RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5781
(231 letters)
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 124 bits (312), Expect = 1e-36
Identities = 61/98 (62%), Positives = 71/98 (72%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YDFLFK+VLIG+ GVGKTC+V RF G F G TIGVDF +KTV I+G+KVKLQIWDT
Sbjct: 2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61
Query: 78 AGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
AGQERFR+ITQSYYRSAN +I+ R +
Sbjct: 62 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 99
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 121 bits (305), Expect = 2e-35
Identities = 50/83 (60%), Positives = 67/83 (80%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YD+LFK++LIGD GVGKTCV+ RF F +TIG+DF ++T+ +DGK++KLQIWD
Sbjct: 2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 77 TAGQERFRTITQSYYRSANGVII 99
TAGQERFRTIT +YYR A G+++
Sbjct: 62 TAGQERFRTITTAYYRGAMGIML 84
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 121 bits (303), Expect = 6e-35
Identities = 52/98 (53%), Positives = 67/98 (68%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFK++LIG+ GVGK+C++ RF + +TIGVDF +KTV +DGK VKLQIWDT
Sbjct: 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62
Query: 78 AGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
AGQERFRTIT SYYR ++G+II +
Sbjct: 63 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 100
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 113 bits (283), Expect = 3e-32
Identities = 49/79 (62%), Positives = 62/79 (78%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
+ K++LIGD GVGK+C++ RF F TIG+DF +KTV+I+GKKVKLQIWDTAGQ
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 81 ERFRTITQSYYRSANGVII 99
ERFRTIT +YYR A G+I+
Sbjct: 62 ERFRTITTAYYRGAMGIIL 80
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 108 bits (271), Expect = 2e-30
Identities = 40/98 (40%), Positives = 60/98 (61%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
+D++FK+++IG+ VGKT + R+ F +T+G+DF +KT+ + K++KLQIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 78 AGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
AGQER+RTIT +YYR A G I+
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 99
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 103 bits (256), Expect = 6e-28
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNI----------DG 67
YD+L K++ +GD GVGKT ++R+ F K T+G+DF K V
Sbjct: 2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61
Query: 68 KKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGH 127
KV LQ+WDTAGQERFR++T +++R A G ++ + V + +
Sbjct: 62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLL-----MFDLTSQQSFLNVRNWMSQLQAN 116
Query: 128 AFSTSLAMPQVRPCLFHKF 146
A+ + + +
Sbjct: 117 AYCENPDIVLIGNKADLPD 135
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 100 bits (250), Expect = 2e-27
Identities = 48/99 (48%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 16 DSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKT-GNTIGVDFSMKTVNIDGKKVKLQI 74
D YD FKV+L+GD GVGKTC++ RF+ G F+ T +T+G+DF K +++DG KVKLQ+
Sbjct: 1 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60
Query: 75 WDTAGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWH 113
WDTAGQERFR++T +YYR A+ +++ N
Sbjct: 61 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ 99
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 99.6 bits (247), Expect = 8e-27
Identities = 46/99 (46%), Positives = 65/99 (65%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+YDFLFK ++IG+ G GK+C++H+F F + + +TIGV+F K +N+ GK VKLQIWD
Sbjct: 1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60
Query: 77 TAGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
TAGQERFR++T+SYYR A G ++
Sbjct: 61 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 99
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 98.8 bits (245), Expect = 2e-26
Identities = 47/103 (45%), Positives = 65/103 (63%), Gaps = 2/103 (1%)
Query: 15 DDSYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQI 74
D+ K+++IG+ GVGK+ ++ RF F + TIGVDF +KT+++DG K KL I
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60
Query: 75 WDTAGQERFRTITQSYYRSANGVI--IEVTSVEYCYQRNWHKQ 115
WDTAGQERFRT+T SYYR A GVI +VT + + +
Sbjct: 61 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN 103
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 98.4 bits (244), Expect = 2e-26
Identities = 46/98 (46%), Positives = 68/98 (69%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
YD+LFKVVLIGD GVGK+ ++ RF +F ++ +TIGV+F+ +++ +DGK +K QIWDT
Sbjct: 1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60
Query: 78 AGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
AGQER+R IT +YYR A G ++ ++ N +
Sbjct: 61 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERW 98
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 97.6 bits (242), Expect = 4e-26
Identities = 42/98 (42%), Positives = 63/98 (64%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
Y ++FK ++IGD GVGK+C++H+F F+ +TIGV+F + + + G+K+KLQIWDT
Sbjct: 1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60
Query: 78 AGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
AGQERFR +T+SYYR A G ++ +
Sbjct: 61 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 98
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 80.3 bits (197), Expect = 2e-19
Identities = 45/96 (46%), Positives = 61/96 (63%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
+LFK ++IGD GVGK+C++ +F F TIGV+F + VNIDGK++KLQIWDTAG
Sbjct: 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61
Query: 80 QERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
QE FR+IT+SYYR A G ++ +
Sbjct: 62 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW 97
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 79.6 bits (195), Expect = 3e-19
Identities = 38/126 (30%), Positives = 66/126 (52%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
LFKV+L+GD GVGK+ +++R+ + F + +TIGV+F K + +DG V +QIWDTAGQ
Sbjct: 6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 65
Query: 81 ERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140
ERFR++ +YR ++ ++ + + +N S + +
Sbjct: 66 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 125
Query: 141 CLFHKF 146
+ +
Sbjct: 126 DISERQ 131
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 78.1 bits (191), Expect = 9e-19
Identities = 37/94 (39%), Positives = 50/94 (53%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+G+ VGK+ +V RF G F E +TIG F +TV +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
R+ ++ YYR A I+
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 76.2 bits (186), Expect = 5e-18
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+V +G+ VGKT ++ RF F TIG+DF KT+ ++ + ++LQ+WDTAGQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 82 RFRTITQSYYRSANGVII 99
RFR++ SY R + ++
Sbjct: 61 RFRSLIPSYIRDSAAAVV 78
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 72.1 bits (176), Expect = 5e-16
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 8/126 (6%)
Query: 18 YDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
Y +++L+G GK+ +V + R V T G+ KV ++D
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIF----ETKFQVDKVNFHMFDV 54
Query: 78 AGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQ 137
GQ R + +I V S Y Q L + + + +
Sbjct: 55 GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114
Query: 138 VRPCLF 143
+ LF
Sbjct: 115 ISVILF 120
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 70.1 bits (170), Expect = 8e-16
Identities = 41/96 (42%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
+FK+++IGD VGKTC+ +RF +G F ++T TIGVDF + V+IDG+++K+Q+WDTAGQ
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61
Query: 81 ERF-RTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
ERF +++ Q YYR+ + V+ +
Sbjct: 62 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW 97
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 70.0 bits (170), Expect = 1e-15
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 20 FLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
+ FKVVL+G+ VGKT +V R+ F +K T+G F K +NI GK+V L IWDTAG
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61
Query: 80 QERFRTITQSYYRSANGVII 99
QERF + YYR +NG I+
Sbjct: 62 QERFHALGPIYYRDSNGAIL 81
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 70.5 bits (171), Expect = 1e-15
Identities = 34/91 (37%), Positives = 56/91 (61%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++GD GVGKT +++++ + F + TIG DF K V +D + V +QIWDTAGQ
Sbjct: 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 81 ERFRTITQSYYRSANGVIIEVTSVEYCYQRN 111
ERF+++ ++YR A+ ++ +
Sbjct: 62 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 92
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 68.9 bits (167), Expect = 3e-15
Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++++G GKT ++++ + G+ V T ++ K + +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 83 FRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
R + + Y+++ G+I V S + ++
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREE 89
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 68.4 bits (166), Expect = 4e-15
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+KVV++G GVGK+ + +F +G F+EK TI DF K + +D L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
+F ++ Y ++ G I+ + V ++
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPM 96
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 68.2 bits (165), Expect = 6e-15
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKV-KLQIWDTAG 79
+ KV+++GD GVGKT ++HR+ + + ++ TIG DF K V +DG KV +Q+WDTAG
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 80 QERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
QERF+++ ++YR A+ ++ N
Sbjct: 62 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW 97
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 68.1 bits (165), Expect = 7e-15
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 17 SYDFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
+ K V++GD VGKTC++ + + F E+ T+ D +V + GK+ L ++D
Sbjct: 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYD 63
Query: 77 TAGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKY 123
TAGQE + + Y + +I + V +N ++ V +Y
Sbjct: 64 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY 110
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 67.0 bits (162), Expect = 2e-14
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ D TV I G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
+ + Y + ++ + V N ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 66.5 bits (161), Expect = 3e-14
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT +++R + G+ V TIG + + K +KL +WD GQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV----ETLSYKNLKLNVWDLGGQT 72
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYK 124
R + YY VI V S + K+ + + +
Sbjct: 73 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 115
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 65.8 bits (159), Expect = 4e-14
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+V++GD GKTC++ F E T+ + + + +DGK+V+L +WDTAG E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKY 123
+ + Y + +++ + N ++ +
Sbjct: 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 103
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 65.1 bits (157), Expect = 7e-14
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+VL+G+ VGK+ +V RF S DF E TIG F + V I+ VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 83 FRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCL 142
F ++ YYR+A ++ V V + V + +
Sbjct: 65 FASLAPMYYRNAQAALV-VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123
Query: 143 FHKFGHASSSAMPFPQVWPCLKF 165
+ A + L F
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFF 146
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 63.9 bits (154), Expect = 2e-13
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + +F G FVEK TI D K V +D ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWH 113
+F + Y ++ G + + +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQ 94
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 63.4 bits (153), Expect = 3e-13
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++++ + G V V F+++TV K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTY--KNVKFNVWDVGGQD 67
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPC 141
+ R + + YY G+I V + ++ + + + A A Q P
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 63.1 bits (152), Expect = 4e-13
Identities = 35/94 (37%), Positives = 43/94 (45%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV L+GD GVGK+ ++ RF F TIG F KTV + K IWDTAG E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
RFR + YYR + II +
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 98
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 62.0 bits (149), Expect = 8e-13
Identities = 31/89 (34%), Positives = 54/89 (60%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++G+ VGK+ ++ R+ G F + TIGVDF + + ++ + V+L +WDTAGQE
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 83 FRTITQSYYRSANGVIIEVTSVEYCYQRN 111
F IT++YYR A ++ ++ +
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFEA 92
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 62.2 bits (150), Expect = 1e-12
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 7/123 (5%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L K++L+G GK+ + + R + T G+ + + K V ++ D GQ
Sbjct: 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI----HEYDFEIKNVPFKMVDVGGQ 54
Query: 81 ERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRP 140
R + S ++ V+S E+ +Q L + + V
Sbjct: 55 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114
Query: 141 CLF 143
LF
Sbjct: 115 ILF 117
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 61.2 bits (147), Expect = 2e-12
Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K++ +G GKT ++H ++ T+ + + + +K +D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 83 FRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
R + + Y+ NG++ V + + +
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 89
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 61.9 bits (149), Expect = 2e-12
Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 6/122 (4%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K++L+G GK+ + + R T G+ D + V ++ D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGSGVP--TTGIIE----YPFDLQSVIFRMVDVGGQR 56
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPC 141
R + + ++ V EY + + T
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116
Query: 142 LF 143
LF
Sbjct: 117 LF 118
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 61.2 bits (147), Expect = 2e-12
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++GD GVGK+ + +F FV TI D +K ID + L + DTAGQE
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRN 111
F + + Y R+ +G +I + + +
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTDKASFEH 93
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 60.7 bits (146), Expect = 3e-12
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L KV+++G GVGK+ + +F +FVE T D K V +DG++V++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 81 ERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHK 114
E + I +Y+RS G + + E
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD 96
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 60.1 bits (144), Expect = 5e-12
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G GKT ++ +F D +TI ++ + KL IWD GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
R+ ++Y+ S +G+I V S + ++ ++
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 91
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 60.1 bits (144), Expect = 5e-12
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
K+V++G GVGK+ + +F FV + D K ++DG +L I DTAGQ
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDY-DPTIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 81 ERFRTITQSYYRSANGVIIEVTSVEYCYQRNWH 113
E F + + Y R+ +G ++ +
Sbjct: 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVG 97
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 60.1 bits (144), Expect = 6e-12
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++V++G GVGK+ + +F FV TI D K ID + +L I DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHK 114
F + + Y R+ G ++ + + +K
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYK 97
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 60.0 bits (144), Expect = 7e-12
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K V++GD VGKTC++ + + F + T+ ++S +DGK V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVNLGLWDTAGQE 64
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKY 123
+ + Y + +I + V N + +
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH 106
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 57.7 bits (138), Expect = 4e-11
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+K+V++G GVGK+ + + FV++ TI + + V + L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWH 113
+ + Y R+ G + + H
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 57.4 bits (137), Expect = 6e-11
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
K+V++GD GKT ++H F F E T+ + + ID ++++L +WDT+G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 83 FRTITQSYYRSANGVIIEVTSVEYCYQRNWH 113
+ + Y ++ V+I +
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVL 93
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 56.9 bits (136), Expect = 1e-10
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
V+ +G C GKT + R +G + + T +I ++ VN + I +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 83 FRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHA 128
+ + SA V+ V S +QR A L+ A
Sbjct: 61 RFQLLDRFKSSARAVVFVVDS--AAFQREVKDVAEFLYQVLIDSMA 104
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 56.2 bits (134), Expect = 1e-10
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
FK+VL+GD G GKT V R +G+F +K T+GV+ + + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRN 111
+F + YY A II +N
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 93
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 56.1 bits (134), Expect = 1e-10
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 1/106 (0%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
++V + G GVGK+ +V RF G F E T+ + LQI DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGH 127
+F + + + I+ + + +
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE 107
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 55.9 bits (133), Expect = 2e-10
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+ ++G VGK+ + +F G FV+ TI + K + ++G++ LQ+ DTAGQ+
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
+ Q+Y NG I+ +
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVI 97
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 53.5 bits (127), Expect = 1e-09
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+ + G GVGK+ +V RF + F+ + T+ ID + V ++I DT +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDT-AGQ 60
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
+ + R G ++ +
Sbjct: 61 EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPL 94
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 53.1 bits (126), Expect = 2e-09
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV+++G GKT ++++F + V I + +WD GQE
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVH-----TSPTIGSNVEEIVINNTRFLMWDIGGQE 70
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
R+ +YY + VI+ V S + ++
Sbjct: 71 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 104
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 53.0 bits (126), Expect = 2e-09
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K++L+G GK+ +V + + G+ + K + +++D GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQR 53
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYK 124
R + +I V +Y ++ + + K
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK 96
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 52.0 bits (123), Expect = 4e-09
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++++G G GKT +++R + G+ V T + K +K Q+WD G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGH 127
R + YY + + VI V S + + V + ++ +
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK 106
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 51.1 bits (121), Expect = 1e-08
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+++L+G GKT ++ + S D T T G ++ + KL +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG----FNIKSVQSQGFKLNVWDIGGQR 71
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
+ R +SY+ + + +I + S + ++
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQE 105
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 50.4 bits (119), Expect = 2e-08
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
++ ++GD GK+ ++HRF +G + + K + +DG+ + I + A
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEA 60
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 49.0 bits (115), Expect = 5e-08
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDF-VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDT 77
+ ++VVLIG+ GVGK+ + + F ++ +G D +T+ +DG+ + + D
Sbjct: 1 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60
Query: 78 AGQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
+ + + V S+ +
Sbjct: 61 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASE 98
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 48.2 bits (113), Expect = 1e-07
Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
+KV+L+G GVGK+ + F + + +++ +DG++ L ++D Q+
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
R + + +I + + +
Sbjct: 60 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL 93
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 47.4 bits (111), Expect = 2e-07
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
++ L+G GKT V+ SG F E T+G + I V +++WD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 58
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKY 123
RFR++ + Y R + ++ V + + + L DK
Sbjct: 59 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 100
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 47.7 bits (112), Expect = 2e-07
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
+++ G GKT ++ + T+ + + DG V + D G +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFPGHVKL 59
Query: 84 RTITQSYY 91
R Y
Sbjct: 60 RYKLSDYL 67
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 46.2 bits (108), Expect = 5e-07
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
K+V +G GKT ++H + + + + + +D G
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTIAGMTFTTFDLGGHI 68
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHK 114
+ R + ++Y + NG++ V ++ +
Sbjct: 69 QARRVWKNYLPAINGIVFLVDCADHERLLESKE 101
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 36.6 bits (83), Expect = 0.001
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 1/108 (0%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KVV+ G GK+ +++ +G + G + +I + L I DTAG
Sbjct: 2 MKVVIAGRPNAGKSSLLNAL-AGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60
Query: 82 RFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAF 129
+ IE AV + + A
Sbjct: 61 EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR 108
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 35.1 bits (80), Expect = 0.004
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVN--IDGKKVKLQIWDTAG 79
V + G+ G GK+ ++ R E+ GV + + WD G
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116
Query: 80 QERFRTITQSYYR 92
+Y
Sbjct: 117 IGSTNFPPDTYLE 129
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 34.3 bits (78), Expect = 0.010
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 24 VVLIGDCGVGKTCVVH----RFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
VLIG+ GVGKT +V R GD E V M G + +
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM------GSLLAGAKYRGEF 99
Query: 80 QERFRTITQSYYRSANGVII 99
+ER + + Q +S VI+
Sbjct: 100 EERLKAVIQEVVQSQGEVIL 119
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 32.3 bits (72), Expect = 0.023
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
++V++G VGK+ +++R + + G + + I + + +I DTAG
Sbjct: 2 RMVIVGKPNVGKSTLLNRL-LNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG 57
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 32.0 bits (71), Expect = 0.037
Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 12/153 (7%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQE 81
KV ++G VGK+ + + G + K DTAG
Sbjct: 9 IKVAIVGRPNVGKSTLFNAI-LNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67
Query: 82 RFRTITQSYYRSANG-----------VIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFS 130
R + + V++ V R + A + + +
Sbjct: 68 RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127
Query: 131 TSLAMPQVRPCLFHKFGHASSSAMPFPQVWPCL 163
+ R + +F + F P +
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 160
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 31.7 bits (70), Expect = 0.052
Identities = 13/109 (11%), Positives = 35/109 (32%)
Query: 19 DFLFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTA 78
D +V G GK+ ++ + + +T T G + + K + +
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73
Query: 79 GQERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGH 127
E + + + R+ + + S++ + + D+
Sbjct: 74 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEW 122
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 30.6 bits (68), Expect = 0.12
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 13/113 (11%)
Query: 22 FKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG-- 79
++++G GVGK+ V+ G+ V V+ L I DT G
Sbjct: 33 LTILVMGKGGVGKSSTVNSI-IGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 91
Query: 80 ---------QERFRTITQSYYRSANGVIIEVTSVEYCYQ-RNWHKQAVTLFDK 122
++ + + + + K F K
Sbjct: 92 EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK 144
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 28.5 bits (62), Expect = 0.44
Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 11/139 (7%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
++ G VGK+ +++R + G GV + + +I D G
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKV--RRGKRPGVTRKIIEIEWKNH----KIIDMPGFGFM 56
Query: 84 RTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLF 143
+ + I+ V + + L K P
Sbjct: 57 MGLPKEVQE-----RIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDV 111
Query: 144 HKFGHASSSAMPFPQVWPC 162
+ +P
Sbjct: 112 EFYQFLRELDIPTIVAVNK 130
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.2 bits (61), Expect = 0.69
Identities = 12/95 (12%), Positives = 36/95 (37%)
Query: 21 LFKVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQ 80
L ++ L G VGK+ ++ + + +T + G ++ I+ + + +
Sbjct: 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82
Query: 81 ERFRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQ 115
+ ++ +++ R I ++ Q +
Sbjct: 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRH 117
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 28.0 bits (61), Expect = 0.71
Identities = 6/94 (6%), Positives = 22/94 (23%), Gaps = 7/94 (7%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQER 82
+++ G G GKT + + + + + + + +
Sbjct: 7 NILITGTPGTGKTSM------AEMIAAELDGFQHL-EVGKLVKENHFYTEYDTELDTHII 59
Query: 83 FRTITQSYYRSANGVIIEVTSVEYCYQRNWHKQA 116
+++ + Y +
Sbjct: 60 EEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPE 93
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 27.4 bits (59), Expect = 1.0
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWD 76
V ++G VGK+ +++ G V + + ++ D
Sbjct: 8 VAIVGKPNVGKSTLLNNLL-GVKVAPISPRPQTTRKRLRGILTEGRRQIVFVD 59
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.4 bits (59), Expect = 1.1
Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 6/149 (4%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERF 83
V+++G VGK+ + ++ + GV ++ ++ DT G
Sbjct: 3 VLIVGRPNVGKSTLFNKL-VKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61
Query: 84 RTITQSYYRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKYKFGHAFSTSLAMPQVRPCLF 143
S + + + + + + + +
Sbjct: 62 PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVA 116
Query: 144 HKFGHASSSAMPFPQVWPCLKFGHAFSTS 172
+K + L FG S
Sbjct: 117 NKAENLREFEREVKPELYSLGFGEPIPVS 145
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 26.0 bits (57), Expect = 1.4
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 41 FRSGDFVEKTGNTIGVDFSMKTVNID----GKKVKLQIWDTAGQERFRTIT 87
G V K + + G V L D +G R +T
Sbjct: 34 VPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDPSGGSRTVQVT 84
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.9 bits (58), Expect = 1.8
Identities = 18/151 (11%), Positives = 38/151 (25%), Gaps = 20/151 (13%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTI----GVDFSMKTVNIDGKK-VKLQ----- 73
VV +G G GKT + F + GV +ID ++ V ++
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 74 --------IWDTAGQERFRTITQSY--YRSANGVIIEVTSVEYCYQRNWHKQAVTLFDKY 123
+ + + + + +H+ V L +
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 124 KFGHAFSTSLAMPQVRPCLFHKFGHASSSAM 154
+ S +P + +
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLID 153
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 26.4 bits (57), Expect = 2.3
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 20 FLFKVVLIGDCGVGKTCVVHR---------FRSGDFVEKTGNTIGVDFSMKTVNIDGKKV 70
L ++L G GVGKT + GD + G D +D +V
Sbjct: 3 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRV 62
Query: 71 KLQIWD 76
++ +
Sbjct: 63 VDELDN 68
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 26.1 bits (57), Expect = 3.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 24 VVLIGDCGVGKTCVVHRF 41
+L+G+ GVGKT +
Sbjct: 42 PLLVGESGVGKTAIAEGL 59
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 25.4 bits (54), Expect = 5.0
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDF--VEKTGNTIGVDFSMKTVNIDGKKVKLQIWDTAG 79
V L+G GK+ ++ T+ + + V+ + + + D G
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE---RFTLADIPG 58
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 25.3 bits (55), Expect = 5.2
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 51 GNTIGVDFSMKTVNIDGKKVKLQIWDTAGQERFRTITQSYYRSANGVIIEVTSVE 105
G TI V + K D G + + +G I+ V++ +
Sbjct: 52 GITINT----AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD 102
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 24.9 bits (53), Expect = 8.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 24 VVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKT 62
VVL G G GK+ ++ + ++ + G S T
Sbjct: 3 VVLSGPSGAGKSTLLKKLF-----QEHSSIFGFSVSHTT 36
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 96
Score = 23.8 bits (52), Expect = 8.7
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 72 LQIWDTAGQERFRTI------TQSYYRSANGVIIEVTSVE 105
LQI A +E F+T + +Y + ++ ++ E
Sbjct: 11 LQILLGAKKEGFKTRLYVSPKRRPFYS-SLPIVDDLVVAE 49
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia
coli [TaxId: 562]}
Length = 168
Score = 24.4 bits (53), Expect = 9.0
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 23 KVVLIGDCGVGKTCVVHRFRSGDFVEKTGNTIGVDFSMKTVNIDGKKVKLQIW 75
V+L D + E+ + + + VN K+V++ +
Sbjct: 30 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCISVVNALSKRVEVNVR 82
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 24.6 bits (52), Expect = 9.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 23 KVVLIGDCGVGKTCV 37
K VL+G G GK+ +
Sbjct: 3 KAVLVGLPGSGKSTI 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.135 0.436
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 861,458
Number of extensions: 37630
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 83
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.1 bits)