BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5785
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0BM36|DHSB_XENTR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Xenopus tropicalis GN=sdhb PE=2 SV=1
Length = 284
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 151/247 (61%), Gaps = 45/247 (18%)
Query: 96 KYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLD 155
+ K FAIYRW+PDKP +KP MQ Y+VDLN S I N R +
Sbjct: 42 RIKKFAIYRWDPDKPGDKPRMQTYEVDLNE--CGSMVLDALIKIKNEMDPTLTFRRSCRE 99
Query: 156 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
G+ C C+ + NG L V
Sbjct: 100 GI-----CGSCAMN-----INGGNTLACTV------------------------------ 119
Query: 216 SKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSL 273
+ID N KVSKIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS+
Sbjct: 120 -RIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKEQYLQSI 178
Query: 274 DDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
+DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ T +RL +L
Sbjct: 179 EDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDYTEERLAKL 238
Query: 334 KDPFSVY 340
+DPFS+Y
Sbjct: 239 QDPFSLY 245
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 108/204 (52%), Gaps = 35/204 (17%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKN-----------------------IRSFQLSA 83
+ K FAIYRW+PDKP +KP MQ Y+ N RS +
Sbjct: 42 RIKKFAIYRWDPDKPGDKPRMQTYEVDLNECGSMVLDALIKIKNEMDPTLTFRRSCREGI 101
Query: 84 AASSAVPAEKPAKYKTFAIYRWNPDKPDE---KPTMQEYKVDLNNQLNFSA--------- 131
S A+ N K + P M K + + NF A
Sbjct: 102 CGSCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYL 161
Query: 132 RSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 191
+ + QYLQS++DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYR
Sbjct: 162 KKKDESQEGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYR 221
Query: 192 WIIDSRDEKTADRLNQLKDPFSVY 215
W+IDSRD+ T +RL +L+DPFS+Y
Sbjct: 222 WMIDSRDDYTEERLAKLQDPFSLY 245
>sp|P21914|DHSB_DROME Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Drosophila melanogaster GN=SdhB PE=2
SV=2
Length = 297
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/135 (76%), Positives = 114/135 (84%), Gaps = 4/135 (2%)
Query: 210 DPFSVYSKIDANDKVS-KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE---NIG 265
+ + SKID N S K+YPLPHMYVV+DLVPDMNNFY QY++IQPWLQR E G
Sbjct: 116 NTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKG 175
Query: 266 NAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEK 325
AQYLQS++DR KLDGLYECILCACCSTSCPSYWWN EKYLGPAVLMQAYRWIIDSRDE
Sbjct: 176 KAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDEN 235
Query: 326 TADRLNQLKDPFSVY 340
+A+RLN+LKDPFSVY
Sbjct: 236 SAERLNKLKDPFSVY 250
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 122/245 (49%), Gaps = 50/245 (20%)
Query: 17 FSAIG-LTAKNIRSFQLSAAASSAVPAEKPAK--------YKTFAIYRWNPDKPDEKPTM 67
S +G L A+N Q+ A ++ E+ A+ K F IYRWNPD EKP M
Sbjct: 10 LSRVGSLVARN----QMRAISNGTAQLEQQAQPKEAQEPQIKKFEIYRWNPDNAGEKPYM 65
Query: 68 QEYK-----------------------TAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYR 104
Q Y+ T RS + S A+ +
Sbjct: 66 QTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGTNTLACISKID 125
Query: 105 WNPDKP-------------DEKPTMQEYKVDLNNQLNFSARSSHATAI-SNAQYLQSLDD 150
N K D P M + N + R + A AQYLQS++D
Sbjct: 126 INTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVED 185
Query: 151 RKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 210
R KLDGLYECILCACCSTSCPSYWWN EKYLGPAVLMQAYRWIIDSRDE +A+RLN+LKD
Sbjct: 186 RSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKD 245
Query: 211 PFSVY 215
PFSVY
Sbjct: 246 PFSVY 250
>sp|Q75CI4|DHSB_ASHGO Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SDH2 PE=3 SV=1
Length = 261
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/266 (47%), Positives = 149/266 (56%), Gaps = 50/266 (18%)
Query: 76 IRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSH 135
IR AA SA +YK+F IYRWNPD P EKP MQEYKVDLN +
Sbjct: 13 IRGLATQAAEVSAT------RYKSFKIYRWNPDTPAEKPRMQEYKVDLNKCGPMVLDA-- 64
Query: 136 ATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIID 195
I N Q R +G +C C+ + I
Sbjct: 65 LIKIKNEQDPTLTFRRSCREG-----ICGSCAMN------------------------IG 95
Query: 196 SRDEKTADRLNQLKDPFSVYSKID-ANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQ 254
R+ + KID A +K KIYPLPHMYVVKDLVPD+ NFY QYKSIQ
Sbjct: 96 GRNT------------LACLCKIDQAENKDVKIYPLPHMYVVKDLVPDLTNFYKQYKSIQ 143
Query: 255 PWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQA 314
P+LQ+ + ++LQS+ DRKKLDGLYECILCACCST+CPSYWWN E+YLGPAVLMQA
Sbjct: 144 PYLQKASKPADGREHLQSIADRKKLDGLYECILCACCSTACPSYWWNNEQYLGPAVLMQA 203
Query: 315 YRWIIDSRDEKTADRLNQLKDPFSVY 340
YRW++DSRD A R QL++ SVY
Sbjct: 204 YRWMVDSRDGAGAGRREQLQNAMSVY 229
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 15 SKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAK 74
+ IGL IR AA SA +YK+F IYRWNPD P EKP MQEYK
Sbjct: 5 AGIGRIGL----IRGLATQAAEVSAT------RYKSFKIYRWNPDTPAEKPRMQEYKVDL 54
Query: 75 N 75
N
Sbjct: 55 N 55
>sp|Q3B8J8|DHSB_XENLA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Xenopus laevis GN=sdhb PE=2 SV=1
Length = 282
Score = 217 bits (553), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 122/246 (49%), Positives = 149/246 (60%), Gaps = 43/246 (17%)
Query: 96 KYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLD 155
+ K FAIYRW+PDKP +KP MQ Y+VDLN + I N R +
Sbjct: 40 RIKKFAIYRWDPDKPGDKPRMQTYEVDLNTCGPMVLDA--LIKIKNEVDPTLTFRRSCRE 97
Query: 156 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
G +C C+ + NG L V ++ S
Sbjct: 98 G-----ICGSCAMN-----INGGNTLACTV---------------------RIDTNLSKV 126
Query: 216 SKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL-QRDKENIGNAQYLQSLD 274
SKI YPLPHMYVVKDLVPD++NFYAQYKSI+P+L ++DK G QYLQS++
Sbjct: 127 SKI---------YPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDKSQQGKEQYLQSIE 177
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ T +RL++L+
Sbjct: 178 DRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEERLSKLQ 237
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 238 DPFSLY 243
Score = 151 bits (382), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 109/204 (53%), Gaps = 35/204 (17%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI-----------------------RSFQLSA 83
+ K FAIYRW+PDKP +KP MQ Y+ N RS +
Sbjct: 40 RIKKFAIYRWDPDKPGDKPRMQTYEVDLNTCGPMVLDALIKIKNEVDPTLTFRRSCREGI 99
Query: 84 AASSAVPAEKPAKYKTFAIYRWNPDKPDE---KPTMQEYKVDLNNQLNFSA--------- 131
S A+ N K + P M K + + NF A
Sbjct: 100 CGSCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYL 159
Query: 132 RSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 191
+ + QYLQS++DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYR
Sbjct: 160 KKKDKSQQGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYR 219
Query: 192 WIIDSRDEKTADRLNQLKDPFSVY 215
W+IDSRD+ T +RL++L+DPFS+Y
Sbjct: 220 WMIDSRDDFTEERLSKLQDPFSLY 243
>sp|Q6FWS8|DHSB_CANGA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SDH2 PE=3
SV=1
Length = 253
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/263 (45%), Positives = 147/263 (55%), Gaps = 44/263 (16%)
Query: 79 FQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATA 138
F L + A + KTF IYRWNPDKP EKP +QEYKVDL + +
Sbjct: 2 FMLRVSRRGLATATSVPRLKTFKIYRWNPDKPTEKPHLQEYKVDLEDCGPMVLDA--LLK 59
Query: 139 ISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRD 198
I N Q R +G+ C C+ + +G A
Sbjct: 60 IKNEQDATLTFRRSCREGI-----CGSCAMN-----------IGGA-------------- 89
Query: 199 EKTADRLNQLKDPFSVYSKIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 257
+ + KID ++ K +KIYPLPHM++VKDLVPD+ FY QYKSIQP+L
Sbjct: 90 -----------NTLACLCKIDQDESKTTKIYPLPHMFIVKDLVPDLTGFYQQYKSIQPYL 138
Query: 258 QRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRW 317
QR + LQS+DDRKKLDGLYECILCACCSTSCPSYWWN E+YLGPAVLMQAYRW
Sbjct: 139 QRTDYPADGKEVLQSIDDRKKLDGLYECILCACCSTSCPSYWWNQEEYLGPAVLMQAYRW 198
Query: 318 IIDSRDEKTADRLNQLKDPFSVY 340
+IDSRD+ T R L++ S+Y
Sbjct: 199 LIDSRDQATKARRTMLQNSMSLY 221
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 25/43 (58%)
Query: 30 FQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKT 72
F L + A + KTF IYRWNPDKP EKP +QEYK
Sbjct: 2 FMLRVSRRGLATATSVPRLKTFKIYRWNPDKPTEKPHLQEYKV 44
>sp|A5PL98|DHSB_DANRE Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Danio rerio GN=sdhb PE=2 SV=1
Length = 280
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 148/246 (60%), Gaps = 43/246 (17%)
Query: 96 KYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLD 155
+ K F IYRW+PD +KP MQ Y++DLN + I N R +
Sbjct: 37 RIKKFQIYRWDPDTVGDKPRMQTYEIDLNTCGPMVLDA--LIKIKNEMDSTLTFRRSCRE 94
Query: 156 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
G +C C+ + NG L LN++ S
Sbjct: 95 G-----ICGSCAMN-----INGGNTLAC---------------------LNKIDTNTSKV 123
Query: 216 SKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL-QRDKENIGNAQYLQSLD 274
+KI YPLPHMYVVKDLVPDM+NFYAQYKSI+P+L ++D+ G QYLQS++
Sbjct: 124 TKI---------YPLPHMYVVKDLVPDMSNFYAQYKSIEPYLKKKDESQQGKQQYLQSVE 174
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR+KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ T DRL++L+
Sbjct: 175 DRQKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEDRLSKLQ 234
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 235 DPFSLY 240
Score = 147 bits (372), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 107/204 (52%), Gaps = 35/204 (17%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI-----------------------RSFQLSA 83
+ K F IYRW+PD +KP MQ Y+ N RS +
Sbjct: 37 RIKKFQIYRWDPDTVGDKPRMQTYEIDLNTCGPMVLDALIKIKNEMDSTLTFRRSCREGI 96
Query: 84 AASSAVPAEKPAKYKTFAIYRWNPDKPDE---KPTMQEYKVDLNNQLNFSA--------- 131
S A+ N K + P M K + + NF A
Sbjct: 97 CGSCAMNINGGNTLACLNKIDTNTSKVTKIYPLPHMYVVKDLVPDMSNFYAQYKSIEPYL 156
Query: 132 RSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 191
+ + QYLQS++DR+KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYR
Sbjct: 157 KKKDESQQGKQQYLQSVEDRQKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYR 216
Query: 192 WIIDSRDEKTADRLNQLKDPFSVY 215
W+IDSRD+ T DRL++L+DPFS+Y
Sbjct: 217 WMIDSRDDFTEDRLSKLQDPFSLY 240
>sp|Q007T0|DHSB_PIG Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Sus scrofa GN=SDHB PE=1 SV=1
Length = 280
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/133 (71%), Positives = 117/133 (87%), Gaps = 2/133 (1%)
Query: 210 DPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNA 267
+ + +ID N DKVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G
Sbjct: 109 NTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQ 168
Query: 268 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 327
QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 328 DRLNQLKDPFSVY 340
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 122/234 (52%), Gaps = 40/234 (17%)
Query: 17 FSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN- 75
F A L +++ + + A++ P + K FAIYRW+PDK +KP MQ Y+ N
Sbjct: 13 FPATTLGGACLQACRGAQTAAATAP-----RIKKFAIYRWDPDKTGDKPHMQTYEIDLNN 67
Query: 76 ----------------------IRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDE- 112
RS + S A+ N DK +
Sbjct: 68 CGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKI 127
Query: 113 --KPTMQEYKVDLNNQLNFSA---------RSSHATAISNAQYLQSLDDRKKLDGLYECI 161
P M K + + NF A + + QYLQS+++R+KLDGLYECI
Sbjct: 128 YPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECI 187
Query: 162 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
LCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+DPFS+Y
Sbjct: 188 LCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLY 241
>sp|Q3T189|DHSB_BOVIN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Bos taurus GN=SDHB PE=2 SV=1
Length = 280
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/133 (71%), Positives = 116/133 (87%), Gaps = 2/133 (1%)
Query: 210 DPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNA 267
+ + +ID N KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G
Sbjct: 109 NTLACTRRIDTNLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQGGKE 168
Query: 268 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 327
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 328 DRLNQLKDPFSVY 340
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 73 AKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
A + +L A + A + K FAIYRW+PDK +KP MQ Y++DLNN
Sbjct: 15 AAALGGARLQACRGAQTAAAAAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLNN 67
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 16 KFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
+F A L +++ + + A++A P + K FAIYRW+PDK +KP MQ Y+ N
Sbjct: 12 RFPAAALGGARLQACRGAQTAAAAAP-----RIKKFAIYRWDPDKTGDKPHMQTYEIDLN 66
>sp|P21913|DHSB_RAT Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Rattus norvegicus GN=Sdhb PE=2 SV=2
Length = 282
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/133 (71%), Positives = 116/133 (87%), Gaps = 2/133 (1%)
Query: 210 DPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNA 267
+ + +ID + KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G
Sbjct: 111 NTLACTRRIDTDLGKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQ 170
Query: 268 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 327
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRDE T
Sbjct: 171 QYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDEFTE 230
Query: 328 DRLNQLKDPFSVY 340
+RL +L+DPFS+Y
Sbjct: 231 ERLAKLQDPFSLY 243
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRDE T
Sbjct: 171 QYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDEFTE 230
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 231 ERLAKLQDPFSLY 243
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%)
Query: 72 TAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
TA Q A + A + KTFAIYRW+PDK +KP MQ YKVDLN
Sbjct: 16 TALGRVGLQFQACREAQTAAAAAPRIKTFAIYRWDPDKAGDKPRMQTYKVDLN 68
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 4 AVIGETILLKMSKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDE 63
AV+G ++ FSA TA Q A + A + KTFAIYRW+PDK +
Sbjct: 3 AVVGVSL---KRGFSA---TALGRVGLQFQACREAQTAAAAAPRIKTFAIYRWDPDKAGD 56
Query: 64 KPTMQEYKTAKN 75
KP MQ YK N
Sbjct: 57 KPRMQTYKVDLN 68
>sp|P21912|DHSB_HUMAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Homo sapiens GN=SDHB PE=1 SV=3
Length = 280
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 117/133 (87%), Gaps = 2/133 (1%)
Query: 210 DPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNA 267
+ + +ID N +KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G
Sbjct: 109 NTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQ 168
Query: 268 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 327
QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 328 DRLNQLKDPFSVY 340
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 81 LSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
L A+ + A + K FAIYRW+PDK +KP MQ Y+VDLN
Sbjct: 23 LQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYEVDLN 66
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 22 LTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
L A + L A+ + A + K FAIYRW+PDK +KP MQ Y+ N
Sbjct: 13 LPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYEVDLN 66
>sp|Q9CQA3|DHSB_MOUSE Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Mus musculus GN=Sdhb PE=1 SV=1
Length = 282
Score = 208 bits (529), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/126 (75%), Positives = 114/126 (90%), Gaps = 2/126 (1%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID + KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 118 RIDTDLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 177
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 178 DREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQ 237
Query: 335 DPFSVY 340
DPFSVY
Sbjct: 238 DPFSVY 243
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 113/222 (50%), Gaps = 35/222 (15%)
Query: 29 SFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKNIRS-------FQL 81
Q A + A + K FAIYRW+PDK +KP MQ Y+ N ++
Sbjct: 22 GLQFQACRGAQTAAAAAPRIKKFAIYRWDPDKTGDKPRMQTYEVDLNKCGPMVLDALIKI 81
Query: 82 SAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN----------------- 124
S + + + N + + + DL+
Sbjct: 82 KNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLSKVSKIYPLPHMYVIKDL 141
Query: 125 --NQLNFSA---------RSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSY 173
+ NF A + + QYLQS++DR+KLDGLYECILCACCSTSCPSY
Sbjct: 142 VPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGLYECILCACCSTSCPSY 201
Query: 174 WWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
WWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+DPFSVY
Sbjct: 202 WWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSVY 243
>sp|Q9YHT2|DHSB_CHICK Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1
Length = 290
Score = 208 bits (529), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 114/131 (87%), Gaps = 2/131 (1%)
Query: 212 FSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQY 269
+ KID + K +KIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L++ D+ G QY
Sbjct: 121 LACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQY 180
Query: 270 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 329
LQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +R
Sbjct: 181 LQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEER 240
Query: 330 LNQLKDPFSVY 340
L QL+DPFS+Y
Sbjct: 241 LAQLQDPFSLY 251
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 135/267 (50%), Gaps = 68/267 (25%)
Query: 1 MSVAVIGETI-------LLKMSKFSAIGLTAKN--IRSFQLSAAASSAVPAEKPAKYKTF 51
M+ AV+G ++ L+ GL A + R Q +AAA+S + K F
Sbjct: 1 MAAAVVGVSLRRGVPARFLRAGLRPVRGLEAVHGICRGAQTAAAATSRI--------KKF 52
Query: 52 AIYRWNPDKPDEKPTMQEYKTAKN-------------------------------IRSFQ 80
+IYRW+PDKP +KP MQ Y+ N S
Sbjct: 53 SIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCA 112
Query: 81 LSAAASSAVPAEK---PAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSA------ 131
++ A + + K P KT IY P M K + + NF A
Sbjct: 113 MNIAGGNTLACTKKIDPDLSKTTKIYPL--------PHMYVVKDLVPDLSNFYAQYKSIE 164
Query: 132 ---RSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQ 188
+ + QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQ
Sbjct: 165 PYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQ 224
Query: 189 AYRWIIDSRDEKTADRLNQLKDPFSVY 215
AYRW+IDSRD+ T +RL QL+DPFS+Y
Sbjct: 225 AYRWMIDSRDDYTEERLAQLQDPFSLY 251
>sp|P21911|DHSB_SCHPO Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sdh2 PE=3 SV=3
Length = 275
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 146/258 (56%), Gaps = 46/258 (17%)
Query: 84 AASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQ 143
+A+SA P + KTF IYRWNP+KP+ KP +Q+Y VDL + I N Q
Sbjct: 31 SATSANPQSQGENLKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVLDA--LIKIKNEQ 88
Query: 144 YLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTAD 203
R +G+ C C+ + NG L
Sbjct: 89 DPTLTFRRSCREGI-----CGSCAMN-----INGSNTL---------------------- 116
Query: 204 RLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKEN 263
+ I ++K +KIYPLPH ++VKDLVPD+ FY QYKSI+PWLQ D N
Sbjct: 117 ---------ACICNIKKDNKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQND--N 165
Query: 264 I-GNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSR 322
I + ++ QS DR KLDGLYECILCACCSTSCPSYWWN E+YLGPAVLMQAYRWIIDSR
Sbjct: 166 IPKDKEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSR 225
Query: 323 DEKTADRLNQLKDPFSVY 340
D+ TA RL+ +++ SVY
Sbjct: 226 DQATAKRLDVMQNSMSVY 243
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 35 AASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEY 70
+A+SA P + KTF IYRWNP+KP+ KP +Q+Y
Sbjct: 31 SATSANPQSQGENLKTFEIYRWNPEKPEVKPKLQKY 66
>sp|Q1RGP3|DHSB_RICBR Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia bellii
(strain RML369-C) GN=sdhB PE=3 SV=1
Length = 261
Score = 195 bits (496), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 100/115 (86%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
KIYPLPHM VVKDLVPDM++FYAQY+SI+PWL+ D NA+ LQS+ DR+KLDGLYEC
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPAPSNAERLQSIKDREKLDGLYEC 171
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
ILCACCSTSCPSYWWNG+KYLGPA+L+QAYRWI DSRD+ T +RL L+DPF +Y
Sbjct: 172 ILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDHTGERLEALEDPFKLY 226
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 69/78 (88%)
Query: 138 AISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSR 197
A SNA+ LQS+ DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPA+L+QAYRWI DSR
Sbjct: 149 APSNAERLQSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSR 208
Query: 198 DEKTADRLNQLKDPFSVY 215
D+ T +RL L+DPF +Y
Sbjct: 209 DDHTGERLEALEDPFKLY 226
>sp|A8WPF0|DHSB_CAEBR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Caenorhabditis briggsae GN=sdhb-1 PE=3
SV=2
Length = 282
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 141/253 (55%), Gaps = 45/253 (17%)
Query: 90 PAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLD 149
P + + KTF IYR+NP+ P KPT+Q K D++ + I N
Sbjct: 30 PKKTGNRIKTFEIYRFNPEAPGAKPTIQ--KFDVDLDQCGTMILDALIKIKNEVDPTLTF 87
Query: 150 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 209
R +G+ C C+ + GE L
Sbjct: 88 RRSCREGI-----CGSCAMN-----IGGENTL---------------------------- 109
Query: 210 DPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE-NIGNA 267
+ KIDA+ K +KIYPLPHM+VVKDLVPDMN FYAQY SIQPW+Q+ +G
Sbjct: 110 ---ACICKIDADTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGEK 166
Query: 268 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 327
Q QS+ +R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+
Sbjct: 167 QMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYAQ 226
Query: 328 DRLNQLKDPFSVY 340
+RL+++ D FS +
Sbjct: 227 ERLHRMHDSFSAF 239
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 41 PAEKPAKYKTFAIYRWNPDKPDEKPTMQEY 70
P + + KTF IYR+NP+ P KPT+Q++
Sbjct: 30 PKKTGNRIKTFEIYRFNPEAPGAKPTIQKF 59
>sp|Q92JJ8|DHSB_RICCN Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=sdhB PE=3 SV=1
Length = 261
Score = 194 bits (493), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 84/115 (73%), Positives = 100/115 (86%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
KIYPLPHM VVKDLVPDM++FYAQY+SI+PWL+ D N++ LQS+ DR+KLDGLYEC
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPTPSNSERLQSIKDREKLDGLYEC 171
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
ILCACCSTSCPSYWWNG+KYLGPA+L+QAYRWI DSRD+ T +RL L+DPF +Y
Sbjct: 172 ILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNTGERLEALEDPFKLY 226
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 68/76 (89%)
Query: 140 SNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 199
SN++ LQS+ DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPA+L+QAYRWI DSRD+
Sbjct: 151 SNSERLQSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDD 210
Query: 200 KTADRLNQLKDPFSVY 215
T +RL L+DPF +Y
Sbjct: 211 NTGERLEALEDPFKLY 226
>sp|P32420|DHSB_USTMA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Ustilago maydis (strain 521 / FGSC
9021) GN=SDH2 PE=3 SV=1
Length = 295
Score = 194 bits (493), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 149/276 (53%), Gaps = 52/276 (18%)
Query: 72 TAKNIRSFQLSAAASSAVPAE-------KPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
++ + +F +AAA A P KP K F IYRWNPDKP EKP +Q Y +DL
Sbjct: 20 SSSRVAAFSTTAAARLATPTSDNVGSSGKPQHLKQFKIYRWNPDKPSEKPRLQSYTLDL- 78
Query: 125 NQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPA 184
N LD K+ + L
Sbjct: 79 ----------------NQTGPMVLDALIKIKNEIDPTL---------------------- 100
Query: 185 VLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMN 244
++ R I D +N L + +ID + +KIYPLPHMY+VKDLVPD+
Sbjct: 101 TFRRSCREGICGSCAMNIDGVNTL----ACLCRIDKQND-TKIYPLPHMYIVKDLVPDLT 155
Query: 245 NFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEK 304
FY QY+SI+P+L+ + ++LQS ++R++LDGLYECILCACCSTSCPSYWWN ++
Sbjct: 156 QFYKQYRSIEPFLKSN-NTPSEGEHLQSPEERRRLDGLYECILCACCSTSCPSYWWNQDE 214
Query: 305 YLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
YLGPAVLMQAYRW+ DSRD+ +R +L++ FS+Y
Sbjct: 215 YLGPAVLMQAYRWMADSRDDFGEERRQKLENTFSLY 250
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 116/231 (50%), Gaps = 38/231 (16%)
Query: 23 TAKNIRSFQLSAAASSAVPAE-------KPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
++ + +F +AAA A P KP K F IYRWNPDKP EKP +Q Y N
Sbjct: 20 SSSRVAAFSTTAAARLATPTSDNVGSSGKPQHLKQFKIYRWNPDKPSEKPRLQSYTLDLN 79
Query: 76 -----------------------IRSFQLSAAASSAVPAEKPAKYKTFA-IYRWNPDKPD 111
RS + S A+ + I + N K
Sbjct: 80 QTGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIDKQNDTKIY 139
Query: 112 EKPTMQEYKVDLNNQLNF--SARSSHATAISN-----AQYLQSLDDRKKLDGLYECILCA 164
P M K + + F RS SN ++LQS ++R++LDGLYECILCA
Sbjct: 140 PLPHMYIVKDLVPDLTQFYKQYRSIEPFLKSNNTPSEGEHLQSPEERRRLDGLYECILCA 199
Query: 165 CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
CCSTSCPSYWWN ++YLGPAVLMQAYRW+ DSRD+ +R +L++ FS+Y
Sbjct: 200 CCSTSCPSYWWNQDEYLGPAVLMQAYRWMADSRDDFGEERRQKLENTFSLY 250
>sp|Q9ZEA1|DHSB_RICPR Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia
prowazekii (strain Madrid E) GN=sdhB PE=3 SV=1
Length = 261
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 84/115 (73%), Positives = 99/115 (86%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
KIYPLPHM VVKDLVPDM++FYAQY+SI+PWL+ D N++ LQS+ DR+KLDGLYEC
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKNDSPAPSNSERLQSIKDREKLDGLYEC 171
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
ILCACCSTSCPSYWWNG+KYLGPA+L+QAYRWI DSRD+ T RL L+DPF +Y
Sbjct: 172 ILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNTGARLEALEDPFKLY 226
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 68/78 (87%)
Query: 138 AISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSR 197
A SN++ LQS+ DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPA+L+QAYRWI DSR
Sbjct: 149 APSNSERLQSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSR 208
Query: 198 DEKTADRLNQLKDPFSVY 215
D+ T RL L+DPF +Y
Sbjct: 209 DDNTGARLEALEDPFKLY 226
>sp|P80480|DHSB_RECAM Succinate dehydrogenase [ubiquinone] iron-sulfur subunit
OS=Reclinomonas americana GN=SDH2 PE=3 SV=1
Length = 239
Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Query: 210 DPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQY 269
+ + ID N K KIYPLPHM+++KDLVPD++NFYAQYKSI+PW++ ++ + + ++
Sbjct: 77 NTLACIKSIDTNKKEMKIYPLPHMHIIKDLVPDLSNFYAQYKSIEPWMKTTEKKL-DKEF 135
Query: 270 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 329
QS +DR+KLDGLYEC+LCACCSTSCPSYWWN +KYLGPAVL+QAYRWI+DSRD+ T +R
Sbjct: 136 YQSRNDREKLDGLYECVLCACCSTSCPSYWWNSDKYLGPAVLLQAYRWIVDSRDQGTRER 195
Query: 330 LNQLKDPFSVY 340
L L+DPF +Y
Sbjct: 196 LQYLEDPFKLY 206
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 107/207 (51%), Gaps = 39/207 (18%)
Query: 44 KPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKNI-----------------------RSFQ 80
K K F +YRWNPDK EKP + Y N RS +
Sbjct: 4 KKEKIMLFKVYRWNPDK-KEKPHISTYSVDLNSCGPMVLDALIKIKNEQDSTLTFRRSCR 62
Query: 81 LSAAASSAVPAEKPAKYKTFA-IYRWNPDKPDEK----PTMQEYKVDLNNQLNFSAR--- 132
S A+ + T A I + +K + K P M K + + NF A+
Sbjct: 63 EGVCGSCAMNIDGT---NTLACIKSIDTNKKEMKIYPLPHMHIIKDLVPDLSNFYAQYKS 119
Query: 133 ----SSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQ 188
+ ++ QS +DR+KLDGLYEC+LCACCSTSCPSYWWN +KYLGPAVL+Q
Sbjct: 120 IEPWMKTTEKKLDKEFYQSRNDREKLDGLYECVLCACCSTSCPSYWWNSDKYLGPAVLLQ 179
Query: 189 AYRWIIDSRDEKTADRLNQLKDPFSVY 215
AYRWI+DSRD+ T +RL L+DPF +Y
Sbjct: 180 AYRWIVDSRDQGTRERLQYLEDPFKLY 206
>sp|Q09545|DHSB_CAEEL Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Caenorhabditis elegans GN=sdhb-1 PE=2
SV=1
Length = 298
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 106/134 (79%), Gaps = 2/134 (1%)
Query: 209 KDPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE-NIGN 266
++ + KID++ K +KIYPLPHM+VVKDLVPDMN FYAQY SIQPW+Q+ +G
Sbjct: 122 QNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGE 181
Query: 267 AQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 326
Q QS+ +R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+
Sbjct: 182 KQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYA 241
Query: 327 ADRLNQLKDPFSVY 340
+RL+++ D FS +
Sbjct: 242 TERLHRMHDSFSAF 255
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 63/77 (81%)
Query: 139 ISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRD 198
+ Q QS+ +R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD
Sbjct: 179 LGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRD 238
Query: 199 EKTADRLNQLKDPFSVY 215
+ +RL+++ D FS +
Sbjct: 239 DYATERLHRMHDSFSAF 255
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 96 KYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
+ KTF IYR+NP+ P KPT+Q++ VDL+
Sbjct: 52 RIKTFEIYRFNPEAPGAKPTVQKFDVDLD 80
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEY 70
+ KTF IYR+NP+ P KPT+Q++
Sbjct: 52 RIKTFEIYRFNPEAPGAKPTVQKF 75
>sp|Q4UN71|DHSB_RICFE Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=sdhB PE=3 SV=1
Length = 261
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 98/115 (85%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
KIYPLPHM VVKDLVPDM++FYAQY+SI+PWL+ D N++ LQS+ R+KLDGLYEC
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPTPSNSERLQSIKGREKLDGLYEC 171
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
ILCACCSTSCPSYWWNG+KYLGPA+L+QAYRWI DSRD+ T +RL L+DP +Y
Sbjct: 172 ILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDHTGERLEDLEDPSKLY 226
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 66/76 (86%)
Query: 140 SNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 199
SN++ LQS+ R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPA+L+QAYRWI DSRD+
Sbjct: 151 SNSERLQSIKGREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDD 210
Query: 200 KTADRLNQLKDPFSVY 215
T +RL L+DP +Y
Sbjct: 211 HTGERLEDLEDPSKLY 226
>sp|Q68XS0|DHSB_RICTY Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=sdhB PE=3 SV=1
Length = 261
Score = 188 bits (478), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 82/115 (71%), Positives = 97/115 (84%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
KIYPLPHM VVKDLVPDM++FY QY+SI+PWL+ D N++ LQS+ DR+KLDGLYEC
Sbjct: 112 KIYPLPHMKVVKDLVPDMSHFYTQYESIEPWLKNDNPAPSNSERLQSIQDREKLDGLYEC 171
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
ILCACCSTSCPSYWWN +KYLGPA+L+QAYRWI DSRD+ T RL L+DPF +Y
Sbjct: 172 ILCACCSTSCPSYWWNSDKYLGPAILLQAYRWIADSRDDNTGARLEALEDPFKLY 226
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 67/78 (85%)
Query: 138 AISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSR 197
A SN++ LQS+ DR+KLDGLYECILCACCSTSCPSYWWN +KYLGPA+L+QAYRWI DSR
Sbjct: 149 APSNSERLQSIQDREKLDGLYECILCACCSTSCPSYWWNSDKYLGPAILLQAYRWIADSR 208
Query: 198 DEKTADRLNQLKDPFSVY 215
D+ T RL L+DPF +Y
Sbjct: 209 DDNTGARLEALEDPFKLY 226
>sp|P21801|DHSB_YEAST Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SDH2 PE=1 SV=1
Length = 266
Score = 187 bits (476), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 87/133 (65%), Positives = 103/133 (77%), Gaps = 1/133 (0%)
Query: 209 KDPFSVYSKIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNA 267
++ + KID N+ K KIYPLPHM++VKDLVPD+ NFY QYKSIQP+LQR
Sbjct: 102 RNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQRSSFPKDGT 161
Query: 268 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 327
+ LQS++DRKKLDGLYECILCACCSTSCPSYWWN E+YLGPAVLMQAYRW+IDSRD+ T
Sbjct: 162 EVLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDQATK 221
Query: 328 DRLNQLKDPFSVY 340
R L + S+Y
Sbjct: 222 TRKAMLNNSMSLY 234
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 101/209 (48%), Gaps = 46/209 (22%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKN-----------------------IRSFQLSA 83
+ KTF +YRWNPD+P KP +Q Y+ N RS +
Sbjct: 32 RLKTFKVYRWNPDEPSAKPHLQSYQVDLNDCGPMVLDALLKIKDEQDSTLTFRRSCREGI 91
Query: 84 AASSAVPAEKPAKYKTFAIYRWNPDK-----------------PDEKPTMQEYKVDLNNQ 126
S A+ N K PD Q+YK +
Sbjct: 92 CGSCAMNIGGRNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYK-SIQPY 150
Query: 127 LNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVL 186
L S+ T + LQS++DRKKLDGLYECILCACCSTSCPSYWWN E+YLGPAVL
Sbjct: 151 LQRSSFPKDGTEV-----LQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVL 205
Query: 187 MQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
MQAYRW+IDSRD+ T R L + S+Y
Sbjct: 206 MQAYRWLIDSRDQATKTRKAMLNNSMSLY 234
>sp|O42772|DHSB_MYCGR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Mycosphaerella graminicola GN=SDH2 PE=3
SV=1
Length = 297
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 95/118 (80%)
Query: 223 KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGL 282
K ++IYPLPH YVVKDLVPDM FY QYKSI+P+LQRD + QS+ DRKKLDGL
Sbjct: 147 KETRIYPLPHTYVVKDLVPDMTQFYKQYKSIKPYLQRDTAPPDGKENRQSVADRKKLDGL 206
Query: 283 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
YECILCACCSTSCPSYWWN E+YLGPAVL+Q+YRWI DSRDEKTA R + L + S+Y
Sbjct: 207 YECILCACCSTSCPSYWWNSEEYLGPAVLLQSYRWINDSRDEKTAQRKDALNNSMSLY 264
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 61/70 (87%)
Query: 146 QSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 205
QS+ DRKKLDGLYECILCACCSTSCPSYWWN E+YLGPAVL+Q+YRWI DSRDEKTA R
Sbjct: 195 QSVADRKKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLLQSYRWINDSRDEKTAQRK 254
Query: 206 NQLKDPFSVY 215
+ L + S+Y
Sbjct: 255 DALNNSMSLY 264
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 46 AKYKTFAIYRWNPDKPDEKPTMQEY 70
AK KTF IYRWNPD+P +KP MQ Y
Sbjct: 61 AKTKTFHIYRWNPDQPTDKPRMQSY 85
>sp|Q9FJP9|DHSB3_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3,
mitochondrial OS=Arabidopsis thaliana GN=SDH2-3 PE=2
SV=1
Length = 309
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 144/278 (51%), Gaps = 55/278 (19%)
Query: 65 PTMQEYKTAKNIRSFQLSAAASSAVPAEKPAKYKT----FAIYRWNPDKPDEKPTMQEYK 120
P + +K A+++ L S + EK ++K F IYRWNPDKP+ KP +Q +
Sbjct: 33 PILNGHKAAQDLSKDTLK---SQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFF 89
Query: 121 VDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECI--LCACCSTSCPSYWWNGE 178
VDL+ S + Q +++ DD L C +C CS +
Sbjct: 90 VDLS--------SCGPMVLDVLQKIKAEDD-ASLSYRRSCREGICGSCSMN--------- 131
Query: 179 KYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN-DKVSKIYPLPHMYVVK 237
ID + + I+ N K + I PLPHMYV+K
Sbjct: 132 ---------------IDGTNT------------VACLKPINPNTSKPTIITPLPHMYVIK 164
Query: 238 DLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPS 297
DLV D+ NFY QYKS++PWL+ K ++ QS DRKKLDGLYECILCACC+TSCPS
Sbjct: 165 DLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLYECILCACCTTSCPS 224
Query: 298 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335
YWWN E++ GPA L+QAYRWI DSRDE +RL + +
Sbjct: 225 YWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITE 262
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 49 KTFAIYRWNPDKPDEKPTMQEY 70
K F IYRWNPDKP+ KP +Q +
Sbjct: 67 KEFKIYRWNPDKPNSKPFLQSF 88
>sp|Q70KF8|DHSB_UROFA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Uromyces fabae GN=SDH2 PE=3 SV=1
Length = 283
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
KIYPLPHMY++KDLVPDM +FY QYKSI+P+L+ D ++LQS +DRKKLDG+YEC
Sbjct: 138 KIYPLPHMYIIKDLVPDMTHFYKQYKSIEPFLKNDNPP-AQGEFLQSPEDRKKLDGMYEC 196
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
ILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+ DSRD DR +L++ S+Y
Sbjct: 197 ILCACCSTSCPSYWWNQDEYLGPAVLMQAYRWMADSRDSYGEDRKEKLQNTLSLY 251
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%)
Query: 140 SNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 199
+ ++LQS +DRKKLDG+YECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+ DSRD
Sbjct: 176 AQGEFLQSPEDRKKLDGMYECILCACCSTSCPSYWWNQDEYLGPAVLMQAYRWMADSRDS 235
Query: 200 KTADRLNQLKDPFSVY 215
DR +L++ S+Y
Sbjct: 236 YGEDRKEKLQNTLSLY 251
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 6/38 (15%)
Query: 86 SSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDL 123
SSAVP K F+IYRWNPD+P +KPT+Q Y +DL
Sbjct: 46 SSAVPV------KEFSIYRWNPDEPSKKPTLQTYSIDL 77
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%), Gaps = 6/34 (17%)
Query: 37 SSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEY 70
SSAVP K F+IYRWNPD+P +KPT+Q Y
Sbjct: 46 SSAVPV------KEFSIYRWNPDEPSKKPTLQTY 73
>sp|Q8LB02|DHSB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2,
mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1
SV=2
Length = 280
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
Query: 212 FSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYL 270
+ +KI++ K + I PLPHM+V+KDLV DM NFY QYKSI+PWL+R + ++ + L
Sbjct: 119 LACLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEIL 178
Query: 271 QSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 330
QS DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A RWI DSRDE T +RL
Sbjct: 179 QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERL 238
Query: 331 NQLKDPFSVY 340
+ D F +Y
Sbjct: 239 EAIDDEFKLY 248
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 113/249 (45%), Gaps = 35/249 (14%)
Query: 1 MSVAVIGETILLKMSKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK 60
M+ +IG + K S+ S + S A S A A KTF IYRWNPD
Sbjct: 1 MAFGLIGRVVGTKSSRLSTAARLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDN 60
Query: 61 PDEKPTMQEYKT---------------AKN--------IRSFQLSAAASSAVPAEKPAKY 97
P KP +Q+YK KN RS + S A+ +
Sbjct: 61 PG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGL 119
Query: 98 KTFAIYRWNPDKPDEKP-----TMQEYKVDLNNQLNFSA------RSSHATAISNAQYLQ 146
+ P +++ VD+ N N + + ++ + LQ
Sbjct: 120 ACLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQ 179
Query: 147 SLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLN 206
S DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A RWI DSRDE T +RL
Sbjct: 180 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLE 239
Query: 207 QLKDPFSVY 215
+ D F +Y
Sbjct: 240 AIDDEFKLY 248
>sp|Q59662|DHSB_PARDE Succinate dehydrogenase iron-sulfur subunit OS=Paracoccus
denitrificans GN=sdhB PE=3 SV=1
Length = 259
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 95/114 (83%), Gaps = 1/114 (0%)
Query: 227 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECI 286
IYPLPHM VVKDLVPD+ +FYAQ+ S+QP+L + + ++ QS++DRKKLDGLYEC+
Sbjct: 113 IYPLPHMPVVKDLVPDLTHFYAQHASVQPYLITETPT-PDKEWRQSIEDRKKLDGLYECV 171
Query: 287 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
+CA CST+CPSYWWNG++YLGPA L+ AYRWIIDSRDE T +RL+ L+DPF +Y
Sbjct: 172 MCASCSTACPSYWWNGDRYLGPAALLHAYRWIIDSRDEATGERLDSLEDPFKLY 225
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 104/207 (50%), Gaps = 37/207 (17%)
Query: 43 EKPAKYKTFAIYRWNPDKPDEKPTMQEY-----------------------KTAKNIRSF 79
E + F IYRW+PD E P + Y T RS
Sbjct: 22 EGATNVRRFNIYRWDPDT-GENPRIDTYFVDMDKCGPMVLDALIKIKNEIDPTLTFRRSC 80
Query: 80 QLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEK----PTMQEYKVDLNNQLNFSARSSH 135
+ S A+ + IY + K D P M K + + +F A+ +
Sbjct: 81 REGICGSCAMNID--GGNHLACIYGMDEIKGDVNIYPLPHMPVVKDLVPDLTHFYAQHAS 138
Query: 136 A-------TAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQ 188
T + ++ QS++DRKKLDGLYEC++CA CST+CPSYWWNG++YLGPA L+
Sbjct: 139 VQPYLITETPTPDKEWRQSIEDRKKLDGLYECVMCASCSTACPSYWWNGDRYLGPAALLH 198
Query: 189 AYRWIIDSRDEKTADRLNQLKDPFSVY 215
AYRWIIDSRDE T +RL+ L+DPF +Y
Sbjct: 199 AYRWIIDSRDEATGERLDSLEDPFKLY 225
>sp|P48933|DHSB_CYACA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit
OS=Cyanidium caldarium GN=SDH2 PE=3 SV=1
Length = 262
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 94/131 (71%)
Query: 210 DPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQY 269
+ + K++ + + +YPLPH++V+KDLV D+ NFYAQY+ IQPWLQ +
Sbjct: 89 NSLACLQKLNIKNNIIYVYPLPHIFVLKDLVVDLTNFYAQYRLIQPWLQSSLNIKSKKEI 148
Query: 270 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 329
QS DR LDGLYECILCACCS SCPSYWWN +KYLGPAVL+QAYRWI+DSRD+ T R
Sbjct: 149 YQSKQDRLYLDGLYECILCACCSASCPSYWWNHDKYLGPAVLLQAYRWIVDSRDDNTLSR 208
Query: 330 LNQLKDPFSVY 340
L LKD + +Y
Sbjct: 209 LLSLKDSYKLY 219
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 59/76 (77%)
Query: 140 SNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 199
S + QS DR LDGLYECILCACCS SCPSYWWN +KYLGPAVL+QAYRWI+DSRD+
Sbjct: 144 SKKEIYQSKQDRLYLDGLYECILCACCSASCPSYWWNHDKYLGPAVLLQAYRWIVDSRDD 203
Query: 200 KTADRLNQLKDPFSVY 215
T RL LKD + +Y
Sbjct: 204 NTLSRLLSLKDSYKLY 219
>sp|Q8LBZ7|DHSB1_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1,
mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1
SV=2
Length = 279
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 92/130 (70%), Gaps = 1/130 (0%)
Query: 212 FSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDK-ENIGNAQYL 270
+ +KI + I PLPHM+V+KDLV DM NFY QYKSI+PWL+R ++ + L
Sbjct: 120 LACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEIL 179
Query: 271 QSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 330
QS DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A RWI DSRDE T +RL
Sbjct: 180 QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERL 239
Query: 331 NQLKDPFSVY 340
+ D F +Y
Sbjct: 240 EAIDDEFKLY 249
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 117/251 (46%), Gaps = 38/251 (15%)
Query: 1 MSVAVIGETILLKMSKF-SAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPD 59
M+ +IG + K SK +A L S A ++ + + KTF IYRWNPD
Sbjct: 1 MASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPD 60
Query: 60 KPDEKPTMQEYKT---------------AKN--------IRSFQLSAAASSAVPAEKPAK 96
P KP +Q Y+ KN RS + S A+ +
Sbjct: 61 NPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNG 119
Query: 97 YKTFAIYRWNPDKPDEKP-----TMQEYKVDLNNQLN-------FSARSSHATAISNAQY 144
+ + P +++ VD+ N N + R + A+ + +
Sbjct: 120 LACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPAS-VPAKEI 178
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQS DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A RWI DSRDE T +R
Sbjct: 179 LQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKER 238
Query: 205 LNQLKDPFSVY 215
L + D F +Y
Sbjct: 239 LEAIDDEFKLY 249
>sp|P48932|DHSB_CHOCR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit
OS=Chondrus crispus GN=SDH2 PE=3 SV=1
Length = 250
Score = 164 bits (415), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 90/114 (78%), Gaps = 1/114 (0%)
Query: 227 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECI 286
IYPLPH Y++KDLVPD++NFYAQYK I+PWL +K + LQS DR +LDGLYECI
Sbjct: 106 IYPLPHTYIIKDLVPDLSNFYAQYKLIKPWLI-NKIGFSLKENLQSKIDRLELDGLYECI 164
Query: 287 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
LCACCS SCPSYWWN +KYLGPA+L+QAYRWI+DSRD T +RLN L + ++
Sbjct: 165 LCACCSASCPSYWWNQDKYLGPAILLQAYRWIVDSRDNSTENRLNFLNNKMRLF 218
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 72/109 (66%), Gaps = 13/109 (11%)
Query: 110 PDEKPTMQEYKVD---LNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACC 166
PD +YK+ L N++ FS + + LQS DR +LDGLYECILCACC
Sbjct: 120 PDLSNFYAQYKLIKPWLINKIGFSLKEN----------LQSKIDRLELDGLYECILCACC 169
Query: 167 STSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
S SCPSYWWN +KYLGPA+L+QAYRWI+DSRD T +RLN L + ++
Sbjct: 170 SASCPSYWWNQDKYLGPAILLQAYRWIVDSRDNSTENRLNFLNNKMRLF 218
>sp|P80477|DHSB_PORPU Succinate dehydrogenase [ubiquinone] iron-sulfur subunit
OS=Porphyra purpurea GN=SDH2 PE=3 SV=1
Length = 239
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 89/116 (76%), Gaps = 2/116 (1%)
Query: 218 IDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRK 277
I N + IYPLPHMY++KDLVPD++NF++QYK I+PWL + ++YLQS DR
Sbjct: 87 IKTNANIITIYPLPHMYIIKDLVPDLSNFFSQYKYIKPWLINNVPK--KSEYLQSEKDRS 144
Query: 278 KLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
+L+G+YECILCACCS SCPSYWWN +KYLGPA+L+QAYRW+ DSRD +RL L
Sbjct: 145 ELNGIYECILCACCSASCPSYWWNHDKYLGPAILLQAYRWLADSRDTNAKERLKLL 200
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 142 AQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 201
++YLQS DR +L+G+YECILCACCS SCPSYWWN +KYLGPA+L+QAYRW+ DSRD
Sbjct: 134 SEYLQSEKDRSELNGIYECILCACCSASCPSYWWNHDKYLGPAILLQAYRWLADSRDTNA 193
Query: 202 ADRLNQL 208
+RL L
Sbjct: 194 KERLKLL 200
>sp|Q55CC2|DHSB_DICDI Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,
mitochondrial OS=Dictyostelium discoideum GN=sdhB PE=3
SV=1
Length = 287
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 91/121 (75%), Gaps = 6/121 (4%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQ--RDKENIGNAQYLQSLDDRKKLDGLY 283
K+YPLPHM+VV+DL+PD+++FY Q+KSI+PWL+ D + LQS ++R KLDGLY
Sbjct: 135 KVYPLPHMHVVRDLIPDLSHFYTQHKSIKPWLEPAVDVPRYNGKEILQSKENRHKLDGLY 194
Query: 284 ECILCACCSTSCPSYWW--NGE-KYLGPAVLMQAYRWIIDSRDEKTADRLNQL-KDPFSV 339
ECILCACCSTSCPSYWW G+ YLGPAVL+QAYRWI DSRD DRL L +D V
Sbjct: 195 ECILCACCSTSCPSYWWSEGGDGGYLGPAVLLQAYRWIADSRDSIQKDRLAILSEDQMKV 254
Query: 340 Y 340
Y
Sbjct: 255 Y 255
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 58/77 (75%), Gaps = 4/77 (5%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWW--NGE-KYLGPAVLMQAYRWIIDSRDE 199
+ LQS ++R KLDGLYECILCACCSTSCPSYWW G+ YLGPAVL+QAYRWI DSRD
Sbjct: 179 EILQSKENRHKLDGLYECILCACCSTSCPSYWWSEGGDGGYLGPAVLLQAYRWIADSRDS 238
Query: 200 KTADRLNQL-KDPFSVY 215
DRL L +D VY
Sbjct: 239 IQKDRLAILSEDQMKVY 255
>sp|P07014|DHSB_ECOLI Succinate dehydrogenase iron-sulfur subunit OS=Escherichia coli
(strain K12) GN=sdhB PE=1 SV=1
Length = 238
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 128/241 (53%), Gaps = 41/241 (17%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYE 159
F+IYR+NPD D+ P MQ+Y ++ + + + I + SL R+
Sbjct: 5 FSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDA---LIQLKEKDPSLSFRR------- 53
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKID 219
+C C S N G A + + S ++
Sbjct: 54 ----SCREGVCGSDGLNMNGKNGLACI--------------------------TPISALN 83
Query: 220 ANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKL 279
K I PLP + V++DLV DM FYAQY+ I+P+L + +N ++LQ + R+KL
Sbjct: 84 QPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKL 143
Query: 280 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSV 339
DGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++IDSRD +T RL+ L D FSV
Sbjct: 144 DGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSV 203
Query: 340 Y 340
+
Sbjct: 204 F 204
>sp|Q8ZQU2|DHSB_SALTY Succinate dehydrogenase iron-sulfur subunit OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=sdhB PE=3 SV=2
Length = 238
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 124/242 (51%), Gaps = 43/242 (17%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYE 159
F+IYR+NPD D P MQ+Y ++ + +A +Q + L
Sbjct: 5 FSIYRYNPDV-DNAPRMQDYTLE--------GEEGRDMMLLDA-LIQLKEKDPSLSFRRS 54
Query: 160 CILCACCSTSCPSYWWNGEKYLGP-AVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKI 218
C C S NG + P + L Q + I+
Sbjct: 55 CREGVCGSDGLNMNGKNGLACITPISALTQPGKKIV------------------------ 90
Query: 219 DANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKK 278
I PLP + V++DLV DM FYAQY+ I+P+L + +N ++LQ + R+K
Sbjct: 91 --------IRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREK 142
Query: 279 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFS 338
LDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++IDSRD +T RL + D FS
Sbjct: 143 LDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLEGMSDAFS 202
Query: 339 VY 340
V+
Sbjct: 203 VF 204
>sp|P51053|DHSB_COXBU Succinate dehydrogenase iron-sulfur subunit OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=sdhB PE=3 SV=1
Length = 235
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 139/242 (57%), Gaps = 45/242 (18%)
Query: 99 TFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLY 158
TF+I R+NP+ D+KP MQ++++D++ + + NA L++L ++ GL
Sbjct: 2 TFSIMRFNPET-DKKPYMQDFELDVS--------AIQGKMLLNA--LEALREKHPDIGLR 50
Query: 159 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKI 218
+C C S N I+ ++ + QLKD
Sbjct: 51 R----SCAEGVCGSDGMN-----------------INGKNALAC--VTQLKD-------- 79
Query: 219 DANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKK 278
D+V + PLP +++DL+ DM FYAQYK ++P+L D+E + LQS ++R K
Sbjct: 80 -LPDRVV-VRPLPGFPIIRDLIVDMEQFYAQYKKVKPYLLNDQE-APQKERLQSPEERAK 136
Query: 279 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFS 338
LDGLYECILCACCS+SCPSYWWN +K++GPA L+ +YR+I DSRD K +RL+ +KDP+S
Sbjct: 137 LDGLYECILCACCSSSCPSYWWNPDKFIGPAGLLWSYRFIADSRDSKEKERLDAMKDPYS 196
Query: 339 VY 340
V+
Sbjct: 197 VF 198
>sp|Q10761|FRDB_MYCTU Fumarate reductase iron-sulfur subunit OS=Mycobacterium
tuberculosis GN=frdB PE=3 SV=1
Length = 247
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLDDRKKLDGLYE 284
++ P+ + V++DLV D+++F A+ S++PWL R D+ + + +Y Q+ +
Sbjct: 89 RVEPMRNFPVIRDLVVDISDFMAKLPSVKPWLVRHDEPPVEDGEYRQTPAELDAFKQFSM 148
Query: 285 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
CI C C ++CP Y + + +LGPA + R+ +DSRD+ ADR + L
Sbjct: 149 CINCMLCYSACPVYALDPD-FLGPAAIALGQRYNLDSRDQGAADRRDVL 196
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 139 ISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRD 198
+ + +Y Q+ + CI C C ++CP Y + + +LGPA + R+ +DSRD
Sbjct: 128 VEDGEYRQTPAELDAFKQFSMCINCMLCYSACPVYALDPD-FLGPAAIALGQRYNLDSRD 186
Query: 199 EKTADRLNQL 208
+ ADR + L
Sbjct: 187 QGAADRRDVL 196
>sp|P0AC50|FRDB_SHIFL Fumarate reductase iron-sulfur subunit OS=Shigella flexneri GN=frdB
PE=3 SV=2
Length = 244
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 149
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL
Sbjct: 150 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQL 196
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYS 216
CI C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+S
Sbjct: 149 CINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWS 204
>sp|P0AC47|FRDB_ECOLI Fumarate reductase iron-sulfur subunit OS=Escherichia coli (strain
K12) GN=frdB PE=1 SV=2
Length = 244
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 149
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL
Sbjct: 150 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQL 196
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYS 216
CI C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+S
Sbjct: 149 CINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWS 204
>sp|P0AC48|FRDB_ECOL6 Fumarate reductase iron-sulfur subunit OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=frdB PE=3 SV=2
Length = 244
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 149
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL
Sbjct: 150 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQL 196
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYS 216
CI C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+S
Sbjct: 149 CINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWS 204
>sp|P0AC49|FRDB_ECO57 Fumarate reductase iron-sulfur subunit OS=Escherichia coli O157:H7
GN=frdB PE=3 SV=2
Length = 244
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 149
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL
Sbjct: 150 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQL 196
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYS 216
CI C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+S
Sbjct: 149 CINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWS 204
>sp|P20921|FRDB_PROVU Fumarate reductase iron-sulfur subunit OS=Proteus vulgaris GN=frdB
PE=3 SV=2
Length = 245
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
+I L + V +DLV DM +F ++I+P++ + Q+ K C
Sbjct: 91 RIEALGNFPVERDLVVDMTHFIESLEAIKPYILGNDRKPSEGPNKQTPAQMAKYHQFSGC 150
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
I C C +CP + N E ++GPA + A R+ DSRD +R+ QL
Sbjct: 151 INCGLCYAACPQFGLNPE-FIGPAAITLAQRYNTDSRDHGAKERMPQL 197
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYS 216
CI C C +CP + N E ++GPA + A R+ DSRD +R+ QL V+S
Sbjct: 150 CINCGLCYAACPQFGLNPE-FIGPAAITLAQRYNTDSRDHGAKERMPQLNGENGVWS 205
>sp|P44893|FRDB_HAEIN Fumarate reductase iron-sulfur subunit OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=frdB PE=3
SV=1
Length = 256
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDK-----------ENIGNAQYLQSLD 274
+I PL + + +DLV D+++F ++I+P++ ++ + + ++ Q+
Sbjct: 90 RIEPLANFPIERDLVVDLSHFIESLEAIKPYIIGNEAPALDGKPHPSKELQVSRTKQTPA 149
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
+K CI C C +CP + N E +LGPA + A+R+ +D+RD A R++ L
Sbjct: 150 QLEKYRQFSMCINCGLCYAACPQFGLNPE-FLGPAAITMAHRYNLDNRDHGKAKRMSLL 207
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYS 216
CI C C +CP + N E +LGPA + A+R+ +D+RD A R++ L V+S
Sbjct: 160 CINCGLCYAACPQFGLNPE-FLGPAAITMAHRYNLDNRDHGKAKRMSLLNGKNGVWS 215
>sp|P17596|FRDB_WOLSU Fumarate reductase iron-sulfur subunit OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=frdB PE=1 SV=1
Length = 239
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 219 DANDKVSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWLQRDKEN-IGNAQYLQSLDDR 276
D D V + PLP ++KDL D N F + ++ W+ KE+ I + +
Sbjct: 83 DFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVA 142
Query: 277 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 326
+++ L CI C CC +C + E ++G A L + R++ID DE+T
Sbjct: 143 QEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERT 191
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 157 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL----KDPF 212
L CI C CC +C + E ++G A L + R++ID DE+T + +L F
Sbjct: 148 LDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVF 206
Query: 213 SVYSKIDANDKVSKIYPL 230
+ + +D K PL
Sbjct: 207 GCMTLLACHDVCPKNLPL 224
>sp|Q9ZMP1|FRDB_HELPJ Fumarate reductase iron-sulfur subunit OS=Helicobacter pylori
(strain J99) GN=frdB PE=3 SV=1
Length = 245
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 222 DKVSKIYPLPHMYVVKDLVPDMNNFYAQY-KSIQPWLQRDKE-NIGNAQYLQSLDDRKKL 279
+ V + P+P ++KDL + ++++ K ++ W +E +I + D+ +++
Sbjct: 89 NGVITLMPMPSFTLIKDLSVNTGDWFSDMTKRVESWAHSKEEVDITKPEKRVEPDEAQEV 148
Query: 280 DGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
L CI C CC SC + ++G A + +A R++IDS DE++ D +L
Sbjct: 149 FELDRCIECGCCIASCGTKLMR-PNFIGAAGMNRAMRFMIDSHDERSDDDFYEL 201
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 122 DLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYL 181
D+ ++ A S I+ + D+ +++ L CI C CC SC + ++
Sbjct: 116 DMTKRVESWAHSKEEVDITKPEKRVEPDEAQEVFELDRCIECGCCIASCGTKLMR-PNFI 174
Query: 182 GPAVLMQAYRWIIDSRDEKTADRLNQL----KDPFSVYSKIDANDKVSKIYPL 230
G A + +A R++IDS DE++ D +L F S I +D K PL
Sbjct: 175 GAAGMNRAMRFMIDSHDERSDDDFYELVGDDDGVFGCMSLIACHDTCPKELPL 227
>sp|O06914|FRDB_HELPY Fumarate reductase iron-sulfur subunit OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=frdB PE=3 SV=2
Length = 245
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 224 VSKIYPLPHMYVVKDLVPDMNN-FYAQYKSIQPWLQRDKE-NIGNAQYLQSLDDRKKLDG 281
V + P+P ++KDL + + F K ++ W +E +I + D+ +++
Sbjct: 91 VITLMPMPSFTLIKDLSVNTGDWFLDMTKRVESWAHSKEEVDITRPEKRVEPDEAQEVFE 150
Query: 282 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
L CI C CC SC + ++G A + +A R++IDS DE+ D +L
Sbjct: 151 LDRCIECGCCIASCGTKLMR-PNFIGAAGMNRAMRFMIDSHDERNDDDFYEL 201
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 121 VDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKY 180
+D+ ++ A S I+ + D+ +++ L CI C CC SC + +
Sbjct: 115 LDMTKRVESWAHSKEEVDITRPEKRVEPDEAQEVFELDRCIECGCCIASCGTKLMR-PNF 173
Query: 181 LGPAVLMQAYRWIIDSRDEKTADRLNQL----KDPFSVYSKIDANDKVSKIYPL 230
+G A + +A R++IDS DE+ D +L F S I +D K PL
Sbjct: 174 IGAAGMNRAMRFMIDSHDERNDDDFYELVGDDDGVFGCMSLIACHDTCPKELPL 227
>sp|Q6LYC4|Y1067_METMP Uncharacterized iron-sulfur protein MMP1067 OS=Methanococcus
maripaludis (strain S2 / LL) GN=MMP1067 PE=3 SV=1
Length = 494
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 227 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENI------GNAQYLQSLDDRKKLD 280
I PL V+ DLV D +Y + +++ ++Q+ E I G Y L D KK+
Sbjct: 76 IEPLEGFDVISDLVVDREPYYKKIGTLRNYIQKKNEKISEKELDGLKLYPDDLKDVKKIR 135
Query: 281 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 324
G +C+ C CP+ ++ Y GP ++ Q R+ D +DE
Sbjct: 136 GCIDCLSCI---AMCPARKYSN--YPGPTLMRQLARFAFDPKDE 174
Score = 34.7 bits (78), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 144 YLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 199
Y L D KK+ G CI C C CP+ ++ Y GP ++ Q R+ D +DE
Sbjct: 124 YPDDLKDVKKIRG---CIDCLSCIAMCPARKYSN--YPGPTLMRQLARFAFDPKDE 174
>sp|Q57557|Y092_METJA Uncharacterized iron-sulfur protein MJ0092 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0092 PE=3 SV=1
Length = 489
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 227 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR----DKENIGNAQYLQSLDDRKKLDGL 282
I PL V++DL+ D +Y + I+ +L R ++ I +Y++ + K+L G
Sbjct: 78 IEPLRGFKVIRDLIVDREPYYKKLLGIKNYLIRKNYPEELEILIPKYVE---ENKELRG- 133
Query: 283 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 324
CI C C + CP+ + Y GP + Q R+ D RDE
Sbjct: 134 --CIDCLSCLSVCPAREVS--DYPGPTFMRQLARFAFDKRDE 171
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 148 LDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 199
+++ K+L G CI C C + CP+ + Y GP + Q R+ D RDE
Sbjct: 125 VEENKELRG---CIDCLSCLSVCPAREVS--DYPGPTFMRQLARFAFDKRDE 171
>sp|B2VCU8|MUTL_ERWT9 DNA mismatch repair protein MutL OS=Erwinia tasmaniensis (strain
DSM 17950 / Et1/99) GN=mutL PE=3 SV=1
Length = 611
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 177 GEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDANDKVSKIYPLP-HMYV 235
G + L P L+ R +D + +R ++L + + K DA+ + + PLP
Sbjct: 471 GSEGLRPQPLLIPVRLKLDKAERDAGNRCSELLNQMGIDLKFDAHHVMLRAVPLPLRQQN 530
Query: 236 VKDLVPDMNNFYAQYKSI 253
+++L+P+M + AQ++ +
Sbjct: 531 LQNLIPEMLGYLAQHQDV 548
>sp|P08066|DHSB_BACSU Succinate dehydrogenase iron-sulfur subunit OS=Bacillus subtilis
(strain 168) GN=sdhB PE=3 SV=3
Length = 253
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 213 SVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE-NIGNAQYLQ 271
S + ID ++ ++ P+ VV+DL D + + K ++ W+ D ++G +
Sbjct: 83 SCTALIDQLEQPIRLKPMKTFPVVRDLQVDRSRMFDSLKKVKAWIPIDGTYDLGPGPRMP 142
Query: 272 SLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQA 314
R+ L +C+ C C +CP+ + K++GPA + Q
Sbjct: 143 E-KRRQWAYELSKCMTCGVCLEACPNV-NSKSKFMGPAPMSQV 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,717,497
Number of Sequences: 539616
Number of extensions: 4962935
Number of successful extensions: 15413
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 15176
Number of HSP's gapped (non-prelim): 197
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)