+++|..++|||||+++++.. .+. ..+. .+.|++.....+.+ +++.+.++||||+|+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 5689999999999999999999862 111 1111 12233332222222 5667999999999999
Q ss_pred ccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCC---
Q psy5781 82 RFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMP--- 155 (231)
Q Consensus 82 ~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~--- 155 (231)
+|......+++.+|++|+|+|.+ +++....|...+. ...+.++++||.|+.....-. ...+.....+.+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~~~~-v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAADPER-VAEEIEDIVGIDATD 157 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCCHHH-HHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCcccccHHH-HHHHHHHHhCCCcce
Confidence 99999999999999999999998 7788888876653 244577899999998644211 011123333333
Q ss_pred cccccc--ccchhhhhhhhc
Q psy5781 156 FPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 156 ~~ev~~--~~nv~e~f~~~~ 173 (231)
+..++. ..|+++.+....
T Consensus 158 vi~vSAktg~GI~~Ll~~I~ 177 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLV 177 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHH
T ss_pred EEEeecccCCCchhHHHHHh
Confidence 333333 567777776643
No 156
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.39 E-value=1.4e-12 Score=118.49 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=79.3
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHHcCC-------CCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc
Q psy5781 10 PNTFQDDSYDFLFKVVLIGDCGVGKTCVVHRFRSGD-------FVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 10 ~~~~~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~~-------f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 82 (231)
+++.+.......++|+++|..++|||||++++++.. +..+..+.+..+.....+.+++ ..+.||||+|+++
T Consensus 8 ~~~~~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~ 85 (482)
T 1wb1_A 8 SIEGRPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHAD 85 (482)
T ss_dssp -----CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHH
T ss_pred CCCcchhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHH
Confidence 344444455678999999999999999999999766 2233332222223333455555 6899999999999
Q ss_pred cchhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 83 FRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|......++..+|++|||+|.+ -...-.+++..+... + ...++++||.|+..
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~-ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF--N-IPIIVVITKSDNAG 139 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT--T-CCBCEEEECTTSSC
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc--C-CCEEEEEECCCccc
Confidence 9888888999999999999998 122222333333321 2 23378999999875
No 157
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.6e-12 Score=121.25 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=80.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCc-------------------------------ccceeeEEEEEEEEEC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT-------------------------------GNTIGVDFSMKTVNID 66 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~-------------------------------~pt~~~~~~~~~~~~~ 66 (231)
....+||+++|.+++|||||+++|++....-.. .+.+..+.....+..+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 345799999999999999999999965321100 0111111222233333
Q ss_pred CeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCc--Hh----hHHHHHHHHHHhcCC-cceeeecccccCCCC
Q psy5781 67 GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVE--YC----YQRNWHKQAVTLFDK-YKFGHAFSTSLAMPQ 137 (231)
Q Consensus 67 ~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditS--f~----~l~~w~~~i~~~~~~-~~~~~vv~~k~dl~~ 137 (231)
...+.||||+|+++|......+++.+|++|+|+|++. |+ ....+...+...... .+..++++||.|+..
T Consensus 244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 4678999999999999999999999999999999982 22 223444444333332 244678899999876
No 158
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.39 E-value=2.3e-12 Score=115.69 Aligned_cols=114 Identities=21% Similarity=0.169 Sum_probs=74.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh----------
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI---------- 86 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~---------- 86 (231)
...+||+++|++|||||||++++++..+ ...+..|. .+.....+.++|. .+.+|||+|..+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT-~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT-RDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTE--EEEESSCSCC-----------CCSCC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCc-CCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHH
Confidence 3569999999999999999999998764 33333322 3444566778885 5789999997543221
Q ss_pred --hhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 87 --TQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 87 --~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
...+++.+|++++|+|.+ +++.. .+...+. ......++++||.|+....
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~---~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME---RRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH---HTTCEEEEEEECGGGSTTG
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCCCch
Confidence 134677899999999998 44432 2222222 2345677899999987543
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.39 E-value=5.6e-13 Score=121.14 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=77.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC--CCCCCc---------------------------ccceeeEEEEEEEEECCeE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVEKT---------------------------GNTIGVDFSMKTVNIDGKK 69 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~~~---------------------------~pt~~~~~~~~~~~~~~~~ 69 (231)
...+||+++|..++|||||+++|++. .+...+ ....|++.......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 45799999999999999999999854 111100 0011222222233343445
Q ss_pred EEEEEeeCCCccccchhhhhcccCCcEEEEEEecC---cHhh--HHHHHHHHHHhc--CCcceeeecccccCCCC
Q psy5781 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV---EYCY--QRNWHKQAVTLF--DKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 70 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~--l~~w~~~i~~~~--~~~~~~~vv~~k~dl~~ 137 (231)
+.+.||||+|+++|......+++.+|++|||+|++ ++.. +..|..+..... ...+..++++||.|+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 78999999999999999999999999999999999 2222 112222222221 12234678999999876
No 160
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.39 E-value=2.2e-12 Score=113.34 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=78.3
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCc---------cccchhhhhc
Q psy5781 21 LFK-VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ---------ERFRTITQSY 90 (231)
Q Consensus 21 ~~k-IvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~---------~~~~~~~~~~ 90 (231)
.++ |+++|.+|||||||++++++..+.....+....+.....+.+++ ..+.+|||+|. +.+...+. .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 355 99999999999999999998776322222222245556778887 46799999996 22333333 5
Q ss_pred ccCCcEEEEEEecC--c---HhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 91 YRSANGVIIEVTSV--E---YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 91 ~~~ad~vIlV~dit--S---f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+..+|++++|+|++ . ++.+..|.+.+........+.+++.||.|+...
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 78999999999998 2 445566777776665456667889999998653
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.38 E-value=4.6e-13 Score=119.05 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=83.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC--------CCCCC-------cccceeeEEEEEEEEECCeEEEEEEeeCCCccc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--------DFVEK-------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~--------~f~~~-------~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 82 (231)
....+||+++|..++|||||++++++. .|... ...+.|.+.....+.++.....+.||||+|+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 345799999999999999999999873 22110 001223223333344444446789999999999
Q ss_pred cchhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 83 FRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|......+++.+|++|+|+|.+ .+....+|+..+... +.+..++++||.|+..
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~--~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEECccccC
Confidence 9888888999999999999998 445556666665542 2222568899999874
No 162
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.38 E-value=3.1e-12 Score=118.78 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=95.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC--CCCC-----Cccc------ceeeEEE--EEEEEE---CCeEEEEEEeeCCCc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE-----KTGN------TIGVDFS--MKTVNI---DGKKVKLQIWDTAGQ 80 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~-----~~~p------t~~~~~~--~~~~~~---~~~~~~l~i~D~~G~ 80 (231)
.+..+|+++|..++|||||+++++.. .+.. .+.. ..|++.. ...+.+ +++.+.++||||+|+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 46789999999999999999999852 1111 1111 1121111 112222 566799999999999
Q ss_pred cccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchhhhhhcCCC--
Q psy5781 81 ERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFGHASSSAMP-- 155 (231)
Q Consensus 81 ~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~~s~~~~~~-- 155 (231)
.+|......+++.+|++|+|+|.+ +++....|...+. ...+.++++||.|+....... ...+.....+.+
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~~~~-v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSADVDR-VKKQIEEVLGLDPE 158 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCCHHH-HHHHHHHTSCCCGG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccCHHH-HHHHHHHhhCCCcc
Confidence 999988889999999999999999 7788888876653 244577899999997644211 011122333332
Q ss_pred -cccccc--ccchhhhhhhhc
Q psy5781 156 -FPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 156 -~~ev~~--~~nv~e~f~~~~ 173 (231)
+..++. ..|+++.+...+
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~ 179 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIV 179 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHH
T ss_pred cEEEEEeecCCCchHHHHHHH
Confidence 233333 567777776643
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.37 E-value=6e-13 Score=120.50 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=69.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHc--CCCCC-------------------------------CcccceeeEEEEEEEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRS--GDFVE-------------------------------KTGNTIGVDFSMKTVNI 65 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~--~~f~~-------------------------------~~~pt~~~~~~~~~~~~ 65 (231)
...+||+++|..++|||||+++|+. +.+.+ +.-.|+... ...+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~--~~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG--RAYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee--eEEEec
Confidence 4578999999999999999999974 22210 112333322 223444
Q ss_pred CCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC------cHhhHHHHHHHHHHhcCCcce-eeecccccCCCC
Q psy5781 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV------EYCYQRNWHKQAVTLFDKYKF-GHAFSTSLAMPQ 137 (231)
Q Consensus 66 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit------Sf~~l~~w~~~i~~~~~~~~~-~~vv~~k~dl~~ 137 (231)
++ ..+.||||+|+++|......+++.+|++|||+|.+ +|+....|.+++......... .++++||.|+..
T Consensus 119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence 44 67899999999999988888999999999999998 344444566665544433333 678899999964
No 164
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.35 E-value=8.3e-12 Score=106.80 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=92.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc-c--------cchhh
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFV--EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE-R--------FRTIT 87 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~-~--------~~~~~ 87 (231)
.+..+|+++|.+|||||||++++++..+. .....|.. +.....+..++ ..+.+|||+|.. . +....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence 34568999999999999999999988753 11222221 11112233333 678999999987 2 33445
Q ss_pred hhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCCccccccchh-hhhhcCC-Ccccccc--cc
Q psy5781 88 QSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAM-PFPQVWP--CL 163 (231)
Q Consensus 88 ~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~-~~~ev~~--~~ 163 (231)
..+++.+|++++|+|.+.+.....|+.+... ....+.++++||.|+............ .....+. .+..+++ ..
T Consensus 83 ~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTRWTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp TSCCCCEEEEEEEEETTCCCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HHHHhcCCEEEEEEeCCCCCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 6788999999999999854444455443322 334566788899998762211111111 1222221 2334444 56
Q ss_pred chhhhhhhhcc
Q psy5781 164 KFGHAFSTSLA 174 (231)
Q Consensus 164 nv~e~f~~~~~ 174 (231)
|+++.+.....
T Consensus 161 ~v~~l~~~i~~ 171 (301)
T 1ega_A 161 NVDTIAAIVRK 171 (301)
T ss_dssp THHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 78888877663
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.35 E-value=1.4e-12 Score=110.60 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=75.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC------ccccee--------------------eEE-------------
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK------TGNTIG--------------------VDF------------- 58 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~------~~pt~~--------------------~~~------------- 58 (231)
.....||+|+|++|||||||++++++..+.+. ..|+.- .++
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999887421 223210 000
Q ss_pred ----------EEEEEEECC-eEEEEEEeeCCCcc-------------ccchhhhhcccCCcEEE-EEEecC-cHh--hHH
Q psy5781 59 ----------SMKTVNIDG-KKVKLQIWDTAGQE-------------RFRTITQSYYRSANGVI-IEVTSV-EYC--YQR 110 (231)
Q Consensus 59 ----------~~~~~~~~~-~~~~l~i~D~~G~~-------------~~~~~~~~~~~~ad~vI-lV~dit-Sf~--~l~ 110 (231)
....+.+.+ ....+.||||+|.. .+..+...|++.++++| +|+|.+ .+. ...
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000011100 12579999999963 34556778888888777 699998 333 222
Q ss_pred HHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 111 NWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 111 ~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.|.+.+. ......++++||.|+...
T Consensus 183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 183 KIAKEVD---PQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHC---TTCSSEEEEEECGGGSCT
T ss_pred HHHHHhC---CCCCeEEEEEEccccCCC
Confidence 3444442 345567899999998654
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.34 E-value=4.1e-13 Score=122.30 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=80.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVI 98 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vI 98 (231)
.+..+|+++|..++|||||++++....+.....+.+..+.....+..++ ..+.||||+|++.|..++..++..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3567999999999999999999997665543333222222222333344 46899999999999999999999999999
Q ss_pred EEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 99 IEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 99 lV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
||||.+ ..+..+.| ..+. ....+.++++||.|+...
T Consensus 80 LVVda~~g~~~qT~e~l-~~~~---~~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHAK---AAQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHHH---HTTCCEEEEEECSSSSTT
T ss_pred EEeecccCccHHHHHHH-HHHH---hcCceEEEEEEecccccc
Confidence 999998 22222222 2222 234447789999998753
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.33 E-value=6.7e-13 Score=121.83 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=80.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc------------------CCCCCCc----ccceeeEEEEEEEEECCeEEEEEEe
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS------------------GDFVEKT----GNTIGVDFSMKTVNIDGKKVKLQIW 75 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~------------------~~f~~~~----~pt~~~~~~~~~~~~~~~~~~l~i~ 75 (231)
..+..+|+++|.+|+|||||+++++. ..+.... .+.+........+..++ +.++||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~li 87 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLL 87 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEE
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEE
Confidence 34678999999999999999999961 1111000 01111112223344444 789999
Q ss_pred eCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 76 DTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 76 D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
||+|+.+|......+++.+|++|+|+|.+ +.+....|.. +. ....+.++++||.|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~---~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CR---LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HH---TTTCCEEEEEECTTSCCS
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HH---HcCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999999 6666555543 22 234567789999998754
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.33 E-value=1.3e-11 Score=109.81 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=97.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHc---CCCCCCccc--ceeeEEEEEEEEE-------------C--C----eEEEE
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRS---GDFVEKTGN--TIGVDFSMKTVNI-------------D--G----KKVKL 72 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~---~~f~~~~~p--t~~~~~~~~~~~~-------------~--~----~~~~l 72 (231)
.....++|+++|..++|||||++++++ +.+..++.+ |+...+....+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 456789999999999999999999984 344444445 6655555443322 1 1 13789
Q ss_pred EEeeCCCccccchhhhhcccCCcEEEEEEecC-c--HhhHHHHHHHHHHhcCCcceeeecccccCCCCCccc--cccchh
Q psy5781 73 QIWDTAGQERFRTITQSYYRSANGVIIEVTSV-E--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPC--LFHKFG 147 (231)
Q Consensus 73 ~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit-S--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~~--~~~~~~ 147 (231)
.||||+|+++|.......+..+|++|||+|.+ . .....+.+..+... ..+..++++||.|+...... ...+..
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 99999999998877777788999999999998 2 23333333333322 22346688999998764321 111111
Q ss_pred -hhhh---cCCCcccccc--ccchhhhhhhhc
Q psy5781 148 -HASS---SAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 148 -~s~~---~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
.... ...++..++. ..|+++.+....
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 1111 2334445544 567777776654
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.33 E-value=2.8e-12 Score=113.79 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=77.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcC-------CCCCC-------cccceeeEEEEEEEEECCeEEEEEEeeCCCccccch
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSG-------DFVEK-------TGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT 85 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~-------~f~~~-------~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 85 (231)
..+||+++|..++|||||+++|++. .|... .....|.+.....+.++.....+.||||+|+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 3589999999999999999999863 11110 001112222222233433446789999999999988
Q ss_pred hhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 86 ITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 86 ~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
....+++.+|++|+|+|.+ ......+++..+... +.+..++++||.|+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI--GVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCeEEEEEECcccCC
Confidence 8888999999999999999 233333333344321 2232468899999875
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.33 E-value=8.5e-13 Score=119.26 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=77.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC--CCCC-------------------------------CcccceeeEEEEEEEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE-------------------------------KTGNTIGVDFSMKTVNI 65 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~-------------------------------~~~pt~~~~~~~~~~~~ 65 (231)
...++|+++|..++|||||+++|++. .+.+ +.-.|+...+ ..+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~~~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--WKFET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--EEEEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--EEEec
Confidence 45799999999999999999999864 2211 0112333222 23333
Q ss_pred CCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC--cHh-------hHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 66 DGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV--EYC-------YQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 66 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit--Sf~-------~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
....+.||||+|+++|......++..+|++|||+|.+ .++ ...+++..+.. ...+..++++||.|+.
T Consensus 83 --~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 --PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp --SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGG
T ss_pred --CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccc
Confidence 3467999999999999988899999999999999999 222 22222222221 1223366889999987
Q ss_pred C
Q psy5781 137 Q 137 (231)
Q Consensus 137 ~ 137 (231)
.
T Consensus 159 ~ 159 (458)
T 1f60_A 159 K 159 (458)
T ss_dssp T
T ss_pred c
Confidence 3
No 171
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.32 E-value=2.8e-12 Score=123.67 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=83.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC------------CCCC----Cc--ccceeeEEEEEEEE------------ECC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG------------DFVE----KT--GNTIGVDFSMKTVN------------IDG 67 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~------------~f~~----~~--~pt~~~~~~~~~~~------------~~~ 67 (231)
..+..||+++|..++|||||+++++.. .+.+ ++ ..|+........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 456789999999999999999999864 2211 01 12433222222222 245
Q ss_pred eEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 68 ~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
..+.++||||+|+.+|...+..+++.+|++|+|||++ +++....|..... ...+.++++||.|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 5789999999999999999999999999999999999 7777766764432 344567899999876
No 172
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.31 E-value=2.7e-12 Score=112.31 Aligned_cols=120 Identities=16% Similarity=0.241 Sum_probs=81.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCccccee-----e-------------EE-----------------------
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG-----V-------------DF----------------------- 58 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~-----~-------------~~----------------------- 58 (231)
...+|+|+|++|||||||++++++..|.+....++. . .+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 344999999999999999999999887433221110 0 00
Q ss_pred -----------EEEEEEE-CCeEEEEEEeeCCCcccc-------------chhhhhcccCCcEEEEEEecC-cHhhHHHH
Q psy5781 59 -----------SMKTVNI-DGKKVKLQIWDTAGQERF-------------RTITQSYYRSANGVIIEVTSV-EYCYQRNW 112 (231)
Q Consensus 59 -----------~~~~~~~-~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~ad~vIlV~dit-Sf~~l~~w 112 (231)
....+.+ ......+.||||+|...+ ..+...|++++|++|+|+|.+ ....-..|
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0001111 011235899999998775 567788999999999999886 22223567
Q ss_pred HHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 113 HKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 113 ~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
+..+..........++++||.|+....
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 776666666666677899999987543
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.30 E-value=2e-12 Score=118.78 Aligned_cols=119 Identities=11% Similarity=0.112 Sum_probs=77.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC--CCCC------------------CcccceeeEEEEEEEEECCeEEEEEEeeCC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE------------------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~------------------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~ 78 (231)
.+..+|+++|.+++|||||+++++.. .+.. ...++.|.+.......++...+.+.||||+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 46799999999999999999999863 1100 001122222221122222234789999999
Q ss_pred CccccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcC-CcceeeecccccCCCCCc
Q psy5781 79 GQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 79 G~~~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~~~ 139 (231)
|+++|......+++.+|++|+|+|.+.- +..|..++.+.+. ...+.++++||.|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g--~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKG--VEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTC--SCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCcc--chHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 9999998888899999999999999921 1223333333332 344577899999987643
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.30 E-value=1.1e-11 Score=117.26 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=82.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHcC--CCC------C------------CcccceeeEEEEEEEEECCeEEEEEEe
Q psy5781 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSG--DFV------E------------KTGNTIGVDFSMKTVNIDGKKVKLQIW 75 (231)
Q Consensus 16 ~~~~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~------~------------~~~pt~~~~~~~~~~~~~~~~~~l~i~ 75 (231)
....+..+|+++|..|+|||||+++++.. .+. . ...+|+.. ....+..++ +.++||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~--~~~~~~~~~--~~i~li 82 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA--AVTTCFWKD--HRINII 82 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C--CEEEEEETT--EEEEEE
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc--ceEEEEECC--eEEEEE
Confidence 34567899999999999999999999842 110 0 12234332 222334443 789999
Q ss_pred eCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 76 DTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 76 D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
||+|+.+|...+..+++.+|++|+|+|.+ +++....|... .+ ...+.++++||.|+....
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~---~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK---YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH---TTCCEEEEEECTTSTTCC
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH---cCCCEEEEEECCCcccCC
Confidence 99999999999999999999999999999 66666666643 22 245567889999987643
No 175
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.29 E-value=1.3e-12 Score=111.86 Aligned_cols=152 Identities=13% Similarity=0.193 Sum_probs=74.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC-CCCCCc--------ccceeeEEEEEEEEECCeEEEEEEeeCCCc-------c
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG-DFVEKT--------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ-------E 81 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~-~f~~~~--------~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~-------~ 81 (231)
+...++|+++|++|||||||++++.+. .++... .++++.......+..++....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 456799999999999999999998764 554433 233332222222233455678999999998 5
Q ss_pred ccchhhh-------hcccCCc-------------EEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 82 RFRTITQ-------SYYRSAN-------------GVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 82 ~~~~~~~-------~~~~~ad-------------~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
.+..+.. .|++..+ +++++.+.+ +++.+.. +.+++. .......++++|.|+....
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence 5555554 5554433 244444433 4777652 333333 3444567889999987543
Q ss_pred cccc--cc-hhhhhhcCCCcccccc--ccchhhhhhhhc
Q psy5781 140 PCLF--HK-FGHASSSAMPFPQVWP--CLKFGHAFSTSL 173 (231)
Q Consensus 140 ~~~~--~~-~~~s~~~~~~~~ev~~--~~nv~e~f~~~~ 173 (231)
+... .. .......+..+.++++ . |++++|...+
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~ 209 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQT 209 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHH
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHH
Confidence 3211 11 1134455667777765 4 6777776544
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.28 E-value=5.1e-12 Score=101.31 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=66.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc----------cchhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----------FRTIT 87 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~ 87 (231)
.....+|+++|++|||||||++++++..+...+.|+.|.......+.+++ .+.+||++|... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999998876666778877655444444444 478999999742 23333
Q ss_pred hhcc---cCCcEEEEEEecC---cHh--hHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 88 QSYY---RSANGVIIEVTSV---EYC--YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 88 ~~~~---~~ad~vIlV~dit---Sf~--~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
..++ +.++++++|+|++ ++. .+..|+.. ......+++||.|+..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSC
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEecccCCC
Confidence 3444 5789999999998 332 22333321 2233456789988765
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.27 E-value=6.1e-12 Score=123.20 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=80.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC-------CCCC-------CcccceeeEEEEEEEEECCeEEEEEEeeCCCcccc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG-------DFVE-------KTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~-------~f~~-------~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 83 (231)
....+||+++|..++|||||++++++. .+.. ....+.|++.....+.++.....+.||||+|+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 456799999999999999999999863 1111 11233444333333444445578999999999999
Q ss_pred chhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 84 RTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 84 ~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
......+++.+|++|||+|.+ .+....+|+..+... +.+.+++++||.|+..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSCEEEEEECCTTCC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCeEEEEEeeccccc
Confidence 888888999999999999999 444555666555432 2232568899999975
No 178
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.27 E-value=2.4e-12 Score=119.67 Aligned_cols=115 Identities=19% Similarity=0.077 Sum_probs=79.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEEEE------------EECCeEEEEEEeeCCCccc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTV------------NIDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~~~------------~~~~~~~~l~i~D~~G~~~ 82 (231)
.+..+|+++|+.++|||||++++++..+... ..++++..+..... .++.....++||||+|++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3568999999999999999999987655331 23455533321100 0001112589999999999
Q ss_pred cchhhhhcccCCcEEEEEEecCc---HhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 83 FRTITQSYYRSANGVIIEVTSVE---YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 83 ~~~~~~~~~~~ad~vIlV~ditS---f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
|..++..+++.+|++|+|||++. .+....|. .+. ....+.++++||.|+..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~---~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILR---MYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHH---HTTCCEEEEEECGGGST
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHH---HcCCeEEEEeccccccc
Confidence 99999999999999999999992 33333332 222 23445779999999864
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.26 E-value=1e-11 Score=106.09 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=74.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCc------ccceeeEEEE-------------------------------
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT------GNTIGVDFSM------------------------------- 60 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~------~pt~~~~~~~------------------------------- 60 (231)
.....+|+|+|++|||||||++++++..+.... .|+.- ....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLIL-QLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIR 99 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEE-EEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEE-EEEeCCCcccccchhhhhhhhcccccccCCHHHHH
Confidence 345679999999999999999999988763211 11100 0000
Q ss_pred ---------------------EEEEE-CCeEEEEEEeeCCCccc-------------cchhhhhcccCCcEEEEEEecC-
Q psy5781 61 ---------------------KTVNI-DGKKVKLQIWDTAGQER-------------FRTITQSYYRSANGVIIEVTSV- 104 (231)
Q Consensus 61 ---------------------~~~~~-~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~ad~vIlV~dit- 104 (231)
..+.+ ......+.||||+|..+ +......+++.+|++++|+|.+
T Consensus 100 ~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 100 EEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 00011 11124689999999753 4556778899999999999985
Q ss_pred -cHh--hHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 105 -EYC--YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 105 -Sf~--~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
.+. ....+...+ .......++++||.|+....
T Consensus 180 ~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 180 TDLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp SCSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSS
T ss_pred cchhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcc
Confidence 222 212233322 23455677899999987543
No 180
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.24 E-value=9.9e-13 Score=112.58 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=78.9
Q ss_pred HHHHHHHcCCCC-CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecC----cHhhHH
Q psy5781 36 CVVHRFRSGDFV-EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSV----EYCYQR 110 (231)
Q Consensus 36 SLl~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit----Sf~~l~ 110 (231)
+|+.+|+.+.|. ++|.||+|..+. ..+..++ .+.|||+ +++++.+++.|++++|++|+|||++ +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 799999999998 899999995443 3332333 6899999 8999999999999999999999998 688899
Q ss_pred HHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 111 NWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 111 ~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
.|+.++.. ...+.++++||.|+...+
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~ 131 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDED 131 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHH
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCch
Confidence 99998765 356678999999997643
No 181
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.23 E-value=1.3e-11 Score=108.68 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=75.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVT 102 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~d 102 (231)
+|+++|..++|||||+++++ +...|+...+ ..+..++ ..+.||||+|+++|......+++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 2334444333 2333333 569999999999998777788899999999999
Q ss_pred cC--cHhhHHHHHHHHHHhcCCcceeeeccc-ccCC
Q psy5781 103 SV--EYCYQRNWHKQAVTLFDKYKFGHAFST-SLAM 135 (231)
Q Consensus 103 it--Sf~~l~~w~~~i~~~~~~~~~~~vv~~-k~dl 135 (231)
+ .+....+|+..+... ..+..+++.| |.|+
T Consensus 93 -~~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 93 -PQGLDAHTGECIIALDLL--GFKHGIIALTRSDST 125 (370)
T ss_dssp -TTCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS
T ss_pred -CCCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC
Confidence 7 666677777666543 2333356777 9998
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.22 E-value=1.7e-12 Score=120.67 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=60.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCC-------------------------------CCCCcccceeeEEEEEEEEEC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGD-------------------------------FVEKTGNTIGVDFSMKTVNID 66 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~-------------------------------f~~~~~pt~~~~~~~~~~~~~ 66 (231)
....+||+++|..++|||||+++|+... +..+..+.+..+.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 3457899999999999999999996321 11111222222233233333
Q ss_pred CeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCc------HhhHHHHHHHHHHhcC-CcceeeecccccCCCC
Q psy5781 67 GKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVE------YCYQRNWHKQAVTLFD-KYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 67 ~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditS------f~~l~~w~~~i~~~~~-~~~~~~vv~~k~dl~~ 137 (231)
....+.||||+|+++|......+++.+|++|||+|.+. +.....+...+..... +.+..++++||.|+..
T Consensus 253 -~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 253 -DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred -CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 34688999999999999888889999999999999982 2111122222222222 2223668899999864
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.21 E-value=5.6e-11 Score=112.54 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=80.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC--CCCC------------------CcccceeeEEEEEEEEE-----CCeEEEE
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG--DFVE------------------KTGNTIGVDFSMKTVNI-----DGKKVKL 72 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~--~f~~------------------~~~pt~~~~~~~~~~~~-----~~~~~~l 72 (231)
..+..+|+++|..++|||||+++++.. .+.. +...|+.... ..+.+ ++..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA--TTAFWSGMAKQYEPHRI 84 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece--EEEEECCccccCCceeE
Confidence 456789999999999999999999742 2211 1112332111 22332 2345899
Q ss_pred EEeeCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 73 QIWDTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 73 ~i~D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+||||+|+.+|......+++.+|++|+|+|.+ ..+....|.. +. ....+.++++||.|+...
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCcccc
Confidence 99999999999988899999999999999999 4444444533 22 224456688999998764
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.21 E-value=5.8e-11 Score=112.27 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=81.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc--CCCCC-----------C-------cccceeeEEEEEEEEECCeEEEEEEeeC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS--GDFVE-----------K-------TGNTIGVDFSMKTVNIDGKKVKLQIWDT 77 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~--~~f~~-----------~-------~~pt~~~~~~~~~~~~~~~~~~l~i~D~ 77 (231)
..+..+|+++|..|+|||||+++++. +.+.. + ...|+. .....+..++ +.+.||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~--~~~~~~~~~~--~~i~liDT 82 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT--SAATTAAWEG--HRVNIIDT 82 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------C--CSEEEEEETT--EEEEEECC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEe--eeeEEEEECC--eeEEEEEC
Confidence 34678999999999999999999985 32211 1 111222 1122344444 78999999
Q ss_pred CCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 78 AGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 78 ~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+|+.+|......+++.+|++|+|+|.+ ++.....|.. +.+ ...+.++++||.|+...
T Consensus 83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 999999988899999999999999998 6666666654 333 24556788999998764
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.18 E-value=3.3e-11 Score=113.53 Aligned_cols=116 Identities=13% Similarity=0.044 Sum_probs=79.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCCC-------------CCccc---ceeeEEEEEEEEECCeEEEEEEeeCCCcc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-------------EKTGN---TIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-------------~~~~p---t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 81 (231)
.....+|+++|+.|+|||||+++++..... .++.+ ..++.+......+....+.++||||+|++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 345689999999999999999999843321 11111 11222222333333335789999999999
Q ss_pred ccchhhhhcccCCcEEEEEEecC--cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 82 RFRTITQSYYRSANGVIIEVTSV--EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 82 ~~~~~~~~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
+|......+++.+|++++|+|.+ .......|+..+.. .....++++||.|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH---ccCCEEEEecCCchh
Confidence 99988999999999999999988 22223344444443 234566889999987
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.18 E-value=5.4e-11 Score=106.16 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=71.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCC-CCc-------ccceeeEEEEEEEEECCeEEEEEEeeCCCccccc----
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV-EKT-------GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR---- 84 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~-------~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---- 84 (231)
-....++|+++|++|||||||++++++..+. ..+ .+|++.+.....+..++....+++||++|...+.
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3556789999999999999999999987663 211 2344433222222334445689999999976431
Q ss_pred ---h------------------hhhhcccCCcEEEEEEecC----cHhhHH-HHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 85 ---T------------------ITQSYYRSANGVIIEVTSV----EYCYQR-NWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 85 ---~------------------~~~~~~~~ad~vIlV~dit----Sf~~l~-~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
. +.+.++.++++.+++|+++ +++.+. .|++.+. ....++++++|.|+...
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence 1 1244566777766677665 566665 6777664 34567789999998754
Q ss_pred cc
Q psy5781 139 RP 140 (231)
Q Consensus 139 ~~ 140 (231)
..
T Consensus 183 ~e 184 (418)
T 2qag_C 183 EE 184 (418)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.17 E-value=2e-11 Score=106.55 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=73.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCc------ccce--------------------------------------
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT------GNTI-------------------------------------- 54 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~------~pt~-------------------------------------- 54 (231)
....+|+|+|++|||||||++++++..|.+.. .|+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999998874221 2331
Q ss_pred -----eeEEEEEEEEECC-eEEEEEEeeCCCcc-------------ccchhhhhcccCCcEEEEEE-ecC-cHhhHHHHH
Q psy5781 55 -----GVDFSMKTVNIDG-KKVKLQIWDTAGQE-------------RFRTITQSYYRSANGVIIEV-TSV-EYCYQRNWH 113 (231)
Q Consensus 55 -----~~~~~~~~~~~~~-~~~~l~i~D~~G~~-------------~~~~~~~~~~~~ad~vIlV~-dit-Sf~~l~~w~ 113 (231)
++......+.+.+ ....+.||||+|.. .+..+...|++.++.+|+++ |.+ .+... .|.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~-~~~ 187 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS-DAL 187 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC-HHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh-HHH
Confidence 0000000111111 13569999999953 34556777887777666655 444 44432 343
Q ss_pred HHHHHhcCCcceeeecccccCCCCC
Q psy5781 114 KQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 114 ~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
..+....+.....++++||.|+...
T Consensus 188 ~i~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHHCTTCTTEEEEEECGGGSCT
T ss_pred HHHHHhCcCCCceEEEeccccccCc
Confidence 3444444455667899999998654
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.15 E-value=3.9e-11 Score=113.49 Aligned_cols=117 Identities=10% Similarity=0.145 Sum_probs=77.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCC-Ccccceee----E----EE------------------------------
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGV----D----FS------------------------------ 59 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~~pt~~~----~----~~------------------------------ 59 (231)
...++|+|+|++|+|||||+|++++..+.. ...|+... . ..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 356899999999999999999999877532 22333310 0 00
Q ss_pred ---------------EEEEEECCeE--EEEEEeeCCCccc---cchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHH
Q psy5781 60 ---------------MKTVNIDGKK--VKLQIWDTAGQER---FRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQA 116 (231)
Q Consensus 60 ---------------~~~~~~~~~~--~~l~i~D~~G~~~---~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i 116 (231)
...+...... ..+.||||||... .......|++.+|++|+|+|.+ +......|.+.+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0001111000 3589999999654 3345678899999999999998 666666676555
Q ss_pred HHhcCCcceeeecccccCCCCC
Q psy5781 117 VTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 117 ~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.+ .....++++||.|+...
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGG
T ss_pred Hh---hCCCEEEEEECcccccc
Confidence 32 23347789999998643
No 189
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.15 E-value=4.8e-11 Score=110.03 Aligned_cols=115 Identities=15% Similarity=0.078 Sum_probs=79.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCCC---CCcccceeeEEEEEEEEEC-------------------------C-
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFV---EKTGNTIGVDFSMKTVNID-------------------------G- 67 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f~---~~~~pt~~~~~~~~~~~~~-------------------------~- 67 (231)
......+|+|+|..|||||||+|++++..+. ....|+... . ..+..+ +
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~ 137 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGN 137 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E--EEEECCSSSEEECCC------------------
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E--EEEEECCcccccCCceeeecCcccHHHHhhhcc
Confidence 3456799999999999999999999998763 222232210 0 000000 0
Q ss_pred -----eE---------EEEEEeeCCCccc-----------cchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHh
Q psy5781 68 -----KK---------VKLQIWDTAGQER-----------FRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTL 119 (231)
Q Consensus 68 -----~~---------~~l~i~D~~G~~~-----------~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~ 119 (231)
-. ..+.||||+|... +......++..+|++|+|+|.+ ..+....|++.+..
T Consensus 138 ~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~- 216 (550)
T 2qpt_A 138 TFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG- 216 (550)
T ss_dssp CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-
T ss_pred cccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-
Confidence 00 2589999999864 4456677889999999999998 35566677766543
Q ss_pred cCCcceeeecccccCCCC
Q psy5781 120 FDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 120 ~~~~~~~~vv~~k~dl~~ 137 (231)
.....++++||.|+..
T Consensus 217 --~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 --HEDKIRVVLNKADMVE 232 (550)
T ss_dssp --CGGGEEEEEECGGGSC
T ss_pred --cCCCEEEEEECCCccC
Confidence 2345778999999875
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=1.6e-10 Score=102.51 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=48.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCc-----ccceeeEEEEEE---------------EEECC-eEEEEEEeeCCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-EKT-----GNTIGVDFSMKT---------------VNIDG-KKVKLQIWDTAG 79 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~-~~~-----~pt~~~~~~~~~---------------~~~~~-~~~~l~i~D~~G 79 (231)
+||+++|.+|||||||++++++.... ..+ .|+.+..+.... ..+++ ..+.+.||||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 222 233442211100 11233 257899999999
Q ss_pred ccc----cchhhh---hcccCCcEEEEEEecC
Q psy5781 80 QER----FRTITQ---SYYRSANGVIIEVTSV 104 (231)
Q Consensus 80 ~~~----~~~~~~---~~~~~ad~vIlV~dit 104 (231)
... .+.+.. .+++.+|++++|+|++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~ 112 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT 112 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETT
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecc
Confidence 753 233333 4578999999999997
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=7e-11 Score=103.45 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC-Ccc-cceeeEEEEEEEEECCe---------------EEEEEEeeCCCccccc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVE-KTG-NTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQERFR 84 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~~-pt~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 84 (231)
+||+++|.+|||||||++++++..+.. .|. .|++.+. ..+.+++. ...++|||++|..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 799999999999999999999876432 222 1333222 23444442 1579999999987653
Q ss_pred ----hhhh---hcccCCcEEEEEEecC
Q psy5781 85 ----TITQ---SYYRSANGVIIEVTSV 104 (231)
Q Consensus 85 ----~~~~---~~~~~ad~vIlV~dit 104 (231)
.+.. .+++++|++++|+|++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCF 107 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecC
Confidence 2322 3578999999999997
No 192
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.06 E-value=5.3e-10 Score=99.16 Aligned_cols=81 Identities=17% Similarity=0.118 Sum_probs=64.1
Q ss_pred ceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCc-------------HhhHHHHHHHHHHh
Q psy5781 53 TIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVE-------------YCYQRNWHKQAVTL 119 (231)
Q Consensus 53 t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditS-------------f~~l~~w~~~i~~~ 119 (231)
|+|++. ..+.+++ +.++||||+|++.++.+|..|+++++++|+|||++. |+++..|+..+.+.
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 455443 3556665 899999999999999999999999999999999984 56666787777664
Q ss_pred c-CCcceeeecccccCCCC
Q psy5781 120 F-DKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 120 ~-~~~~~~~vv~~k~dl~~ 137 (231)
. ....++++++||.|+..
T Consensus 280 ~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp TTCSSCCEEEEEECHHHHH
T ss_pred ccCCCCeEEEEEEChhhhh
Confidence 2 34566789999999854
No 193
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=102.96 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=52.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe---------------EEEEEEeeCCCcccc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQERF 83 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~ 83 (231)
...++|+++|.+|||||||++++++..+.....|....+.....+.+++. ...+.+||++|....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999987653333333333344445555442 235999999998764
Q ss_pred ch-------hhhhcccCCcEEEEEEecC
Q psy5781 84 RT-------ITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 84 ~~-------~~~~~~~~ad~vIlV~dit 104 (231)
.. ....+++++|++++|+|++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecC
Confidence 43 3567789999999999987
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.01 E-value=6.3e-10 Score=99.17 Aligned_cols=147 Identities=7% Similarity=0.029 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc----cchhhhhc---ccCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER----FRTITQSY---YRSA 94 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~---~~~a 94 (231)
.|+++|.+|||||||++++.+... ...+..|. .......+..++ ...+.+||++|..+ +..+...+ +..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftT-l~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTT-LSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCS-SCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccce-ecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 478999999999999999987642 12222111 011222344443 24688999999732 22222222 4579
Q ss_pred cEEEEEEecC--cHhhHHHHHHHHHHhcC--CcceeeecccccCCCCCccccccchh-hhhhcCCCcccccc--ccchhh
Q psy5781 95 NGVIIEVTSV--EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLAMPQVRPCLFHKFG-HASSSAMPFPQVWP--CLKFGH 167 (231)
Q Consensus 95 d~vIlV~dit--Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~dl~~~~~~~~~~~~-~s~~~~~~~~ev~~--~~nv~e 167 (231)
+.+++|+|++ .++++..|.+++..+.. ...+.++++||+|+... . ...... .....+..+..+++ ..++++
T Consensus 237 ~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 237 RVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred HhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 9999999995 88888889888877643 23445567799998764 1 111111 12223445555554 456777
Q ss_pred hhhhhc
Q psy5781 168 AFSTSL 173 (231)
Q Consensus 168 ~f~~~~ 173 (231)
++....
T Consensus 315 L~~~i~ 320 (416)
T 1udx_A 315 LKEALH 320 (416)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 195
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.94 E-value=2.2e-09 Score=94.02 Aligned_cols=82 Identities=18% Similarity=0.112 Sum_probs=56.2
Q ss_pred cceeeEEEEEEEEECCeEEEEEEeeCCCccccchhhhhcccCCcEEEEEEecCc-------------HhhHHHHHHHHHH
Q psy5781 52 NTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVE-------------YCYQRNWHKQAVT 118 (231)
Q Consensus 52 pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditS-------------f~~l~~w~~~i~~ 118 (231)
+|+|++. ..+.+++ +.+.|||++|++.++..|..|+++++++|+|||++. +++...|+..+.+
T Consensus 187 ~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 4566443 4556654 889999999999999999999999999999999984 4455567766665
Q ss_pred hc-CCcceeeecccccCCCC
Q psy5781 119 LF-DKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 119 ~~-~~~~~~~vv~~k~dl~~ 137 (231)
.. ....++++++||.|+..
T Consensus 263 ~~~~~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLE 282 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHH
T ss_pred chhhCCCCEEEEEEChhhhh
Confidence 42 24556789999999864
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.92 E-value=1e-12 Score=106.90 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=34.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFS 59 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~ 59 (231)
..++|+++|++|||||||+++|+...+...+.++++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 4689999999999999999999988777667788876654
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.78 E-value=4.3e-09 Score=92.38 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCC-----cccceeeEEEEEEEEECC-------------------eEEEEEEee
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDF-VEK-----TGNTIGVDFSMKTVNIDG-------------------KKVKLQIWD 76 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f-~~~-----~~pt~~~~~~~~~~~~~~-------------------~~~~l~i~D 76 (231)
++|+++|.+|||||||++++++... ... ..|+++. +.+.+ ....+++||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~------~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV------VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE------EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee------EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 6899999999999999999987542 122 3345442 12221 235799999
Q ss_pred CCCccccc----hh---hhhcccCCcEEEEEEecC
Q psy5781 77 TAGQERFR----TI---TQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 77 ~~G~~~~~----~~---~~~~~~~ad~vIlV~dit 104 (231)
++|..+.. .+ ...+++.+|++++|+|.+
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCF 110 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECC
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECC
Confidence 99987642 22 223578999999999997
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.76 E-value=3.1e-08 Score=87.09 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=73.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcccc----chh---hhh
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF----RTI---TQS 89 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~---~~~ 89 (231)
+....+|.++|.|+||||||+|++++.+. ..+|.-|. .+.....+.+++ ..+++.|++|--+- ..+ .-.
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT-~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~ 145 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTT-LVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIA 145 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSC-CCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCce-eeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHH
Confidence 44567999999999999999999997553 23343332 234455677777 56889999995321 111 223
Q ss_pred cccCCcEEEEEEecC-cHhhHHHHHHHHHHhcC--CcceeeecccccC
Q psy5781 90 YYRSANGVIIEVTSV-EYCYQRNWHKQAVTLFD--KYKFGHAFSTSLA 134 (231)
Q Consensus 90 ~~~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~--~~~~~~vv~~k~d 134 (231)
.++.+|++++|.|.+ .....+....++..... ..++..++.+|.|
T Consensus 146 ~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d 193 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKE 193 (376)
T ss_dssp HHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECS
T ss_pred HHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhh
Confidence 567899999999999 45555555556654321 2333445555554
No 199
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.61 E-value=5.6e-08 Score=85.92 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=59.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeEEEEEEEEECCe---------------EEEEEEeeCCCc
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGK---------------KVKLQIWDTAGQ 80 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~ 80 (231)
......+|.++|.+|||||||++.+++... .....|....+.....+.+++. ...+.+||++|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 334568999999999999999999998664 3323332222233334555542 135899999995
Q ss_pred cc-------cchhhhhcccCCcEEEEEEecC
Q psy5781 81 ER-------FRTITQSYYRSANGVIIEVTSV 104 (231)
Q Consensus 81 ~~-------~~~~~~~~~~~ad~vIlV~dit 104 (231)
.. .......+++.+|+++.|+|..
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAF 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 32 2223445678999999999986
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.61 E-value=2.7e-08 Score=80.11 Aligned_cols=109 Identities=16% Similarity=0.071 Sum_probs=62.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEE------------EEEEEECC------------------eE
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFS------------MKTVNIDG------------------KK 69 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~------------~~~~~~~~------------------~~ 69 (231)
...+|+++|.+|||||||+++++..........++..++. ...+.++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4579999999999999999999865322211122211110 01111211 23
Q ss_pred EEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcHh-hHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEYC-YQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 70 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~-~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+.+.||||+|+-... ..+....+.+++|+|.+... ....+...+ ..+.++++||.|+..
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~~~~~~~~------~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVVEKHPEIF------RVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHHHHCHHHH------HTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhhhhhhhhh------hcCCEEEEecccCCc
Confidence 567899999852111 11223678999999998332 222222111 244668899999854
No 201
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.48 E-value=2e-08 Score=87.59 Aligned_cols=60 Identities=5% Similarity=-0.082 Sum_probs=38.3
Q ss_pred EEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 70 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+.+.||||+|... .....+..+|++|+|+|.+..+..+.+...+ .....+++.||.|+..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~-----~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGV-----LELADIVVVNKADGEH 231 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTS-----GGGCSEEEEECCCGGG
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhH-----hhcCCEEEEECCCCcC
Confidence 6789999999432 2233458899999999988322222111111 1235678899999864
No 202
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.47 E-value=6.9e-07 Score=82.27 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=78.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC------------------CCCC----CcccceeeEEEEEEEEECCeEEEEEEe
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG------------------DFVE----KTGNTIGVDFSMKTVNIDGKKVKLQIW 75 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~------------------~f~~----~~~pt~~~~~~~~~~~~~~~~~~l~i~ 75 (231)
..+.-+|.|+|..++|||||..+++.. .+.+ +...-+.+......+.+++ +.++|.
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlI 105 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLL 105 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEE
Confidence 346778999999999999999999621 1110 0001111111223344444 789999
Q ss_pred eCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCcc
Q psy5781 76 DTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140 (231)
Q Consensus 76 D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~~ 140 (231)
||||+.+|..-....++-+|++|+|+|.. --+...-|..... ...+.+++.||+|....+.
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDREALHP 169 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSCCCCH
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccchhcch
Confidence 99999999998899999999999999999 4444455644332 3445668899998766443
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.35 E-value=2.4e-06 Score=81.25 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=69.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeE----------------------------------------
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVE-KTGNTIGVD---------------------------------------- 57 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~-~~~pt~~~~---------------------------------------- 57 (231)
....+|+|+|..++|||||++.+++..+.+ ...++....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 456799999999999999999999987622 111110000
Q ss_pred ----------EEEEEEEECCeEEEEEEeeCCCccc-------------cchhhhhcc-cCCcEEEEEEecC-c--HhhHH
Q psy5781 58 ----------FSMKTVNIDGKKVKLQIWDTAGQER-------------FRTITQSYY-RSANGVIIEVTSV-E--YCYQR 110 (231)
Q Consensus 58 ----------~~~~~~~~~~~~~~l~i~D~~G~~~-------------~~~~~~~~~-~~ad~vIlV~dit-S--f~~l~ 110 (231)
.....+...+ ...+.|+||||-.. ...+...|+ ..+|++++|.|.+ . -....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0000111111 12478999999432 223444455 5789999999998 2 22222
Q ss_pred HHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 111 NWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 111 ~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.+...+ .......+++.||.|+...
T Consensus 208 ~ll~~L---~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 208 KIAKEV---DPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHHH---CTTCSSEEEEEECTTSSCT
T ss_pred HHHHHH---HhcCCCEEEEEeCcccCCc
Confidence 233333 3445567789999998653
No 204
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.29 E-value=2.7e-07 Score=77.18 Aligned_cols=57 Identities=18% Similarity=0.381 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 82 (231)
++|+++|.+|||||||++++.+..... ..++.|.+.....+.++. .+.||||+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999776532 345555444333333332 578999999764
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.19 E-value=9.4e-06 Score=76.87 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=77.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC--------CCCC--Cccc------ceeeE--EEEEEEEEC-----CeEEEEEEe
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG--------DFVE--KTGN------TIGVD--FSMKTVNID-----GKKVKLQIW 75 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~--------~f~~--~~~p------t~~~~--~~~~~~~~~-----~~~~~l~i~ 75 (231)
++.-+|.|+|.-..|||||..+++.. +... .+.. .-|+. .....+.+. .+.+.++|.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 56778999999999999999998621 1000 0100 00111 111222332 136899999
Q ss_pred eCCCccccchhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 76 DTAGQERFRTITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 76 D~~G~~~~~~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
||||+.+|..-....++-+|++|+|+|.. .-+...-|.....+ ..+.+++.||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccCc
Confidence 99999999998899999999999999999 44444555555443 3345688899887653
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.19 E-value=2.3e-06 Score=70.51 Aligned_cols=68 Identities=7% Similarity=-0.176 Sum_probs=39.5
Q ss_pred EEEEEeeCCCccccchhhh------hcccCCcEEEEEEecC---cHhhHHHHHH-HHHHhcCCcceeeecccccCCCCC
Q psy5781 70 VKLQIWDTAGQERFRTITQ------SYYRSANGVIIEVTSV---EYCYQRNWHK-QAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 70 ~~l~i~D~~G~~~~~~~~~------~~~~~ad~vIlV~dit---Sf~~l~~w~~-~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
+.+.||||+|+.+...... .++.. +++|++.|.+ +......... ..........+..+++||.|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 5799999999876543322 24456 8888888876 2222221111 111112223445689999998653
No 207
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.16 E-value=1.7e-06 Score=73.12 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=36.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCcc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 81 (231)
...++|+++|.+|||||||+|++.+..... ..++.+.+.....+.++. .+.+|||+|..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 356899999999999999999999765322 223333322222333332 47899999964
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.10 E-value=1.8e-06 Score=75.00 Aligned_cols=60 Identities=5% Similarity=-0.104 Sum_probs=33.5
Q ss_pred EEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 70 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+.+.|+||+|.... .......+|++++|+|.+..+..+.....+ . ....+++.||.|+..
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~~i---l--~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKRGI---I--EMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------C--CSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHHHH---H--hcCCEEEEeeecCCC
Confidence 56789999995321 133467899999999998322222111111 1 224567789998853
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.05 E-value=8.2e-07 Score=83.19 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=75.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc--CCCCC-----------Cccc---ceeeEEEEEEEEECCeEEEEEEeeCCCccccc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS--GDFVE-----------KTGN---TIGVDFSMKTVNIDGKKVKLQIWDTAGQERFR 84 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~--~~f~~-----------~~~p---t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 84 (231)
.-+|.++|....|||||..+++. +.... ++.+ .-|+......+.+..+.+.++|.||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 45789999999999999999972 21110 1110 00111111222223344779999999999999
Q ss_pred hhhhhcccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 85 TITQSYYRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 85 ~~~~~~~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
......++-+|++|+|+|.. .-+...-|....... .+.+++.||.|.....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~----lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG----IPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT----CSCEECCEECCSSSCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC----CCeEEEEeccccccCC
Confidence 98899999999999999999 334444555444332 2345778998876543
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.01 E-value=8.7e-07 Score=76.77 Aligned_cols=60 Identities=12% Similarity=-0.121 Sum_probs=36.3
Q ss_pred EEEEEeeCCCccccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 70 VKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 70 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
+.+.||||+|...... ...+.+|++++|+|.+..+.++...... .....+++.||.|+..
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~~-----~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGL-----MEVADLIVINKDDGDN 208 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHH-----HHHCSEEEECCCCTTC
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHhh-----hcccCEEEEECCCCCC
Confidence 5799999999654332 2458999999999998333221111011 1234568899999865
No 211
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.00 E-value=2.2e-07 Score=83.95 Aligned_cols=100 Identities=9% Similarity=0.030 Sum_probs=64.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccc--cchhh--------h
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER--FRTIT--------Q 88 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~--------~ 88 (231)
...++|+++|.+|+||||+.+++....... ..++...+.........+......+||..|++. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999998653211 223333211100011112223457899998742 23332 5
Q ss_pred hcccCCcEEEEEEecC--cHhhHHHHHHHHHHh
Q psy5781 89 SYYRSANGVIIEVTSV--EYCYQRNWHKQAVTL 119 (231)
Q Consensus 89 ~~~~~ad~vIlV~dit--Sf~~l~~w~~~i~~~ 119 (231)
.++..+.+.++|+|.+ +.+..+.|+..+++.
T Consensus 116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 6677788999999999 888888888877664
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.84 E-value=6.4e-05 Score=63.88 Aligned_cols=56 Identities=13% Similarity=-0.071 Sum_probs=47.2
Q ss_pred ccccchhhhhcccCCcEEEEEEecC----cHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 80 QERFRTITQSYYRSANGVIIEVTSV----EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 80 ~~~~~~~~~~~~~~ad~vIlV~dit----Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
++++..+.+.+++++|++++|||++ +++.+.+|+..+.. ...+.++++||.|+...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCc
Confidence 6777788889999999999999998 78888999987765 44567799999998754
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.68 E-value=7.6e-05 Score=62.46 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++++|++|+|||||++.+++-
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999999853
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.65 E-value=0.00022 Score=63.52 Aligned_cols=59 Identities=24% Similarity=0.481 Sum_probs=34.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeEEEEEEEEE--CCeEEEEEEeeCCCc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEK----TGNTIGVDFSMKTVNI--DGKKVKLQIWDTAGQ 80 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~----~~pt~~~~~~~~~~~~--~~~~~~l~i~D~~G~ 80 (231)
..++++|+|.+|+|||||++.+++-.+... ..+... .....+.. .+-...+.++|+.|-
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~--~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQ--LQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCE--EEEEEEEEEC--CEEEEEEEEEECC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccce--EeeEEEEeecCccccccchhhhhhh
Confidence 356799999999999999999987654221 112111 11111122 222347889998764
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.55 E-value=8.4e-05 Score=64.96 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccchh--------hh
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGDFV-----EKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTI--------TQ 88 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~f~-----~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~ 88 (231)
.+|+++|.+|||||||+|++++.... ....+..+.+.....+.++.. +.++||+|-.....+ ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 57999999999999999999875311 111222332333334444432 789999996432211 11
Q ss_pred hc--ccCCcEEEEEEecC---cHhhHHHHHHHHHHhcCCcceeeecccccCCCCCc
Q psy5781 89 SY--YRSANGVIIEVTSV---EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVR 139 (231)
Q Consensus 89 ~~--~~~ad~vIlV~dit---Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~~ 139 (231)
.+ ....+.++++.+.. -...+.. +........+..++.+|.|..+..
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEE
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccc
Confidence 11 24667788888874 1111111 111122344456777887766543
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.51 E-value=8.6e-05 Score=67.53 Aligned_cols=115 Identities=11% Similarity=0.117 Sum_probs=62.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHH------cCCCC----CCcccce-----------eeEEEEEEEE-------------
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFR------SGDFV----EKTGNTI-----------GVDFSMKTVN------------- 64 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~------~~~f~----~~~~pt~-----------~~~~~~~~~~------------- 64 (231)
.....|+++|.+||||||+++++. +.+.. +.+.|.. +++++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 32210 0111110 1111110000
Q ss_pred ECCeEEEEEEeeCCCccccch-hhh---hc--ccCCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 65 IDGKKVKLQIWDTAGQERFRT-ITQ---SY--YRSANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 65 ~~~~~~~l~i~D~~G~~~~~~-~~~---~~--~~~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
.....+.+.|+||+|...... +.. .. ...+|.+++|.|.+ ..+.+ .....+.+. .++..++.||.|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~-~~a~~~~~~---~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE-AQAKAFKDK---VDVASVIVTKLDGHA 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH-HHHHHHHHH---HCCCCEEEECTTSCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH-HHHHHHHhh---cCceEEEEeCCcccc
Confidence 000236789999999753221 111 11 22789999999998 33322 222333321 233467889988764
No 217
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.50 E-value=9.6e-05 Score=68.44 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=39.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-----cceeeEEEEEEEEE-CCeEEEEEEeeCCCccc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTG-----NTIGVDFSMKTVNI-DGKKVKLQIWDTAGQER 82 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~~f~~~~~-----pt~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~ 82 (231)
...++|+|+|.+|||||||+|++++....-.+. .|.++.. +...+ ......+.|+||+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~--~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM--WCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEE--EEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEE--eecccccCCCceEEEecCCCcCc
Confidence 456899999999999999999999876321222 2333211 11111 12235688999999653
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.49 E-value=8.1e-05 Score=65.06 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC-----CCCCCcccceeeEEEEEEEEECCeEEEEEEeeCCCccccch--------hhh
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG-----DFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRT--------ITQ 88 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~-----~f~~~~~pt~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~ 88 (231)
.+|+++|.+|||||||+|.+++. .... ..+..+.+.....+.++.. +.++||+|-..... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 47999999999999999999975 1110 1111122223333444432 78999999542221 112
Q ss_pred hcc--cCCcEEEEEEecC-c--HhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 89 SYY--RSANGVIIEVTSV-E--YCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 89 ~~~--~~ad~vIlV~dit-S--f~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.++ +..+.++++.+.. + +..+.. +...........++.+|.|..+.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccc
Confidence 222 5678899999984 1 112111 11112233445677788776553
No 219
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.48 E-value=8.2e-05 Score=64.24 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~ 42 (231)
-..|.++|.+|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999997
No 220
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.18 E-value=0.00013 Score=58.96 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=34.7
Q ss_pred CCCccccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHH---HHhcCC-----cceeeeccccc-CCCCC
Q psy5781 77 TAGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQA---VTLFDK-----YKFGHAFSTSL-AMPQV 138 (231)
Q Consensus 77 ~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i---~~~~~~-----~~~~~vv~~k~-dl~~~ 138 (231)
.+||+.++.+|++||.++|++|+|.|.+.-+.+. ...++ .+...+ ..+.++++||. |++..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 3589999999999999999999999999222221 33333 444432 23566777873 56543
No 221
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.65 E-value=0.0011 Score=51.85 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
+++++|++|+|||||++.+.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.59 E-value=0.0016 Score=58.22 Aligned_cols=115 Identities=19% Similarity=0.133 Sum_probs=63.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc------CCC----CCCccc-----------ceeeEEEEEEEEEC------------
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS------GDF----VEKTGN-----------TIGVDFSMKTVNID------------ 66 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~------~~f----~~~~~p-----------t~~~~~~~~~~~~~------------ 66 (231)
....|+++|.+||||||++..+.. .+. .+.+.+ ..+++++......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988863 111 001111 11211211000000
Q ss_pred -CeEEEEEEeeCCCccccch-----hhh-hcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCC
Q psy5781 67 -GKKVKLQIWDTAGQERFRT-----ITQ-SYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137 (231)
Q Consensus 67 -~~~~~l~i~D~~G~~~~~~-----~~~-~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~ 137 (231)
...+.+.|.||+|...... +.. .....+|.++||.|.+.-.+.......+.+ ...+..++.||+|...
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~---~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE---ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH---SCTTEEEEEECCSSCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh---hCCCeEEEEECCCCcc
Confidence 0126788999999543221 110 112357899999999933333333333332 3345568889988764
No 223
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.57 E-value=0.00092 Score=56.52 Aligned_cols=62 Identities=8% Similarity=-0.042 Sum_probs=38.8
Q ss_pred CCCccccchhhhhcccCCcEEEEEEecCcHhhH--HHHHHHHHHhcC-----Ccceeeecccc-cCCCCC
Q psy5781 77 TAGQERFRTITQSYYRSANGVIIEVTSVEYCYQ--RNWHKQAVTLFD-----KYKFGHAFSTS-LAMPQV 138 (231)
Q Consensus 77 ~~G~~~~~~~~~~~~~~ad~vIlV~ditSf~~l--~~w~~~i~~~~~-----~~~~~~vv~~k-~dl~~~ 138 (231)
.+||+.++.+|++||.++|++|+|+|.+.-+++ ..-+.++..... ...+.++.+|| -|++..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 478999999999999999999999999932222 222222223222 33456677776 466543
No 224
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.55 E-value=0.0012 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999853
No 225
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.46 E-value=0.0015 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.39 E-value=0.003 Score=56.31 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=38.4
Q ss_pred EEEEEEeeCCCccccch-hh-----hhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCc-ceeeecccccCCCC
Q psy5781 69 KVKLQIWDTAGQERFRT-IT-----QSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKY-KFGHAFSTSLAMPQ 137 (231)
Q Consensus 69 ~~~l~i~D~~G~~~~~~-~~-----~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~-~~~~vv~~k~dl~~ 137 (231)
.+.+.|.||+|...... +. -.....+|.+++|.|.+.-.+..... ....... ++..++.||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~---~~~~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQA---KAFKEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHH---HHHHTTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHH---HHHhhcccCCeEEEEeCCCCcc
Confidence 36789999999754211 11 11223689999999998222222222 2222333 44678889988754
No 227
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.35 E-value=0.0018 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
++++|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999853
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.32 E-value=0.004 Score=55.69 Aligned_cols=63 Identities=25% Similarity=0.313 Sum_probs=40.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC------------------CCC---CCcccceeeEEEEEEE--E-ECCeEEEEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG------------------DFV---EKTGNTIGVDFSMKTV--N-IDGKKVKLQI 74 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~------------------~f~---~~~~pt~~~~~~~~~~--~-~~~~~~~l~i 74 (231)
....-|.|+|..++|||+|+|++++. .|. .....|.|+-.....+ . .++....+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 45677899999999999999999852 232 1122344532221111 1 1456788999
Q ss_pred eeCCCcc
Q psy5781 75 WDTAGQE 81 (231)
Q Consensus 75 ~D~~G~~ 81 (231)
.||.|..
T Consensus 145 lDTeG~~ 151 (447)
T 3q5d_A 145 MDTQGTF 151 (447)
T ss_dssp EEEECCC
T ss_pred EcCCccc
Confidence 9999954
No 229
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.32 E-value=0.0022 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|||+|++|||||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999853
No 230
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.27 E-value=0.0022 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|+++|++|+|||||++.+.+-
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999854
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.24 E-value=0.0023 Score=51.68 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999998864
No 232
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.24 E-value=0.0024 Score=50.90 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|+++|++|+|||||++.++..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999853
No 233
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.20 E-value=0.0026 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|+++|.+|+|||||++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 234
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.20 E-value=0.0025 Score=50.56 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
=-++++|++|+|||||++.+.+-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999998753
No 235
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.16 E-value=0.0023 Score=49.26 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy5781 23 KVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~ 42 (231)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 236
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.12 E-value=0.0029 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999863
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.11 E-value=0.003 Score=50.23 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|+++|++|+|||||++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999865
No 238
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.05 E-value=0.0065 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
No 239
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.03 E-value=0.0035 Score=47.99 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
-+.++|+.|+|||||++.+.+-.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998653
No 240
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.99 E-value=0.0049 Score=48.39 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=22.9
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 14 ~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+.........|++.|.+|+||||+.+.+..
T Consensus 13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp ---CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 333445557899999999999999998864
No 241
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.99 E-value=0.0058 Score=47.91 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.....|++.|.+|+||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998874
No 242
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.98 E-value=0.005 Score=47.08 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.|+++|.+|+||||+++.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 243
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.87 E-value=0.0047 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|+++|.+|+|||||++++...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999753
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.85 E-value=0.0044 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.-..|.|+|++|+|||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998874
No 245
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.81 E-value=0.0053 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|++.|.+|+||||+.+.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
No 246
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.81 E-value=0.012 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999998864
No 247
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.79 E-value=0.0055 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 248
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.78 E-value=0.0051 Score=47.71 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-|+++|.+|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 249
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.76 E-value=0.0085 Score=47.19 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=24.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 14 QDDSYDFLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 14 ~~~~~~~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
--+.......|.++|.+|+||||+++.+...
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3344455578999999999999999998864
No 250
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.74 E-value=0.0053 Score=48.06 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
-.|+++|.+|+||||+++.+...-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999988643
No 251
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.74 E-value=0.0056 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|+++|.+|+||||+++.+...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999998753
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.74 E-value=0.005 Score=50.19 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
.+.++|++|+|||||++.+.+- ..|+.| .+.++|.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl-----~~p~~G------~I~~~g~ 67 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL-----DKPTEG------EVYIDNI 67 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS-----SCCSEE------EEEETTE
T ss_pred EEEEECCCCCcHHHHHHHHhcC-----CCCCce------EEEECCE
Confidence 4789999999999999988743 335555 4556664
No 253
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.72 E-value=0.0062 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~ 42 (231)
-.|+++|.+|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 254
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.71 E-value=0.005 Score=48.53 Aligned_cols=21 Identities=43% Similarity=0.689 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
++.++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999998875
No 255
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.67 E-value=0.0096 Score=50.57 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccccee
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG 55 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~ 55 (231)
.+.++|++|+|||||++.+.+- +.|+.|
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl-----~~p~~G 109 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF-----YDISSG 109 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS-----SCCSEE
T ss_pred EEEEECCCCchHHHHHHHHHcC-----CCCCCc
Confidence 6899999999999999877643 345555
No 256
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.67 E-value=0.0063 Score=49.79 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
.+.++|++|+|||||++.+.+- ..|+.| .+.++|.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl-----~~p~~G------~i~~~g~ 60 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI-----VKPDRG------EVRLNGA 60 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS-----SCCSEE------EEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----CCCCce------EEEECCE
Confidence 4789999999999999998854 235555 4456664
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.66 E-value=0.0053 Score=49.63 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
.+.++|++|+|||||++.+.+- ..|+.| .+.++|.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl-----~~p~~G------~i~~~g~ 66 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL-----DAPTEG------KVFLEGK 66 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS-----SCCSEE------EEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcC-----CCCCce------EEEECCE
Confidence 4789999999999999988753 235555 4556664
No 258
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.65 E-value=0.0062 Score=47.90 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.|+++|.+|+|||||++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 259
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.64 E-value=0.0072 Score=48.76 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=20.1
Q ss_pred CCceeeE-EEEEcCCCCcHHHHHHHHHc
Q psy5781 17 SYDFLFK-VVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 17 ~~~~~~k-IvvlG~~~vGKTSLl~~~~~ 43 (231)
......| |+++|++|+||+|...++..
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3334445 45689999999999988864
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.64 E-value=0.0068 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.++++|.+|||||||++.+++..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999754
No 261
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.63 E-value=0.0065 Score=48.90 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy5781 23 KVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~ 42 (231)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.62 E-value=0.0066 Score=45.76 Aligned_cols=20 Identities=20% Similarity=0.286 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q psy5781 22 FKVVLIGDCGVGKTCVVHRF 41 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~ 41 (231)
.-|++.|.+|+||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 263
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.61 E-value=0.018 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999998854
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.60 E-value=0.0072 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 265
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.56 E-value=0.0064 Score=50.40 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
-+.++|++|+|||||++.+.+- ..|+.| .+.++|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl-----~~p~~G------~i~~~g~ 68 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL-----EKPSEG------AIIVNGQ 68 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS-----SCCSEE------EEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcC-----CCCCCc------EEEECCE
Confidence 4789999999999999988753 235555 4556664
No 266
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.53 E-value=0.0069 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
.++++|++|+|||||++.+.+- ..|+.| .+.++|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl-----~~p~~G------~I~~~g~ 71 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY-----LKPLKG------EIIYNGV 71 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS-----SCCSEE------EEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcC-----CCCCCe------EEEECCE
Confidence 3689999999999999988754 235555 4556664
No 267
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.52 E-value=0.015 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3789999999999999999854
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.51 E-value=0.0074 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.50 E-value=0.0085 Score=47.43 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 270
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.47 E-value=0.0077 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|+++|.+|+||||+++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 271
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.47 E-value=0.007 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.47 E-value=0.0087 Score=47.40 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+|+++|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 273
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.47 E-value=0.0077 Score=49.43 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.47 E-value=0.008 Score=49.15 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 275
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.46 E-value=0.0063 Score=52.98 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=46.5
Q ss_pred CccccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 79 GQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 79 G~~~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
.++.|+.+++.+++.++++++|+|++.++ ..|.+++.+... ..+.++++||.|+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~~-~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFVG-NNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHSS-SSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHhC-CCcEEEEEEChhcCCc
Confidence 46789999999999999999999999654 678888888765 4556789999998653
No 276
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.45 E-value=0.0062 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.++++|++|+|||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988753
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.45 E-value=0.0082 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|++.|.+|+||||+.+.+...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998753
No 278
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.45 E-value=0.0088 Score=46.53 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 279
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.45 E-value=0.017 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-+.++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4689999999999999988753
No 280
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.43 E-value=0.0074 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.++..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 281
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.43 E-value=0.0076 Score=50.05 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
.+.++|++|+|||||++.+.+- ..|+.| .+.++|+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl-----~~p~~G------~I~~~g~ 86 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL-----EDFDEG------EIIIDGI 86 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS-----SCCSEE------EEEETTE
T ss_pred EEEEEcCCCCcHHHHHHHHHcC-----CCCCCc------EEEECCE
Confidence 4789999999999999988753 235555 4556664
No 282
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.42 E-value=0.0092 Score=45.93 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.|++.|.+|+||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 283
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.42 E-value=0.0086 Score=49.73 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 284
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.41 E-value=0.0085 Score=49.21 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
.+.++|++|+|||||++.+.+-. .+.|+.| .+.++|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl~---~~~p~~G------~I~~~g~ 67 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGDP---EYTVERG------EILLDGE 67 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCT---TCEEEEE------EEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCCCce------EEEECCE
Confidence 47899999999999999998641 1334444 4566664
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.41 E-value=0.0091 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
...|.++|++|+|||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 286
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.41 E-value=0.0076 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988753
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.40 E-value=0.0087 Score=48.49 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 288
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.39 E-value=0.0079 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988853
No 289
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.38 E-value=0.0055 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=15.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~ 42 (231)
--|+++|++|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999998
No 290
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.38 E-value=0.008 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988754
No 291
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.38 E-value=0.009 Score=45.43 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988754
No 292
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.38 E-value=0.0089 Score=46.85 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.+|+++|.+|+||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 293
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.36 E-value=0.0087 Score=50.55 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy5781 23 KVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~ 42 (231)
.++++|.+|||||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999998
No 294
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.34 E-value=0.0094 Score=46.35 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
--++++|.+|+|||||+++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999854
No 295
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.34 E-value=0.0085 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.33 E-value=0.0092 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988754
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.31 E-value=0.0094 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998753
No 298
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.30 E-value=0.0062 Score=50.08 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=21.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
..+...|++.|..|+||||+++.+...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345578999999999999999887643
No 299
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.29 E-value=0.0089 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
..+.++|++|+|||||++.+.+-
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999873
No 300
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.29 E-value=0.0096 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.28 E-value=0.0077 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998854
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.27 E-value=0.0098 Score=46.71 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.--|+++|.+|+|||||++.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 303
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.25 E-value=0.011 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 304
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.25 E-value=0.0085 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998643
No 305
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.24 E-value=0.015 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998854
No 306
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.24 E-value=0.011 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHH
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRF 41 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~ 41 (231)
..+.+||+++|.+|+|||||++++
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 356899999999999999999887
No 307
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.23 E-value=0.01 Score=49.18 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.++++|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999998875
No 308
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.18 E-value=0.013 Score=45.11 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 309
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.18 E-value=0.0099 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 310
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.18 E-value=0.0098 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.-+++++|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
No 311
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.17 E-value=0.0099 Score=49.30 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988753
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.17 E-value=0.013 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
..+|+++|.+|+||||+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999988754
No 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.16 E-value=0.014 Score=45.06 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 314
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.15 E-value=0.016 Score=45.40 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+.+.+..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 315
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.14 E-value=0.0039 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.++++|.+|||||||++.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 37899999999999999999864
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.13 E-value=0.015 Score=45.73 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+.|.++|.+|+||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 317
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.11 E-value=0.012 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 318
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.10 E-value=0.014 Score=46.99 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
...+|+++|.+|+||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998874
No 319
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.10 E-value=0.017 Score=44.44 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
...|+++|.+|+||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.10 E-value=0.014 Score=45.43 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.....|+++|.+|+||||+.+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999864
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.10 E-value=0.013 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.+|.++|.+|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 322
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.09 E-value=0.012 Score=49.96 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.++|+|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999998874
No 323
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.09 E-value=0.015 Score=47.28 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
...+|++.|.+|+||||+.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 324
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.97 E-value=0.014 Score=46.20 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998874
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.96 E-value=0.016 Score=46.10 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.+|+++|.+|+||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998874
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.95 E-value=0.015 Score=46.57 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|+++|.+|+||||+.+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 327
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.94 E-value=0.014 Score=46.10 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-++++|++|+|||+|++.++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999874
No 328
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.93 E-value=0.0075 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|.++|.+|+|||||++.++.-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998753
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.93 E-value=0.018 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
...|++.|.+|+||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 330
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.018 Score=44.98 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 331
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.90 E-value=0.014 Score=50.54 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998854
No 332
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.89 E-value=0.022 Score=43.78 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 333
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.86 E-value=0.014 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988753
No 334
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.85 E-value=0.017 Score=46.03 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+|+++|+||+||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 335
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.84 E-value=0.014 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~ 42 (231)
.-.|+++|++|+||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3478899999999999999886
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.84 E-value=0.015 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998854
No 337
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.84 E-value=0.015 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999998854
No 338
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.81 E-value=0.016 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..+|+++|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 339
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.80 E-value=0.023 Score=48.22 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.....-|.|+|++|+|||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34556899999999999999998875
No 340
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.80 E-value=0.018 Score=46.70 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
....|.++|++|+|||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998875
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.79 E-value=0.019 Score=44.09 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.|+++|.+|+||||+.+.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998873
No 342
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.78 E-value=0.016 Score=47.10 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999854
No 343
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.76 E-value=0.012 Score=44.67 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988754
No 344
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.75 E-value=0.02 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
..|++.|.+|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 345
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.74 E-value=0.03 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
++.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 346
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.74 E-value=0.016 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..--++++|++|+||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999998863
No 347
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.73 E-value=0.026 Score=43.53 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
....|+++|.+|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 348
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.73 E-value=0.017 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999998754
No 349
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.72 E-value=0.022 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
...-|++.|.+|+||||+++.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999974
No 350
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.71 E-value=0.017 Score=44.17 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+|+++|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.70 E-value=0.02 Score=43.15 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.67 E-value=0.018 Score=44.54 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 353
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.66 E-value=0.012 Score=44.33 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 354
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.66 E-value=0.035 Score=51.05 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
++.++|++|+|||||++.+.+- +.|+.| .+.++|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~-----~~p~~G------~i~~~g~ 405 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF-----YDIDEG------HILMDGH 405 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT-----TCCSEE------EEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhhc-----cCCCCC------eEEECCE
Confidence 6899999999999999988753 445555 4556663
No 355
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.64 E-value=0.017 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..--|+++|++|+||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.63 E-value=0.016 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 357
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.63 E-value=0.018 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999863
No 358
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.60 E-value=0.022 Score=45.59 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 359
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.57 E-value=0.0081 Score=47.30 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 360
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.57 E-value=0.019 Score=45.52 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.+++.|++|+|||+|++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 361
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.55 E-value=0.014 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999998854
No 362
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.52 E-value=0.022 Score=44.02 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+.+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 363
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.47 E-value=0.022 Score=44.75 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-++++|++|+|||+|+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.47 E-value=0.027 Score=47.31 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHH
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~ 42 (231)
.....|.|+|.+|+|||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999998775
No 365
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.46 E-value=0.021 Score=44.88 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 366
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.46 E-value=0.019 Score=47.87 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||||++.++..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998743
No 367
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.44 E-value=0.023 Score=45.42 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|++|+|||+|+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 368
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.42 E-value=0.027 Score=43.58 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|.++|.+|+|||||+.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999885
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.42 E-value=0.025 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+++.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 370
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.40 E-value=0.023 Score=44.22 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
+++.|++|+|||+|++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988753
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.38 E-value=0.025 Score=43.46 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 372
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.37 E-value=0.024 Score=43.86 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
...|++.|.+|+||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988874
No 373
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.37 E-value=0.017 Score=44.17 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=15.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 374
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.36 E-value=0.032 Score=47.67 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=21.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
....+-|.++|++|+|||||++.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988753
No 375
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.35 E-value=0.024 Score=43.45 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.+++|++|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998753
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.35 E-value=0.028 Score=44.20 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
....|.++|.+|+|||||++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 377
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.34 E-value=0.016 Score=46.64 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.-|++.|.+|+|||||++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999988754
No 378
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.32 E-value=0.024 Score=46.51 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-|+|+|.+|+|||||.+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 379
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.32 E-value=0.022 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.+.++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 578999999999999998875
No 380
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.32 E-value=0.024 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.....|+++|.+|+||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 381
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.31 E-value=0.022 Score=48.52 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998753
No 382
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.30 E-value=0.024 Score=46.86 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|+++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999854
No 383
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.30 E-value=0.023 Score=49.28 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.|+|+|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998864
No 384
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.27 E-value=0.037 Score=51.07 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
.+.++|++|+|||||++.+.+- +.|+.| .+.++|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~-----~~p~~G------~i~~~g~ 406 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL-----YDPASG------TISLDGH 406 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS-----SCCSEE------EEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcC-----cCCCCc------EEEECCE
Confidence 6889999999999999988753 345555 4456663
No 385
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.25 E-value=0.024 Score=48.88 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998763
No 386
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.22 E-value=0.031 Score=47.15 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
....|.++|.+|+|||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998875
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.22 E-value=0.029 Score=42.42 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 388
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.18 E-value=0.025 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..--|+++|.+|+||||++..+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999998864
No 389
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.14 E-value=0.031 Score=45.65 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~ 42 (231)
..|.++|.+|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.13 E-value=0.029 Score=42.97 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|+++|.+|+||||+++.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.12 E-value=0.025 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+++-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999854
No 392
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.11 E-value=0.035 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 393
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.09 E-value=0.044 Score=50.62 Aligned_cols=35 Identities=34% Similarity=0.473 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
++.++|++|+|||||++.+.+- +.|+.| .+.++|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~-----~~p~~G------~i~~~g~ 417 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF-----YDVDRG------QILVDGI 417 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS-----SCCSEE------EEEETTE
T ss_pred EEEEECCCCCcHHHHHHHHhcC-----cCCCCe------EEEECCE
Confidence 7899999999999999987743 455555 4455663
No 394
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.09 E-value=0.026 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..--|+|+|.+|+|||||++.+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345689999999999999998863
No 395
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.05 E-value=0.03 Score=43.71 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988753
No 396
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.04 E-value=0.029 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|+++|++|+|||+|++.+...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999998753
No 397
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.02 E-value=0.029 Score=48.77 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.|+++|++|+|||||++.+++
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
No 398
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.98 E-value=0.037 Score=50.90 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
.+.++|++|+|||||++.+.+- +.|+.| .+.++|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~-----~~p~~G------~i~~~g~ 403 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF-----YDVTSG------QILIDGH 403 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS-----SCCSEE------EEEETTE
T ss_pred EEEEECCCCChHHHHHHHHhcC-----CCCCCc------EEEECCE
Confidence 6889999999999999866633 456666 4566663
No 399
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.98 E-value=0.02 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
.|+|+|++|+|||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998754
No 400
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.98 E-value=0.037 Score=45.03 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
....+.|.|.|.+|+||||+.+.+..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998865
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.97 E-value=0.039 Score=43.67 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.+.|++.|.+|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.95 E-value=0.032 Score=45.09 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
...-|++.|.+|+||||+++++...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998753
No 403
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.94 E-value=0.037 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=22.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHH
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~ 42 (231)
..+.+|++++|..++||||+++++-
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 4568999999999999999998874
No 404
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.024 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++|+|++|+|||||++.+++-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999988753
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.89 E-value=0.036 Score=42.54 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.|+++|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988864
No 406
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.81 E-value=0.027 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998854
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.80 E-value=0.035 Score=43.87 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.-|+++|.+|+||||+++.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 408
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.80 E-value=0.1 Score=46.60 Aligned_cols=63 Identities=25% Similarity=0.324 Sum_probs=40.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHH---H---------------cCCCC---CCcccceeeEEEEEEE--EE-CCeEEEEEE
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRF---R---------------SGDFV---EKTGNTIGVDFSMKTV--NI-DGKKVKLQI 74 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~---~---------------~~~f~---~~~~pt~~~~~~~~~~--~~-~~~~~~l~i 74 (231)
....=|.|+|..++|||.|+|.+ + ...|. ....-|.|+......+ .. +|....+-+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 34556669999999999999954 4 12332 1233466654432222 22 677889999
Q ss_pred eeCCCcc
Q psy5781 75 WDTAGQE 81 (231)
Q Consensus 75 ~D~~G~~ 81 (231)
.||-|..
T Consensus 145 lDTEG~~ 151 (457)
T 4ido_A 145 MDTQGTF 151 (457)
T ss_dssp EEECCBT
T ss_pred EeccCCC
Confidence 9999854
No 409
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.74 E-value=0.036 Score=44.32 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-++++|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888864
No 410
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.73 E-value=0.026 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++++|..|+|||||++.+++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999964
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.65 E-value=0.067 Score=44.50 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHH
Q psy5781 18 YDFLFKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 18 ~~~~~kIvvlG~~~vGKTSLl~~~~ 42 (231)
....+.|+|.|.+|+||||+.+.+.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999987
No 412
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.64 E-value=0.036 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
++.++|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999998865
No 413
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.62 E-value=0.037 Score=45.73 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-++++|++|+|||+|+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999874
No 414
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.57 E-value=0.038 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999999754
No 415
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.57 E-value=0.039 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++|.|+.|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999999854
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.56 E-value=0.037 Score=49.00 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|+|+|++|+|||||++.+++-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998753
No 417
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.54 E-value=0.036 Score=47.15 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-+++.|++|+|||+|++.+...
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 418
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.52 E-value=0.047 Score=43.95 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=21.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 17 SYDFLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 17 ~~~~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
+......|+++|.+|+||||+.+.+..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444567899999999999999998874
No 419
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.51 E-value=0.042 Score=44.46 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
--|++.|++|+|||+|++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.43 E-value=0.038 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.|+++|.+|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 421
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.39 E-value=0.042 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
--|++.|++|+|||+|++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999853
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.38 E-value=0.047 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.36 E-value=0.053 Score=44.13 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..+.|++.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998863
No 424
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.34 E-value=0.054 Score=40.88 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.|++.|.+|+||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 425
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.32 E-value=0.056 Score=49.85 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccccee
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG 55 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~ 55 (231)
++.++|++|+|||||++.+.+- +.|+.|
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~-----~~~~~G 398 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL-----IDPERG 398 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS-----SCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----ccCCCc
Confidence 6899999999999999877643 445555
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.30 E-value=0.048 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
..|++.|.+|+||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 427
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.30 E-value=0.042 Score=46.25 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-++|.|+.|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999754
No 428
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.26 E-value=0.056 Score=40.59 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy5781 24 VVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~ 42 (231)
.+++|++|+|||+|+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999998864
No 429
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.20 E-value=0.054 Score=40.19 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
..|++.|++|+|||++++.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999887643
No 430
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.19 E-value=0.046 Score=46.02 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-+++.|++|+|||+|++.+...
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999988753
No 431
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.13 E-value=0.046 Score=46.00 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=36.2
Q ss_pred EEEEEeeCCCccccch--hh--hhccc--CCcEEEEEEecC-cHhhHHHHHHHHHHhcCCcceeeecccccCCC
Q psy5781 70 VKLQIWDTAGQERFRT--IT--QSYYR--SANGVIIEVTSV-EYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMP 136 (231)
Q Consensus 70 ~~l~i~D~~G~~~~~~--~~--~~~~~--~ad~vIlV~dit-Sf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~ 136 (231)
+.+.|.||+|...... +. ...+. ..+.+++|.|.+ ..+.+..+.+.+. .-....++.+|.|..
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~----~l~~~giVltk~D~~ 252 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS----SVPVNQYIFTKIDET 252 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS----SSCCCEEEEECTTTC
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh----cCCCCEEEEeCCCcc
Confidence 5688999998654321 11 12222 367888899888 5555655544432 223344566777654
No 432
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.06 E-value=0.047 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|+|+|++|+|||||++.+++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998753
No 433
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.06 E-value=0.051 Score=46.46 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+++.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998854
No 434
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.05 E-value=0.053 Score=44.88 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 435
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.00 E-value=0.051 Score=45.47 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
..-+++.|++|+|||+|++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345777899999999999998753
No 436
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.00 E-value=0.06 Score=42.93 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
..|+++|++|+|||+|...+...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998654
No 437
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.95 E-value=0.068 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
...+++.|++|+|||+|++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999986653
No 438
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.94 E-value=0.053 Score=48.89 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-+.++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998863
No 439
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.83 E-value=0.057 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|++.|++|+|||+|++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999998854
No 440
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.77 E-value=0.067 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
--|+|+|+.|+|||+|...+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999854
No 441
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.73 E-value=0.049 Score=46.20 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy5781 24 VVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~ 43 (231)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.68 E-value=0.057 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-+.++|++|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998863
No 443
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.68 E-value=0.064 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~ 42 (231)
.--|+++|.+|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3468899999999999998886
No 444
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.66 E-value=0.063 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999853
No 445
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.61 E-value=0.019 Score=49.85 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=44.7
Q ss_pred CCccccchhhhhcccCCcEEEEEEecCcHhhHHHHHHHHHHhcCCcceeeecccccCCCCC
Q psy5781 78 AGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQV 138 (231)
Q Consensus 78 ~G~~~~~~~~~~~~~~ad~vIlV~ditSf~~l~~w~~~i~~~~~~~~~~~vv~~k~dl~~~ 138 (231)
..++.|+.++..+++.++++++|+|++.++ ..|.+++.+... .+..++++||.|+...
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~--~s~~~~l~~~l~-~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFN--GSFIPGLPRFAA-DNPILLVGNKADLLPR 113 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSG--GGCCSSHHHHCT-TSCEEEEEECGGGSCT
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCC--CchhhHHHHHhC-CCCEEEEEEChhcCCC
Confidence 357889999999999999999999999555 367777777765 4456689999998653
No 446
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.57 E-value=0.064 Score=46.79 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-|+++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999884
No 447
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.53 E-value=0.065 Score=45.53 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
+++.|++|+|||++++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998754
No 448
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.52 E-value=0.097 Score=42.84 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
..-.+++.|++|+|||+|++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998864
No 449
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.48 E-value=0.068 Score=45.15 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988754
No 450
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.48 E-value=0.057 Score=54.50 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeEEEEEEEEECCe
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGK 68 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~ 68 (231)
||.++|.+|+|||||++-+.. -|+|+.| .+.+||.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G------~I~iDG~ 1141 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER-----FYDTLGG------EIFIDGS 1141 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT-----SSCCSSS------EEEETTE
T ss_pred EEEEECCCCChHHHHHHHHhc-----CccCCCC------EEEECCE
Confidence 789999999999999998763 2567777 4567773
No 451
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.47 E-value=0.069 Score=44.35 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.++++|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999988754
No 452
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.43 E-value=0.1 Score=42.31 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=20.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHH
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~ 42 (231)
...+||++.|.+|||||++...+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 446999999999999999976554
No 453
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.39 E-value=0.098 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.-|+|.|++|+|||+|...+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999998753
No 454
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.38 E-value=0.075 Score=45.98 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy5781 24 VVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~ 42 (231)
.+++|++|+|||||+..+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999998876
No 455
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.38 E-value=0.058 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.+++.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
No 456
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.32 E-value=0.082 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 457
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.31 E-value=0.068 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+++.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.22 E-value=0.076 Score=49.25 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998753
No 459
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.22 E-value=0.075 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-+.++|++|+|||+|++.++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 460
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.20 E-value=0.084 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|+|+|++|+|||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999854
No 461
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.19 E-value=0.074 Score=47.57 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.++++|++|+|||++++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988743
No 462
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.15 E-value=0.077 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
--|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999999864
No 463
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.15 E-value=0.14 Score=51.58 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccccee
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIG 55 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f~~~~~pt~~ 55 (231)
+++++|++|+|||||++-+++- |.|+.|
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~-----~~~~~G 473 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY-----YDVLKG 473 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS-----SCCSEE
T ss_pred EEEEEecCCCcHHHHHHHhccc-----cccccC
Confidence 7899999999999999877643 566666
No 464
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.11 E-value=0.089 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 465
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.09 E-value=0.1 Score=40.93 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 19 DFLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 19 ~~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
...+.|.+.|..|+||||+.+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45688999999999999999988753
No 466
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.09 E-value=0.12 Score=45.56 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 20 FLFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 20 ~~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
...-|+++|.+|+||||+.+++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999998753
No 467
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.07 E-value=0.076 Score=48.16 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q psy5781 23 KVVLIGDCGVGKTCVVHRF 41 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~ 41 (231)
-++++|++|+|||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999999996
No 468
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.07 E-value=0.077 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-+++.|++|+|||+|++.+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 469
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.97 E-value=0.096 Score=41.77 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy5781 23 KVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~ 42 (231)
-+++.|++|+|||+|+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999998876
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.94 E-value=0.079 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+.++|++|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999998864
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.94 E-value=0.067 Score=42.85 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.+++.|++|+|||+++..++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888764
No 472
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.89 E-value=0.088 Score=44.41 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.|++.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 473
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.88 E-value=0.087 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.|++.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998753
No 474
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.86 E-value=0.092 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
..|+|+|++|+|||+|...+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998753
No 475
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.77 E-value=0.11 Score=40.33 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.|.+.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 476
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.66 E-value=0.094 Score=46.11 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy5781 23 KVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~ 42 (231)
-+.|+|++|+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999886
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.66 E-value=0.14 Score=43.60 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.-|+|+|++|+|||+|...+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 35889999999999999999854
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.59 E-value=0.044 Score=44.68 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|++.|++|+|||+|++.+...
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999998753
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.59 E-value=0.12 Score=41.62 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
..|++-|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 480
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.58 E-value=0.11 Score=42.41 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
..|++.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999988653
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.56 E-value=0.12 Score=40.83 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy5781 24 VVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~ 42 (231)
.+++|++|+|||||+..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999998764
No 482
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.54 E-value=0.054 Score=40.10 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 35999999999999998877643
No 483
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.52 E-value=0.17 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
++.++|++|+|||||++.+.+
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999987764
No 484
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.48 E-value=0.1 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.|++.|++|+|||++++.+...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 485
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.47 E-value=0.11 Score=41.46 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.-|++.|.+|+||||+++.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 486
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.44 E-value=0.12 Score=43.68 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 22 FKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 22 ~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-.+++.|++|+|||.|+..+...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999888753
No 487
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.11 Score=48.18 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
+.++|++|+|||||++.+.+-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 689999999999999999864
No 488
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.30 E-value=0.12 Score=50.41 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGDF 46 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~f 46 (231)
.+.++|++|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999996543
No 489
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.25 E-value=0.081 Score=44.59 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999999875
No 490
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.24 E-value=0.089 Score=42.55 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=17.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-.-|++.|.+|+||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 491
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.24 E-value=0.15 Score=44.09 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFR 42 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~ 42 (231)
..+|+++|.+|+||||+.+.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4589999999999999998665
No 492
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.24 E-value=0.11 Score=44.59 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|++.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998854
No 493
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.22 E-value=0.12 Score=40.09 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q psy5781 24 VVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~ 43 (231)
+++.|+.|+|||+++.+.+.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999866653
No 494
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.22 E-value=0.14 Score=39.98 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSGD 45 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~~ 45 (231)
=|++.|++|+|||++...++...
T Consensus 18 gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHcC
Confidence 48999999999999999998653
No 495
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.21 E-value=0.11 Score=44.53 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q psy5781 21 LFKVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 21 ~~kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.-.|++.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999754
No 496
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.18 E-value=0.12 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
-|++.|++|+|||+|++.+.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999853
No 497
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.10 E-value=0.11 Score=46.01 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-+++.|++|+|||+|++.+.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 498
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.06 E-value=0.12 Score=42.85 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~~ 44 (231)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3899999999999999998754
No 499
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.04 E-value=0.11 Score=47.33 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy5781 23 KVVLIGDCGVGKTCVVHRFRS 43 (231)
Q Consensus 23 kIvvlG~~~vGKTSLl~~~~~ 43 (231)
-++++|++|+|||+|++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 500
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.03 E-value=0.14 Score=39.86 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy5781 24 VVLIGDCGVGKTCVVHRFRSG 44 (231)
Q Consensus 24 IvvlG~~~vGKTSLl~~~~~~ 44 (231)
|+|+|.+++|||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
Done!