BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5785
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 252
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/126 (75%), Positives = 115/126 (91%), Gaps = 2/126 (1%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID N DKVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 88 RIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 147
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
+R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 148 EREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQ 207
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 208 DPFSLY 213
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 110/204 (53%), Gaps = 35/204 (17%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKN-----------------------IRSFQLSA 83
+ K FAIYRW+PDK +KP MQ Y+ N RS +
Sbjct: 10 RIKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGI 69
Query: 84 AASSAVPAEKPAKYKTFAIYRWNPDKPDE---KPTMQEYKVDLNNQLNFSA--------- 131
S A+ N DK + P M K + + NF A
Sbjct: 70 CGSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYL 129
Query: 132 RSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 191
+ + QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYR
Sbjct: 130 KKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYR 189
Query: 192 WIIDSRDEKTADRLNQLKDPFSVY 215
W+IDSRD+ T +RL +L+DPFS+Y
Sbjct: 190 WMIDSRDDFTEERLAKLQDPFSLY 213
>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3SFD|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 252
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 95/126 (75%), Positives = 115/126 (91%), Gaps = 2/126 (1%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID N DKVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 88 RIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 147
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
+R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 148 EREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQ 207
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 208 DPFSLY 213
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 110/204 (53%), Gaps = 35/204 (17%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKN-----------------------IRSFQLSA 83
+ K FAIYRW+PDK +KP MQ Y+ N RS +
Sbjct: 10 RIKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGI 69
Query: 84 AASSAVPAEKPAKYKTFAIYRWNPDKPDE---KPTMQEYKVDLNNQLNFSA--------- 131
S A+ N DK + P M K + + NF A
Sbjct: 70 CGSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYL 129
Query: 132 RSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 191
+ + QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYR
Sbjct: 130 KKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYR 189
Query: 192 WIIDSRDEKTADRLNQLKDPFSVY 215
W+IDSRD+ T +RL +L+DPFS+Y
Sbjct: 190 WMIDSRDDFTEERLAKLQDPFSLY 213
>pdb|1YQ3|B Chain B, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|B Chain B, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|B Chain B, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|O Chain O, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|B Chain B, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|O Chain O, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|B Chain B, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|B Chain B, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|O Chain O, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 252
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 114/131 (87%), Gaps = 2/131 (1%)
Query: 212 FSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQY 269
+ KID + K +KIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L++ D+ G QY
Sbjct: 83 LACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQY 142
Query: 270 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 329
LQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +R
Sbjct: 143 LQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEER 202
Query: 330 LNQLKDPFSVY 340
L QL+DPFS+Y
Sbjct: 203 LAQLQDPFSLY 213
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 120/228 (52%), Gaps = 59/228 (25%)
Query: 31 QLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN--------------- 75
Q +AAA+S + K F+IYRW+PDKP +KP MQ Y+ N
Sbjct: 2 QTAAAATSRI--------KKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKN 53
Query: 76 ----------------IRSFQLSAAASSAVPAEK---PAKYKTFAIYRWNPDKPDEKPTM 116
S ++ A + + K P KT IY P M
Sbjct: 54 ELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPL--------PHM 105
Query: 117 QEYKVDLNNQLNFSA---------RSSHATAISNAQYLQSLDDRKKLDGLYECILCACCS 167
K + + NF A + + QYLQS++DR+KLDGLYECILCACCS
Sbjct: 106 YVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCS 165
Query: 168 TSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
TSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL QL+DPFS+Y
Sbjct: 166 TSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLY 213
>pdb|3VR8|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 282
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 107/134 (79%), Gaps = 2/134 (1%)
Query: 209 KDPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGN 266
++ + ID N K +KIYPLPHM+V+KDLVPDMN FYAQY SIQPWLQ+ K N+G
Sbjct: 104 ENTLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGE 163
Query: 267 AQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 326
Q QS+ +++KLDGLYECILCACCS SCPSYWWN +KYLGPAVLMQAYRWIIDSRD+
Sbjct: 164 KQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSA 223
Query: 327 ADRLNQLKDPFSVY 340
A+RL +++D FS +
Sbjct: 224 AERLARMQDGFSAF 237
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 64/77 (83%)
Query: 139 ISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRD 198
+ Q QS+ +++KLDGLYECILCACCS SCPSYWWN +KYLGPAVLMQAYRWIIDSRD
Sbjct: 161 LGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRD 220
Query: 199 EKTADRLNQLKDPFSVY 215
+ A+RL +++D FS +
Sbjct: 221 DSAAERLARMQDGFSAF 237
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 96 KYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
+ KTF IYR+NP++P KP +Q++ VDL+
Sbjct: 34 RIKTFEIYRFNPEEPGAKPKLQKFDVDLD 62
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEY 70
+ KTF IYR+NP++P KP +Q++
Sbjct: 34 RIKTFEIYRFNPEEPGAKPKLQKF 57
>pdb|2WP9|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
Length = 238
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 128/241 (53%), Gaps = 41/241 (17%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYE 159
F+IYR+NPD D+ P MQ+Y ++ + + + I + SL R+
Sbjct: 5 FSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDA---LIQLKEKDPSLSFRR------- 53
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKID 219
+C C S N G A + + S ++
Sbjct: 54 ----SCREGVCGSDGLNMNGKNGLACI--------------------------TPISALN 83
Query: 220 ANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKL 279
K I PLP + V++DLV DM FYAQY+ I+P+L + +N ++LQ + R+KL
Sbjct: 84 QPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKL 143
Query: 280 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSV 339
DGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++IDSRD +T RL+ L D FSV
Sbjct: 144 DGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSV 203
Query: 340 Y 340
+
Sbjct: 204 F 204
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 102/202 (50%), Gaps = 39/202 (19%)
Query: 51 FAIYRWNPDKPDEKPTMQEYKT-AKNIRSFQLSAAASSAVPAEKPAKYKTF--------- 100
F+IYR+NPD D+ P MQ+Y A R L A + ++
Sbjct: 5 FSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSD 63
Query: 101 --------AIYRWNP----DKPDEK---------PTMQEYKVDLNNQLNFSARSSHATAI 139
+ P ++P +K P +++ VD+ Q +
Sbjct: 64 GLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDM-GQFYAQYEKIKPYLL 122
Query: 140 SNAQ------YLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWI 193
+N Q +LQ + R+KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++
Sbjct: 123 NNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFL 182
Query: 194 IDSRDEKTADRLNQLKDPFSVY 215
IDSRD +T RL+ L D FSV+
Sbjct: 183 IDSRDTETDSRLDGLSDAFSVF 204
>pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WS3|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 238
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 128/241 (53%), Gaps = 41/241 (17%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYE 159
F+IYR+NPD D+ P MQ+Y ++ + + + I + SL R+
Sbjct: 5 FSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDA---LIQLKEKDPSLSFRR------- 53
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKID 219
+C C S N G A + + S ++
Sbjct: 54 ----SCREGVCGSDGLNMNGKNGLACI--------------------------TPISALN 83
Query: 220 ANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKL 279
K I PLP + V++DLV DM FYAQY+ I+P+L + +N ++LQ + R+KL
Sbjct: 84 QPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKL 143
Query: 280 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSV 339
DGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++IDSRD +T RL+ L D FSV
Sbjct: 144 DGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSV 203
Query: 340 Y 340
+
Sbjct: 204 F 204
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 102/202 (50%), Gaps = 39/202 (19%)
Query: 51 FAIYRWNPDKPDEKPTMQEYKT-AKNIRSFQLSAAASSAVPAEKPAKYKTF--------- 100
F+IYR+NPD D+ P MQ+Y A R L A + ++
Sbjct: 5 FSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSD 63
Query: 101 --------AIYRWNP----DKPDEK---------PTMQEYKVDLNNQLNFSARSSHATAI 139
+ P ++P +K P +++ VD+ Q +
Sbjct: 64 GLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDM-GQFYAQYEKIKPYLL 122
Query: 140 SNAQ------YLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWI 193
+N Q +LQ + R+KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++
Sbjct: 123 NNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFL 182
Query: 194 IDSRDEKTADRLNQLKDPFSVY 215
IDSRD +T RL+ L D FSV+
Sbjct: 183 IDSRDTETDSRLDGLSDAFSVF 204
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|B Chain B, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|N Chain N, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|2B76|B Chain B, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|N Chain N, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|3CIR|B Chain B, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|N Chain N, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3P4R|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|B Chain B, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|N Chain N, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 243
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 89 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 148
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL
Sbjct: 149 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQL 195
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYS 216
CI C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+S
Sbjct: 148 CINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWS 203
>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 241
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 219 DANDKVSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWLQRDKEN-IGNAQYLQSLDDR 276
D D V + PLP ++KDL D N F + ++ W+ KE+ I + +
Sbjct: 83 DFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVA 142
Query: 277 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 326
+++ L CI C CC +C + E ++G A L + R++ID DE+T
Sbjct: 143 QEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERT 191
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 157 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL----KDPF 212
L CI C CC +C + E ++G A L + R++ID DE+T + +L F
Sbjct: 148 LDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVF 206
Query: 213 SVYSKIDANDKVSKIYPL 230
+ + +D K PL
Sbjct: 207 GCMTLLACHDVCPKNLPL 224
>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
Length = 239
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 219 DANDKVSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWLQRDKEN-IGNAQYLQSLDDR 276
D D V + PLP ++KDL D N F + ++ W+ KE+ I + +
Sbjct: 83 DFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVA 142
Query: 277 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 326
+++ L CI C CC +C + E ++G A L + R++ID DE+T
Sbjct: 143 QEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERT 191
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 157 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL----KDPF 212
L CI C CC +C + E ++G A L + R++ID DE+T + +L F
Sbjct: 148 LDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVF 206
Query: 213 SVYSKIDANDKVSKIYPL 230
+ + +D K PL
Sbjct: 207 GCMTLLACHDVCPKNLPL 224
>pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And
Dna Stimulated Activation Of Smc Atpases.
pdb|1XEX|A Chain A, Structural Biochemistry Of Atp-Driven Dimerization And
Dna Stimulated Activation Of Smc Atpases
Length = 182
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 6 IGETILLKMSKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK 60
IG+ IL + GL+AK +R+ ++S + E PAKY AIY N D+
Sbjct: 42 IGDAILFVLG-----GLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDR 91
>pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|C Chain C, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 182
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 6 IGETILLKMSKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK 60
IG+ IL + GL+AK R+ ++S + E PAKY AIY N D+
Sbjct: 42 IGDAILFVLG-----GLSAKAXRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDR 91
>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
pdb|4I99|B Chain B, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
Length = 354
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 6 IGETILLKMSKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK 60
IG+ IL + GL+AK R+ ++S + E PAKY AIY N D+
Sbjct: 42 IGDAILFVLG-----GLSAKAXRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDR 91
>pdb|3BEO|A Chain A, A Structural Basis For The Allosteric Regulation Of Non-
Hydrolyzing Udp-Glcnac 2-Epimerases
pdb|3BEO|B Chain B, A Structural Basis For The Allosteric Regulation Of Non-
Hydrolyzing Udp-Glcnac 2-Epimerases
Length = 375
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 201 TADRLNQLKDPF-----SVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQP 255
TA R L +P ++ +D ++ V +YP+ VV++ D+ Y + I+P
Sbjct: 211 TAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHMNPVVRETANDILGDYGRIHLIEP 270
Query: 256 WLQRDKENIGNAQYLQSLD 274
D N+ YL D
Sbjct: 271 LDVIDFHNVAARSYLMLTD 289
>pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|8 Chain 8, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|9 Chain 9, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|O Chain O, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 182
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 155 DGLYECILCACCSTSCPSY 173
+GL +CI C+ C+ +CP+Y
Sbjct: 48 NGLEKCIGCSLCAAACPAY 66
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 280 DGLYECILCACCSTSCPSY 298
+GL +CI C+ C+ +CP+Y
Sbjct: 48 NGLEKCIGCSLCAAACPAY 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,073,876
Number of Sequences: 62578
Number of extensions: 407895
Number of successful extensions: 1123
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 52
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)