Query psy5785
Match_columns 340
No_of_seqs 263 out of 1908
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 17:54:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3049|consensus 100.0 2.8E-51 6.2E-56 371.3 9.7 205 42-340 40-249 (288)
2 COG0479 FrdB Succinate dehydro 100.0 3.4E-46 7.5E-51 346.5 13.6 193 98-340 3-198 (234)
3 PLN00129 succinate dehydrogena 100.0 3.8E-42 8.3E-47 327.2 15.6 197 98-340 44-244 (276)
4 PRK13552 frdB fumarate reducta 100.0 8.8E-42 1.9E-46 319.5 14.9 196 98-340 5-206 (239)
5 PRK12575 succinate dehydrogena 100.0 3.7E-41 8E-46 314.5 14.6 195 98-340 5-201 (235)
6 PRK08640 sdhB succinate dehydr 100.0 4.7E-41 1E-45 316.3 14.4 201 98-340 6-209 (249)
7 COG0479 FrdB Succinate dehydro 100.0 1.9E-40 4E-45 308.2 9.7 155 47-212 1-195 (234)
8 PRK12386 fumarate reductase ir 100.0 2.3E-38 4.9E-43 298.2 13.4 189 98-340 5-200 (251)
9 PRK12385 fumarate reductase ir 100.0 3.6E-38 7.7E-43 296.0 14.3 195 98-340 7-203 (244)
10 PRK12577 succinate dehydrogena 100.0 1.4E-37 3.1E-42 303.2 14.9 193 98-340 3-209 (329)
11 PLN00129 succinate dehydrogena 100.0 6.6E-38 1.4E-42 298.2 10.7 156 44-206 39-235 (276)
12 PRK13552 frdB fumarate reducta 100.0 8.5E-37 1.9E-41 285.9 8.0 151 47-205 3-195 (239)
13 PRK05950 sdhB succinate dehydr 100.0 1.5E-35 3.3E-40 275.9 14.7 194 99-340 1-198 (232)
14 PRK12575 succinate dehydrogena 100.0 3.9E-36 8.4E-41 280.8 8.2 151 47-206 3-192 (235)
15 PRK12576 succinate dehydrogena 100.0 9.9E-35 2.2E-39 277.5 14.8 188 96-333 7-201 (279)
16 TIGR00384 dhsB succinate dehyd 100.0 6.5E-34 1.4E-38 262.9 13.7 191 102-340 1-194 (220)
17 PRK08640 sdhB succinate dehydr 100.0 6.6E-34 1.4E-38 267.9 11.2 166 46-221 3-224 (249)
18 PRK07570 succinate dehydrogena 100.0 2.3E-33 5E-38 264.2 11.8 173 98-314 3-185 (250)
19 PRK12386 fumarate reductase ir 100.0 2.4E-33 5.3E-38 264.1 8.4 140 47-199 3-186 (251)
20 PRK12385 fumarate reductase ir 100.0 1.2E-32 2.6E-37 258.6 9.0 151 47-206 5-194 (244)
21 KOG3049|consensus 100.0 2.9E-33 6.3E-38 254.1 2.9 134 77-215 94-249 (288)
22 PRK07570 succinate dehydrogena 100.0 2.3E-30 5.1E-35 243.9 7.8 131 47-185 1-182 (250)
23 PRK12577 succinate dehydrogena 100.0 1.3E-29 2.7E-34 247.4 10.7 164 47-221 1-224 (329)
24 PRK12576 succinate dehydrogena 100.0 1.2E-29 2.5E-34 242.6 8.5 151 45-205 5-198 (279)
25 PRK05950 sdhB succinate dehydr 100.0 1.7E-29 3.8E-34 235.2 8.3 147 50-205 1-188 (232)
26 TIGR00384 dhsB succinate dehyd 99.9 1.7E-27 3.7E-32 220.1 7.2 145 53-206 1-185 (220)
27 PRK06259 succinate dehydrogena 99.9 3.3E-23 7.1E-28 211.1 13.9 168 98-325 4-173 (486)
28 PRK06259 succinate dehydrogena 99.9 5E-22 1.1E-26 202.4 7.3 141 47-199 2-172 (486)
29 PF13085 Fer2_3: 2Fe-2S iron-s 99.8 1.8E-21 3.9E-26 162.5 6.7 104 99-248 1-110 (110)
30 PF13085 Fer2_3: 2Fe-2S iron-s 99.7 3.2E-18 7E-23 142.9 2.4 72 50-126 1-108 (110)
31 PRK11274 glcF glycolate oxidas 98.2 1.1E-06 2.4E-11 87.8 4.7 50 145-194 10-59 (407)
32 PF13183 Fer4_8: 4Fe-4S diclus 97.5 3.5E-05 7.6E-10 55.9 0.8 16 283-298 41-56 (57)
33 PRK11274 glcF glycolate oxidas 97.2 0.00036 7.9E-09 69.8 4.3 55 268-322 8-62 (407)
34 PRK11168 glpC sn-glycerol-3-ph 97.1 0.00045 9.8E-09 68.7 4.6 63 157-221 6-69 (396)
35 PF13534 Fer4_17: 4Fe-4S diclu 97.1 0.00016 3.5E-09 53.2 1.0 20 280-299 41-60 (61)
36 COG1139 Uncharacterized conser 97.0 0.00012 2.7E-09 73.8 -0.6 23 279-301 354-376 (459)
37 COG0247 GlpC Fe-S oxidoreducta 96.8 0.0012 2.7E-08 64.9 3.9 30 155-186 6-35 (388)
38 PF13187 Fer4_9: 4Fe-4S diclus 96.2 0.001 2.2E-08 47.9 -0.4 18 281-298 36-53 (55)
39 PRK13984 putative oxidoreducta 96.1 0.0025 5.4E-08 67.1 1.7 22 279-300 181-202 (604)
40 TIGR03379 glycerol3P_GlpC glyc 96.0 0.005 1.1E-07 61.5 3.2 28 157-185 4-31 (397)
41 TIGR00273 iron-sulfur cluster- 95.9 0.0077 1.7E-07 61.6 3.9 37 154-190 289-330 (432)
42 COG4656 RnfC Predicted NADH:ub 95.8 0.0033 7.1E-08 65.1 1.0 24 277-300 398-421 (529)
43 PRK15055 anaerobic sulfite red 95.5 0.0052 1.1E-07 61.1 1.2 20 281-300 305-324 (344)
44 PRK05352 Na(+)-translocating N 95.5 0.018 3.8E-07 59.3 4.9 29 280-318 410-440 (448)
45 PRK11168 glpC sn-glycerol-3-ph 95.3 0.011 2.4E-07 58.9 2.4 39 281-320 5-44 (396)
46 PRK05035 electron transport co 95.1 0.011 2.4E-07 63.8 2.0 20 281-300 407-426 (695)
47 PF12797 Fer4_2: 4Fe-4S bindin 95.0 0.005 1.1E-07 37.3 -0.5 18 280-297 5-22 (22)
48 TIGR00273 iron-sulfur cluster- 94.9 0.018 4E-07 58.9 2.8 37 277-313 287-328 (432)
49 COG3383 Uncharacterized anaero 94.5 0.0078 1.7E-07 64.8 -0.8 29 282-310 191-219 (978)
50 COG1150 HdrC Heterodisulfide r 94.5 0.006 1.3E-07 55.9 -1.6 87 156-249 37-127 (195)
51 PF12800 Fer4_4: 4Fe-4S bindin 94.3 0.016 3.5E-07 32.9 0.5 15 283-297 2-16 (17)
52 PF13484 Fer4_16: 4Fe-4S doubl 93.7 0.026 5.6E-07 42.1 0.8 18 159-176 1-18 (67)
53 PF12798 Fer4_3: 4Fe-4S bindin 93.7 0.016 3.5E-07 31.9 -0.2 14 285-298 1-14 (15)
54 TIGR03290 CoB_CoM_SS_C CoB--Co 93.6 0.1 2.2E-06 45.2 4.6 18 158-175 2-19 (144)
55 PRK08493 NADH dehydrogenase su 93.6 0.033 7.2E-07 61.2 1.7 22 283-304 204-225 (819)
56 PF12797 Fer4_2: 4Fe-4S bindin 93.5 0.023 5E-07 34.5 0.2 18 155-172 5-22 (22)
57 PF13183 Fer4_8: 4Fe-4S diclus 93.4 0.061 1.3E-06 38.7 2.3 17 282-298 2-18 (57)
58 COG1150 HdrC Heterodisulfide r 93.4 0.065 1.4E-06 49.2 3.0 34 281-317 37-70 (195)
59 PF12800 Fer4_4: 4Fe-4S bindin 93.0 0.059 1.3E-06 30.5 1.4 15 158-172 2-16 (17)
60 TIGR01945 rnfC electron transp 92.8 0.036 7.8E-07 56.6 0.5 19 155-173 360-378 (435)
61 PF12837 Fer4_6: 4Fe-4S bindin 92.8 0.029 6.4E-07 34.5 -0.1 18 281-298 5-22 (24)
62 TIGR03379 glycerol3P_GlpC glyc 92.6 0.049 1.1E-06 54.4 1.1 30 281-311 3-32 (397)
63 PF00037 Fer4: 4Fe-4S binding 92.0 0.04 8.6E-07 33.7 -0.3 19 281-299 4-22 (24)
64 PF13534 Fer4_17: 4Fe-4S diclu 90.8 0.12 2.6E-06 37.7 1.3 31 284-317 1-31 (61)
65 COG1139 Uncharacterized conser 89.7 0.12 2.7E-06 52.6 0.6 34 278-311 303-341 (459)
66 TIGR02910 sulfite_red_A sulfit 89.2 0.26 5.7E-06 48.9 2.6 20 281-300 299-318 (334)
67 TIGR03290 CoB_CoM_SS_C CoB--Co 88.9 0.16 3.4E-06 44.1 0.6 17 283-299 2-18 (144)
68 PF12837 Fer4_6: 4Fe-4S bindin 88.0 0.11 2.4E-06 32.0 -0.7 17 156-172 5-21 (24)
69 PF00037 Fer4: 4Fe-4S binding 87.3 0.16 3.4E-06 31.1 -0.3 17 157-173 5-21 (24)
70 PF13237 Fer4_10: 4Fe-4S diclu 86.8 0.17 3.6E-06 35.9 -0.4 18 155-172 4-21 (52)
71 PRK12809 putative oxidoreducta 86.5 0.26 5.7E-06 52.6 0.8 23 278-300 203-228 (639)
72 PF13237 Fer4_10: 4Fe-4S diclu 86.0 0.29 6.4E-06 34.6 0.6 18 280-297 4-21 (52)
73 PF13187 Fer4_9: 4Fe-4S diclus 85.5 0.23 4.9E-06 35.4 -0.2 17 284-300 1-17 (55)
74 TIGR00276 iron-sulfur cluster 85.2 0.42 9.1E-06 46.3 1.3 19 157-175 158-176 (282)
75 PLN00071 photosystem I subunit 84.1 0.28 6.1E-06 38.1 -0.3 28 283-310 46-73 (81)
76 PRK12769 putative oxidoreducta 82.8 0.96 2.1E-05 48.4 3.0 24 277-300 219-245 (654)
77 PF13746 Fer4_18: 4Fe-4S diclu 82.8 0.43 9.4E-06 36.5 0.3 21 279-299 46-66 (69)
78 PF13746 Fer4_18: 4Fe-4S diclu 81.6 0.61 1.3E-05 35.7 0.7 20 154-173 46-65 (69)
79 PRK02651 photosystem I subunit 80.3 0.36 7.7E-06 37.3 -1.0 28 283-310 46-73 (81)
80 COG4656 RnfC Predicted NADH:ub 80.3 0.53 1.1E-05 49.2 -0.1 24 150-173 396-419 (529)
81 PF12838 Fer4_7: 4Fe-4S diclus 80.2 0.6 1.3E-05 33.1 0.2 17 282-298 35-51 (52)
82 PF12838 Fer4_7: 4Fe-4S diclus 79.4 0.45 9.7E-06 33.8 -0.7 17 284-300 1-17 (52)
83 TIGR03048 PS_I_psaC photosyste 78.6 0.49 1.1E-05 36.7 -0.7 28 283-310 45-72 (80)
84 COG1143 NuoI Formate hydrogenl 78.5 0.67 1.4E-05 41.9 0.0 19 281-299 93-111 (172)
85 PRK08318 dihydropyrimidine deh 78.2 0.42 9.1E-06 48.4 -1.5 20 231-250 288-307 (420)
86 KOG3256|consensus 78.2 0.62 1.4E-05 42.1 -0.3 19 281-299 148-166 (212)
87 CHL00065 psaC photosystem I su 77.9 0.49 1.1E-05 36.8 -0.9 27 283-309 46-72 (81)
88 PRK07118 ferredoxin; Validated 77.9 0.5 1.1E-05 45.7 -1.0 19 157-175 138-156 (280)
89 COG0247 GlpC Fe-S oxidoreducta 77.9 1.6 3.4E-05 43.0 2.4 40 279-320 5-44 (388)
90 COG1145 NapF Ferredoxin [Energ 77.7 0.76 1.6E-05 36.0 0.1 18 282-299 28-45 (99)
91 COG1145 NapF Ferredoxin [Energ 77.0 1 2.2E-05 35.3 0.7 18 282-299 62-79 (99)
92 COG1146 Ferredoxin [Energy pro 76.9 0.81 1.8E-05 34.4 0.1 18 281-298 39-56 (68)
93 PF14697 Fer4_21: 4Fe-4S diclu 76.8 1.1 2.3E-05 33.3 0.7 16 282-297 38-53 (59)
94 PF14697 Fer4_21: 4Fe-4S diclu 74.9 0.96 2.1E-05 33.5 0.0 17 282-298 5-21 (59)
95 TIGR02176 pyruv_ox_red pyruvat 74.3 1.1 2.3E-05 51.6 0.2 31 156-187 681-711 (1165)
96 TIGR01936 nqrA NADH:ubiquinone 74.1 2 4.2E-05 44.5 2.0 30 280-319 409-440 (447)
97 PRK09626 oorD 2-oxoglutarate-a 72.2 1.5 3.2E-05 35.8 0.6 21 153-173 11-31 (103)
98 PLN00071 photosystem I subunit 72.1 1.2 2.7E-05 34.4 0.0 28 158-185 46-73 (81)
99 PF13484 Fer4_16: 4Fe-4S doubl 70.1 1 2.2E-05 33.4 -0.8 17 284-300 1-17 (67)
100 PRK05352 Na(+)-translocating N 69.8 3 6.6E-05 43.0 2.3 32 154-195 409-442 (448)
101 TIGR00403 ndhI NADH-plastoquin 69.1 1.7 3.6E-05 39.5 0.2 18 282-299 101-118 (183)
102 TIGR00403 ndhI NADH-plastoquin 68.6 1.9 4.1E-05 39.1 0.4 19 281-299 60-78 (183)
103 TIGR00397 mauM_napG MauM/NapG 68.2 1.8 3.8E-05 40.2 0.2 24 152-175 47-70 (213)
104 TIGR02936 fdxN_nitrog ferredox 68.1 1.8 3.8E-05 34.0 0.1 20 280-299 18-37 (91)
105 COG1146 Ferredoxin [Energy pro 67.7 2.1 4.5E-05 32.2 0.5 21 154-174 37-57 (68)
106 CHL00065 psaC photosystem I su 67.2 1.5 3.2E-05 34.1 -0.5 26 158-183 46-71 (81)
107 TIGR01971 NuoI NADH-quinone ox 66.3 1.9 4.2E-05 35.8 0.0 19 282-300 81-99 (122)
108 PRK05035 electron transport co 66.0 2.6 5.5E-05 45.9 0.9 19 155-173 406-424 (695)
109 CHL00014 ndhI NADH dehydrogena 65.9 2.1 4.5E-05 38.2 0.1 18 281-298 57-74 (167)
110 COG1141 Fer Ferredoxin [Energy 64.9 2.4 5.1E-05 32.8 0.3 18 156-173 6-23 (68)
111 PRK05888 NADH dehydrogenase su 64.8 2 4.4E-05 37.9 -0.1 20 280-299 55-74 (164)
112 PRK02651 photosystem I subunit 64.8 2 4.4E-05 33.1 -0.1 20 280-299 6-25 (81)
113 PRK15055 anaerobic sulfite red 63.7 2.8 6.1E-05 41.9 0.6 17 281-297 224-240 (344)
114 PRK09626 oorD 2-oxoglutarate-a 63.7 2.3 4.9E-05 34.7 -0.1 19 281-299 14-32 (103)
115 PRK08222 hydrogenase 4 subunit 63.4 2.4 5.1E-05 38.4 0.0 19 281-299 36-54 (181)
116 TIGR02936 fdxN_nitrog ferredox 63.4 2.2 4.8E-05 33.5 -0.1 19 281-299 68-86 (91)
117 CHL00014 ndhI NADH dehydrogena 63.0 2.5 5.4E-05 37.6 0.1 18 282-299 98-115 (167)
118 PRK15449 ferredoxin-like prote 62.7 2.8 6.1E-05 34.4 0.3 20 154-173 57-76 (95)
119 PRK10194 ferredoxin-type prote 62.7 1.5 3.2E-05 38.7 -1.4 21 280-300 31-51 (163)
120 TIGR03048 PS_I_psaC photosyste 62.5 2.1 4.5E-05 33.1 -0.4 28 158-185 45-72 (80)
121 PF13459 Fer4_15: 4Fe-4S singl 62.1 2.9 6.3E-05 31.1 0.3 17 157-173 5-21 (65)
122 PRK15033 tricarballylate utili 62.0 6.5 0.00014 40.0 2.8 21 281-301 65-85 (389)
123 PRK08348 NADH-plastoquinone ox 60.2 2.8 6.1E-05 35.0 -0.1 20 280-299 39-58 (120)
124 PRK10194 ferredoxin-type prote 59.8 2.2 4.8E-05 37.6 -0.8 24 152-175 28-51 (163)
125 PRK15449 ferredoxin-like prote 58.6 3.3 7.2E-05 34.0 0.1 19 281-299 59-77 (95)
126 TIGR01936 nqrA NADH:ubiquinone 58.3 5.6 0.00012 41.1 1.7 32 154-195 408-441 (447)
127 COG1453 Predicted oxidoreducta 58.2 3.9 8.5E-05 41.3 0.5 19 155-173 348-366 (391)
128 TIGR02484 CitB CitB domain pro 58.2 13 0.00029 37.6 4.2 41 274-316 41-81 (372)
129 PRK06273 ferredoxin; Provision 58.0 3.5 7.5E-05 37.0 0.1 22 154-175 45-66 (165)
130 TIGR01945 rnfC electron transp 58.0 3.4 7.3E-05 42.3 0.0 20 280-299 360-379 (435)
131 PRK05888 NADH dehydrogenase su 57.8 3.8 8.2E-05 36.2 0.3 18 282-299 96-113 (164)
132 KOG3256|consensus 57.7 3.5 7.7E-05 37.3 0.1 19 157-175 149-167 (212)
133 COG1142 HycB Fe-S-cluster-cont 57.2 4.2 9.1E-05 36.6 0.5 25 281-305 80-104 (165)
134 TIGR00397 mauM_napG MauM/NapG 56.6 2.1 4.6E-05 39.7 -1.5 19 282-300 52-70 (213)
135 COG1143 NuoI Formate hydrogenl 56.2 4.5 9.8E-05 36.6 0.5 19 157-175 94-112 (172)
136 TIGR02910 sulfite_red_A sulfit 56.1 4.6 0.0001 40.2 0.6 17 282-298 219-235 (334)
137 PRK09326 F420H2 dehydrogenase 55.9 4.9 0.00011 39.8 0.8 20 154-173 8-27 (341)
138 COG3383 Uncharacterized anaero 55.5 3.7 8E-05 45.1 -0.2 30 156-185 190-219 (978)
139 TIGR01971 NuoI NADH-quinone ox 55.4 3.9 8.4E-05 33.9 -0.0 18 282-299 42-59 (122)
140 PRK14028 pyruvate ferredoxin o 55.3 4.4 9.4E-05 39.4 0.3 21 279-299 243-263 (312)
141 PF13370 Fer4_13: 4Fe-4S singl 55.1 3.2 7E-05 30.5 -0.5 17 157-173 3-19 (58)
142 PRK08348 NADH-plastoquinone ox 54.9 3.9 8.4E-05 34.2 -0.1 17 283-299 73-89 (120)
143 PF13370 Fer4_13: 4Fe-4S singl 54.8 3.5 7.7E-05 30.3 -0.3 19 282-300 3-21 (58)
144 PRK09476 napG quinol dehydroge 54.7 4 8.7E-05 38.9 -0.0 24 152-175 53-76 (254)
145 TIGR02494 PFLE_PFLC glycyl-rad 54.5 4.3 9.4E-05 38.7 0.1 19 281-299 46-64 (295)
146 COG1453 Predicted oxidoreducta 54.0 6 0.00013 40.0 1.1 20 282-301 350-369 (391)
147 PRK09624 porD pyuvate ferredox 53.4 4.9 0.00011 33.1 0.3 17 283-299 81-97 (105)
148 TIGR00314 cdhA CO dehydrogenas 53.3 5.7 0.00012 43.8 0.8 22 277-298 393-414 (784)
149 PRK06991 ferredoxin; Provision 52.8 5.4 0.00012 38.5 0.5 16 283-298 115-130 (270)
150 COG1142 HycB Fe-S-cluster-cont 52.8 5.3 0.00012 36.0 0.4 22 154-175 78-99 (165)
151 PRK12387 formate hydrogenlyase 52.5 4.7 0.0001 36.2 0.0 19 281-299 36-54 (180)
152 PRK09625 porD pyruvate flavodo 52.4 4.2 9E-05 35.0 -0.3 19 154-172 55-73 (133)
153 PF13459 Fer4_15: 4Fe-4S singl 51.8 5 0.00011 29.8 0.1 19 282-300 5-23 (65)
154 PRK06273 ferredoxin; Provision 51.8 4.5 9.9E-05 36.2 -0.2 19 281-299 47-65 (165)
155 cd01916 ACS_1 Acetyl-CoA synth 51.4 6.3 0.00014 43.2 0.8 20 279-298 361-380 (731)
156 PRK09477 napH quinol dehydroge 51.2 5 0.00011 38.4 -0.0 18 282-299 241-258 (271)
157 TIGR01660 narH nitrate reducta 50.6 7.4 0.00016 40.5 1.1 26 277-302 8-33 (492)
158 PRK08222 hydrogenase 4 subunit 50.6 6 0.00013 35.8 0.4 19 155-173 35-53 (181)
159 PRK09326 F420H2 dehydrogenase 49.7 3.7 7.9E-05 40.6 -1.2 20 279-298 8-27 (341)
160 COG1141 Fer Ferredoxin [Energy 49.5 6.5 0.00014 30.3 0.4 18 282-299 7-24 (68)
161 PRK00941 acetyl-CoA decarbonyl 48.7 7.8 0.00017 42.7 1.0 21 278-298 399-419 (781)
162 TIGR02179 PorD_KorD 2-oxoacid: 48.5 5.4 0.00012 30.4 -0.2 19 281-299 23-41 (78)
163 PRK14028 pyruvate ferredoxin o 48.2 7.9 0.00017 37.6 0.9 22 154-175 243-264 (312)
164 PRK09625 porD pyruvate flavodo 48.1 6.1 0.00013 34.0 0.0 20 280-299 56-75 (133)
165 PRK12387 formate hydrogenlyase 46.9 7 0.00015 35.0 0.3 19 155-173 35-53 (180)
166 TIGR02512 Fe_only_hydrog hydro 46.8 6.4 0.00014 39.4 -0.0 20 281-300 5-24 (374)
167 PRK09476 napG quinol dehydroge 45.8 4.6 0.0001 38.6 -1.2 19 282-300 58-76 (254)
168 TIGR02163 napH_ ferredoxin-typ 45.7 6.4 0.00014 37.4 -0.2 17 283-299 234-250 (255)
169 PRK09624 porD pyuvate ferredox 45.5 7.2 0.00016 32.1 0.1 19 281-299 49-67 (105)
170 TIGR00402 napF ferredoxin-type 45.2 7.2 0.00016 31.7 0.0 20 154-173 30-49 (101)
171 TIGR02494 PFLE_PFLC glycyl-rad 44.5 8.4 0.00018 36.7 0.4 18 282-299 81-98 (295)
172 TIGR00402 napF ferredoxin-type 43.5 8.1 0.00018 31.4 0.1 19 282-300 65-83 (101)
173 TIGR00314 cdhA CO dehydrogenas 43.4 10 0.00022 41.9 0.8 22 152-173 393-414 (784)
174 PRK09623 vorD 2-ketoisovalerat 43.0 8.8 0.00019 31.5 0.3 19 154-172 47-65 (105)
175 TIGR01660 narH nitrate reducta 42.9 10 0.00023 39.4 0.8 24 154-177 10-33 (492)
176 COG1144 Pyruvate:ferredoxin ox 42.3 5.4 0.00012 32.5 -1.1 19 280-298 63-81 (91)
177 PRK09853 putative selenate red 42.0 9.5 0.0002 43.4 0.4 17 157-173 925-941 (1019)
178 PRK06991 ferredoxin; Provision 41.9 7.5 0.00016 37.6 -0.4 18 282-299 84-101 (270)
179 TIGR02912 sulfite_red_C sulfit 41.3 8.2 0.00018 37.6 -0.2 17 282-298 200-216 (314)
180 COG1148 HdrA Heterodisulfide r 41.3 11 0.00024 39.7 0.7 22 279-301 221-242 (622)
181 PRK13984 putative oxidoreducta 40.9 10 0.00022 40.1 0.4 20 154-173 181-200 (604)
182 PRK09853 putative selenate red 40.8 9.5 0.00021 43.4 0.1 21 279-299 922-942 (1019)
183 cd01916 ACS_1 Acetyl-CoA synth 40.7 11 0.00025 41.3 0.7 22 152-173 359-380 (731)
184 PRK09623 vorD 2-ketoisovalerat 40.4 9.7 0.00021 31.2 0.1 20 279-298 47-66 (105)
185 PRK00941 acetyl-CoA decarbonyl 40.2 11 0.00025 41.5 0.6 22 152-173 398-419 (781)
186 COG1144 Pyruvate:ferredoxin ox 40.1 11 0.00024 30.8 0.4 16 159-174 67-82 (91)
187 PRK09477 napH quinol dehydroge 39.3 12 0.00027 35.7 0.7 19 281-299 206-224 (271)
188 TIGR02745 ccoG_rdxA_fixG cytoc 38.7 10 0.00023 39.1 0.0 16 283-298 255-270 (434)
189 PRK05113 electron transport co 38.6 8.9 0.00019 35.0 -0.4 17 283-299 144-160 (191)
190 PRK05113 electron transport co 38.6 11 0.00023 34.5 0.1 19 281-299 112-130 (191)
191 TIGR02060 aprB adenosine phosp 38.2 10 0.00022 32.8 -0.1 17 283-299 45-61 (132)
192 PRK07569 bidirectional hydroge 38.0 8.7 0.00019 35.9 -0.6 17 281-297 144-160 (234)
193 TIGR02176 pyruv_ox_red pyruvat 37.9 12 0.00025 43.4 0.2 18 281-298 737-754 (1165)
194 PRK12814 putative NADPH-depend 37.2 8.9 0.00019 41.2 -0.8 20 281-300 614-633 (652)
195 PF13247 Fer4_11: 4Fe-4S diclu 37.1 8.7 0.00019 31.5 -0.7 20 281-300 38-57 (98)
196 TIGR01944 rnfB electron transp 36.8 11 0.00023 33.5 -0.2 19 154-172 109-127 (165)
197 PRK07569 bidirectional hydroge 36.7 11 0.00023 35.3 -0.3 19 282-300 189-207 (234)
198 TIGR02163 napH_ ferredoxin-typ 36.2 14 0.0003 35.1 0.4 17 282-298 200-216 (255)
199 PTZ00305 NADH:ubiquinone oxido 36.0 8.7 0.00019 37.7 -1.0 18 282-299 211-228 (297)
200 PRK08318 dihydropyrimidine deh 35.3 14 0.0003 37.4 0.3 17 281-297 375-391 (420)
201 TIGR02512 Fe_only_hydrog hydro 34.8 13 0.00029 37.2 0.1 19 282-300 49-67 (374)
202 COG4231 Indolepyruvate ferredo 34.8 15 0.00033 39.5 0.5 21 155-175 605-625 (640)
203 TIGR03287 methan_mark_16 putat 34.5 14 0.0003 37.7 0.2 19 281-299 328-346 (391)
204 PRK08493 NADH dehydrogenase su 34.4 17 0.00037 40.4 0.9 20 157-176 203-222 (819)
205 COG1140 NarY Nitrate reductase 34.4 18 0.0004 36.9 1.0 27 276-302 7-33 (513)
206 PRK08764 ferredoxin; Provision 33.9 15 0.00032 31.6 0.2 17 283-299 115-131 (135)
207 TIGR01944 rnfB electron transp 33.8 13 0.00027 33.1 -0.2 18 281-298 111-128 (165)
208 TIGR02912 sulfite_red_C sulfit 33.2 15 0.00032 35.8 0.2 21 155-175 198-218 (314)
209 TIGR02745 ccoG_rdxA_fixG cytoc 33.1 14 0.0003 38.1 -0.1 18 282-299 230-247 (434)
210 PRK14993 tetrathionate reducta 33.1 11 0.00024 35.8 -0.8 21 279-299 47-67 (244)
211 PF13247 Fer4_11: 4Fe-4S diclu 33.0 9.3 0.0002 31.3 -1.1 22 154-175 36-57 (98)
212 TIGR02484 CitB CitB domain pro 32.6 25 0.00054 35.7 1.6 20 281-300 12-31 (372)
213 PRK08764 ferredoxin; Provision 32.5 14 0.00031 31.6 -0.1 17 283-299 85-101 (135)
214 COG1149 MinD superfamily P-loo 32.5 16 0.00035 35.6 0.3 19 281-299 67-85 (284)
215 TIGR02066 dsrB sulfite reducta 32.3 15 0.00032 36.6 0.0 21 279-299 210-230 (341)
216 PRK09898 hypothetical protein; 32.3 14 0.0003 34.0 -0.3 18 282-299 180-197 (208)
217 COG0437 HybA Fe-S-cluster-cont 32.2 15 0.00033 34.2 -0.0 17 157-173 99-115 (203)
218 PF14157 YmzC: YmzC-like prote 32.0 26 0.00056 26.7 1.2 13 48-60 38-50 (63)
219 TIGR02700 flavo_MJ0208 archaeo 32.0 16 0.00035 34.2 0.1 19 281-299 146-164 (234)
220 TIGR02066 dsrB sulfite reducta 31.8 18 0.00039 36.1 0.5 22 154-175 210-231 (341)
221 COG0348 NapH Polyferredoxin [E 31.5 17 0.00036 36.8 0.2 16 159-174 246-261 (386)
222 TIGR03224 benzo_boxA benzoyl-C 31.5 19 0.00041 36.6 0.6 15 158-172 10-24 (411)
223 TIGR03478 DMSO_red_II_bet DMSO 31.1 19 0.00042 35.7 0.5 24 279-302 7-30 (321)
224 TIGR02700 flavo_MJ0208 archaeo 31.0 19 0.00041 33.7 0.5 17 283-299 177-193 (234)
225 TIGR03149 cyt_nit_nrfC cytochr 30.9 19 0.00042 33.5 0.5 21 155-175 89-111 (225)
226 TIGR03224 benzo_boxA benzoyl-C 30.7 14 0.00031 37.5 -0.5 17 282-298 38-54 (411)
227 COG2440 FixX Ferredoxin-like p 30.7 19 0.00041 29.8 0.3 18 155-172 62-79 (99)
228 COG1245 Predicted ATPase, RNas 29.1 21 0.00045 37.6 0.4 19 157-175 49-67 (591)
229 TIGR03149 cyt_nit_nrfC cytochr 29.1 21 0.00045 33.3 0.4 18 156-173 44-61 (225)
230 COG1152 CdhA CO dehydrogenase/ 29.0 31 0.00066 37.2 1.6 17 282-298 437-453 (772)
231 PRK13409 putative ATPase RIL; 28.6 24 0.00052 37.6 0.8 17 159-175 50-66 (590)
232 PRK10882 hydrogenase 2 protein 28.5 17 0.00036 36.2 -0.4 26 274-299 36-61 (328)
233 COG2440 FixX Ferredoxin-like p 28.2 19 0.00041 29.8 -0.1 18 281-298 63-80 (99)
234 COG1600 Uncharacterized Fe-S p 28.1 44 0.00094 33.5 2.4 20 158-177 185-204 (337)
235 PRK09898 hypothetical protein; 28.0 24 0.00052 32.3 0.6 17 283-299 154-170 (208)
236 COG1035 FrhB Coenzyme F420-red 27.9 23 0.00049 35.4 0.4 14 159-172 6-19 (332)
237 COG1035 FrhB Coenzyme F420-red 27.9 21 0.00045 35.7 0.1 17 282-298 4-20 (332)
238 COG1152 CdhA CO dehydrogenase/ 27.6 29 0.00063 37.3 1.1 21 280-300 397-417 (772)
239 TIGR03336 IOR_alpha indolepyru 27.5 19 0.00041 38.3 -0.2 14 284-297 579-592 (595)
240 TIGR03193 4hydroxCoAred 4-hydr 27.4 19 0.00042 31.8 -0.1 40 157-232 35-78 (148)
241 COG0348 NapH Polyferredoxin [E 26.8 30 0.00065 35.0 1.1 17 284-300 246-262 (386)
242 PRK13795 hypothetical protein; 26.8 23 0.00049 38.2 0.2 39 124-169 379-419 (636)
243 TIGR01973 NuoG NADH-quinone ox 26.2 16 0.00036 38.7 -1.0 17 281-297 140-156 (603)
244 PRK10330 formate dehydrogenase 26.1 15 0.00032 32.8 -1.1 18 281-298 8-25 (181)
245 TIGR02060 aprB adenosine phosp 25.9 24 0.00051 30.5 0.1 19 281-299 6-29 (132)
246 COG0437 HybA Fe-S-cluster-cont 25.4 22 0.00048 33.1 -0.2 24 151-174 11-34 (203)
247 TIGR01582 FDH-beta formate deh 25.4 27 0.00058 34.0 0.4 19 281-299 122-140 (283)
248 TIGR02951 DMSO_dmsB DMSO reduc 25.1 28 0.00061 30.4 0.5 19 281-299 93-111 (161)
249 PRK09129 NADH dehydrogenase su 24.8 19 0.0004 39.5 -0.9 17 281-297 142-158 (776)
250 COG4231 Indolepyruvate ferredo 24.7 21 0.00046 38.5 -0.5 22 279-300 604-625 (640)
251 PRK09130 NADH dehydrogenase su 24.0 37 0.0008 37.0 1.2 78 158-246 185-263 (687)
252 TIGR03315 Se_ygfK putative sel 24.0 28 0.00062 39.7 0.3 16 284-299 922-937 (1012)
253 COG1140 NarY Nitrate reductase 23.7 32 0.00069 35.2 0.6 24 154-177 10-33 (513)
254 COG1941 FrhG Coenzyme F420-red 23.7 36 0.00078 32.6 0.9 23 153-175 185-207 (247)
255 TIGR02486 RDH reductive dehalo 23.5 26 0.00055 34.6 -0.1 19 158-176 205-223 (314)
256 TIGR03287 methan_mark_16 putat 23.5 26 0.00056 35.8 -0.1 17 157-173 329-345 (391)
257 PRK07860 NADH dehydrogenase su 23.3 33 0.00073 37.9 0.7 21 80-100 45-68 (797)
258 PRK12771 putative glutamate sy 23.3 26 0.00056 36.8 -0.1 18 281-298 539-556 (564)
259 TIGR03315 Se_ygfK putative sel 23.0 29 0.00063 39.6 0.2 15 159-173 922-936 (1012)
260 TIGR02951 DMSO_dmsB DMSO reduc 22.8 15 0.00033 32.1 -1.7 19 280-298 6-24 (161)
261 TIGR03336 IOR_alpha indolepyru 22.8 25 0.00054 37.5 -0.4 15 159-173 579-593 (595)
262 TIGR01318 gltD_gamma_fam gluta 22.7 20 0.00043 36.8 -1.1 24 277-300 34-59 (467)
263 COG1148 HdrA Heterodisulfide r 22.6 35 0.00077 36.1 0.7 17 157-173 270-286 (622)
264 PRK09130 NADH dehydrogenase su 22.6 33 0.00072 37.3 0.5 19 285-303 187-205 (687)
265 PRK10882 hydrogenase 2 protein 22.6 32 0.0007 34.2 0.4 19 282-300 142-160 (328)
266 cd07030 RNAP_D D subunit of Ar 22.5 31 0.00068 32.6 0.3 16 283-298 199-214 (259)
267 TIGR03294 FrhG coenzyme F420 h 22.3 28 0.00061 32.6 -0.1 17 283-299 203-219 (228)
268 TIGR01973 NuoG NADH-quinone ox 22.2 35 0.00076 36.2 0.6 24 77-100 36-63 (603)
269 PRK09129 NADH dehydrogenase su 22.1 37 0.00079 37.3 0.7 19 285-303 186-204 (776)
270 PRK10330 formate dehydrogenase 21.7 37 0.00081 30.2 0.6 19 281-299 85-103 (181)
271 PRK15033 tricarballylate utili 21.3 54 0.0012 33.5 1.7 20 279-298 29-48 (389)
272 COG2768 Uncharacterized Fe-S c 21.3 71 0.0015 31.9 2.4 20 281-300 219-238 (354)
273 PRK08166 NADH dehydrogenase su 21.3 39 0.00084 37.5 0.7 22 284-305 190-211 (847)
274 COG2221 DsrA Dissimilatory sul 21.1 35 0.00075 33.9 0.2 19 281-299 199-217 (317)
275 PRK14993 tetrathionate reducta 20.8 34 0.00074 32.4 0.1 18 156-173 96-115 (244)
276 TIGR03294 FrhG coenzyme F420 h 20.6 32 0.0007 32.2 -0.1 20 280-299 171-190 (228)
277 PRK13795 hypothetical protein; 20.2 33 0.00071 37.0 -0.1 20 154-173 577-596 (636)
278 TIGR02486 RDH reductive dehalo 20.1 34 0.00073 33.8 -0.1 19 282-300 204-222 (314)
279 TIGR03478 DMSO_red_II_bet DMSO 20.1 44 0.00095 33.3 0.7 24 154-177 7-30 (321)
No 1
>KOG3049|consensus
Probab=100.00 E-value=2.8e-51 Score=371.25 Aligned_cols=205 Identities=61% Similarity=1.117 Sum_probs=186.1
Q ss_pred CCCCCcceEEEEEecCCCCCCCCCceeeeccccchhhhhhhcccccccccCCcccceeEEeeccCCCCCCCCCceEEEEE
Q psy5785 42 AEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKV 121 (340)
Q Consensus 42 ~~~~~~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~lafr~sCrecam~iNG~p~ac~tl~I~r~~p~lp~~~PvikDLvV 121 (340)
+.+.++.+||+||||||+.||+||++|+|+||++ .
T Consensus 40 ~~~~~rlKtFeIYRwnPd~pg~kP~~Q~y~vDL~--------------------~------------------------- 74 (288)
T KOG3049|consen 40 AATGPRLKTFEIYRWNPDNPGDKPHLQTYEVDLN--------------------D------------------------- 74 (288)
T ss_pred cccCCccceEEEEecCCCCCCCCccceeeeecHH--------------------h-------------------------
Confidence 3456799999999999999999999999998831 1
Q ss_pred ecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcch
Q psy5785 122 DLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 199 (340)
Q Consensus 122 D~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~ 199 (340)
.++.|+| +|.+|+.+ .|.+ +.|+++| +.||+|.+. +||
T Consensus 75 ----CGpMvLD--ALiKIKnE-----~Dpt--LTFRRSCREGICGSCAMN-----I~G---------------------- 114 (288)
T KOG3049|consen 75 ----CGPMVLD--ALIKIKNE-----MDPT--LTFRRSCREGICGSCAMN-----ING---------------------- 114 (288)
T ss_pred ----cchHHHH--HHHHhhcc-----cCCc--eehhhhhhccccccceec-----cCC----------------------
Confidence 1346777 88888876 7777 9999999 999999988 988
Q ss_pred hHHHhhhccCCCccccccccCC-CCceEEEeCCCCceeeecccChhHHHHHHHhcCCcccCCCC--CCCcccccCCHHHH
Q psy5785 200 KTADRLNQLKDPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE--NIGNAQYLQSLDDR 276 (340)
Q Consensus 200 ~~~~Rl~~l~~~~~c~~~~~~~-~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~--~~~~~~~~~~~~~~ 276 (340)
-+ .++|..+|+.+ .+..+|.||+|+.||||||+||+.||+||++|+|||+.++. ..++.|++||.+|+
T Consensus 115 -----~N----tLACi~kId~n~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR 185 (288)
T KOG3049|consen 115 -----TN----TLACICKIDQNESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDR 185 (288)
T ss_pred -----Cc----eeEEEEeeccCCcccceeecCcceeeehhhcccHHHHHHHHhcccHHhhcCCcccCccHHHHHHhHHHH
Confidence 34 89999999986 78899999999999999999999999999999999999876 33568999999999
Q ss_pred HHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCC
Q psy5785 277 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340 (340)
Q Consensus 277 ~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l~~~~~~~ 340 (340)
++++.+..||||.||+.+||++|+|.+.|+||++|.+||||+.|+||+.+++||+.|.|+|++|
T Consensus 186 ~kLDGlYECILCACCsTSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~sly 249 (288)
T KOG3049|consen 186 AKLDGLYECILCACCSTSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPFSLY 249 (288)
T ss_pred HhhccHHHHHHHHHhcCCCcccccCcccccCHHHHHHHHhhhhcchhHHHHHHHHHhcCchhhe
Confidence 9999999999999999999999999999999999999999999999999999999999999987
No 2
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=3.4e-46 Score=346.46 Aligned_cols=193 Identities=43% Similarity=0.770 Sum_probs=174.9
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
.+++|.||+|+. + .||+++|.||..+ +++|++ +|.+|+++ +++. +.++++| ..||+|.+. +
T Consensus 3 ~~~~i~R~~p~~-~-~p~~~~yev~~~~-~~~vLd--aL~~Ik~e-----~d~~--Lsfr~sCR~gICGSCam~-----I 65 (234)
T COG0479 3 LKFKIYRYNPDD-D-KPYWQTYEVPYDE-GMTVLD--ALLYIKEE-----QDPT--LSFRRSCREGICGSCAMN-----I 65 (234)
T ss_pred EEEEEEEECCCC-C-CcceEEEEecCCC-CCcHHH--HHHHHHHh-----cCCc--cchhhhccCCcCCcceeE-----E
Confidence 578999999864 3 8999999999987 789999 99999976 6666 9999999 679999999 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC-CCceEEEeCCCCceeeecccChhHHHHHHHhcC
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQ 254 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~-~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~ 254 (340)
|| .. .++|.+.+.+. .+.++|+||++||||||||||+++||++|++++
T Consensus 66 NG---------------------------~p----rLAC~t~~~~~~~~~i~iePL~~fpVIkDLVVD~~~f~~~~~~ik 114 (234)
T COG0479 66 NG---------------------------KP----RLACKTLMKDLEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIK 114 (234)
T ss_pred CC---------------------------cc----ccchhchhhhccCCceEEEECCCCCceeeeeeccHHHHHhhhccc
Confidence 99 45 78999999987 447999999999999999999999999999999
Q ss_pred CcccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhhc
Q psy5785 255 PWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334 (340)
Q Consensus 255 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l~ 334 (340)
||++.+.+..+.. ++|+|+++++++.++.||+||+|+++||+.++++ +|+||++|++||||+.||||+.+++|++.+.
T Consensus 115 p~~~~~~~~~~~~-~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~~~~~~-~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~ 192 (234)
T COG0479 115 PYLIRDDEPDPGE-RLQSPEEREKLDELSECILCGCCTAACPSIWWNP-DFLGPAALRQAYRFLADSRDEGTAERLKILE 192 (234)
T ss_pred cceecCCcCCCcc-ccCCHHHHHHHHhhhhccccchhhhhCCcccccc-CCcCHHHHHHHHHHhcCCcccchHHHHHhcc
Confidence 9999964432223 9999999999999999999999999999999885 8999999999999999999999999999999
Q ss_pred CCCCCC
Q psy5785 335 DPFSVY 340 (340)
Q Consensus 335 ~~~~~~ 340 (340)
+++|||
T Consensus 193 ~~~gv~ 198 (234)
T COG0479 193 DPDGVW 198 (234)
T ss_pred CCCCEe
Confidence 999987
No 3
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=100.00 E-value=3.8e-42 Score=327.20 Aligned_cols=197 Identities=54% Similarity=1.002 Sum_probs=174.0
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
++++|+||+|+. +..|++++|.|+..+-+++|++ +|.+|+++ +|.. +.++++| ..||+|.+. +
T Consensus 44 ~~~~i~R~~p~~-~~~~~~~~y~v~~~~~~~tVLd--~L~~Ik~~-----~D~s--Lsfr~sCr~giCGsCam~-----I 108 (276)
T PLN00129 44 KEFQIYRWNPDN-PGKPHLQSYKVDLNDCGPMVLD--VLIKIKNE-----QDPS--LTFRRSCREGICGSCAMN-----I 108 (276)
T ss_pred EEEEEEeeCCCC-CCCceeEEEEeCCCCCCchHHH--HHHHHHHc-----CCCC--eEEeccCCCCCCCCCeeE-----E
Confidence 568899999864 4579999999998743468999 99999876 6666 9999999 999999999 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCCC-CceEEEeCCCCceeeecccChhHHHHHHHhcC
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQ 254 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~~-~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~ 254 (340)
|| .. .++|.+++.++. +.++|+||++||||||||||+++||++|++++
T Consensus 109 NG---------------------------~p----~LAC~t~v~~~~~~~i~iePl~~fpVirDLvVD~~~f~~klk~v~ 157 (276)
T PLN00129 109 DG---------------------------KN----TLACLTKIDRDESGPTTITPLPHMFVIKDLVVDMTNFYQQYKSIE 157 (276)
T ss_pred CC---------------------------cc----cccccccHhhcCCCcEEEEECCCCCeeeecccccHHHHHHHHhcc
Confidence 99 45 889999998874 67999999999999999999999999999999
Q ss_pred CcccCCCCCCCc-ccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhh
Q psy5785 255 PWLQRDKENIGN-AQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333 (340)
Q Consensus 255 p~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l 333 (340)
|||+.++..... .+++|+|+++++++.+.+||+||+|+++||++..+.++|+||++++++|||+.|+||+..++||+.+
T Consensus 158 p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~~~~erl~~l 237 (276)
T PLN00129 158 PWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLEAL 237 (276)
T ss_pred ccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCcccCcccccHHHHHHHHHhcCCccccchHHHHHHH
Confidence 999976542222 4789999999999999999999999999999876666799999999999999999999999999988
Q ss_pred cCCCCCC
Q psy5785 334 KDPFSVY 340 (340)
Q Consensus 334 ~~~~~~~ 340 (340)
.+.+|+|
T Consensus 238 ~~~~gl~ 244 (276)
T PLN00129 238 DDEFKLY 244 (276)
T ss_pred HhcCCCC
Confidence 7777886
No 4
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=8.8e-42 Score=319.51 Aligned_cols=196 Identities=23% Similarity=0.470 Sum_probs=171.5
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
++++|+||+|+..+..|++++|.|+.++ .++|++ +|.+|+++ +|.+ |.++++| ..||+|++. +
T Consensus 5 ~~~~i~R~~p~~~~~~~~~~~y~v~~~~-~~tvLd--aL~~Ik~~-----~D~s--L~fr~sCr~giCGsCam~-----I 69 (239)
T PRK13552 5 LTFNIFRYNPQDPGSKPHMVTYQLEETP-GMTLFI--ALNRIREE-----QDPS--LQFDFVCRAGICGSCAMV-----I 69 (239)
T ss_pred EEEEEEeeCCCCCCCCcceEEEEecCCC-CCCHHH--HHHHHHhc-----CCCC--eeEeccCCCCCCCCceeE-----E
Confidence 6789999998422447999999999988 789999 99999976 6666 9999999 999999999 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCCC-CceEEEeCCCCceeeecccChhHHHHHH-Hhc
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQY-KSI 253 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~~-~~~~I~pL~~~pvikDLvvD~~~~~~~~-~~~ 253 (340)
|| .. .++|.+++.+.. +.++||||++||||||||||+++||+++ +++
T Consensus 70 NG---------------------------~~----~LAC~t~v~~~~~~~i~iePl~~fpVirDLvVD~~~~~~~~~~~v 118 (239)
T PRK13552 70 NG---------------------------RP----TLACRTLTSDYPDGVITLMPLPVFKLIGDLSVNTGKWFREMSERV 118 (239)
T ss_pred CC---------------------------eE----hhhhhccHhhcCCCcEEEEECCCCCcceeCccccHHHHHHHHHhh
Confidence 99 45 888999998863 5899999999999999999999999999 899
Q ss_pred CCcccCCCCCC-CcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHH-H
Q psy5785 254 QPWLQRDKENI-GNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL-N 331 (340)
Q Consensus 254 ~p~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl-~ 331 (340)
+|||..+.... +..+.+|+|+++++++.+.+||+||+|+++||++..+ ..|+||+++++++||++|+||+...+|+ +
T Consensus 119 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~~~~ 197 (239)
T PRK13552 119 ESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAACGTKQMR-EDFVGAVGLNRIARFELDPRDERTDEDFYE 197 (239)
T ss_pred cCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHhhCCCCccC-CCccChHHHHHHHHHhhCCCcchhHHHHHH
Confidence 99999753322 2246899999999999999999999999999998765 4799999999999999999999888888 6
Q ss_pred hhcCCCCCC
Q psy5785 332 QLKDPFSVY 340 (340)
Q Consensus 332 ~l~~~~~~~ 340 (340)
.+.+++|+|
T Consensus 198 ~l~~~~gi~ 206 (239)
T PRK13552 198 LIGNDDGVF 206 (239)
T ss_pred HhccCCCcC
Confidence 677778886
No 5
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=3.7e-41 Score=314.55 Aligned_cols=195 Identities=42% Similarity=0.831 Sum_probs=172.5
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
.+++|+||+|+. +..|+++.|.|+.++-.++|++ +|.+|+ + +++. +.++++| ..||+|.+. +
T Consensus 5 ~~~~i~R~~~~~-~~~~~~~~y~v~~~~~~~tvld--~L~~ik-~-----~d~~--l~fr~sCr~giCGsCa~~-----i 68 (235)
T PRK12575 5 RILHIYRYDPDD-DAAPRMQRYEIAPRAEDRMLLD--VLGRVK-A-----QDET--LSYRRSCREGICGSDAMN-----I 68 (235)
T ss_pred EEEEEEeeCCCC-CCCceeEEEEecCCCCCCcHHH--HHHHHH-h-----cCCC--eeeeccCCCCCCCCCeeE-----E
Confidence 578899999864 5579999999998753458999 999998 4 4555 9999999 999999999 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCCCCceEEEeCCCCceeeecccChhHHHHHHHhcCC
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQP 255 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~p 255 (340)
|| .. .++|.+++.+..+.++|+||++||||||||||+++||++|++++|
T Consensus 69 NG---------------------------~~----~LaC~t~~~~~~~~i~iePl~~~pvikDLvvD~~~~~~~~~~~~p 117 (235)
T PRK12575 69 NG---------------------------RN----GLACLTNMQALPREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRP 117 (235)
T ss_pred CC---------------------------eE----cchhhCcHhHcCCCEEEeECCCCCccccceecCHHHHHHHHhccC
Confidence 99 45 889999998876789999999999999999999999999999999
Q ss_pred cccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhhcC
Q psy5785 256 WLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335 (340)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l~~ 335 (340)
||..++.. +..+.+|+|+++++++.+.+||+||+|+++||++..+++.|+||+++++++|++.|+||+.+++||+.+.+
T Consensus 118 ~l~~~~~~-~~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~ 196 (235)
T PRK12575 118 YLINDTVP-PERERLQTPQEREQLDGLYECILCACCSTACPSYWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLED 196 (235)
T ss_pred ccccCCCC-ccccccCCHHHHHHHHhhhhCcccccccccccCccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhc
Confidence 99876542 23468999999999999999999999999999997666679999999999999999999999999998888
Q ss_pred CCCCC
Q psy5785 336 PFSVY 340 (340)
Q Consensus 336 ~~~~~ 340 (340)
++|+|
T Consensus 197 ~~gl~ 201 (235)
T PRK12575 197 PYRLF 201 (235)
T ss_pred CCCcc
Confidence 88886
No 6
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=4.7e-41 Score=316.31 Aligned_cols=201 Identities=20% Similarity=0.333 Sum_probs=171.7
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
++++|.||+| ++..||+++|.|+.++ .++|++ +|.+|+++......+....+.++++| ..||+|.+. +
T Consensus 6 ~~~~i~R~~~--~~~~~~~q~y~v~~~~-~~tvLd--aL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~-----I 75 (249)
T PRK08640 6 VRLIIKRQDG--PDSKPYWEEFEIPYRP-NMNVIS--ALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMV-----I 75 (249)
T ss_pred EEEEEEeeCC--CCCCceeEEEEecCCC-CCcHHH--HHHHHHhcccccccccCCCeeEecccCCCCCCcCeeE-----E
Confidence 6788999997 3568999999999987 779999 99999864211111112339999999 999999999 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCCCCceEEEeCCCCceeeecccChhHHHHHHHhcCC
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQP 255 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~p 255 (340)
|| .. .++|.+++.+.++.|+||||++||||||||||+++||+++++++|
T Consensus 76 NG---------------------------~p----~LAC~t~v~~~~~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p 124 (249)
T PRK08640 76 NG---------------------------KP----RQACTALIDQLEQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKA 124 (249)
T ss_pred CC---------------------------cc----chhhhChHHHcCCcEEEEECCCCCccccCcEEChHHHHHHHhhCC
Confidence 99 45 788999998777789999999999999999999999999999999
Q ss_pred cccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCC-CCCcHHHHHHhhc
Q psy5785 256 WLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDS-RDEKTADRLNQLK 334 (340)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~-Rd~~~~~rl~~l~ 334 (340)
||..+.......+.+|+|+++++++.+..||+||+|+++||++..++ +|+||++++++|||..|+ |+...++||+.+.
T Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~C~saCP~~~~~~-~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~ 203 (249)
T PRK08640 125 WIPIDGTYDLGPGPRMPEEKRQWAYELSKCMTCGCCLEACPNVNEKS-DFIGPAAISQVRLFNAHPTGEMHKEERLRALM 203 (249)
T ss_pred ccccCCCCCCCcccCCCHHHHHHHhhhhhccCcCcccccCCCCccCC-CccChHHHHHHHHHhcCcCcCccHHHHHHHhh
Confidence 99987653333467899999999999999999999999999998664 799999999999999999 6667899999887
Q ss_pred CCCCCC
Q psy5785 335 DPFSVY 340 (340)
Q Consensus 335 ~~~~~~ 340 (340)
+.+|+|
T Consensus 204 ~~~g~~ 209 (249)
T PRK08640 204 GDGGIA 209 (249)
T ss_pred cCCCee
Confidence 788876
No 7
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=1.9e-40 Score=308.16 Aligned_cols=155 Identities=43% Similarity=0.742 Sum_probs=131.2
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-cceeE--
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKTF-- 100 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~tl-- 100 (340)
++++|+||||||+. + +||||+|+|+.+. |+||+|||+ |||+|||+|+ ||.|+
T Consensus 1 ~~~~~~i~R~~p~~-~-~p~~~~yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~ 78 (234)
T COG0479 1 MTLKFKIYRYNPDD-D-KPYWQTYEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMK 78 (234)
T ss_pred CcEEEEEEEECCCC-C-CcceEEEEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccccchhchhh
Confidence 47899999999975 4 9999999999742 899999999 5899999999 99765
Q ss_pred -------EeeccCCCCCCCCCceEEEEEeccc-------ccccccccchhhhcchhcccCCchhhhcccccccCccCccc
Q psy5785 101 -------AIYRWNPDKPDEKPTMQEYKVDLNN-------QLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACC 166 (340)
Q Consensus 101 -------~I~r~~p~lp~~~PvikDLvVD~s~-------~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~C 166 (340)
+|+|+ ++|||||||+||++. +++|+..+ ......+.+|+|+++++++.++.||+||+|
T Consensus 79 ~~~~~~i~iePL-----~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~---~~~~~~~~~q~pe~~~~~~~~~~CI~Cg~C 150 (234)
T COG0479 79 DLEEGVITIEPL-----PNFPVIRDLVVDMEEFYEKLRKIKPYLIRD---DEPDPGERLQSPEEREKLDELSECILCGCC 150 (234)
T ss_pred hccCCceEEEEC-----CCCCceeeeeeccHHHHHhhhccccceecC---CcCCCccccCCHHHHHHHHhhhhccccchh
Confidence 56664 469999999999987 56666431 111112378999999999999999999999
Q ss_pred ccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCc
Q psy5785 167 STSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPF 212 (340)
Q Consensus 167 ~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~ 212 (340)
+++||++|+|+ +|+||++|+|||||++||||+.+++|+..+.+..
T Consensus 151 ~s~CP~~~~~~-~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~ 195 (234)
T COG0479 151 TAACPSIWWNP-DFLGPAALRQAYRFLADSRDEGTAERLKILEDPD 195 (234)
T ss_pred hhhCCcccccc-CCcCHHHHHHHHHHhcCCcccchHHHHHhccCCC
Confidence 99999999995 8999999999999999999999999998775433
No 8
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.3e-38 Score=298.22 Aligned_cols=189 Identities=20% Similarity=0.363 Sum_probs=164.2
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
++++|.|++| ..|++++|.|+.++ ..+|++ +|.+|+.+ +++. +.+.++| ..||+|.+. +
T Consensus 5 ~~~~I~R~~~----~~~~~q~y~v~~~~-~~tvLd--~L~~i~~~-----~d~~--l~~r~~C~~g~CGsCa~~-----I 65 (251)
T PRK12386 5 AKFRVWRGDA----SGGELQDYTVEVNE-GEVVLD--VIHRLQAT-----QAPD--LAVRWNCKAGKCGSCSAE-----I 65 (251)
T ss_pred EEEEEEcCCC----CCCceEEEEEeCCC-CCCHHH--HHHHhccc-----cCCC--CcccCCCCCCcCCCCEEE-----E
Confidence 5788999975 24799999999987 678999 99888865 5655 8899999 999999998 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC--CCceEEEeCCCCceeeecccChhHHHHHHHhc
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN--DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSI 253 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~--~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~ 253 (340)
|| .. .++|.+.+.+. .+.++||||++||||||||||+++||++|+++
T Consensus 66 nG---------------------------~p----~laC~t~~~~~~~~~~itiepl~~fpVikDLvVD~~~~~~~l~~i 114 (251)
T PRK12386 66 NG---------------------------RP----RLMCMTRMSTFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREI 114 (251)
T ss_pred Cc---------------------------cE----eccHHhHHHHhCCCCeEEEccCCCCCccccceEEcHHHHHHHHhc
Confidence 98 45 88899998764 36899999999999999999999999999999
Q ss_pred CCcccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccC---CCccccHHHHHHHHHHhcCCCCCcHHHHH
Q psy5785 254 QPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWN---GEKYLGPAVLMQAYRWIIDSRDEKTADRL 330 (340)
Q Consensus 254 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~---~~~flGPa~l~ka~r~~~D~Rd~~~~~rl 330 (340)
+|||..++... .+++|+|+++++++.+++||+||+|+++||++..+ +++|+||+++++++||++||||+ .+||
T Consensus 115 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~CI~CG~C~s~CPv~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~--~~rl 190 (251)
T PRK12386 115 PSFTPPKDLQP--GEYRMQQVDVERSQEFRKCIECFLCQNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDT--ADRR 190 (251)
T ss_pred CCcccCCCCCc--cccCCCHHHHHHHhchhhcccCCcccCcCCcccccCCCcccccCHHHHHHHHHhhcCccch--HHHH
Confidence 99998654322 46889999999999999999999999999999754 35799999999999999999996 5799
Q ss_pred HhhcCCCCCC
Q psy5785 331 NQLKDPFSVY 340 (340)
Q Consensus 331 ~~l~~~~~~~ 340 (340)
+.+.+++|+|
T Consensus 191 ~~~~~~~gl~ 200 (251)
T PRK12386 191 AEAQEEHGLG 200 (251)
T ss_pred HHhhcccCcc
Confidence 8877777875
No 9
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=3.6e-38 Score=295.99 Aligned_cols=195 Identities=24% Similarity=0.471 Sum_probs=171.4
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
++++|+||+|+. +..|+++.|.|+.++ ..+|++ +|.+|++. .+.. +.+..+| ..||+|.+. +
T Consensus 7 v~~~i~R~~~~~-~~~~~~~~~~v~~~~-~~tvl~--~L~~ik~~-----~d~~--l~fr~~C~~giCGsC~v~-----I 70 (244)
T PRK12385 7 LKIEVLRYNPEV-DTEPHSQTYEVPYDE-TTSLLD--ALGYIKDN-----LAPD--LSYRWSCRMAICGSCGMM-----V 70 (244)
T ss_pred EEEEEEeeCCCC-CCCceeEEEEeeCCC-CCcHHH--HHHHHHHh-----cCCC--ceeccCCCCCcCCCCcce-----E
Confidence 678999999864 457999999999887 679999 99999865 4444 7788899 999999998 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCCCCceEEEeCCCCceeeecccChhHHHHHHHhcCC
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQP 255 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~p 255 (340)
|| .. .++|.+++.++++.++|+||++||||||||||+++||+++++++|
T Consensus 71 nG---------------------------~~----~laC~t~~~~~~~~~~iePl~~fpvikDLvvD~~~~~~k~~~~~~ 119 (244)
T PRK12385 71 NN---------------------------VP----KLACKTFLRDYTGGMKVEALANFPIERDLVVDMTHFIESLEAIKP 119 (244)
T ss_pred Cc---------------------------cC----hhhHhhHHHHcCCCeEEeeCCCCCeeeeCeeecHHHHHHHHHhcC
Confidence 98 34 678999999876779999999999999999999999999999999
Q ss_pred cccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhhcC
Q psy5785 256 WLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335 (340)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l~~ 335 (340)
|+..+....++.+.+|+|+++++++.+.+||+||+|+++||++..+ .+|+||++|++++||..|+||+.+.+|++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~~~~-~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~ 198 (244)
T PRK12385 120 YIIGNDRTPDDGPNKQTPAQMAKYHQFSGCINCGLCYAACPQFGLN-PEFIGPAAITLAHRYNLDSRDHGKKERMKQLNG 198 (244)
T ss_pred eeeCCCCCCCcccccCCHHHHHHHHHHHhcCcCccccCcCcCcccC-CCCCCHHHHHHHHHHhhcCCccchHHHHHhhcc
Confidence 9987765444456889999999999999999999999999998765 579999999999999999999999999998877
Q ss_pred CCCCC
Q psy5785 336 PFSVY 340 (340)
Q Consensus 336 ~~~~~ 340 (340)
++|+|
T Consensus 199 ~~gl~ 203 (244)
T PRK12385 199 QNGVW 203 (244)
T ss_pred cchhh
Confidence 77875
No 10
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=303.24 Aligned_cols=193 Identities=28% Similarity=0.510 Sum_probs=168.8
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
++++|+||+|+ ..||+++|.|+.++ +.+|++ ++.+++.. .+++ +.+..+| ..||+|++. +
T Consensus 3 i~~~i~R~~~~---~~p~~~~~~v~~~~-~~tvL~--~l~~i~~~-----~d~t--L~~~~~c~~~~Cg~C~v~-----i 64 (329)
T PRK12577 3 VLFKILRQKQN---SAPYVQTYTLEVEP-GNTILD--CLNRIKWE-----QDGS--LAFRKNCRNTICGSCAMR-----I 64 (329)
T ss_pred EEEEEEeeCCC---CCCeEEEEEEECCC-CChHHH--HHHHhCCc-----CCCC--cEEcCCCCCCCCCCCEEE-----E
Confidence 47889999973 47999999999987 779999 98888765 4444 8888999 899999988 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC-----------CCceEEEeCCCCceeeecccChh
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN-----------DKVSKIYPLPHMYVVKDLVPDMN 244 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~-----------~~~~~I~pL~~~pvikDLvvD~~ 244 (340)
|| .. .++|.+.+.+. ++.++||||++||||||||||++
T Consensus 65 nG---------------------------~~----~laC~t~v~~~~~~~~~~~~~~~~~i~iePl~~~pvikDLvVD~~ 113 (329)
T PRK12577 65 NG---------------------------RS----ALACKENVGSELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMS 113 (329)
T ss_pred CC---------------------------ee----ecCcccchhhhhccccccccCCCCeEEEEECCCCCccccceeccH
Confidence 98 33 56898887641 37899999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCC
Q psy5785 245 NFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 324 (340)
Q Consensus 245 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~ 324 (340)
+||+++++++||+..+....++.+++|+|+++++++.+..||+||+|+++||++..+ .+|+||++++++||++.|+||+
T Consensus 114 ~~~~k~~~v~p~~~~~~~~~~~~e~~~~p~~~~~~~~~~~Ci~CG~C~s~CP~~~~~-~~f~GP~~~~~a~r~~~d~rd~ 192 (329)
T PRK12577 114 SFWQNLEAVDPYVSTAARQVPEREFLQTPEERSKLDQTGNCILCGACYSECNAREVN-PEFVGPHALAKAQRMVADSRDT 192 (329)
T ss_pred HHHHHHHhccCccccCCCCCCcccccCCHHHHHHHHHhhhCcccCcccccCCCCCcC-cCcCCHHHHHHHHHHhhCCcch
Confidence 999999999999998766555668999999999999999999999999999999876 4799999999999999999999
Q ss_pred cHHHHHHhhc-CCCCCC
Q psy5785 325 KTADRLNQLK-DPFSVY 340 (340)
Q Consensus 325 ~~~~rl~~l~-~~~~~~ 340 (340)
.+++||+.+. +++|||
T Consensus 193 ~~~~~l~~~~~~~~giw 209 (329)
T PRK12577 193 ATEQRLELYNQGTAGVW 209 (329)
T ss_pred hHHHHHHHHhcCCCccc
Confidence 9999999876 677876
No 11
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=100.00 E-value=6.6e-38 Score=298.18 Aligned_cols=156 Identities=47% Similarity=0.814 Sum_probs=128.4
Q ss_pred CCCcceEEEEEecCCCCCCCCCceeeeccccc---h----------------hhhhhhccc-----ccccccCCcc-cce
Q psy5785 44 KPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN---I----------------RSFQLSAAA-----SSAVPAEKPA-KYK 98 (340)
Q Consensus 44 ~~~~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~---~----------------lafr~sCre-----cam~iNG~p~-ac~ 98 (340)
+++++++|+|+||||+. +++||||+|+|+.. . |+||+|||+ |+|+|||+|+ +|.
T Consensus 39 ~~~~~~~~~i~R~~p~~-~~~~~~~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~p~LAC~ 117 (276)
T PLN00129 39 KPSNLKEFQIYRWNPDN-PGKPHLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLACL 117 (276)
T ss_pred CCCceEEEEEEeeCCCC-CCCceeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCccccccc
Confidence 46678999999999974 66999999999952 1 899999999 5899999999 996
Q ss_pred eE---------EeeccCCCCCCCCCceEEEEEeccc-------ccccccccchhhhcchhcccCCchhhhcccccccCcc
Q psy5785 99 TF---------AIYRWNPDKPDEKPTMQEYKVDLNN-------QLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECIL 162 (340)
Q Consensus 99 tl---------~I~r~~p~lp~~~PvikDLvVD~s~-------~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~ 162 (340)
|. +|+|+ .+||+||||+||++. +++|+..+.. ......+.+|++++.++++.+..||.
T Consensus 118 t~v~~~~~~~i~iePl-----~~fpVirDLvVD~~~f~~klk~v~p~l~~~~~-~~~~~~~~~q~pe~~~~~~~~~~CI~ 191 (276)
T PLN00129 118 TKIDRDESGPTTITPL-----PHMFVIKDLVVDMTNFYQQYKSIEPWLKTKKP-PEDGQKEHLQSKEDRAKLDGMYECIL 191 (276)
T ss_pred ccHhhcCCCcEEEEEC-----CCCCeeeecccccHHHHHHHHhccccccCCCC-CCCCccccCCCHHHHHHHhhhhhCcc
Confidence 54 56664 469999999999987 4555542110 00111267889999999999999999
Q ss_pred CcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhh
Q psy5785 163 CACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLN 206 (340)
Q Consensus 163 CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~ 206 (340)
||+|.++||++++|+++|+||++|+++|||+.||||+..++|++
T Consensus 192 CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~~~~erl~ 235 (276)
T PLN00129 192 CACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLE 235 (276)
T ss_pred ccccccccCCCcccCcccccHHHHHHHHHhcCCccccchHHHHH
Confidence 99999999999888888999999999999999999987777765
No 12
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=8.5e-37 Score=285.88 Aligned_cols=151 Identities=23% Similarity=0.442 Sum_probs=123.0
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-ccee---
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKT--- 99 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~t--- 99 (340)
+++||+|+||||+..+++|+||+|+|+... |+||+|||+ |||+|||+|+ ||.|
T Consensus 3 ~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC~t~v~ 82 (239)
T PRK13552 3 RTLTFNIFRYNPQDPGSKPHMVTYQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRTLTS 82 (239)
T ss_pred ceEEEEEEeeCCCCCCCCcceEEEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhhhccHh
Confidence 579999999999655678999999999631 999999999 5899999999 9954
Q ss_pred ------EEeeccCCCCCCCCCceEEEEEecccccccc-cccchhhhcc--------hhcccCCchhhhcccccccCccCc
Q psy5785 100 ------FAIYRWNPDKPDEKPTMQEYKVDLNNQLNFS-ARSSHATAIS--------NAQYLQSLDDRKKLDGLYECILCA 164 (340)
Q Consensus 100 ------l~I~r~~p~lp~~~PvikDLvVD~s~~~~~v-~~~~~l~~i~--------~~e~~~~~e~~~~l~~~~~CI~CG 164 (340)
++|+|+ ++||++|||+||++.+...+ .. ...++. ..+.+|++++.++++.+..||.||
T Consensus 83 ~~~~~~i~iePl-----~~fpVirDLvVD~~~~~~~~~~~--v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg 155 (239)
T PRK13552 83 DYPDGVITLMPL-----PVFKLIGDLSVNTGKWFREMSER--VESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECG 155 (239)
T ss_pred hcCCCcEEEEEC-----CCCCcceeCccccHHHHHHHHHh--hcCccccCCCCCCcccccCCCHHHHHHhhchhhccccc
Confidence 466764 46999999999998743333 22 111211 125678999999999999999999
Q ss_pred ccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhh
Q psy5785 165 CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 205 (340)
Q Consensus 165 ~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl 205 (340)
+|.++||+++.+ .+|+||++++++|||++||||+..++|+
T Consensus 156 ~C~saCP~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~~ 195 (239)
T PRK13552 156 CCVAACGTKQMR-EDFVGAVGLNRIARFELDPRDERTDEDF 195 (239)
T ss_pred hhHhhCCCCccC-CCccChHHHHHHHHHhhCCCcchhHHHH
Confidence 999999999888 5799999999999999999987655554
No 13
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=1.5e-35 Score=275.87 Aligned_cols=194 Identities=51% Similarity=0.887 Sum_probs=167.5
Q ss_pred eEEeeccCCCCCCCCCceEEEEEecc-cccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 99 TFAIYRWNPDKPDEKPTMQEYKVDLN-NQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 99 tl~I~r~~p~lp~~~PvikDLvVD~s-~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
|++|+||+|+. +..|+++.+.|+.. + .++|++ +|..+++. .++. +.+..+| ..||+|... +
T Consensus 1 ~~~v~r~~~~~-~~~~~~~~~~v~~~~~-~~tvl~--~L~~~~~~-----~~~~--l~~~~~c~~g~Cg~C~v~-----v 64 (232)
T PRK05950 1 TFKIYRYNPDV-DANPRMQTYEVDVDEC-GPMVLD--ALIKIKNE-----IDPT--LTFRRSCREGVCGSDAMN-----I 64 (232)
T ss_pred CeEEEecCCCC-CCCceeEEEEeCCCCC-CCHHHH--HHHHhCCc-----cCCc--ceeeCCCCCCCCCCCEEE-----E
Confidence 57899999864 56899999999987 6 678998 88887644 3334 7778899 899999988 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC-CCceEEEeCCCCceeeecccChhHHHHHHHhcC
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQ 254 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~-~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~ 254 (340)
|| .. .++|.+.+.+. +++++||||++||||||||||+++||+++++++
T Consensus 65 nG---------------------------~~----~laC~t~~~~~~~~~~tiepl~~~~vikDLvvD~~~~~~~~~~~~ 113 (232)
T PRK05950 65 NG---------------------------KN----GLACITPISDLKKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIK 113 (232)
T ss_pred CC---------------------------cC----ccchhChHhHcCCCeEEEEECCCCCeeeeceeehHHHHHHHHhcc
Confidence 98 34 56899999886 678999999999999999999999999999999
Q ss_pred CcccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhhc
Q psy5785 255 PWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334 (340)
Q Consensus 255 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l~ 334 (340)
||+..+... +..+..|+|+++++++.+.+||.||.|+++||++..+++.|+||+++++++|++.|+|++..++|++.+.
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~ 192 (232)
T PRK05950 114 PYLINDTPP-PARERLQSPEDREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERLDILD 192 (232)
T ss_pred CeecCCCCC-CchhccCCHHHHHHHHhHHhccccccccccCCccccCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhh
Confidence 999876543 3346789999999999999999999999999998766556999999999999999999998899999887
Q ss_pred CCCCCC
Q psy5785 335 DPFSVY 340 (340)
Q Consensus 335 ~~~~~~ 340 (340)
++.|+|
T Consensus 193 ~~~~i~ 198 (232)
T PRK05950 193 DPFGVF 198 (232)
T ss_pred cccccc
Confidence 777776
No 14
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=3.9e-36 Score=280.79 Aligned_cols=151 Identities=40% Similarity=0.769 Sum_probs=126.1
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccccc---h---------------hhhhhhccc-----ccccccCCcc-ccee---
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKN---I---------------RSFQLSAAA-----SSAVPAEKPA-KYKT--- 99 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~---~---------------lafr~sCre-----cam~iNG~p~-ac~t--- 99 (340)
.++||+||||||+. +++||||+|+|+.. . |+||+|||+ |||+|||+|+ ||.|
T Consensus 3 ~~~~~~i~R~~~~~-~~~~~~~~y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~iNG~~~LaC~t~~~ 81 (235)
T PRK12575 3 DTRILHIYRYDPDD-DAAPRMQRYEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNINGRNGLACLTNMQ 81 (235)
T ss_pred ceEEEEEEeeCCCC-CCCceeEEEEecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEECCeEcchhhCcHh
Confidence 57999999999964 77899999999852 1 899999999 5899999999 9944
Q ss_pred -----EEeeccCCCCCCCCCceEEEEEeccc-------ccccccccchhhhcchhcccCCchhhhcccccccCccCcccc
Q psy5785 100 -----FAIYRWNPDKPDEKPTMQEYKVDLNN-------QLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCS 167 (340)
Q Consensus 100 -----l~I~r~~p~lp~~~PvikDLvVD~s~-------~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~C~ 167 (340)
++|+|+ .+||++|||+||+++ +++|+..+. .....+.+|++++.++++....||.||+|.
T Consensus 82 ~~~~~i~iePl-----~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~---~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~ 153 (235)
T PRK12575 82 ALPREIVLRPL-----PGLPVVRDLIVDMTDFFNQYHSIRPYLINDT---VPPERERLQTPQEREQLDGLYECILCACCS 153 (235)
T ss_pred HcCCCEEEeEC-----CCCCccccceecCHHHHHHHHhccCccccCC---CCccccccCCHHHHHHHHhhhhCccccccc
Confidence 467775 469999999999986 455554311 111235778999999999999999999999
Q ss_pred cCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhh
Q psy5785 168 TSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLN 206 (340)
Q Consensus 168 s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~ 206 (340)
++||+++.++++|+||+++++++||+.|+||+.+++|++
T Consensus 154 s~CP~~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~ 192 (235)
T PRK12575 154 TACPSYWWNPDKFVGPAGLLQAYRFIADSRDDATAARLD 192 (235)
T ss_pred ccccCccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 999999888788999999999999999999987777766
No 15
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=9.9e-35 Score=277.50 Aligned_cols=188 Identities=30% Similarity=0.532 Sum_probs=161.0
Q ss_pred cceeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcc
Q psy5785 96 KYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSY 173 (340)
Q Consensus 96 ac~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~ 173 (340)
..++++|+||+|+ .-||++.+.|+.++ .++|++ +|.+++.. .+.+ +.+..+| ..||+|...
T Consensus 7 ~~~~~~i~R~~~~---~~~~~~~~~v~~~~-~~tvLd--~L~~i~~~-----~d~t--l~~~~~C~~G~CgsC~v~---- 69 (279)
T PRK12576 7 KEVIFKVKRYDPE---KGSWWQEYKVKVDR-FTQVTE--ALRRIKEE-----QDPT--LSYRASCHMAVCGSCGMK---- 69 (279)
T ss_pred cEEEEEEEecCCC---CCCeEEEEEEecCC-CCHHHH--HHHHhCCc-----cCCC--ceecCCCCCCCCCCCEEE----
Confidence 3467899999985 24999999999887 779999 88888754 3334 7778889 899999988
Q ss_pred ccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC----CCceEEEeCCCCceeeecccChhHHHHH
Q psy5785 174 WWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN----DKVSKIYPLPHMYVVKDLVPDMNNFYAQ 249 (340)
Q Consensus 174 ~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~----~~~~~I~pL~~~pvikDLvvD~~~~~~~ 249 (340)
+|| .. .++|.+.+.+. ++.++||||++||||||||||+++||++
T Consensus 70 -ING---------------------------~~----~laC~t~v~~~~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k 117 (279)
T PRK12576 70 -ING---------------------------EP----RLACKTLVLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYER 117 (279)
T ss_pred -ECC---------------------------cE----eccccCcHHHhhcCCCCcEEEEECCCCceeecceechHHHHHH
Confidence 998 34 56899888763 5689999999999999999999999999
Q ss_pred HHhcCCcccCCCCC-CCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHH
Q psy5785 250 YKSIQPWLQRDKEN-IGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTAD 328 (340)
Q Consensus 250 ~~~~~p~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~ 328 (340)
+++++|||.++.+. .+..+.+|+|+++++++.+..||+||+|+++||++..+ .+|+||+++++++|++.|+|++...+
T Consensus 118 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~~~CP~~~~~-~~flgP~~l~~a~r~~~d~rd~~~~~ 196 (279)
T PRK12576 118 MFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCVSACPVVAID-PEFLGPAAHAKGYRFLADPRDTITEE 196 (279)
T ss_pred HHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCcccccCCCcccc-CCcCCHHHHHHHHHHhcCccccchHH
Confidence 99999999977542 22347899999999999999999999999999999765 47999999999999999999998899
Q ss_pred HHHhh
Q psy5785 329 RLNQL 333 (340)
Q Consensus 329 rl~~l 333 (340)
||..+
T Consensus 197 rl~~~ 201 (279)
T PRK12576 197 RMKIL 201 (279)
T ss_pred HHHHH
Confidence 99765
No 16
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=100.00 E-value=6.5e-34 Score=262.87 Aligned_cols=191 Identities=41% Similarity=0.776 Sum_probs=160.9
Q ss_pred eeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCccccCCCc
Q psy5785 102 IYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWWNGEK 179 (340)
Q Consensus 102 I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ng~~ 179 (340)
|+||+|+. +..|+++.|.|+..+ +.+|++ +|..+++. .+.. +.+..+| +.||+|... +||
T Consensus 1 i~R~~~~~-~~~~~~~~~~v~~~~-~~tvl~--~l~~i~~~-----~~~~--l~~~~~C~~g~Cg~C~v~-----vnG-- 62 (220)
T TIGR00384 1 VLRFNPDV-DEKPHLQSYEVPADE-GMTVLD--ALNYIKDE-----QDPS--LAFRRSCRNGICGSCAMN-----VNG-- 62 (220)
T ss_pred CcCcCCCC-CCCceeEEEEEeCCC-CCcHHH--HHHHHHHh-----cCCC--ceeecccCCCCCCCCeeE-----ECC--
Confidence 56888754 568999999999887 678998 88887744 3334 7778889 899999887 887
Q ss_pred cCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC-CCceEEEeCCCCceeeecccChhHHHHHHHhcCCccc
Q psy5785 180 YLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQ 258 (340)
Q Consensus 180 flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~-~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~p~l~ 258 (340)
.. .++|.+.+.+. ...++||||++||||||||||+++||+++++++||+.
T Consensus 63 -------------------------~~----~laC~t~v~~~g~~~~~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~ 113 (220)
T TIGR00384 63 -------------------------KP----VLACKTKVEDLGQPVMKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLI 113 (220)
T ss_pred -------------------------EE----hhhhhChHHHcCCCcEEEeeCCCCceeeeeeechHHHHHHHHhcCCeec
Confidence 33 56899999984 4458999999999999999999999999999999998
Q ss_pred CCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCC
Q psy5785 259 RDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFS 338 (340)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l~~~~~ 338 (340)
.+....++.+.+|+|+++++++.+.+||.||+|+++||++..++ +|+||+++++++|++.|+|++...+|++.+.+..|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~~-~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~ 192 (220)
T TIGR00384 114 RKSQPEPEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWNP-EFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNG 192 (220)
T ss_pred CCCCCCccccccCCHHHHHHHhhhhhccccccccccCCCCccCC-CCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCC
Confidence 76543333467899999999999999999999999999997654 69999999999999999999888999987765666
Q ss_pred CC
Q psy5785 339 VY 340 (340)
Q Consensus 339 ~~ 340 (340)
+|
T Consensus 193 ~~ 194 (220)
T TIGR00384 193 VW 194 (220)
T ss_pred Cc
Confidence 65
No 17
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=6.6e-34 Score=267.87 Aligned_cols=166 Identities=19% Similarity=0.292 Sum_probs=132.7
Q ss_pred CcceEEEEEecCCCCCCCCCceeeeccccc-------------------------hhhhhhhccc-----ccccccCCcc
Q psy5785 46 AKYKTFAIYRWNPDKPDEKPTMQEYKTAKN-------------------------IRSFQLSAAA-----SSAVPAEKPA 95 (340)
Q Consensus 46 ~~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~-------------------------~lafr~sCre-----cam~iNG~p~ 95 (340)
.+++||+|||||| ++.+||||+|+|+.. .|+||+|||+ |||+|||+|+
T Consensus 3 ~~~~~~~i~R~~~--~~~~~~~q~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~ 80 (249)
T PRK08640 3 EKTVRLIIKRQDG--PDSKPYWEEFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPR 80 (249)
T ss_pred CcEEEEEEEeeCC--CCCCceeEEEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccc
Confidence 4679999999998 366899999999852 1899999999 5899999999
Q ss_pred -cce--------eEEeeccCCCCCCCCCceEEEEEeccc-------ccccccccchhhhcchhcccCCchhhhccccccc
Q psy5785 96 -KYK--------TFAIYRWNPDKPDEKPTMQEYKVDLNN-------QLNFSARSSHATAISNAQYLQSLDDRKKLDGLYE 159 (340)
Q Consensus 96 -ac~--------tl~I~r~~p~lp~~~PvikDLvVD~s~-------~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~ 159 (340)
||. +++|+|+ ++|||+|||+||+++ +++|+..+. ......+..|++++.++++....
T Consensus 81 LAC~t~v~~~~~~i~iePl-----~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 153 (249)
T PRK08640 81 QACTALIDQLEQPIRLEPM-----STFPVVRDLQVDRSRMFDNLKRVKAWIPIDG--TYDLGPGPRMPEEKRQWAYELSK 153 (249)
T ss_pred hhhhChHHHcCCcEEEEEC-----CCCCccccCcEEChHHHHHHHhhCCccccCC--CCCCCcccCCCHHHHHHHhhhhh
Confidence 994 4577775 469999999999998 344543210 00112345788999999999999
Q ss_pred CccCcccccCCCccccCCCccCChHHHHHHHHHhhCC-cchhHHHhhhcc------CCCc---cccccccCC
Q psy5785 160 CILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDS-RDEKTADRLNQL------KDPF---SVYSKIDAN 221 (340)
Q Consensus 160 CI~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~Dp-RD~~~~~Rl~~l------~~~~---~c~~~~~~~ 221 (340)
||.||+|.++||+++.| .+|+||++++++|||..|| ||...++|++.+ +++. .|...|+++
T Consensus 154 CI~CG~C~saCP~~~~~-~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkg 224 (249)
T PRK08640 154 CMTCGCCLEACPNVNEK-SDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKG 224 (249)
T ss_pred ccCcCcccccCCCCccC-CCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCC
Confidence 99999999999999888 4799999999999999999 665677887655 3333 666788875
No 18
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=100.00 E-value=2.3e-33 Score=264.22 Aligned_cols=173 Identities=18% Similarity=0.276 Sum_probs=140.8
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEe-cccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVD-LNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYW 174 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD-~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~ 174 (340)
++++|+||+| ++..|++++|.|+ .++ .++|++ +|.+|+++. ....++. +.++++| ..||+|++.
T Consensus 3 ~~~~i~R~~~--~~~~~~~q~y~v~~~~~-~~tvLd--~L~~Ik~~~-~~~~~~~--l~fr~sCr~~iCGsCam~----- 69 (250)
T PRK07570 3 LTLKIWRQKG--PDDKGKFETYEVDDISP-DMSFLE--MLDVLNEQL-IEKGEEP--VAFDHDCREGICGMCGLV----- 69 (250)
T ss_pred EEEEEEecCC--CCCCceeEEEEecCCCC-CCcHHH--HHHHHHHHh-hccCCCC--eeEeccccCCcCCcceeE-----
Confidence 4789999985 2557999999999 776 679999 999997541 1112333 9999999 999999999
Q ss_pred cCCCccCChHHHHHHHHHhhCCcchhHHHhhhccC--CCccccccccCC--CCceEEEeCC--CCceeeecccChhHHHH
Q psy5785 175 WNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK--DPFSVYSKIDAN--DKVSKIYPLP--HMYVVKDLVPDMNNFYA 248 (340)
Q Consensus 175 ~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~--~~~~c~~~~~~~--~~~~~I~pL~--~~pvikDLvvD~~~~~~ 248 (340)
+||. ..|. +.++|.+.+.+. ++.|+|+||+ +||||||||||+++| +
T Consensus 70 ING~---------------------------p~~~~~~~LAC~t~~~~~~~~~~i~iePl~~~~fpvikDLvVD~~~~-~ 121 (250)
T PRK07570 70 INGR---------------------------PHGPDRGTTTCQLHMRSFKDGDTITIEPWRAAAFPVIKDLVVDRSAL-D 121 (250)
T ss_pred ECCc---------------------------cCCCCcccchhhhhhhhcCCCCeEEEEECCCCCCCeeeeceeecHHH-H
Confidence 9993 3332 258999998765 4789999999 999999999999996 9
Q ss_pred HHHhcCCcccCCCC-CCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHH
Q psy5785 249 QYKSIQPWLQRDKE-NIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQA 314 (340)
Q Consensus 249 ~~~~~~p~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka 314 (340)
++++++|||.++++ .....+.+|+|+++++++.++.||+||+|+++||++.. +.|+||++ +++
T Consensus 122 ~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~C~saCP~~~~--~~f~Gp~~-~~~ 185 (250)
T PRK07570 122 RIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAAACIGCGACVAACPNGSA--MLFTGAKV-SHL 185 (250)
T ss_pred HHHhcCCeEecCCCCCCCccccCCCHHHHHhhhCccccCCCcccccccCCccc--ccccchhh-hhh
Confidence 99999999998653 22224689999999999999999999999999999963 47999875 444
No 19
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.4e-33 Score=264.09 Aligned_cols=140 Identities=18% Similarity=0.294 Sum_probs=114.9
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-ccee---
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKT--- 99 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~t--- 99 (340)
-+++|+|+||||+ +|+||+|+|+.+. ++||++||+ |+|.|||+|+ +|.|
T Consensus 3 ~~~~~~I~R~~~~----~~~~q~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~laC~t~~~ 78 (251)
T PRK12386 3 YTAKFRVWRGDAS----GGELQDYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRMS 78 (251)
T ss_pred cEEEEEEEcCCCC----CCceEEEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEeccHHhHHH
Confidence 4689999999974 4699999998632 799999999 5899999999 9954
Q ss_pred -------EEeeccCCCCCCCCCceEEEEEecccc-------cccccccchhhhcchhcccCCchhhhcccccccCccCcc
Q psy5785 100 -------FAIYRWNPDKPDEKPTMQEYKVDLNNQ-------LNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCAC 165 (340)
Q Consensus 100 -------l~I~r~~p~lp~~~PvikDLvVD~s~~-------~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~ 165 (340)
++|+|+ .+|||++||+||++.+ ++|+..+.. . ..+.+|++++.++++.+..||.||+
T Consensus 79 ~~~~~~~itiepl-----~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~CI~CG~ 149 (251)
T PRK12386 79 TFDEDETVTVTPM-----RTFPVIRDLVTDVSFNYEKAREIPSFTPPKDL--Q--PGEYRMQQVDVERSQEFRKCIECFL 149 (251)
T ss_pred HhCCCCeEEEccC-----CCCCccccceEEcHHHHHHHHhcCCcccCCCC--C--ccccCCCHHHHHHHhchhhcccCCc
Confidence 356664 4699999999999873 444432100 0 1356788999999999999999999
Q ss_pred cccCCCccccC---CCccCChHHHHHHHHHhhCCcch
Q psy5785 166 CSTSCPSYWWN---GEKYLGPAVLMQAYRWIIDSRDE 199 (340)
Q Consensus 166 C~s~CP~~~~n---g~~flGPa~l~qa~Rf~~DpRD~ 199 (340)
|+++||+++++ +.+|+||++++++|||++||||.
T Consensus 150 C~s~CPv~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~ 186 (251)
T PRK12386 150 CQNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDT 186 (251)
T ss_pred ccCcCCcccccCCCcccccCHHHHHHHHHhhcCccch
Confidence 99999999875 46799999999999999999996
No 20
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=99.97 E-value=1.2e-32 Score=258.61 Aligned_cols=151 Identities=23% Similarity=0.437 Sum_probs=120.5
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-ccee---
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKT--- 99 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~t--- 99 (340)
++++|+|+||||+. +..||||+|+|+... ++||++||+ |+|+|||+++ +|.|
T Consensus 5 ~~v~~~i~R~~~~~-~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC~t~~~ 83 (244)
T PRK12385 5 KNLKIEVLRYNPEV-DTEPHSQTYEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLR 83 (244)
T ss_pred cEEEEEEEeeCCCC-CCCceeEEEEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhHhhHHH
Confidence 46999999999964 668999999998531 799999998 5899999998 9954
Q ss_pred -----EEeeccCCCCCCCCCceEEEEEeccc-------ccccccccchhhhcchhcccCCchhhhcccccccCccCcccc
Q psy5785 100 -----FAIYRWNPDKPDEKPTMQEYKVDLNN-------QLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCS 167 (340)
Q Consensus 100 -----l~I~r~~p~lp~~~PvikDLvVD~s~-------~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~C~ 167 (340)
++|+|+ ++||++|||+||+++ +++|+.. ......+.+.+|++++.+++.....||.||+|+
T Consensus 84 ~~~~~~~iePl-----~~fpvikDLvvD~~~~~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~ 156 (244)
T PRK12385 84 DYTGGMKVEAL-----ANFPIERDLVVDMTHFIESLEAIKPYIIG--NDRTPDDGPNKQTPAQMAKYHQFSGCINCGLCY 156 (244)
T ss_pred HcCCCeEEeeC-----CCCCeeeeCeeecHHHHHHHHHhcCeeeC--CCCCCCcccccCCHHHHHHHHHHHhcCcCcccc
Confidence 466664 469999999999876 3445432 101111224578888888888999999999999
Q ss_pred cCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhh
Q psy5785 168 TSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLN 206 (340)
Q Consensus 168 s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~ 206 (340)
++||+++.+ .+|+||++|+++|||..|+||..+++|+.
T Consensus 157 saCP~~~~~-~~y~GP~~l~~a~r~~~d~rd~~~~~rl~ 194 (244)
T PRK12385 157 AACPQFGLN-PEFIGPAAITLAHRYNLDSRDHGKKERMK 194 (244)
T ss_pred CcCcCcccC-CCCCCHHHHHHHHHHhhcCCccchHHHHH
Confidence 999999888 57999999999999999999976655543
No 21
>KOG3049|consensus
Probab=99.97 E-value=2.9e-33 Score=254.10 Aligned_cols=134 Identities=53% Similarity=0.925 Sum_probs=113.6
Q ss_pred hhhhhhccc-----ccccccCCcc-cceeE---------EeeccCCCCCCCCCceEEEEEeccc-------ccccccccc
Q psy5785 77 RSFQLSAAA-----SSAVPAEKPA-KYKTF---------AIYRWNPDKPDEKPTMQEYKVDLNN-------QLNFSARSS 134 (340)
Q Consensus 77 lafr~sCre-----cam~iNG~p~-ac~tl---------~I~r~~p~lp~~~PvikDLvVD~s~-------~~~~v~~~~ 134 (340)
|+||+|||| |+|+|||... ||+.- +|+|+ |+ .=+++|||+|++. +++|+..++
T Consensus 94 LTFRRSCREGICGSCAMNI~G~NtLACi~kId~n~sK~~kIyPL----PH-mfvvkDLVpDm~~FY~QYksIqPwlqrk~ 168 (288)
T KOG3049|consen 94 LTFRRSCREGICGSCAMNINGTNTLACICKIDQNESKSTKIYPL----PH-MFVVKDLVPDMTNFYAQYKSIEPWLQRKN 168 (288)
T ss_pred eehhhhhhccccccceeccCCCceeEEEEeeccCCcccceeecC----cc-eeeehhhcccHHHHHHHHhcccHHhhcCC
Confidence 999999999 5899999988 88533 45552 22 3345999999886 677876543
Q ss_pred hhhhcchhcccCCchhhhcccccccCccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccc
Q psy5785 135 HATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSV 214 (340)
Q Consensus 135 ~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c 214 (340)
.....++.+++|+.+++++++++++||+|.||+++||+||||+++|+|||+|+|||||.+|+||+.+++|++.|++.++.
T Consensus 169 ~~~~~g~~q~lQS~~dR~kLDGlYECILCACCsTSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~sl 248 (288)
T KOG3049|consen 169 PAKEPGKKQYLQSVEDRAKLDGLYECILCACCSTSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPFSL 248 (288)
T ss_pred cccCccHHHHHHhHHHHHhhccHHHHHHHHHhcCCCcccccCcccccCHHHHHHHHhhhhcchhHHHHHHHHHhcCchhh
Confidence 33333456899999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred c
Q psy5785 215 Y 215 (340)
Q Consensus 215 ~ 215 (340)
|
T Consensus 249 y 249 (288)
T KOG3049|consen 249 Y 249 (288)
T ss_pred e
Confidence 5
No 22
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=99.96 E-value=2.3e-30 Score=243.87 Aligned_cols=131 Identities=19% Similarity=0.328 Sum_probs=100.8
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccc-cch----------------------hhhhhhccc-----ccccccCCc----
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTA-KNI----------------------RSFQLSAAA-----SSAVPAEKP---- 94 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~-~~~----------------------lafr~sCre-----cam~iNG~p---- 94 (340)
+.++|+|||||| ++++|+||+|+|+ ... |+||+|||+ |||+|||+|
T Consensus 1 ~~~~~~i~R~~~--~~~~~~~q~y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~ 78 (250)
T PRK07570 1 MKLTLKIWRQKG--PDDKGKFETYEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPD 78 (250)
T ss_pred CeEEEEEEecCC--CCCCceeEEEEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCC
Confidence 467999999996 3668999999999 421 899999999 589999999
Q ss_pred --c-ccee----------EEeeccCCCCCCCCCceEEEEEecccc------cccccccchhhhcchhcccCCchhhhccc
Q psy5785 95 --A-KYKT----------FAIYRWNPDKPDEKPTMQEYKVDLNNQ------LNFSARSSHATAISNAQYLQSLDDRKKLD 155 (340)
Q Consensus 95 --~-ac~t----------l~I~r~~p~lp~~~PvikDLvVD~s~~------~~~v~~~~~l~~i~~~e~~~~~e~~~~l~ 155 (340)
+ ||.| ++|+|+.. .+||++|||+||++.+ ++|+..+. -......+.+|++++.++++
T Consensus 79 ~~~LAC~t~~~~~~~~~~i~iePl~~---~~fpvikDLvVD~~~~~~~~~~~p~l~~~~-~~~~~~~~~~~~~~~~~~~~ 154 (250)
T PRK07570 79 RGTTTCQLHMRSFKDGDTITIEPWRA---AAFPVIKDLVVDRSALDRIIQAGGYVSVNT-GGAPDANAIPVPKEDADRAF 154 (250)
T ss_pred cccchhhhhhhhcCCCCeEEEEECCC---CCCCeeeeceeecHHHHHHHhcCCeEecCC-CCCCCccccCCCHHHHHhhh
Confidence 6 8854 45666420 2799999999999873 34443100 00111135789999999999
Q ss_pred ccccCccCcccccCCCccccCCCccCChHH
Q psy5785 156 GLYECILCACCSTSCPSYWWNGEKYLGPAV 185 (340)
Q Consensus 156 ~~~~CI~CG~C~s~CP~~~~ng~~flGPa~ 185 (340)
....||.||+|+++||+++. ++|+||++
T Consensus 155 ~~~~CI~CG~C~saCP~~~~--~~f~Gp~~ 182 (250)
T PRK07570 155 DAAACIGCGACVAACPNGSA--MLFTGAKV 182 (250)
T ss_pred CccccCCCcccccccCCccc--ccccchhh
Confidence 99999999999999999974 57999975
No 23
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=99.96 E-value=1.3e-29 Score=247.42 Aligned_cols=164 Identities=24% Similarity=0.398 Sum_probs=132.2
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-cce----
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYK---- 98 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~---- 98 (340)
+.++|+|+||||+. +||||+|+|+... |+||.+|+. |+|.|||++. ||.
T Consensus 1 ~~i~~~i~R~~~~~---~p~~~~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~ 77 (329)
T PRK12577 1 MEVLFKILRQKQNS---APYVQTYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVG 77 (329)
T ss_pred CeEEEEEEeeCCCC---CCeEEEEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchh
Confidence 46899999999852 8999999998631 889999985 6899999988 884
Q ss_pred ---------------eEEeeccCCCCCCCCCceEEEEEeccc-------ccccccccchhhhcchhcccCCchhhhcccc
Q psy5785 99 ---------------TFAIYRWNPDKPDEKPTMQEYKVDLNN-------QLNFSARSSHATAISNAQYLQSLDDRKKLDG 156 (340)
Q Consensus 99 ---------------tl~I~r~~p~lp~~~PvikDLvVD~s~-------~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~ 156 (340)
+++|+|+ ++||++|||+||+++ +++|+.. ......+.+.+|++++.+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~i~iePl-----~~~pvikDLvVD~~~~~~k~~~v~p~~~~--~~~~~~~~e~~~~p~~~~~~~~ 150 (329)
T PRK12577 78 SELARLSDSNSGAIPEITIAPL-----GNMPVIKDLVVDMSSFWQNLEAVDPYVST--AARQVPEREFLQTPEERSKLDQ 150 (329)
T ss_pred hhhccccccccCCCCeEEEEEC-----CCCCccccceeccHHHHHHHHhccCcccc--CCCCCCcccccCCHHHHHHHHH
Confidence 3455664 579999999999987 3556543 1112233478899999999999
Q ss_pred cccCccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhc-------cCCC---ccccccccCC
Q psy5785 157 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQ-------LKDP---FSVYSKIDAN 221 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~-------l~~~---~~c~~~~~~~ 221 (340)
...||.||+|.++||+++.| .+|+||++++++|||..|+||+.+++|++. ++.+ ..|...|+++
T Consensus 151 ~~~Ci~CG~C~s~CP~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~ 224 (329)
T PRK12577 151 TGNCILCGACYSECNAREVN-PEFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPME 224 (329)
T ss_pred hhhCcccCcccccCCCCCcC-cCcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCC
Confidence 99999999999999999988 579999999999999999999988888875 3333 4555778875
No 24
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=99.96 E-value=1.2e-29 Score=242.62 Aligned_cols=151 Identities=27% Similarity=0.438 Sum_probs=118.9
Q ss_pred CCcceEEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-ccee-
Q psy5785 45 PAKYKTFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKT- 99 (340)
Q Consensus 45 ~~~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~t- 99 (340)
++++++|+||||||+. .||||+|+|+... |+||++|++ |+|.|||++. +|.|
T Consensus 5 ~~~~~~~~i~R~~~~~---~~~~~~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~t~ 81 (279)
T PRK12576 5 PEKEVIFKVKRYDPEK---GSWWQEYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACKTL 81 (279)
T ss_pred CCcEEEEEEEecCCCC---CCeEEEEEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEeccccCc
Confidence 3678999999999963 5999999998531 799999876 6899999988 8853
Q ss_pred -----------EEeeccCCCCCCCCCceEEEEEecccc-------cccccccchhhhcchhcccCCchhhhcccccccCc
Q psy5785 100 -----------FAIYRWNPDKPDEKPTMQEYKVDLNNQ-------LNFSARSSHATAISNAQYLQSLDDRKKLDGLYECI 161 (340)
Q Consensus 100 -----------l~I~r~~p~lp~~~PvikDLvVD~s~~-------~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI 161 (340)
++|+|+ .+||++|||+||++++ ++|+..+... .-...+..|++++.+++.....||
T Consensus 82 v~~~~~~~~~~~tiePl-----~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~-~~~~~~~~~~p~~~~~~~~~~~CI 155 (279)
T PRK12576 82 VLDVAKKYNSVITIEPM-----DYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEV-LEGKAEHRLKPEDQKELWKFAQCI 155 (279)
T ss_pred HHHhhcCCCCcEEEEEC-----CCCceeecceechHHHHHHHHhccceeccCccC-CCCccccccCHHHHHHhhcchhCc
Confidence 456664 4699999999999873 4455321000 001125678899999999999999
Q ss_pred cCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhh
Q psy5785 162 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 205 (340)
Q Consensus 162 ~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl 205 (340)
.||+|.++||+++.+ .+|+||++++++|||.+|+||....+|+
T Consensus 156 ~CG~C~~~CP~~~~~-~~flgP~~l~~a~r~~~d~rd~~~~~rl 198 (279)
T PRK12576 156 WCGLCVSACPVVAID-PEFLGPAAHAKGYRFLADPRDTITEERM 198 (279)
T ss_pred ccCcccccCCCcccc-CCcCCHHHHHHHHHHhcCccccchHHHH
Confidence 999999999999887 5799999999999999999986544443
No 25
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=99.96 E-value=1.7e-29 Score=235.19 Aligned_cols=147 Identities=46% Similarity=0.837 Sum_probs=117.3
Q ss_pred EEEEEecCCCCCCCCCceeeeccccc-h------------------hhhhhhccc-----ccccccCCcc-ccee-----
Q psy5785 50 TFAIYRWNPDKPDEKPTMQEYKTAKN-I------------------RSFQLSAAA-----SSAVPAEKPA-KYKT----- 99 (340)
Q Consensus 50 ~~~I~R~~P~~~~~~p~~q~Y~v~~~-~------------------lafr~sCre-----cam~iNG~p~-ac~t----- 99 (340)
||+||||||+. +.+|||++|+|+.. . ++||++|++ |+|.|||++. +|.|
T Consensus 1 ~~~v~r~~~~~-~~~~~~~~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~~ 79 (232)
T PRK05950 1 TFKIYRYNPDV-DANPRMQTYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISDL 79 (232)
T ss_pred CeEEEecCCCC-CCCceeEEEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhHc
Confidence 68999999974 67899999999865 2 788999876 5799999997 8854
Q ss_pred ----EEeeccCCCCCCCCCceEEEEEecccc-------cccccccchhhhcchhcccCCchhhhcccccccCccCccccc
Q psy5785 100 ----FAIYRWNPDKPDEKPTMQEYKVDLNNQ-------LNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCST 168 (340)
Q Consensus 100 ----l~I~r~~p~lp~~~PvikDLvVD~s~~-------~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~C~s 168 (340)
++|+|+ .+||++|||+||++.+ ++|+..+. .. ...+..|++++.+++..+..||.||.|.+
T Consensus 80 ~~~~~tiepl-----~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~ 151 (232)
T PRK05950 80 KKGKIVIRPL-----PGLPVIKDLVVDMTQFYAQYRSIKPYLINDT--PP-PARERLQSPEDREKLDGLYECILCACCST 151 (232)
T ss_pred CCCeEEEEEC-----CCCCeeeeceeehHHHHHHHHhccCeecCCC--CC-CchhccCCHHHHHHHHhHHhccccccccc
Confidence 366664 4699999999999873 44443210 00 12245678888888889999999999999
Q ss_pred CCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhh
Q psy5785 169 SCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 205 (340)
Q Consensus 169 ~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl 205 (340)
+||++..++++|+||++|+++|||..|+||+..++|+
T Consensus 152 ~CP~~~~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~ 188 (232)
T PRK05950 152 SCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERL 188 (232)
T ss_pred cCCccccCCCCCCCHHHHHHHHHHhhCCccchhHHHH
Confidence 9999988877799999999999999999887655554
No 26
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=99.94 E-value=1.7e-27 Score=220.09 Aligned_cols=145 Identities=39% Similarity=0.774 Sum_probs=112.8
Q ss_pred EEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-ccee---------
Q psy5785 53 IYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKT--------- 99 (340)
Q Consensus 53 I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~t--------- 99 (340)
|+||||+. +.+||||+|+|+... ++||.+|+. |+|.|||++. +|.|
T Consensus 1 i~R~~~~~-~~~~~~~~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~~ 79 (220)
T TIGR00384 1 VLRFNPDV-DEKPHLQSYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQPV 79 (220)
T ss_pred CcCcCCCC-CCCceeEEEEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCCc
Confidence 78999964 668999999998531 789999875 6899999988 8843
Q ss_pred EEeeccCCCCCCCCCceEEEEEeccc-------ccccccccchhhhcchhcccCCchhhhcccccccCccCcccccCCCc
Q psy5785 100 FAIYRWNPDKPDEKPTMQEYKVDLNN-------QLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPS 172 (340)
Q Consensus 100 l~I~r~~p~lp~~~PvikDLvVD~s~-------~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~C~s~CP~ 172 (340)
++|+|+ .+||++|||+||++. +.+|+.. ........+.++++++.+++.....||.||+|+++||+
T Consensus 80 ~~iepl-----~~~pvikDLvvD~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~ 152 (220)
T TIGR00384 80 MKIEPL-----PNLPVIKDLVVDMGPFYAKLEAIKPYLIR--KSQPEPEGEFLQTPEQREKLDQLSGCILCGCCYSSCPA 152 (220)
T ss_pred EEEeeC-----CCCceeeeeeechHHHHHHHHhcCCeecC--CCCCCccccccCCHHHHHHHhhhhhccccccccccCCC
Confidence 456664 469999999999985 3445432 11011122456778888888899999999999999999
Q ss_pred cccCCCccCChHHHHHHHHHhhCCcchhHHHhhh
Q psy5785 173 YWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLN 206 (340)
Q Consensus 173 ~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~ 206 (340)
++.++ +|+||+++++++|+..|+||+...+|+.
T Consensus 153 ~~~~~-~~~gp~~~~~~~r~~~d~~~~~~~~r~~ 185 (220)
T TIGR00384 153 FWWNP-EFLGPAALTAAYRFLIDSRDHATKDRLE 185 (220)
T ss_pred CccCC-CCcCHHHHHHHHHHhcCCCccchHHHHH
Confidence 98874 6999999999999999999876555543
No 27
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=99.90 E-value=3.3e-23 Score=211.07 Aligned_cols=168 Identities=29% Similarity=0.545 Sum_probs=144.7
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
.|++|+||+|+. + .|++++|.|+.++ +.+|++ ++..++.. .... +.+.++| +.||+|... +
T Consensus 4 ~~~~i~r~~~~~-~-~~~~~~~~v~~~~-~~tvl~--al~~~~~~-----~~~~--l~~~~~C~~g~Cg~C~v~-----v 66 (486)
T PRK06259 4 ITITVKRFDPEK-D-EPHFESYEVPVKE-GMTVLD--ALEYINKT-----YDAN--IAFRSSCRAGQCGSCAVT-----I 66 (486)
T ss_pred EEEEEEecCCCC-C-CceeEEEEEeCCC-CChHHH--HHHHhchh-----cCCC--ceecCCCCCCCCCCCEEE-----E
Confidence 678999999865 3 6999999999887 678988 77766542 2233 6778899 889999987 7
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCCCCceEEEeCCCCceeeecccChhHHHHHHHhcCC
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQP 255 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~p 255 (340)
||. . .++|.+.+.++ ++|+|++ ||++||||||+++|+++++++++
T Consensus 67 ~G~---------------------------~----~laC~~~~~~~---~~i~~~~-~~~~~~~v~d~~~~~~~~~~~~~ 111 (486)
T PRK06259 67 NGE---------------------------P----VLACKTEVEDG---MIIEPLD-FPVIKDLIVDREPYYKKLKSLRN 111 (486)
T ss_pred CCe---------------------------E----ecccccCCCCC---CEEEecC-CcchhccccccHHHHHHHHhhcC
Confidence 872 2 56899999875 9999999 99999999999999999999999
Q ss_pred cccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCc
Q psy5785 256 WLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEK 325 (340)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~ 325 (340)
|+.++.. .+|+|+++++++.+..||.||.|.++||++.. .+|+||+.+.+++++.+|++++.
T Consensus 112 ~~~~~~~------~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~--~~~~gp~~~~~~~~~~~~~~~~~ 173 (486)
T PRK06259 112 YLQRKNE------KITYPEDIEDIKKLRGCIECLSCVSTCPARKV--SDYPGPTFMRQLARFAFDPRDEG 173 (486)
T ss_pred CCCCCcc------CCCCHHHHHHHhCchhcccCccccccCCCCcc--ccCcCHHHHHHHHHHhhCCcchh
Confidence 9988642 56899999999999999999999999999975 47999999999999999998875
No 28
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=99.85 E-value=5e-22 Score=202.43 Aligned_cols=141 Identities=26% Similarity=0.440 Sum_probs=111.5
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-cceeE--
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKTF-- 100 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~tl-- 100 (340)
+++||+||||||+. + .||||+|+|+... +.|+++|+. |.|.|||++. +|.|.
T Consensus 2 ~~~~~~i~r~~~~~-~-~~~~~~~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~ 79 (486)
T PRK06259 2 KMITITVKRFDPEK-D-EPHFESYEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACKTEVE 79 (486)
T ss_pred ceEEEEEEecCCCC-C-CceeEEEEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccccCCC
Confidence 36899999999975 5 7999999998431 678999887 6789999987 88765
Q ss_pred ---EeeccCCCCCCCCCceEEEEEecccccccccccchhhhcc-hhcccCCchhhhcccccccCccCcccccCCCccccC
Q psy5785 101 ---AIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAIS-NAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWN 176 (340)
Q Consensus 101 ---~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~-~~e~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~n 176 (340)
+|++. . +|+++|++||++.+...+.. ...++. ..+.+|++++.+++..+..||.||.|.++||++..
T Consensus 80 ~~~~i~~~-----~-~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~- 150 (486)
T PRK06259 80 DGMIIEPL-----D-FPVIKDLIVDREPYYKKLKS--LRNYLQRKNEKITYPEDIEDIKKLRGCIECLSCVSTCPARKV- 150 (486)
T ss_pred CCCEEEec-----C-CcchhccccccHHHHHHHHh--hcCCCCCCccCCCCHHHHHHHhCchhcccCccccccCCCCcc-
Confidence 55552 3 89999999999874333322 111221 12456789999999999999999999999999987
Q ss_pred CCccCChHHHHHHHHHhhCCcch
Q psy5785 177 GEKYLGPAVLMQAYRWIIDSRDE 199 (340)
Q Consensus 177 g~~flGPa~l~qa~Rf~~DpRD~ 199 (340)
++|+||+++++++|+.+|++|+
T Consensus 151 -~~~~gp~~~~~~~~~~~~~~~~ 172 (486)
T PRK06259 151 -SDYPGPTFMRQLARFAFDPRDE 172 (486)
T ss_pred -ccCcCHHHHHHHHHHhhCCcch
Confidence 5799999999999999998775
No 29
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.84 E-value=1.8e-21 Score=162.48 Aligned_cols=104 Identities=30% Similarity=0.528 Sum_probs=84.1
Q ss_pred eEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCccccC
Q psy5785 99 TFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWWN 176 (340)
Q Consensus 99 tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~n 176 (340)
|++|+||+|+.+.+.|++++|.|+..+ .++|++ +|.+|+++ .+.+ +.++++| ..||+|++. +|
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~-~~tVLd--~L~~Ik~~-----~D~s--Lafr~sCr~giCGsCam~-----IN 65 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEP-GMTVLD--ALNYIKEE-----QDPS--LAFRYSCRSGICGSCAMR-----IN 65 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGS-TSBHHH--HHHHHHHH-----T-TT----B--SSSSSSSSTTEEE-----ET
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCC-CCcHHH--HHHHHHhc-----cCCC--eEEEecCCCCCCCCCEEE-----EC
Confidence 688999998543358999999999997 779999 99999987 5666 9999999 999999999 99
Q ss_pred CCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCCC----CceEEEeCCCCceeeecccChhHHHH
Q psy5785 177 GEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAND----KVSKIYPLPHMYVVKDLVPDMNNFYA 248 (340)
Q Consensus 177 g~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~~----~~~~I~pL~~~pvikDLvvD~~~~~~ 248 (340)
| .. .++|.+++.+.. +.|+||||++||||||||||+++||+
T Consensus 66 G---------------------------~~----~LAC~t~v~~~~~~~~~~i~IePL~~fpVirDLvVD~~~f~e 110 (110)
T PF13085_consen 66 G---------------------------RP----RLACKTQVDDLIEKFGNVITIEPLPNFPVIRDLVVDMSPFFE 110 (110)
T ss_dssp T---------------------------EE----EEGGGSBGGGCTTSETBEEEEEESTTSBEEETTEEETHHHHH
T ss_pred C---------------------------ce----ecceeeEchhccCCCcceEEEEECCCCCcceeCceeChHHcC
Confidence 9 45 788999999873 25999999999999999999999986
No 30
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.70 E-value=3.2e-18 Score=142.93 Aligned_cols=72 Identities=24% Similarity=0.432 Sum_probs=54.5
Q ss_pred EEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-ccee------
Q psy5785 50 TFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKT------ 99 (340)
Q Consensus 50 ~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~t------ 99 (340)
||+||||||+.++++|++|+|+|+... |+||+|||+ |||+|||+|+ ||.|
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~~ 80 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDLI 80 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGCT
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhcc
Confidence 799999999765569999999998642 899999999 5899999999 9954
Q ss_pred ------EEeeccCCCCCCCCCceEEEEEecccc
Q psy5785 100 ------FAIYRWNPDKPDEKPTMQEYKVDLNNQ 126 (340)
Q Consensus 100 ------l~I~r~~p~lp~~~PvikDLvVD~s~~ 126 (340)
++|+|+ .+||++|||+||++++
T Consensus 81 ~~~~~~i~IePL-----~~fpVirDLvVD~~~f 108 (110)
T PF13085_consen 81 EKFGNVITIEPL-----PNFPVIRDLVVDMSPF 108 (110)
T ss_dssp TSETBEEEEEES-----TTSBEEETTEEETHHH
T ss_pred CCCcceEEEEEC-----CCCCcceeCceeChHH
Confidence 466775 4699999999999863
No 31
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=98.22 E-value=1.1e-06 Score=87.81 Aligned_cols=50 Identities=20% Similarity=0.521 Sum_probs=38.1
Q ss_pred cCCchhhhcccccccCccCcccccCCCccccCCCccCChHHHHHHHHHhh
Q psy5785 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWII 194 (340)
Q Consensus 145 ~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~ 194 (340)
.+++++.+....+..|+.||.|..+||++...+.++.||.+.+..+|..+
T Consensus 10 ~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~ 59 (407)
T PRK11274 10 RDTPEGEEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVL 59 (407)
T ss_pred cCChhhhHhHHHHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHh
Confidence 44455444456677899999999999999988888999988766654433
No 32
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=97.48 E-value=3.5e-05 Score=55.87 Aligned_cols=16 Identities=38% Similarity=1.105 Sum_probs=8.6
Q ss_pred hhhhhcccccccCCCc
Q psy5785 283 YECILCACCSTSCPSY 298 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~ 298 (340)
+.|+.||.|+.+||+.
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 8999999999999986
No 33
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=97.18 E-value=0.00036 Score=69.80 Aligned_cols=55 Identities=18% Similarity=0.469 Sum_probs=47.1
Q ss_pred cccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCC
Q psy5785 268 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSR 322 (340)
Q Consensus 268 ~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~R 322 (340)
+..|++++.+..+.+..|+.||.|..+||++...+..+.||...+.+++.+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~ 62 (407)
T PRK11274 8 FIRDTPEGEEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGA 62 (407)
T ss_pred cccCChhhhHhHHHHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccC
Confidence 4578888888888899999999999999999877778999999888888777654
No 34
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=97.14 E-value=0.00045 Score=68.72 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=42.1
Q ss_pred cccCccCcccccCCCccccCCCccCChHHH-HHHHHHhhCCcchhHHHhhhccCCCccccccccCC
Q psy5785 157 LYECILCACCSTSCPSYWWNGEKYLGPAVL-MQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN 221 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ng~~flGPa~l-~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~ 221 (340)
+..||.||.|.++||++..+ ..|.||..+ .+..|+.+|..+ ...+.+..-..+-.|...|+.+
T Consensus 6 ~~~Ci~Cg~C~~~CP~~~~~-~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~C~~C~~C~~~CP~~ 69 (396)
T PRK11168 6 FDSCIKCTVCTTACPVARVN-PLYPGPKQAGPDGERLRLKDGA-LYDESLKYCSNCKRCEVACPSG 69 (396)
T ss_pred hhhcCCCCCCCccCCCcccC-CCCCChhhhccHHHHHhccchh-hcCCCCCcCcCcCccCcccCCC
Confidence 56699999999999999887 469999988 566677665211 1111112112355666778864
No 35
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=97.13 E-value=0.00016 Score=53.22 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=11.8
Q ss_pred hchhhhhhcccccccCCCcc
Q psy5785 280 DGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~ 299 (340)
+.++.|+.||.|..+||+..
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~l 60 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQGL 60 (61)
T ss_dssp TTTTT--S--HHHHH-TT--
T ss_pred cccccCcCcCcCcccccCCC
Confidence 56899999999999999874
No 36
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=97.04 E-value=0.00012 Score=73.83 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=19.1
Q ss_pred hhchhhhhhcccccccCCCcccC
Q psy5785 279 LDGLYECILCACCSTSCPSYWWN 301 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~~~ 301 (340)
.+....|.+||.|..+||+..+.
T Consensus 354 ~~~~~~c~lcg~C~evCPv~Ipl 376 (459)
T COG1139 354 GDLPYACSLCGACTEVCPVKIPL 376 (459)
T ss_pred cccchhhccccCCCCcCCCCCCH
Confidence 34578899999999999998653
No 37
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=96.76 E-value=0.0012 Score=64.92 Aligned_cols=30 Identities=33% Similarity=0.791 Sum_probs=22.5
Q ss_pred cccccCccCcccccCCCccccCCCccCChHHH
Q psy5785 155 DGLYECILCACCSTSCPSYWWNGEKYLGPAVL 186 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~~~ng~~flGPa~l 186 (340)
.....|..||-|.++||++..+ ....|..-
T Consensus 6 ~~~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr 35 (388)
T COG0247 6 ESLDKCVHCGFCTNVCPSYRAT--EALSPRGR 35 (388)
T ss_pred HHHHhcCCCCcccCcCCCcccc--CCCCCchH
Confidence 4467799999999999999775 34555443
No 38
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=96.21 E-value=0.001 Score=47.86 Aligned_cols=18 Identities=33% Similarity=0.918 Sum_probs=14.4
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
....|+.||.|+.+||+.
T Consensus 36 ~~~~C~~Cg~C~~~CP~~ 53 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTG 53 (55)
T ss_dssp TGGG--TTCHHHHHSTTT
T ss_pred CCCccccHhHHHHHcchh
Confidence 578899999999999985
No 39
>PRK13984 putative oxidoreductase; Provisional
Probab=96.11 E-value=0.0025 Score=67.09 Aligned_cols=22 Identities=23% Similarity=0.741 Sum_probs=18.3
Q ss_pred hhchhhhhhcccccccCCCccc
Q psy5785 279 LDGLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~~ 300 (340)
......|+.||.|+.+||....
T Consensus 181 ~~~~~~C~~Cg~C~~~CP~~~~ 202 (604)
T PRK13984 181 MQEAARCVECGICTDTCPAHMD 202 (604)
T ss_pred HHhhhhhcCCCcccccCCCCCC
Confidence 3456889999999999999753
No 40
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=95.99 E-value=0.005 Score=61.50 Aligned_cols=28 Identities=36% Similarity=0.748 Sum_probs=24.0
Q ss_pred cccCccCcccccCCCccccCCCccCChHH
Q psy5785 157 LYECILCACCSTSCPSYWWNGEKYLGPAV 185 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ng~~flGPa~ 185 (340)
...||.||.|..+||++..++ .|.||..
T Consensus 4 ~~~Ci~Cg~C~~~Cp~~~~~~-~~~g~~~ 31 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAKANP-LYPGPKQ 31 (397)
T ss_pred hhhCCCCCCCcccCcCccccC-CccCccc
Confidence 457999999999999999884 5888865
No 41
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=95.86 E-value=0.0077 Score=61.60 Aligned_cols=37 Identities=30% Similarity=0.699 Sum_probs=29.4
Q ss_pred ccccccCccCcccccCCCccccC-----CCccCChHHHHHHH
Q psy5785 154 LDGLYECILCACCSTSCPSYWWN-----GEKYLGPAVLMQAY 190 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~~n-----g~~flGPa~l~qa~ 190 (340)
++....||.||.|..+||++..- +..|.||.+.+..+
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~ 330 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSP 330 (432)
T ss_pred hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHH
Confidence 66788899999999999998642 34699999776433
No 42
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=95.80 E-value=0.0033 Score=65.07 Aligned_cols=24 Identities=33% Similarity=0.765 Sum_probs=20.5
Q ss_pred HHhhchhhhhhcccccccCCCccc
Q psy5785 277 KKLDGLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 277 ~~~~~~~~CIlCg~C~saCP~~~~ 300 (340)
.+.+.+.+||+||+|..+||+...
T Consensus 398 ~~~~~l~dCIECg~Ca~vCPs~ip 421 (529)
T COG4656 398 EEEHNLLDCIECGACAYVCPSNIP 421 (529)
T ss_pred HHHHHhhhhhhhCcchhcCCCCCC
Confidence 445678999999999999999864
No 43
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=95.54 E-value=0.0052 Score=61.08 Aligned_cols=20 Identities=35% Similarity=0.936 Sum_probs=17.4
Q ss_pred chhhhhhcccccccCCCccc
Q psy5785 281 GLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~ 300 (340)
....|..||.|..+||+...
T Consensus 305 g~~~CvgCGrC~~~CP~~I~ 324 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYIS 324 (344)
T ss_pred chhhCcCcCccccccCCCCC
Confidence 45789999999999999863
No 44
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=95.48 E-value=0.018 Score=59.30 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=23.4
Q ss_pred hchhhhhh--cccccccCCCcccCCCccccHHHHHHHHHHh
Q psy5785 280 DGLYECIL--CACCSTSCPSYWWNGEKYLGPAVLMQAYRWI 318 (340)
Q Consensus 280 ~~~~~CIl--Cg~C~saCP~~~~~~~~flGPa~l~ka~r~~ 318 (340)
..+.+|+. ||+|+.+||+.. .|++.+|+.
T Consensus 410 ~~~~~C~EedCG~CsyVCPski----------pL~q~iR~~ 440 (448)
T PRK05352 410 LGALELDEEDLALCTFVCPGKY----------EYGPILRDG 440 (448)
T ss_pred cCchhcCccccCCCccCCCCCc----------hHHHHHHHH
Confidence 56889999 999999999985 456666664
No 45
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=95.25 E-value=0.011 Score=58.88 Aligned_cols=39 Identities=31% Similarity=0.612 Sum_probs=30.6
Q ss_pred chhhhhhcccccccCCCcccCCCccccHHHH-HHHHHHhcC
Q psy5785 281 GLYECILCACCSTSCPSYWWNGEKYLGPAVL-MQAYRWIID 320 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~~~~~flGPa~l-~ka~r~~~D 320 (340)
.+..||.||.|.++||++..++ .|.||..+ .+..++.++
T Consensus 5 ~~~~Ci~Cg~C~~~CP~~~~~~-~~~g~~~~~~~~~~~~~~ 44 (396)
T PRK11168 5 SFDSCIKCTVCTTACPVARVNP-LYPGPKQAGPDGERLRLK 44 (396)
T ss_pred chhhcCCCCCCCccCCCcccCC-CCCChhhhccHHHHHhcc
Confidence 4678999999999999998654 58899887 455566544
No 46
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=95.07 E-value=0.011 Score=63.75 Aligned_cols=20 Identities=40% Similarity=1.002 Sum_probs=17.5
Q ss_pred chhhhhhcccccccCCCccc
Q psy5785 281 GLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~ 300 (340)
.+..|+.||+|..+||....
T Consensus 407 ~~~~CieCG~C~~vCPs~Ip 426 (695)
T PRK05035 407 NLFDCIECGACAYVCPSNIP 426 (695)
T ss_pred ChhhccccCcccccCCCCCc
Confidence 56789999999999999854
No 47
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.98 E-value=0.005 Score=37.32 Aligned_cols=18 Identities=39% Similarity=0.971 Sum_probs=15.9
Q ss_pred hchhhhhhcccccccCCC
Q psy5785 280 DGLYECILCACCSTSCPS 297 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~ 297 (340)
.++..||-||+|+.+||+
T Consensus 5 iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 5 IDLERCIGCGACEVACPV 22 (22)
T ss_pred EccccccCchhHHHhhCc
Confidence 467899999999999985
No 48
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=94.86 E-value=0.018 Score=58.86 Aligned_cols=37 Identities=30% Similarity=0.729 Sum_probs=29.1
Q ss_pred HHhhchhhhhhcccccccCCCcccCC-----CccccHHHHHH
Q psy5785 277 KKLDGLYECILCACCSTSCPSYWWNG-----EKYLGPAVLMQ 313 (340)
Q Consensus 277 ~~~~~~~~CIlCg~C~saCP~~~~~~-----~~flGPa~l~k 313 (340)
+++..+.+||.||.|..+||++...+ ..|.||.....
T Consensus 287 ~~~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~ 328 (432)
T TIGR00273 287 TEFREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVW 328 (432)
T ss_pred hhhhhHhhCCCCCCccccCcchhccCccccccccCChHHHHH
Confidence 34778999999999999999986432 35899986543
No 49
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=94.51 E-value=0.0078 Score=64.75 Aligned_cols=29 Identities=31% Similarity=0.601 Sum_probs=22.6
Q ss_pred hhhhhhcccccccCCCcccCCCccccHHH
Q psy5785 282 LYECILCACCSTSCPSYWWNGEKYLGPAV 310 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~~~~~flGPa~ 310 (340)
.++|..||.|+.+||+.......++|-+.
T Consensus 191 ~SSCVsCG~CvtVCP~nALmek~m~g~ag 219 (978)
T COG3383 191 ESSCVSCGACVTVCPVNALMEKSMLGEAG 219 (978)
T ss_pred cccccccCccceecchhhhhhhhhhcccc
Confidence 58899999999999998665555665443
No 50
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=94.47 E-value=0.006 Score=55.91 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=54.8
Q ss_pred ccccCccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCC---ccccccccCC-CCceEEEeCC
Q psy5785 156 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDP---FSVYSKIDAN-DKVSKIYPLP 231 (340)
Q Consensus 156 ~~~~CI~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~---~~c~~~~~~~-~~~~~I~pL~ 231 (340)
.+..|+.||.|.++||+... .+ -+|.-|.|-+++...- ....-+.++-+ ..|+..|+.+ .....|-=||
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~--t~-y~pR~ii~~~~~g~~d----~il~~~~lW~C~tCytC~eRCPr~v~i~~vv~~lR 109 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRF--TD-YSPRKIIRKARLGLVD----LILSSESLWACVTCYTCTERCPRGVKIVEVVKALR 109 (195)
T ss_pred hHhHhhccCcccCCCCCccc--CC-CCHHHHHHHHHcccHH----HHhcCCcceeeeechhhhhhCCCCCCHHHHHHHHH
Confidence 46669999999999999865 22 4788888777774421 11112345544 4555678886 2223334477
Q ss_pred CCceeeecccChhHHHHH
Q psy5785 232 HMYVVKDLVPDMNNFYAQ 249 (340)
Q Consensus 232 ~~pvikDLvvD~~~~~~~ 249 (340)
++-+-+.|+.+|-.+++.
T Consensus 110 ~~a~k~G~~~~~~~~~~~ 127 (195)
T COG1150 110 NIAVKEGLIEPMLKAHRE 127 (195)
T ss_pred HHHHHhcccccchhHHHH
Confidence 777777777765555443
No 51
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=94.28 E-value=0.016 Score=32.86 Aligned_cols=15 Identities=40% Similarity=1.132 Sum_probs=13.8
Q ss_pred hhhhhcccccccCCC
Q psy5785 283 YECILCACCSTSCPS 297 (340)
Q Consensus 283 ~~CIlCg~C~saCP~ 297 (340)
.+|+.|+.|+.+||.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 579999999999996
No 52
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=93.72 E-value=0.026 Score=42.14 Aligned_cols=18 Identities=33% Similarity=0.837 Sum_probs=15.8
Q ss_pred cCccCcccccCCCccccC
Q psy5785 159 ECILCACCSTSCPSYWWN 176 (340)
Q Consensus 159 ~CI~CG~C~s~CP~~~~n 176 (340)
.|+.||.|+.+||+..+.
T Consensus 1 ~C~~C~~C~~~CP~~AI~ 18 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAIS 18 (67)
T ss_pred CCcchhHHHHhCcHhhcc
Confidence 499999999999998664
No 53
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=93.72 E-value=0.016 Score=31.90 Aligned_cols=14 Identities=36% Similarity=1.070 Sum_probs=12.9
Q ss_pred hhhcccccccCCCc
Q psy5785 285 CILCACCSTSCPSY 298 (340)
Q Consensus 285 CIlCg~C~saCP~~ 298 (340)
|++|+.|+.+||+.
T Consensus 1 C~~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 1 CTGCGACVEVCPTG 14 (15)
T ss_pred CCCchHHHHHhcCC
Confidence 88999999999985
No 54
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=93.64 E-value=0.1 Score=45.18 Aligned_cols=18 Identities=39% Similarity=0.866 Sum_probs=15.9
Q ss_pred ccCccCcccccCCCcccc
Q psy5785 158 YECILCACCSTSCPSYWW 175 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~~~~ 175 (340)
..||.||.|.++||++..
T Consensus 2 ~~Ci~CG~C~~~CP~~~~ 19 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRR 19 (144)
T ss_pred ccccCCCCCcCcCCCccc
Confidence 469999999999999754
No 55
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=93.59 E-value=0.033 Score=61.21 Aligned_cols=22 Identities=23% Similarity=0.674 Sum_probs=18.5
Q ss_pred hhhhhcccccccCCCcccCCCc
Q psy5785 283 YECILCACCSTSCPSYWWNGEK 304 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~~~~~~ 304 (340)
..|+.||.|.++||++......
T Consensus 204 ~~C~~CG~Cv~VCPvGAL~~k~ 225 (819)
T PRK08493 204 LDCSFCGECIAVCPVGALSSSD 225 (819)
T ss_pred ccccccCcHHHhCCCCccccCc
Confidence 5899999999999999765443
No 56
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=93.49 E-value=0.023 Score=34.48 Aligned_cols=18 Identities=39% Similarity=0.971 Sum_probs=15.1
Q ss_pred cccccCccCcccccCCCc
Q psy5785 155 DGLYECILCACCSTSCPS 172 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~ 172 (340)
.....||.|++|..+||.
T Consensus 5 iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 5 IDLERCIGCGACEVACPV 22 (22)
T ss_pred EccccccCchhHHHhhCc
Confidence 346679999999999984
No 57
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=93.39 E-value=0.061 Score=38.66 Aligned_cols=17 Identities=47% Similarity=1.341 Sum_probs=12.2
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
+.+||.||.|.++||++
T Consensus 2 ~~~Ci~Cg~C~~~CP~~ 18 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVY 18 (57)
T ss_dssp HHC--S-SHHHHCSHHH
T ss_pred HHHccCccChHHHChhh
Confidence 57899999999999954
No 58
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=93.37 E-value=0.065 Score=49.25 Aligned_cols=34 Identities=29% Similarity=0.610 Sum_probs=26.9
Q ss_pred chhhhhhcccccccCCCcccCCCccccHHHHHHHHHH
Q psy5785 281 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRW 317 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~ 317 (340)
.+..|+.||.|+++||++... =.+|.-|.+..+.
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~t---~y~pR~ii~~~~~ 70 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRFT---DYSPRKIIRKARL 70 (195)
T ss_pred hHhHhhccCcccCCCCCcccC---CCCHHHHHHHHHc
Confidence 466799999999999999762 3578887777655
No 59
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=93.04 E-value=0.059 Score=30.53 Aligned_cols=15 Identities=40% Similarity=1.132 Sum_probs=13.5
Q ss_pred ccCccCcccccCCCc
Q psy5785 158 YECILCACCSTSCPS 172 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~ 172 (340)
..|+.|+.|+.+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 369999999999996
No 60
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=92.78 E-value=0.036 Score=56.63 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=16.8
Q ss_pred cccccCccCcccccCCCcc
Q psy5785 155 DGLYECILCACCSTSCPSY 173 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~ 173 (340)
.....||.||.|..+||..
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~ 378 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMN 378 (435)
T ss_pred ccCCcCcCccchhhhCccc
Confidence 5678899999999999975
No 61
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=92.76 E-value=0.029 Score=34.54 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=15.7
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
+..+|+.||.|+.+||..
T Consensus 5 d~~~C~~Cg~C~~~Cp~~ 22 (24)
T PF12837_consen 5 DPDKCIGCGDCVRVCPEG 22 (24)
T ss_pred ChhhCcChhHHHHhcchh
Confidence 457899999999999974
No 62
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=92.61 E-value=0.049 Score=54.45 Aligned_cols=30 Identities=33% Similarity=0.689 Sum_probs=24.1
Q ss_pred chhhhhhcccccccCCCcccCCCccccHHHH
Q psy5785 281 GLYECILCACCSTSCPSYWWNGEKYLGPAVL 311 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~~~~~flGPa~l 311 (340)
.+..||.||.|.++||++..++ .|.||...
T Consensus 3 ~~~~Ci~Cg~C~~~Cp~~~~~~-~~~g~~~~ 32 (397)
T TIGR03379 3 SFESCIKCTVCTVYCPVAKANP-LYPGPKQA 32 (397)
T ss_pred chhhCCCCCCCcccCcCccccC-CccCcccC
Confidence 3688999999999999997653 57777653
No 63
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=91.96 E-value=0.04 Score=33.75 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=15.4
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+...|+.||.|..+||...
T Consensus 4 d~~~C~~Cg~C~~~CP~~a 22 (24)
T PF00037_consen 4 DPDKCIGCGRCVEACPFDA 22 (24)
T ss_dssp ETTTSSS-THHHHHSTTSS
T ss_pred chHHCCCcchhhhhccccc
Confidence 3578999999999999863
No 64
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=90.78 E-value=0.12 Score=37.71 Aligned_cols=31 Identities=32% Similarity=0.686 Sum_probs=20.8
Q ss_pred hhhhcccccccCCCcccCCCccccHHHHHHHHHH
Q psy5785 284 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRW 317 (340)
Q Consensus 284 ~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~ 317 (340)
.|+.||.|+.+||++..++. + |..+.+++.+
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~-~--~~~~~~~~~~ 31 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPD-E--PRSPMRAIYL 31 (61)
T ss_dssp T----STTGGGSHHHHHCTT-T--HHHHHHHHHH
T ss_pred CCCCCCcCcccCCCccccCc-c--HHHHHHHHHH
Confidence 49999999999999987543 2 7777777765
No 65
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=89.66 E-value=0.12 Score=52.65 Aligned_cols=34 Identities=32% Similarity=0.780 Sum_probs=26.7
Q ss_pred HhhchhhhhhcccccccCCCcccCC-----CccccHHHH
Q psy5785 278 KLDGLYECILCACCSTSCPSYWWNG-----EKYLGPAVL 311 (340)
Q Consensus 278 ~~~~~~~CIlCg~C~saCP~~~~~~-----~~flGPa~l 311 (340)
.|...-.||-||+|...||++...+ ..|.||...
T Consensus 303 ~~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~ 341 (459)
T COG1139 303 EFREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGV 341 (459)
T ss_pred HHHHHHHhhcchHhhhcChhhhhccCeecccccCCcccc
Confidence 3445678999999999999985533 678998764
No 66
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=89.24 E-value=0.26 Score=48.93 Aligned_cols=20 Identities=35% Similarity=0.909 Sum_probs=17.5
Q ss_pred chhhhhhcccccccCCCccc
Q psy5785 281 GLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~ 300 (340)
....|..||.|..+||+...
T Consensus 299 G~~~CvgCGrC~~~CP~~id 318 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYIS 318 (334)
T ss_pred CccccCCcCchhhhCCCCCC
Confidence 46789999999999999863
No 67
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=88.88 E-value=0.16 Score=44.08 Aligned_cols=17 Identities=41% Similarity=0.948 Sum_probs=15.3
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|.++||++.
T Consensus 2 ~~Ci~CG~C~~~CP~~~ 18 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGR 18 (144)
T ss_pred ccccCCCCCcCcCCCcc
Confidence 47999999999999974
No 68
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=88.02 E-value=0.11 Score=32.00 Aligned_cols=17 Identities=35% Similarity=0.876 Sum_probs=14.6
Q ss_pred ccccCccCcccccCCCc
Q psy5785 156 GLYECILCACCSTSCPS 172 (340)
Q Consensus 156 ~~~~CI~CG~C~s~CP~ 172 (340)
....|+.||.|+.+||.
T Consensus 5 d~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 5 DPDKCIGCGDCVRVCPE 21 (24)
T ss_pred ChhhCcChhHHHHhcch
Confidence 35569999999999995
No 69
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=87.33 E-value=0.16 Score=31.11 Aligned_cols=17 Identities=35% Similarity=0.823 Sum_probs=13.8
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...|+.||.|..+||..
T Consensus 5 ~~~C~~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 5 PDKCIGCGRCVEACPFD 21 (24)
T ss_dssp TTTSSS-THHHHHSTTS
T ss_pred hHHCCCcchhhhhcccc
Confidence 45699999999999975
No 70
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=86.82 E-value=0.17 Score=35.90 Aligned_cols=18 Identities=33% Similarity=0.789 Sum_probs=7.8
Q ss_pred cccccCccCcccccCCCc
Q psy5785 155 DGLYECILCACCSTSCPS 172 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~ 172 (340)
.....|+.||.|+.+||.
T Consensus 4 id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 4 IDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp --TT------TTGGG-TT
T ss_pred cCcccCcCCcChHHHccc
Confidence 345569999999999998
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=86.55 E-value=0.26 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=19.3
Q ss_pred Hhhchhhhhhcc---cccccCCCccc
Q psy5785 278 KLDGLYECILCA---CCSTSCPSYWW 300 (340)
Q Consensus 278 ~~~~~~~CIlCg---~C~saCP~~~~ 300 (340)
.......|+.|| -|..+||....
T Consensus 203 ~~~ea~rC~~C~~~~~C~~~CP~~~~ 228 (639)
T PRK12809 203 ATYESDRCVYCAEKANCNWHCPLHNA 228 (639)
T ss_pred HHHHHHHHhCCCCCCcccccCCCCCc
Confidence 345788999999 79999999864
No 72
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=86.00 E-value=0.29 Score=34.59 Aligned_cols=18 Identities=33% Similarity=0.789 Sum_probs=8.2
Q ss_pred hchhhhhhcccccccCCC
Q psy5785 280 DGLYECILCACCSTSCPS 297 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~ 297 (340)
.+...|+.||.|+.+||.
T Consensus 4 id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 4 IDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp --TT------TTGGG-TT
T ss_pred cCcccCcCCcChHHHccc
Confidence 356789999999999999
No 73
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=85.49 E-value=0.23 Score=35.42 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=12.8
Q ss_pred hhhhcccccccCCCccc
Q psy5785 284 ECILCACCSTSCPSYWW 300 (340)
Q Consensus 284 ~CIlCg~C~saCP~~~~ 300 (340)
+||.||.|+.+||....
T Consensus 1 kCi~Cg~C~~~CP~~~~ 17 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVI 17 (55)
T ss_dssp C--TTTHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCe
Confidence 59999999999999865
No 74
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=85.15 E-value=0.42 Score=46.35 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=16.2
Q ss_pred cccCccCcccccCCCcccc
Q psy5785 157 LYECILCACCSTSCPSYWW 175 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ 175 (340)
...|..|+.|+.+||+..+
T Consensus 158 ~~~C~~C~~C~~aCPt~AI 176 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQAL 176 (282)
T ss_pred CCCCccHHHHHHhcCcccc
Confidence 4579999999999998655
No 75
>PLN00071 photosystem I subunit VII; Provisional
Probab=84.09 E-value=0.28 Score=38.07 Aligned_cols=28 Identities=29% Similarity=0.806 Sum_probs=22.7
Q ss_pred hhhhhcccccccCCCcccCCCccccHHH
Q psy5785 283 YECILCACCSTSCPSYWWNGEKYLGPAV 310 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~~~~~~flGPa~ 310 (340)
..|+.||.|..+||........|.||..
T Consensus 46 ~~C~~Cg~C~~~CP~~Ai~~~~~~~~~~ 73 (81)
T PLN00071 46 EDCVGCKRCESACPTDFLSVRVYLGHET 73 (81)
T ss_pred CcCcChhhHHhhcCCccceEeeeecchh
Confidence 4699999999999988655567888754
No 76
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=82.81 E-value=0.96 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=19.7
Q ss_pred HHhhchhhhhhcc---cccccCCCccc
Q psy5785 277 KKLDGLYECILCA---CCSTSCPSYWW 300 (340)
Q Consensus 277 ~~~~~~~~CIlCg---~C~saCP~~~~ 300 (340)
+..+....|+.|| -|..+||....
T Consensus 219 ~a~~~~~rc~~C~~~~~C~~~CP~~~~ 245 (654)
T PRK12769 219 QAQREASRCLKCGEHSICEWTCPLHNH 245 (654)
T ss_pred HHHHHHHhhhcCCCCCCccccCCCCCc
Confidence 4456789999998 49999999964
No 77
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=82.77 E-value=0.43 Score=36.49 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=18.5
Q ss_pred hhchhhhhhcccccccCCCcc
Q psy5785 279 LDGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~ 299 (340)
.+....|+-||.|+.+||+..
T Consensus 46 ~~~~~~CVgCgrCv~~CP~~I 66 (69)
T PF13746_consen 46 RYGEGDCVGCGRCVRVCPAGI 66 (69)
T ss_pred hcCCccCCCcChHhhhcCCCC
Confidence 346889999999999999985
No 78
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=81.56 E-value=0.61 Score=35.66 Aligned_cols=20 Identities=30% Similarity=0.717 Sum_probs=17.8
Q ss_pred ccccccCccCcccccCCCcc
Q psy5785 154 LDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~ 173 (340)
.+....|+.||.|+.+||+.
T Consensus 46 ~~~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 46 RYGEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred hcCCccCCCcChHhhhcCCC
Confidence 45788899999999999986
No 79
>PRK02651 photosystem I subunit VII; Provisional
Probab=80.32 E-value=0.36 Score=37.35 Aligned_cols=28 Identities=32% Similarity=0.820 Sum_probs=22.4
Q ss_pred hhhhhcccccccCCCcccCCCccccHHH
Q psy5785 283 YECILCACCSTSCPSYWWNGEKYLGPAV 310 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~~~~~~flGPa~ 310 (340)
..|..||.|..+||.....-..|+||+.
T Consensus 46 ~~C~~Cg~C~~~CP~~ai~~~~~~~~~~ 73 (81)
T PRK02651 46 EDCVGCKRCETACPTDFLSIRVYLGAET 73 (81)
T ss_pred CcCCChhhhhhhcCCCceEEEEEeccce
Confidence 4799999999999987554467888864
No 80
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=80.26 E-value=0.53 Score=49.18 Aligned_cols=24 Identities=38% Similarity=0.930 Sum_probs=20.7
Q ss_pred hhhcccccccCccCcccccCCCcc
Q psy5785 150 DRKKLDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 150 ~~~~l~~~~~CI~CG~C~s~CP~~ 173 (340)
+....+.+..||+||.|.-+||+.
T Consensus 396 ~e~~~~~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 396 DEEEEHNLLDCIECGACAYVCPSN 419 (529)
T ss_pred hHHHHHHhhhhhhhCcchhcCCCC
Confidence 445577899999999999999997
No 81
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=80.21 E-value=0.6 Score=33.09 Aligned_cols=17 Identities=29% Similarity=0.806 Sum_probs=11.3
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
...|+.||.|+.+||+.
T Consensus 35 ~~~C~~C~~C~~~CP~~ 51 (52)
T PF12838_consen 35 PDKCTGCGACVEVCPTG 51 (52)
T ss_dssp GGG----SHHHHHTTTS
T ss_pred chhCcCcChhhhhCcCc
Confidence 57799999999999985
No 82
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=79.36 E-value=0.45 Score=33.75 Aligned_cols=17 Identities=35% Similarity=0.931 Sum_probs=10.9
Q ss_pred hhhhcccccccCCCccc
Q psy5785 284 ECILCACCSTSCPSYWW 300 (340)
Q Consensus 284 ~CIlCg~C~saCP~~~~ 300 (340)
+|+.||.|+.+||....
T Consensus 1 ~C~~C~~C~~~CP~~~i 17 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAI 17 (52)
T ss_dssp C-SS--HHHHH-TTHHC
T ss_pred CCCCcCchHHhcCcccc
Confidence 59999999999998743
No 83
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=78.60 E-value=0.49 Score=36.68 Aligned_cols=28 Identities=29% Similarity=0.822 Sum_probs=22.8
Q ss_pred hhhhhcccccccCCCcccCCCccccHHH
Q psy5785 283 YECILCACCSTSCPSYWWNGEKYLGPAV 310 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~~~~~~flGPa~ 310 (340)
..|+.||.|..+||.....-..|.|+..
T Consensus 45 ~~C~~Cg~C~~~CP~~ai~~~~~~~~~~ 72 (80)
T TIGR03048 45 EDCVGCKRCESACPTDFLSVRVYLGAET 72 (80)
T ss_pred CcCcChhHHHHhcCcccCEEEEecCchh
Confidence 5799999999999987655567888764
No 84
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=78.51 E-value=0.67 Score=41.93 Aligned_cols=19 Identities=37% Similarity=0.898 Sum_probs=17.2
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
++..||-||-|+++||+..
T Consensus 93 n~grCIfCg~C~e~CPt~A 111 (172)
T COG1143 93 NLGRCIFCGLCVEVCPTGA 111 (172)
T ss_pred ccccccccCchhhhCchhh
Confidence 4788999999999999984
No 85
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=78.18 E-value=0.42 Score=48.38 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=16.1
Q ss_pred CCCceeeecccChhHHHHHH
Q psy5785 231 PHMYVVKDLVPDMNNFYAQY 250 (340)
Q Consensus 231 ~~~pvikDLvvD~~~~~~~~ 250 (340)
.+..++++++.+.+.++++.
T Consensus 288 ~gp~ii~~I~~~L~~~l~~~ 307 (420)
T PRK08318 288 YGFRIVEDMISGLSHYMDEK 307 (420)
T ss_pred CCchhHHHHHHHHHHHHHHc
Confidence 36788999988888887776
No 86
>KOG3256|consensus
Probab=78.18 E-value=0.62 Score=42.06 Aligned_cols=19 Identities=32% Similarity=0.934 Sum_probs=17.0
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
++..||-||-|+.+||+..
T Consensus 148 DmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 148 DMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred cceeeeeecchhhhCCccc
Confidence 4788999999999999974
No 87
>CHL00065 psaC photosystem I subunit VII
Probab=77.94 E-value=0.49 Score=36.77 Aligned_cols=27 Identities=30% Similarity=0.835 Sum_probs=21.2
Q ss_pred hhhhhcccccccCCCcccCCCccccHH
Q psy5785 283 YECILCACCSTSCPSYWWNGEKYLGPA 309 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~~~~~~flGPa 309 (340)
..|+.||.|..+||.....-..|.|+.
T Consensus 46 ~~C~~C~~C~~~CP~~Ai~~~~~~~~~ 72 (81)
T CHL00065 46 EDCVGCKRCESACPTDFLSVRVYLGHE 72 (81)
T ss_pred CcCCChhhhhhhcCccccEEEEEecce
Confidence 459999999999999765445677753
No 88
>PRK07118 ferredoxin; Validated
Probab=77.91 E-value=0.5 Score=45.72 Aligned_cols=19 Identities=26% Similarity=0.600 Sum_probs=15.9
Q ss_pred cccCccCcccccCCCcccc
Q psy5785 157 LYECILCACCSTSCPSYWW 175 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ 175 (340)
.+.||.||.|..+||+..+
T Consensus 138 ~~~CigCg~C~~aCp~~AI 156 (280)
T PRK07118 138 SYGCLGLGSCVAACPFDAI 156 (280)
T ss_pred CCCCcChhHHHHhCCccCe
Confidence 3679999999999997544
No 89
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=77.85 E-value=1.6 Score=43.00 Aligned_cols=40 Identities=28% Similarity=0.650 Sum_probs=30.1
Q ss_pred hhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcC
Q psy5785 279 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIID 320 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D 320 (340)
...+..|..||.|.++||++... ....|.......|-...
T Consensus 5 ~~~~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr~~~~r~~~~ 44 (388)
T COG0247 5 FESLDKCVHCGFCTNVCPSYRAT--EALSPRGRIVLVREVLR 44 (388)
T ss_pred hHHHHhcCCCCcccCcCCCcccc--CCCCCchHHHHHHHHHh
Confidence 34578999999999999999764 57777776666554433
No 90
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=77.68 E-value=0.76 Score=35.99 Aligned_cols=18 Identities=33% Similarity=0.768 Sum_probs=15.5
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|+++||...
T Consensus 28 ~~~Ci~Cg~C~~~CP~~a 45 (99)
T COG1145 28 AEKCIGCGLCVKVCPTGA 45 (99)
T ss_pred ccccCCCCCchhhCCHHH
Confidence 455999999999999973
No 91
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=77.01 E-value=1 Score=35.25 Aligned_cols=18 Identities=33% Similarity=0.803 Sum_probs=16.2
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|..+||...
T Consensus 62 ~~~C~~C~~C~~~Cp~~a 79 (99)
T COG1145 62 PDLCVLCGACLKVCPVDA 79 (99)
T ss_pred cccCccccchHhhCCcCC
Confidence 578999999999999975
No 92
>COG1146 Ferredoxin [Energy production and conversion]
Probab=76.91 E-value=0.81 Score=34.44 Aligned_cols=18 Identities=39% Similarity=0.837 Sum_probs=16.4
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
...+|+.||+|+.+||+.
T Consensus 39 ~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 39 RPEECIDCGLCELACPVG 56 (68)
T ss_pred ccccCccchhhhhhCCcc
Confidence 467899999999999998
No 93
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=76.79 E-value=1.1 Score=33.28 Aligned_cols=16 Identities=38% Similarity=0.945 Sum_probs=11.1
Q ss_pred hhhhhhcccccccCCC
Q psy5785 282 LYECILCACCSTSCPS 297 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~ 297 (340)
...|+.||.|+.+||+
T Consensus 38 ~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 38 PDKCIGCGLCVKVCPV 53 (59)
T ss_dssp -TT--S-SCCCCCSSS
T ss_pred cccCcCcCcccccCCC
Confidence 3689999999999996
No 94
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=74.86 E-value=0.96 Score=33.55 Aligned_cols=17 Identities=35% Similarity=0.841 Sum_probs=11.1
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
...||.||.|+.+||..
T Consensus 5 ~~~Ci~Cg~C~~~Cp~~ 21 (59)
T PF14697_consen 5 EDKCIGCGKCVRACPDG 21 (59)
T ss_dssp TTT----SCCCHHCCCC
T ss_pred cccccChhhHHhHcCcc
Confidence 47899999999999964
No 95
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=74.34 E-value=1.1 Score=51.57 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=22.7
Q ss_pred ccccCccCcccccCCCccccCCCccCChHHHH
Q psy5785 156 GLYECILCACCSTSCPSYWWNGEKYLGPAVLM 187 (340)
Q Consensus 156 ~~~~CI~CG~C~s~CP~~~~ng~~flGPa~l~ 187 (340)
....|+.||.|+.+||...++ -.+++|..+.
T Consensus 681 ~~~~Ci~Cg~C~~vCP~~ai~-~~~~~~~~~~ 711 (1165)
T TIGR02176 681 VPDNCIQCNQCAFVCPHAAIR-PKLADEEELE 711 (1165)
T ss_pred ccccCCCccchHHhcChhhcc-ccccchhhhh
Confidence 345699999999999998775 3455555443
No 96
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=74.07 E-value=2 Score=44.46 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=23.0
Q ss_pred hchhhhhh--cccccccCCCcccCCCccccHHHHHHHHHHhc
Q psy5785 280 DGLYECIL--CACCSTSCPSYWWNGEKYLGPAVLMQAYRWII 319 (340)
Q Consensus 280 ~~~~~CIl--Cg~C~saCP~~~~~~~~flGPa~l~ka~r~~~ 319 (340)
....+|+. ||+|+.+||+.. .|.+..|..+
T Consensus 409 lg~~ecieedCG~CsyVCPSki----------~l~q~iR~~l 440 (447)
T TIGR01936 409 LGALEVDEEDFALCTFVDPSKY----------EYGSIVRESL 440 (447)
T ss_pred CCCcccCccccccCceECCCCc----------hHHHHHHHHH
Confidence 35788999 999999999985 3456666544
No 97
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=72.21 E-value=1.5 Score=35.77 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=17.4
Q ss_pred cccccccCccCcccccCCCcc
Q psy5785 153 KLDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 153 ~l~~~~~CI~CG~C~s~CP~~ 173 (340)
.......|+.||.|+.+||..
T Consensus 11 v~id~~~Ci~C~~Cv~aCP~~ 31 (103)
T PRK09626 11 VWVDESRCKACDICVSVCPAG 31 (103)
T ss_pred eEECcccccCCcchhhhcChh
Confidence 345677899999999999965
No 98
>PLN00071 photosystem I subunit VII; Provisional
Probab=72.07 E-value=1.2 Score=34.40 Aligned_cols=28 Identities=29% Similarity=0.806 Sum_probs=21.9
Q ss_pred ccCccCcccccCCCccccCCCccCChHH
Q psy5785 158 YECILCACCSTSCPSYWWNGEKYLGPAV 185 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~~~~ng~~flGPa~ 185 (340)
..|+.||.|..+||+.-+.-..|.||..
T Consensus 46 ~~C~~Cg~C~~~CP~~Ai~~~~~~~~~~ 73 (81)
T PLN00071 46 EDCVGCKRCESACPTDFLSVRVYLGHET 73 (81)
T ss_pred CcCcChhhHHhhcCCccceEeeeecchh
Confidence 4599999999999986554466777754
No 99
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=70.06 E-value=1 Score=33.36 Aligned_cols=17 Identities=35% Similarity=0.868 Sum_probs=15.1
Q ss_pred hhhhcccccccCCCccc
Q psy5785 284 ECILCACCSTSCPSYWW 300 (340)
Q Consensus 284 ~CIlCg~C~saCP~~~~ 300 (340)
.|+.||.|+++||+...
T Consensus 1 ~C~~C~~C~~~CP~~AI 17 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAI 17 (67)
T ss_pred CCcchhHHHHhCcHhhc
Confidence 49999999999999864
No 100
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=69.83 E-value=3 Score=43.05 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=25.3
Q ss_pred ccccccCcc--CcccccCCCccccCCCccCChHHHHHHHHHhhC
Q psy5785 154 LDGLYECIL--CACCSTSCPSYWWNGEKYLGPAVLMQAYRWIID 195 (340)
Q Consensus 154 l~~~~~CI~--CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~D 195 (340)
.....+|++ ||+|.-+||+.. -|.|.+|+..+
T Consensus 409 ~~~~~~C~EedCG~CsyVCPski----------pL~q~iR~~k~ 442 (448)
T PRK05352 409 ALGALELDEEDLALCTFVCPGKY----------EYGPILRDGLD 442 (448)
T ss_pred HcCchhcCccccCCCccCCCCCc----------hHHHHHHHHHH
Confidence 477899999 999999999972 26777777553
No 101
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=69.06 E-value=1.7 Score=39.47 Aligned_cols=18 Identities=33% Similarity=0.934 Sum_probs=15.4
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|+.+||...
T Consensus 101 ~~~Ci~Cg~Cv~aCP~~A 118 (183)
T TIGR00403 101 FGVCIFCGNCVEYCPTNC 118 (183)
T ss_pred cccccCcCchhhhcCCCC
Confidence 456999999999999863
No 102
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=68.63 E-value=1.9 Score=39.13 Aligned_cols=19 Identities=32% Similarity=0.875 Sum_probs=16.8
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|+.+||...
T Consensus 60 ~~~kCi~Cg~C~~aCP~~a 78 (183)
T TIGR00403 60 EFDKCIACEVCVRVCPINL 78 (183)
T ss_pred CcccCcCcCChhhhCCCCc
Confidence 5678999999999999873
No 103
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=68.19 E-value=1.8 Score=40.25 Aligned_cols=24 Identities=29% Similarity=0.647 Sum_probs=19.9
Q ss_pred hcccccccCccCcccccCCCcccc
Q psy5785 152 KKLDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 152 ~~l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
.+..++..|+.||.|+.+||+.-+
T Consensus 47 ~e~~F~~~Ci~Cg~Cv~aCP~~ai 70 (213)
T TIGR00397 47 PEQDFLAACVRCGLCVEACPYDIL 70 (213)
T ss_pred cchhhcccccchhHHHHhCCcccc
Confidence 446778999999999999998543
No 104
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=68.07 E-value=1.8 Score=34.04 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=17.2
Q ss_pred hchhhhhhcccccccCCCcc
Q psy5785 280 DGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~ 299 (340)
.....|+.||.|+.+||...
T Consensus 18 i~~~~Ci~C~~Cv~~CP~~~ 37 (91)
T TIGR02936 18 IDQEKCIGCGRCYKVCGRDV 37 (91)
T ss_pred ECHhHCCCcchHHHHcChhh
Confidence 35688999999999999764
No 105
>COG1146 Ferredoxin [Energy production and conversion]
Probab=67.68 E-value=2.1 Score=32.16 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=17.6
Q ss_pred ccccccCccCcccccCCCccc
Q psy5785 154 LDGLYECILCACCSTSCPSYW 174 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~ 174 (340)
.....+|+.||.|...||+.-
T Consensus 37 ~~~~e~C~~C~~C~~~CP~~a 57 (68)
T COG1146 37 VARPEECIDCGLCELACPVGA 57 (68)
T ss_pred EeccccCccchhhhhhCCcce
Confidence 455677999999999999963
No 106
>CHL00065 psaC photosystem I subunit VII
Probab=67.17 E-value=1.5 Score=34.09 Aligned_cols=26 Identities=31% Similarity=0.868 Sum_probs=19.7
Q ss_pred ccCccCcccccCCCccccCCCccCCh
Q psy5785 158 YECILCACCSTSCPSYWWNGEKYLGP 183 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~~~~ng~~flGP 183 (340)
..|+.||.|..+||+..+.=..|.|+
T Consensus 46 ~~C~~C~~C~~~CP~~Ai~~~~~~~~ 71 (81)
T CHL00065 46 EDCVGCKRCESACPTDFLSVRVYLGH 71 (81)
T ss_pred CcCCChhhhhhhcCccccEEEEEecc
Confidence 46999999999999854433556665
No 107
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=66.31 E-value=1.9 Score=35.77 Aligned_cols=19 Identities=32% Similarity=0.903 Sum_probs=16.1
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|+.||.|+.+||....
T Consensus 81 ~~~C~~Cg~Cv~~CP~~al 99 (122)
T TIGR01971 81 FGRCIFCGLCEEACPTDAI 99 (122)
T ss_pred cccCCCCCchhhhCCCccc
Confidence 4569999999999998743
No 108
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=66.04 E-value=2.6 Score=45.95 Aligned_cols=19 Identities=42% Similarity=1.125 Sum_probs=16.7
Q ss_pred cccccCccCcccccCCCcc
Q psy5785 155 DGLYECILCACCSTSCPSY 173 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~ 173 (340)
..+..||+||+|..+||+.
T Consensus 406 ~~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 406 YNLFDCIECGACAYVCPSN 424 (695)
T ss_pred cChhhccccCcccccCCCC
Confidence 4567899999999999986
No 109
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=65.93 E-value=2.1 Score=38.16 Aligned_cols=18 Identities=33% Similarity=0.910 Sum_probs=15.7
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
....|+.||.|+.+||..
T Consensus 57 ~~~~Ci~Cg~C~~aCP~~ 74 (167)
T CHL00014 57 EFDKCIACEVCVRVCPID 74 (167)
T ss_pred ccccCCCcCcHHHhCCCC
Confidence 357899999999999986
No 110
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=64.93 E-value=2.4 Score=32.79 Aligned_cols=18 Identities=28% Similarity=0.650 Sum_probs=15.4
Q ss_pred ccccCccCcccccCCCcc
Q psy5785 156 GLYECILCACCSTSCPSY 173 (340)
Q Consensus 156 ~~~~CI~CG~C~s~CP~~ 173 (340)
.+..||.||.|..+||..
T Consensus 6 Drd~Cigcg~C~~~aPdv 23 (68)
T COG1141 6 DRDTCIGCGACLAVAPDV 23 (68)
T ss_pred chhhccccchhhhcCCcc
Confidence 356799999999999985
No 111
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=64.83 E-value=2 Score=37.89 Aligned_cols=20 Identities=35% Similarity=0.879 Sum_probs=16.5
Q ss_pred hchhhhhhcccccccCCCcc
Q psy5785 280 DGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~ 299 (340)
.....|+.||.|..+||...
T Consensus 55 ~~~~~Ci~C~~C~~~CP~~a 74 (164)
T PRK05888 55 NGEERCIACKLCAAICPADA 74 (164)
T ss_pred CCCccCCcccChHHHcCccc
Confidence 34568999999999999763
No 112
>PRK02651 photosystem I subunit VII; Provisional
Probab=64.83 E-value=2 Score=33.06 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=16.9
Q ss_pred hchhhhhhcccccccCCCcc
Q psy5785 280 DGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~ 299 (340)
.....|+.||.|..+||...
T Consensus 6 ~~~~~Ci~C~~C~~~CP~~~ 25 (81)
T PRK02651 6 KIYDTCIGCTQCVRACPLDV 25 (81)
T ss_pred cccccCCCcchHHHHCCccc
Confidence 34688999999999999764
No 113
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=63.75 E-value=2.8 Score=41.91 Aligned_cols=17 Identities=35% Similarity=0.870 Sum_probs=15.6
Q ss_pred chhhhhhcccccccCCC
Q psy5785 281 GLYECILCACCSTSCPS 297 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~ 297 (340)
....||.||+|..+||+
T Consensus 224 ~~~rCi~Cg~C~~~CPt 240 (344)
T PRK15055 224 YDSRCIACGRCNFVCPT 240 (344)
T ss_pred HHhhCccCccccccCCc
Confidence 36799999999999999
No 114
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=63.71 E-value=2.3 Score=34.72 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=16.5
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|+.+||...
T Consensus 14 d~~~Ci~C~~Cv~aCP~~a 32 (103)
T PRK09626 14 DESRCKACDICVSVCPAGV 32 (103)
T ss_pred CcccccCCcchhhhcChhh
Confidence 5678999999999999864
No 115
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=63.44 E-value=2.4 Score=38.38 Aligned_cols=19 Identities=32% Similarity=0.870 Sum_probs=16.3
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|+.+||...
T Consensus 36 d~~~Ci~Cg~Cv~aCP~~A 54 (181)
T PRK08222 36 MPSQCIACGACTCACPANA 54 (181)
T ss_pred ChhhCcchhHHHHhCCccc
Confidence 5688999999999999864
No 116
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=63.43 E-value=2.2 Score=33.48 Aligned_cols=19 Identities=32% Similarity=0.808 Sum_probs=16.1
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+...|+.||.|+.+||...
T Consensus 68 ~~~~C~~Cg~C~~~CP~~A 86 (91)
T TIGR02936 68 NPGNCIGCGACARVCPKKC 86 (91)
T ss_pred CCccCcChhhhhhhCCHhH
Confidence 3568999999999999863
No 117
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=62.98 E-value=2.5 Score=37.61 Aligned_cols=18 Identities=33% Similarity=0.934 Sum_probs=15.3
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|..+||...
T Consensus 98 ~~~C~~Cg~C~~~CP~~A 115 (167)
T CHL00014 98 FGVCIFCGNCVEYCPTNC 115 (167)
T ss_pred CCcCcCccchHhhcCcCc
Confidence 346999999999999863
No 118
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=62.68 E-value=2.8 Score=34.40 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=16.0
Q ss_pred ccccccCccCcccccCCCcc
Q psy5785 154 LDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~ 173 (340)
......||+||.|..+||..
T Consensus 57 ~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 57 RFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred EEcCCCCCcchhhhhhcCCC
Confidence 44556699999999999764
No 119
>PRK10194 ferredoxin-type protein; Provisional
Probab=62.66 E-value=1.5 Score=38.69 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=16.0
Q ss_pred hchhhhhhcccccccCCCccc
Q psy5785 280 DGLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~~ 300 (340)
+....|+.||.|+.+||....
T Consensus 31 ~~~~~C~~Cg~C~~aCp~~~i 51 (163)
T PRK10194 31 HFLTHCTRCDACINACENNIL 51 (163)
T ss_pred HHhhhCcChhHHHHHcChhhc
Confidence 346778888888888887643
No 120
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=62.52 E-value=2.1 Score=33.13 Aligned_cols=28 Identities=29% Similarity=0.822 Sum_probs=21.2
Q ss_pred ccCccCcccccCCCccccCCCccCChHH
Q psy5785 158 YECILCACCSTSCPSYWWNGEKYLGPAV 185 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~~~~ng~~flGPa~ 185 (340)
..|+.||.|..+||+--+.-..|.||..
T Consensus 45 ~~C~~Cg~C~~~CP~~ai~~~~~~~~~~ 72 (80)
T TIGR03048 45 EDCVGCKRCESACPTDFLSVRVYLGAET 72 (80)
T ss_pred CcCcChhHHHHhcCcccCEEEEecCchh
Confidence 4699999999999985544356777653
No 121
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=62.08 E-value=2.9 Score=31.12 Aligned_cols=17 Identities=29% Similarity=0.637 Sum_probs=15.0
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...|+.||.|++.||.+
T Consensus 5 ~~~C~gcg~C~~~aP~v 21 (65)
T PF13459_consen 5 RDRCIGCGLCVELAPEV 21 (65)
T ss_pred cccCcCccHHHhhCCcc
Confidence 56799999999999974
No 122
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=62.01 E-value=6.5 Score=39.99 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.4
Q ss_pred chhhhhhcccccccCCCcccC
Q psy5785 281 GLYECILCACCSTSCPSYWWN 301 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~~ 301 (340)
....|..||.|+..||...++
T Consensus 65 ~a~~C~~Cg~C~~~CP~apPh 85 (389)
T PRK15033 65 LANLCHNCGACLHACQYAPPH 85 (389)
T ss_pred HHHhCcCcccccccCcCCCCc
Confidence 367899999999999995444
No 123
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=60.22 E-value=2.8 Score=35.00 Aligned_cols=20 Identities=30% Similarity=0.722 Sum_probs=17.0
Q ss_pred hchhhhhhcccccccCCCcc
Q psy5785 280 DGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~ 299 (340)
.....|+.||.|..+||...
T Consensus 39 i~~~~Ci~C~~C~~~CP~~a 58 (120)
T PRK08348 39 YDVDKCVGCRMCVTVCPAGV 58 (120)
T ss_pred ECcccCcCcccHHHHCCccc
Confidence 35689999999999999864
No 124
>PRK10194 ferredoxin-type protein; Provisional
Probab=59.82 E-value=2.2 Score=37.61 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=19.6
Q ss_pred hcccccccCccCcccccCCCcccc
Q psy5785 152 KKLDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 152 ~~l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
++.++...|+.||.|+.+||..-+
T Consensus 28 ~e~~~~~~C~~Cg~C~~aCp~~~i 51 (163)
T PRK10194 28 DESHFLTHCTRCDACINACENNIL 51 (163)
T ss_pred chHHHhhhCcChhHHHHHcChhhc
Confidence 335678889999999999998544
No 125
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=58.59 E-value=3.3 Score=34.00 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=16.5
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+...||.||.|.-+||...
T Consensus 59 d~e~CigCg~C~~~C~~~~ 77 (95)
T PRK15449 59 DYAGCLECGTCRILGLGSA 77 (95)
T ss_pred cCCCCCcchhhhhhcCCCC
Confidence 5688999999999998763
No 126
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=58.28 E-value=5.6 Score=41.14 Aligned_cols=32 Identities=25% Similarity=0.120 Sum_probs=23.7
Q ss_pred ccccccCcc--CcccccCCCccccCCCccCChHHHHHHHHHhhC
Q psy5785 154 LDGLYECIL--CACCSTSCPSYWWNGEKYLGPAVLMQAYRWIID 195 (340)
Q Consensus 154 l~~~~~CI~--CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~D 195 (340)
-....+|++ ||+|.-+||+... |.|..|..+|
T Consensus 408 ~lg~~ecieedCG~CsyVCPSki~----------l~q~iR~~l~ 441 (447)
T TIGR01936 408 RLGALEVDEEDFALCTFVDPSKYE----------YGSIVRESLD 441 (447)
T ss_pred HCCCcccCccccccCceECCCCch----------HHHHHHHHHH
Confidence 456788998 9999999999721 5566665554
No 127
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=58.21 E-value=3.9 Score=41.30 Aligned_cols=19 Identities=32% Similarity=0.831 Sum_probs=16.8
Q ss_pred cccccCccCcccccCCCcc
Q psy5785 155 DGLYECILCACCSTSCPSY 173 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~ 173 (340)
...++||+||.|...||..
T Consensus 348 g~as~CieCgqCl~~CPq~ 366 (391)
T COG1453 348 GKASDCIECGQCLEKCPQH 366 (391)
T ss_pred ccccccchhhhhhhcCCCc
Confidence 3478899999999999996
No 128
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=58.17 E-value=13 Score=37.61 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=28.3
Q ss_pred HHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHH
Q psy5785 274 DDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 316 (340)
Q Consensus 274 ~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r 316 (340)
+|...+ ...|-.||.|+.+||...++.-.---|..++++..
T Consensus 41 ~d~~~l--a~lChnC~~C~~~CPy~pPHef~v~~p~lma~~R~ 81 (372)
T TIGR02484 41 GDLRHL--AHLCHDCQSCWHDCQYAPPHAFAINLPATLADVRR 81 (372)
T ss_pred HHHHHH--HHHCcCcccccccCcCCCCccccCCHHHHHHHHHH
Confidence 444443 88999999999999997655323356666665553
No 129
>PRK06273 ferredoxin; Provisional
Probab=58.01 E-value=3.5 Score=36.98 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=17.3
Q ss_pred ccccccCccCcccccCCCcccc
Q psy5785 154 LDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
......|+.||.|..+||+..+
T Consensus 45 ~id~~~CigCg~C~~aCP~~AI 66 (165)
T PRK06273 45 KVFEELCIGCGGCANVCPTKAI 66 (165)
T ss_pred eECchhCcChhHHHHhcCccce
Confidence 3456679999999999996433
No 130
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=57.96 E-value=3.4 Score=42.34 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=17.5
Q ss_pred hchhhhhhcccccccCCCcc
Q psy5785 280 DGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~ 299 (340)
.....||.||.|+++||+..
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l 379 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNL 379 (435)
T ss_pred ccCCcCcCccchhhhCccch
Confidence 46789999999999999863
No 131
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=57.79 E-value=3.8 Score=36.19 Aligned_cols=18 Identities=33% Similarity=0.999 Sum_probs=15.6
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|+.+||...
T Consensus 96 ~~~C~~Cg~Cv~~CP~~A 113 (164)
T PRK05888 96 FGRCIFCGFCEEACPTDA 113 (164)
T ss_pred CCcCcccCcchhhcCcCc
Confidence 467999999999999864
No 132
>KOG3256|consensus
Probab=57.67 E-value=3.5 Score=37.34 Aligned_cols=19 Identities=32% Similarity=0.901 Sum_probs=15.9
Q ss_pred cccCccCcccccCCCcccc
Q psy5785 157 LYECILCACCSTSCPSYWW 175 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ 175 (340)
...||-||-|+++||+--+
T Consensus 149 mtkCIyCG~CqEaCPvdai 167 (212)
T KOG3256|consen 149 MTKCIYCGFCQEACPVDAI 167 (212)
T ss_pred ceeeeeecchhhhCCccce
Confidence 4569999999999999544
No 133
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=57.24 E-value=4.2 Score=36.62 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=19.9
Q ss_pred chhhhhhcccccccCCCcccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYWWNGEKY 305 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~~~~~f 305 (340)
+..+||.||.|+-+||.+......+
T Consensus 80 ~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 80 DEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred chhhccCcchhhhcCCcceEEEEee
Confidence 5688999999999999886543444
No 134
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=56.60 E-value=2.1 Score=39.70 Aligned_cols=19 Identities=32% Similarity=0.843 Sum_probs=16.7
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
+..|+.||.|+.+||....
T Consensus 52 ~~~Ci~Cg~Cv~aCP~~ai 70 (213)
T TIGR00397 52 LAACVRCGLCVEACPYDIL 70 (213)
T ss_pred cccccchhHHHHhCCcccc
Confidence 5899999999999998754
No 135
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=56.24 E-value=4.5 Score=36.60 Aligned_cols=19 Identities=37% Similarity=0.878 Sum_probs=16.5
Q ss_pred cccCccCcccccCCCcccc
Q psy5785 157 LYECILCACCSTSCPSYWW 175 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ 175 (340)
...||-||-|..+||+..+
T Consensus 94 ~grCIfCg~C~e~CPt~Al 112 (172)
T COG1143 94 LGRCIFCGLCVEVCPTGAL 112 (172)
T ss_pred cccccccCchhhhCchhhh
Confidence 4559999999999999765
No 136
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=56.13 E-value=4.6 Score=40.25 Aligned_cols=17 Identities=41% Similarity=1.030 Sum_probs=15.8
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
...||.||+|..+||.-
T Consensus 219 ~~rCi~C~~C~~~CPtC 235 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTC 235 (334)
T ss_pred HhhCCcCccccccCCce
Confidence 78999999999999985
No 137
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=55.91 E-value=4.9 Score=39.76 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=16.5
Q ss_pred ccccccCccCcccccCCCcc
Q psy5785 154 LDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~ 173 (340)
+.....|+.||.|.++||..
T Consensus 8 vi~~~~C~gCg~C~~~CP~~ 27 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIG 27 (341)
T ss_pred EECcccCcChHHHHHhCCHh
Confidence 44566799999999999964
No 138
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=55.53 E-value=3.7 Score=45.06 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=21.5
Q ss_pred ccccCccCcccccCCCccccCCCccCChHH
Q psy5785 156 GLYECILCACCSTSCPSYWWNGEKYLGPAV 185 (340)
Q Consensus 156 ~~~~CI~CG~C~s~CP~~~~ng~~flGPa~ 185 (340)
..++|..||.|+.+||+...-...++|=+.
T Consensus 190 ~~SSCVsCG~CvtVCP~nALmek~m~g~ag 219 (978)
T COG3383 190 NESSCVSCGACVTVCPVNALMEKSMLGEAG 219 (978)
T ss_pred ccccccccCccceecchhhhhhhhhhcccc
Confidence 478899999999999996432234555444
No 139
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=55.37 E-value=3.9 Score=33.94 Aligned_cols=18 Identities=33% Similarity=0.803 Sum_probs=15.7
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|..+||...
T Consensus 42 ~~~Ci~C~~C~~~CP~~a 59 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADA 59 (122)
T ss_pred cCcCcCcchhhhhcCHhH
Confidence 588999999999999653
No 140
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=55.29 E-value=4.4 Score=39.43 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=17.6
Q ss_pred hhchhhhhhcccccccCCCcc
Q psy5785 279 LDGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~ 299 (340)
.....+|+.|+.|..+||...
T Consensus 243 ~id~~~Ci~C~~C~~~CP~~a 263 (312)
T PRK14028 243 VIDHSKCIMCRKCWLYCPDDA 263 (312)
T ss_pred EECcccCcCcccccccCChhh
Confidence 336789999999999999763
No 141
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=55.07 E-value=3.2 Score=30.48 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=11.0
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...||.||.|...+|..
T Consensus 3 ~~~Ci~Cg~C~~~aP~v 19 (58)
T PF13370_consen 3 RDKCIGCGLCVEIAPDV 19 (58)
T ss_dssp TTT--S-SHHHHH-TTT
T ss_pred hhhCcCCChHHHhCcHh
Confidence 35699999999999994
No 142
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=54.86 E-value=3.9 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.884 Sum_probs=15.0
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|+.+||...
T Consensus 73 ~~C~~Cg~Cv~~CP~~A 89 (120)
T PRK08348 73 GRCVFCGQCVDVCPTGA 89 (120)
T ss_pred CcCcChhhhHHhCCcCc
Confidence 56999999999999864
No 143
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=54.82 E-value=3.5 Score=30.26 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=12.3
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...||.||.|...+|..-.
T Consensus 3 ~~~Ci~Cg~C~~~aP~vF~ 21 (58)
T PF13370_consen 3 RDKCIGCGLCVEIAPDVFD 21 (58)
T ss_dssp TTT--S-SHHHHH-TTTEE
T ss_pred hhhCcCCChHHHhCcHhee
Confidence 4689999999999998743
No 144
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=54.67 E-value=4 Score=38.94 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=19.5
Q ss_pred hcccccccCccCcccccCCCcccc
Q psy5785 152 KKLDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 152 ~~l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
.+..+...|+.||.|+.+||...+
T Consensus 53 ~e~~F~~~Ci~Cg~Cv~aCP~~aI 76 (254)
T PRK09476 53 NENDFLSACIRCGLCVQACPYDTL 76 (254)
T ss_pred cchhhhhhCcCchHHHHhCCcccc
Confidence 335678999999999999997544
No 145
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=54.47 E-value=4.3 Score=38.70 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=15.8
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|+.+||...
T Consensus 46 ~~~~C~~C~~C~~~Cp~~a 64 (295)
T TIGR02494 46 KENRCLGCGKCVEVCPAGT 64 (295)
T ss_pred ccccCCCCchhhhhCcccc
Confidence 4578999999999999864
No 146
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=54.00 E-value=6 Score=40.01 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=18.0
Q ss_pred hhhhhhcccccccCCCcccC
Q psy5785 282 LYECILCACCSTSCPSYWWN 301 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~~ 301 (340)
..+|+.||-|.+.||+....
T Consensus 350 as~CieCgqCl~~CPq~l~I 369 (391)
T COG1453 350 ASDCIECGQCLEKCPQHLDI 369 (391)
T ss_pred ccccchhhhhhhcCCCcCcH
Confidence 68899999999999999754
No 147
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=53.44 E-value=4.9 Score=33.14 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=14.8
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|..+||...
T Consensus 81 ~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09624 81 DYCKGCGICANECPTKA 97 (105)
T ss_pred hhCCCcCchhhhcCcCc
Confidence 46999999999999864
No 148
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=53.27 E-value=5.7 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.730 Sum_probs=18.2
Q ss_pred HHhhchhhhhhcccccccCCCc
Q psy5785 277 KKLDGLYECILCACCSTSCPSY 298 (340)
Q Consensus 277 ~~~~~~~~CIlCg~C~saCP~~ 298 (340)
+.++....|+.||.|..+||+.
T Consensus 393 eLl~~~~kCI~CG~Cv~aCP~~ 414 (784)
T TIGR00314 393 ELMELANKCTQCGNCVRTCPNS 414 (784)
T ss_pred HHhhhcccCCCcccchhhCCCC
Confidence 4455688999999999999986
No 149
>PRK06991 ferredoxin; Provisional
Probab=52.78 E-value=5.4 Score=38.53 Aligned_cols=16 Identities=31% Similarity=0.769 Sum_probs=14.8
Q ss_pred hhhhhcccccccCCCc
Q psy5785 283 YECILCACCSTSCPSY 298 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~ 298 (340)
..|+.||.|+.+||+.
T Consensus 115 ~~CigCg~Cv~vCP~~ 130 (270)
T PRK06991 115 DLCTGCDLCVPPCPVD 130 (270)
T ss_pred hhCCCchHHHhhCCcC
Confidence 5799999999999987
No 150
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=52.76 E-value=5.3 Score=35.98 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=17.4
Q ss_pred ccccccCccCcccccCCCcccc
Q psy5785 154 LDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
.-....||.||.|+.+||...+
T Consensus 78 ~V~~ekCiGC~~C~~aCPfGai 99 (165)
T COG1142 78 QVDEEKCIGCKLCVVACPFGAI 99 (165)
T ss_pred EEchhhccCcchhhhcCCcceE
Confidence 3445679999999999997544
No 151
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=52.46 E-value=4.7 Score=36.17 Aligned_cols=19 Identities=42% Similarity=0.912 Sum_probs=16.2
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|+.+||...
T Consensus 36 d~~~C~~C~~Cv~~CP~~a 54 (180)
T PRK12387 36 NPQQCIGCAACVNACPSNA 54 (180)
T ss_pred ChhhCcChhHHHHhcCccC
Confidence 5678999999999999763
No 152
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=52.41 E-value=4.2 Score=34.99 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=16.0
Q ss_pred ccccccCccCcccccCCCc
Q psy5785 154 LDGLYECILCACCSTSCPS 172 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~ 172 (340)
......|+.||.|..+||.
T Consensus 55 ~~d~~~Ci~C~~C~~~CP~ 73 (133)
T PRK09625 55 VHNNEICINCFNCWVYCPD 73 (133)
T ss_pred EEehhHCcChhhHHHhCCH
Confidence 4556789999999999984
No 153
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=51.80 E-value=5 Score=29.83 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=15.9
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|+.||.|+..||..-.
T Consensus 5 ~~~C~gcg~C~~~aP~vF~ 23 (65)
T PF13459_consen 5 RDRCIGCGLCVELAPEVFE 23 (65)
T ss_pred cccCcCccHHHhhCCccEE
Confidence 4689999999999996533
No 154
>PRK06273 ferredoxin; Provisional
Probab=51.77 E-value=4.5 Score=36.21 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=16.4
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|..+||+..
T Consensus 47 d~~~CigCg~C~~aCP~~A 65 (165)
T PRK06273 47 FEELCIGCGGCANVCPTKA 65 (165)
T ss_pred CchhCcChhHHHHhcCccc
Confidence 4568999999999999864
No 155
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=51.36 E-value=6.3 Score=43.22 Aligned_cols=20 Identities=25% Similarity=0.740 Sum_probs=17.0
Q ss_pred hhchhhhhhcccccccCCCc
Q psy5785 279 LDGLYECILCACCSTSCPSY 298 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~ 298 (340)
.+...+|+.||.|..+||+.
T Consensus 361 ~~~~~kCI~CG~Cv~aCP~~ 380 (731)
T cd01916 361 QELAAKCTDCGWCTRACPNS 380 (731)
T ss_pred HHhhhcCCCCCcccccCCCC
Confidence 44678899999999999986
No 156
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=51.19 E-value=5 Score=38.43 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=15.3
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
..+|+.||.|.++||...
T Consensus 241 ~~~C~~Cg~Cv~~CP~~A 258 (271)
T PRK09477 241 SGDCITCGRCIDVCSEDV 258 (271)
T ss_pred cccCcChhHHHhhcCccc
Confidence 356999999999999853
No 157
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=50.64 E-value=7.4 Score=40.52 Aligned_cols=26 Identities=31% Similarity=0.717 Sum_probs=21.6
Q ss_pred HHhhchhhhhhcccccccCCCcccCC
Q psy5785 277 KKLDGLYECILCACCSTSCPSYWWNG 302 (340)
Q Consensus 277 ~~~~~~~~CIlCg~C~saCP~~~~~~ 302 (340)
.-..++.+||.|+.|+-+|.+.|.+.
T Consensus 8 amv~nldKCIGChTCSvtCK~~WT~r 33 (492)
T TIGR01660 8 GMVLNLDKCIGCHTCSVTCKNVWTSR 33 (492)
T ss_pred eeEechhhccCCchhhccCcCccccC
Confidence 34557899999999999999998643
No 158
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=50.62 E-value=6 Score=35.77 Aligned_cols=19 Identities=32% Similarity=0.863 Sum_probs=15.8
Q ss_pred cccccCccCcccccCCCcc
Q psy5785 155 DGLYECILCACCSTSCPSY 173 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~ 173 (340)
.....|+.||.|+.+||+.
T Consensus 35 ~d~~~Ci~Cg~Cv~aCP~~ 53 (181)
T PRK08222 35 LMPSQCIACGACTCACPAN 53 (181)
T ss_pred eChhhCcchhHHHHhCCcc
Confidence 4466799999999999964
No 159
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=49.69 E-value=3.7 Score=40.63 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=17.2
Q ss_pred hhchhhhhhcccccccCCCc
Q psy5785 279 LDGLYECILCACCSTSCPSY 298 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~ 298 (340)
+.....|+.||.|..+||..
T Consensus 8 vi~~~~C~gCg~C~~~CP~~ 27 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIG 27 (341)
T ss_pred EECcccCcChHHHHHhCCHh
Confidence 45677999999999999975
No 160
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=49.48 E-value=6.5 Score=30.35 Aligned_cols=18 Identities=28% Similarity=0.715 Sum_probs=15.6
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
-..||-||.|..+||-.-
T Consensus 7 rd~Cigcg~C~~~aPdvF 24 (68)
T COG1141 7 RDTCIGCGACLAVAPDVF 24 (68)
T ss_pred hhhccccchhhhcCCcce
Confidence 367999999999999874
No 161
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=48.68 E-value=7.8 Score=42.73 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=17.6
Q ss_pred HhhchhhhhhcccccccCCCc
Q psy5785 278 KLDGLYECILCACCSTSCPSY 298 (340)
Q Consensus 278 ~~~~~~~CIlCg~C~saCP~~ 298 (340)
-.+....|+.||.|..+||+.
T Consensus 399 l~~eadrCI~CG~Cv~aCP~~ 419 (781)
T PRK00941 399 LKELAKKCTECGWCVRVCPNE 419 (781)
T ss_pred HHHhhhhCcCCCCccccCCCC
Confidence 344678999999999999986
No 162
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=48.50 E-value=5.4 Score=30.37 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=16.5
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.|+.|..+||...
T Consensus 23 ~~~~C~~C~~C~~~Cp~~a 41 (78)
T TIGR02179 23 DKEKCIKCKNCWLYCPEGA 41 (78)
T ss_pred cCCcCcChhHHHhhcCccc
Confidence 4688999999999999764
No 163
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=48.20 E-value=7.9 Score=37.62 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=17.5
Q ss_pred ccccccCccCcccccCCCcccc
Q psy5785 154 LDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
......||.|+.|..+||....
T Consensus 243 ~id~~~Ci~C~~C~~~CP~~ai 264 (312)
T PRK14028 243 VIDHSKCIMCRKCWLYCPDDAI 264 (312)
T ss_pred EECcccCcCcccccccCChhhh
Confidence 3456779999999999997533
No 164
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=48.06 E-value=6.1 Score=33.95 Aligned_cols=20 Identities=30% Similarity=0.540 Sum_probs=16.9
Q ss_pred hchhhhhhcccccccCCCcc
Q psy5785 280 DGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~ 299 (340)
.....|+.||.|..+||...
T Consensus 56 ~d~~~Ci~C~~C~~~CP~~a 75 (133)
T PRK09625 56 HNNEICINCFNCWVYCPDAA 75 (133)
T ss_pred EehhHCcChhhHHHhCCHhh
Confidence 35688999999999999663
No 165
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=46.93 E-value=7 Score=35.04 Aligned_cols=19 Identities=42% Similarity=0.926 Sum_probs=15.8
Q ss_pred cccccCccCcccccCCCcc
Q psy5785 155 DGLYECILCACCSTSCPSY 173 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~ 173 (340)
.....|+.||.|+.+||..
T Consensus 35 ~d~~~C~~C~~Cv~~CP~~ 53 (180)
T PRK12387 35 YNPQQCIGCAACVNACPSN 53 (180)
T ss_pred EChhhCcChhHHHHhcCcc
Confidence 3466799999999999964
No 166
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=46.83 E-value=6.4 Score=39.42 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=16.9
Q ss_pred chhhhhhcccccccCCCccc
Q psy5785 281 GLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~ 300 (340)
+..+|+.||.|..+||....
T Consensus 5 d~~kCi~Cg~Cv~~CP~~ai 24 (374)
T TIGR02512 5 DMSKCIGCGRCVRACTNVQI 24 (374)
T ss_pred chhhCCcChHhhhhCCHhhc
Confidence 45789999999999997753
No 167
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=45.80 E-value=4.6 Score=38.56 Aligned_cols=19 Identities=37% Similarity=0.836 Sum_probs=16.3
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|+.||.|+.+||....
T Consensus 58 ~~~Ci~Cg~Cv~aCP~~aI 76 (254)
T PRK09476 58 LSACIRCGLCVQACPYDTL 76 (254)
T ss_pred hhhCcCchHHHHhCCcccc
Confidence 4899999999999997643
No 168
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=45.71 E-value=6.4 Score=37.40 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=15.0
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
.+|+.||.|.++||...
T Consensus 234 ~~C~~Cg~Cv~~CP~~A 250 (255)
T TIGR02163 234 GDCTLCGRCIDVCHEDV 250 (255)
T ss_pred ccccchhHHHHhCCccc
Confidence 56999999999999863
No 169
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=45.48 E-value=7.2 Score=32.12 Aligned_cols=19 Identities=26% Similarity=0.640 Sum_probs=16.3
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.|+.|..+||...
T Consensus 49 d~~~Ci~C~~C~~~CP~~a 67 (105)
T PRK09624 49 NRDKCVRCYLCYIYCPEPA 67 (105)
T ss_pred ChhHCcChhhHHhhCCHhh
Confidence 4678999999999999763
No 170
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=45.17 E-value=7.2 Score=31.71 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.8
Q ss_pred ccccccCccCcccccCCCcc
Q psy5785 154 LDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~ 173 (340)
..+...|+.|+.|+.+||..
T Consensus 30 ~~~~~~C~~C~~C~~~CP~~ 49 (101)
T TIGR00402 30 SLFSAVCTRCGECASACENN 49 (101)
T ss_pred ccCcCcCcChhHHHHHcCcc
Confidence 45667899999999999964
No 171
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=44.47 E-value=8.4 Score=36.74 Aligned_cols=18 Identities=33% Similarity=0.781 Sum_probs=15.5
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|..+||...
T Consensus 81 ~~~C~~Cg~C~~~CP~~A 98 (295)
T TIGR02494 81 REKCTHCGKCTEACPSGA 98 (295)
T ss_pred hhhcCchhHhhccCcHhH
Confidence 467999999999999764
No 172
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=43.52 E-value=8.1 Score=31.40 Aligned_cols=19 Identities=32% Similarity=0.878 Sum_probs=16.0
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|+.||.|..+||....
T Consensus 65 ~~~C~~Cg~C~~~CP~~Ai 83 (101)
T TIGR00402 65 NAECDFCGKCAEACPTNAF 83 (101)
T ss_pred CccCcCccChhhHCCcccc
Confidence 3579999999999998643
No 173
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=43.37 E-value=10 Score=41.87 Aligned_cols=22 Identities=23% Similarity=0.730 Sum_probs=19.0
Q ss_pred hcccccccCccCcccccCCCcc
Q psy5785 152 KKLDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 152 ~~l~~~~~CI~CG~C~s~CP~~ 173 (340)
+..+....|+.||.|..+||+.
T Consensus 393 eLl~~~~kCI~CG~Cv~aCP~~ 414 (784)
T TIGR00314 393 ELMELANKCTQCGNCVRTCPNS 414 (784)
T ss_pred HHhhhcccCCCcccchhhCCCC
Confidence 4467788999999999999985
No 174
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=42.99 E-value=8.8 Score=31.48 Aligned_cols=19 Identities=26% Similarity=0.719 Sum_probs=15.9
Q ss_pred ccccccCccCcccccCCCc
Q psy5785 154 LDGLYECILCACCSTSCPS 172 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~ 172 (340)
......|+.||.|..+||.
T Consensus 47 ~i~~~~Ci~C~~C~~~CP~ 65 (105)
T PRK09623 47 VVDESKCVKCYICWKFCPE 65 (105)
T ss_pred EECcccCccccchhhhCCH
Confidence 4566789999999999984
No 175
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=42.87 E-value=10 Score=39.45 Aligned_cols=24 Identities=33% Similarity=0.811 Sum_probs=20.8
Q ss_pred ccccccCccCcccccCCCccccCC
Q psy5785 154 LDGLYECILCACCSTSCPSYWWNG 177 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~~ng 177 (340)
...+-.||.|-.|+.+|.+.|.|.
T Consensus 10 v~nldKCIGChTCSvtCK~~WT~r 33 (492)
T TIGR01660 10 VLNLDKCIGCHTCSVTCKNVWTSR 33 (492)
T ss_pred EechhhccCCchhhccCcCccccC
Confidence 556788999999999999998764
No 176
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=42.28 E-value=5.4 Score=32.55 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=16.5
Q ss_pred hchhhhhhcccccccCCCc
Q psy5785 280 DGLYECILCACCSTSCPSY 298 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~ 298 (340)
-++..|--||.|.++||..
T Consensus 63 idYdyCKGCGICa~vCP~k 81 (91)
T COG1144 63 IDYDYCKGCGICANVCPVK 81 (91)
T ss_pred eEcccccCceechhhCChh
Confidence 4678899999999999984
No 177
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=42.00 E-value=9.5 Score=43.41 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=15.2
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...|+.||.|..+||.-
T Consensus 925 ~~~C~~CG~C~~~CP~~ 941 (1019)
T PRK09853 925 DAMCNECGNCAQFCPWN 941 (1019)
T ss_pred CccCccccchhhhCCCC
Confidence 46799999999999984
No 178
>PRK06991 ferredoxin; Provisional
Probab=41.86 E-value=7.5 Score=37.59 Aligned_cols=18 Identities=33% Similarity=0.691 Sum_probs=15.7
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
-..||.||.|+.+||+..
T Consensus 84 ~~~CigCg~Cv~aCP~~A 101 (270)
T PRK06991 84 EQLCIGCTLCMQACPVDA 101 (270)
T ss_pred cccCCCCcHHHHhCCHhh
Confidence 478999999999999764
No 179
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=41.35 E-value=8.2 Score=37.63 Aligned_cols=17 Identities=35% Similarity=0.850 Sum_probs=15.1
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
...|+.||.|+.+||..
T Consensus 200 ~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 200 HSKCIGCGECVLKCPTG 216 (314)
T ss_pred CCcCcCcchhhhhCCHh
Confidence 45799999999999985
No 180
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=41.30 E-value=11 Score=39.71 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=18.2
Q ss_pred hhchhhhhhcccccccCCCcccC
Q psy5785 279 LDGLYECILCACCSTSCPSYWWN 301 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~~~ 301 (340)
+-+ ..|..||+|+++||.-..+
T Consensus 221 yVd-d~CtgCg~C~~vCPve~~n 242 (622)
T COG1148 221 YVD-DKCTGCGACSEVCPVEVPN 242 (622)
T ss_pred ccc-ccccccccccccCCcccCc
Confidence 434 8999999999999997553
No 181
>PRK13984 putative oxidoreductase; Provisional
Probab=40.93 E-value=10 Score=40.08 Aligned_cols=20 Identities=25% Similarity=0.918 Sum_probs=16.7
Q ss_pred ccccccCccCcccccCCCcc
Q psy5785 154 LDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~ 173 (340)
....+.|+.||.|..+||..
T Consensus 181 ~~~~~~C~~Cg~C~~~CP~~ 200 (604)
T PRK13984 181 MQEAARCVECGICTDTCPAH 200 (604)
T ss_pred HHhhhhhcCCCcccccCCCC
Confidence 34567899999999999973
No 182
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=40.83 E-value=9.5 Score=43.40 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=17.4
Q ss_pred hhchhhhhhcccccccCCCcc
Q psy5785 279 LDGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~ 299 (340)
++.-..|+.||.|..+||+..
T Consensus 922 ~~~~~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 922 VHLDAMCNECGNCAQFCPWNG 942 (1019)
T ss_pred EEcCccCccccchhhhCCCCC
Confidence 333588999999999999974
No 183
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=40.69 E-value=11 Score=41.28 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=18.8
Q ss_pred hcccccccCccCcccccCCCcc
Q psy5785 152 KKLDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 152 ~~l~~~~~CI~CG~C~s~CP~~ 173 (340)
+..+....|+.||.|..+||+.
T Consensus 359 el~~~~~kCI~CG~Cv~aCP~~ 380 (731)
T cd01916 359 EFQELAAKCTDCGWCTRACPNS 380 (731)
T ss_pred HHHHhhhcCCCCCcccccCCCC
Confidence 3367788899999999999985
No 184
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=40.41 E-value=9.7 Score=31.23 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=16.9
Q ss_pred hhchhhhhhcccccccCCCc
Q psy5785 279 LDGLYECILCACCSTSCPSY 298 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~ 298 (340)
......|+.||.|+.+||..
T Consensus 47 ~i~~~~Ci~C~~C~~~CP~~ 66 (105)
T PRK09623 47 VVDESKCVKCYICWKFCPEP 66 (105)
T ss_pred EECcccCccccchhhhCCHh
Confidence 34567899999999999975
No 185
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=40.19 E-value=11 Score=41.50 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=18.7
Q ss_pred hcccccccCccCcccccCCCcc
Q psy5785 152 KKLDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 152 ~~l~~~~~CI~CG~C~s~CP~~ 173 (340)
+..+....|+.||.|..+||+.
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~ 419 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNE 419 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCC
Confidence 4467778899999999999974
No 186
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=40.09 E-value=11 Score=30.76 Aligned_cols=16 Identities=31% Similarity=0.785 Sum_probs=14.0
Q ss_pred cCccCcccccCCCccc
Q psy5785 159 ECILCACCSTSCPSYW 174 (340)
Q Consensus 159 ~CI~CG~C~s~CP~~~ 174 (340)
-|-.||.|+.+||+-.
T Consensus 67 yCKGCGICa~vCP~ka 82 (91)
T COG1144 67 YCKGCGICANVCPVKA 82 (91)
T ss_pred cccCceechhhCChhh
Confidence 3999999999999843
No 187
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=39.31 E-value=12 Score=35.71 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=16.4
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+..+|+.|+.|..+||...
T Consensus 206 d~~~C~~C~~C~~~CP~~~ 224 (271)
T PRK09477 206 DRQKCTRCMDCFHVCPEPQ 224 (271)
T ss_pred CcccCcccCCcCCcCCCcc
Confidence 4578999999999999863
No 188
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=38.70 E-value=10 Score=39.05 Aligned_cols=16 Identities=38% Similarity=0.991 Sum_probs=14.2
Q ss_pred hhhhhcccccccCCCc
Q psy5785 283 YECILCACCSTSCPSY 298 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~ 298 (340)
..|+.||.|..+||..
T Consensus 255 ~~Ci~Cg~CidaCp~a 270 (434)
T TIGR02745 255 LECINCGLCIDACDDV 270 (434)
T ss_pred hhChhhhHHHHhCCCh
Confidence 4799999999999974
No 189
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=38.63 E-value=8.9 Score=35.03 Aligned_cols=17 Identities=29% Similarity=0.762 Sum_probs=14.9
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
.+|+.||.|..+||...
T Consensus 144 ~~C~~Cg~Cv~vCP~~A 160 (191)
T PRK05113 144 DLCTGCDLCVAPCPTDC 160 (191)
T ss_pred CcCCchHHHHHHcCcCc
Confidence 47999999999999864
No 190
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=38.61 E-value=11 Score=34.53 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=16.0
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+...|+.||.|+.+||...
T Consensus 112 d~~~Ci~Cg~Cv~aCp~~a 130 (191)
T PRK05113 112 DEDNCIGCTKCIQACPVDA 130 (191)
T ss_pred eCCcCCCCChhhhhCCHhh
Confidence 4578999999999999653
No 191
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=38.16 E-value=10 Score=32.76 Aligned_cols=17 Identities=29% Similarity=0.684 Sum_probs=15.0
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|..+||...
T Consensus 45 ~~C~~Cg~Cv~~CP~~A 61 (132)
T TIGR02060 45 DMCWECYSCVKACPQGA 61 (132)
T ss_pred hhCccHHHHHHhCCcCc
Confidence 46999999999999864
No 192
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=37.97 E-value=8.7 Score=35.91 Aligned_cols=17 Identities=29% Similarity=0.901 Sum_probs=15.1
Q ss_pred chhhhhhcccccccCCC
Q psy5785 281 GLYECILCACCSTSCPS 297 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~ 297 (340)
+..+||.||.|+.+||.
T Consensus 144 d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 144 DHNRCVLCTRCVRVCDE 160 (234)
T ss_pred ehhhCcCccHHHHHHHH
Confidence 45789999999999995
No 193
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=37.85 E-value=12 Score=43.36 Aligned_cols=18 Identities=28% Similarity=0.820 Sum_probs=16.2
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
...+|+.||.|+.+||..
T Consensus 737 ~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 737 SPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred ccccCcCccchhhhcCCC
Confidence 468899999999999985
No 194
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=37.22 E-value=8.9 Score=41.23 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.0
Q ss_pred chhhhhhcccccccCCCccc
Q psy5785 281 GLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~ 300 (340)
+..+||+||.|+.+|.....
T Consensus 614 D~~kCI~CgrCv~~C~ev~~ 633 (652)
T PRK12814 614 EREKCVDCGICVRTLEEYGA 633 (652)
T ss_pred ccccccCchHHHHHHHHhcc
Confidence 68999999999999976643
No 195
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=37.12 E-value=8.7 Score=31.49 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=15.3
Q ss_pred chhhhhhcccccccCCCccc
Q psy5785 281 GLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~ 300 (340)
+...||.||.|..+||-...
T Consensus 38 d~~~CigC~~C~~aCP~~ai 57 (98)
T PF13247_consen 38 DEDKCIGCGYCVEACPYGAI 57 (98)
T ss_dssp -TTTCCTHHHHHHH-TTS-E
T ss_pred chhhccCchhhhhhhccCcc
Confidence 46789999999999999854
No 196
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=36.84 E-value=11 Score=33.54 Aligned_cols=19 Identities=37% Similarity=0.788 Sum_probs=15.7
Q ss_pred ccccccCccCcccccCCCc
Q psy5785 154 LDGLYECILCACCSTSCPS 172 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~ 172 (340)
......|+.||.|..+||.
T Consensus 109 ~id~~~Ci~Cg~C~~aCp~ 127 (165)
T TIGR01944 109 LIDEDNCIGCTKCIQACPV 127 (165)
T ss_pred EEECCcCCChhHHHHhCCc
Confidence 4456679999999999984
No 197
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=36.70 E-value=11 Score=35.35 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=16.6
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|+.||.|..+||+...
T Consensus 189 ~~~C~~Cg~Cv~vCP~gAL 207 (234)
T PRK07569 189 SETCTSCGKCVQACPTGAI 207 (234)
T ss_pred cccccchHHHHHhCCCCcE
Confidence 4579999999999999854
No 198
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=36.23 E-value=14 Score=35.13 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=15.5
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
..+|+.||.|..+||..
T Consensus 200 ~~~C~~C~~C~~vCP~~ 216 (255)
T TIGR02163 200 REKCTNCMDCFNVCPEP 216 (255)
T ss_pred cccCeEcCCccCcCCCC
Confidence 57899999999999986
No 199
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=35.96 E-value=8.7 Score=37.70 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.7
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
..+||+||-|+.+|-...
T Consensus 211 ~nKCIlCgRCVRaC~EVq 228 (297)
T PTZ00305 211 LNRCIHCTRCVRFLNEHA 228 (297)
T ss_pred CCcCcCccHHHHHHHHhh
Confidence 588999999999997753
No 200
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=35.32 E-value=14 Score=37.42 Aligned_cols=17 Identities=35% Similarity=0.841 Sum_probs=15.6
Q ss_pred chhhhhhcccccccCCC
Q psy5785 281 GLYECILCACCSTSCPS 297 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~ 297 (340)
....|+.||.|..+||.
T Consensus 375 ~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 375 IEEECVGCNLCAHVCPV 391 (420)
T ss_pred chhhCcccchHHhhCCC
Confidence 46889999999999998
No 201
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=34.83 E-value=13 Score=37.17 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=16.2
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|+.||.|..+||....
T Consensus 49 ~~~C~~Cg~Cv~~CP~~Ai 67 (374)
T TIGR02512 49 ESNCIGCGQCSLVCPVGAI 67 (374)
T ss_pred cccCcCccCHHHhCCCChh
Confidence 4679999999999998643
No 202
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=34.76 E-value=15 Score=39.54 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.0
Q ss_pred cccccCccCcccccCCCcccc
Q psy5785 155 DGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~~~ 175 (340)
...+.|+.||+|+..||..-+
T Consensus 605 id~~~C~GCg~C~~iCP~~a~ 625 (640)
T COG4231 605 IDPSSCNGCGSCVEVCPSFAI 625 (640)
T ss_pred ecccccccchhhhhcCchhhe
Confidence 334569999999999999754
No 203
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=34.46 E-value=14 Score=37.70 Aligned_cols=19 Identities=26% Similarity=0.725 Sum_probs=16.1
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|+.+||...
T Consensus 328 d~~~Ci~CGaCV~aCP~~A 346 (391)
T TIGR03287 328 NTEDCFGCGYCAEICPGGA 346 (391)
T ss_pred ChHhCcChHHHHhhCCccc
Confidence 4577999999999999853
No 204
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=34.44 E-value=17 Score=40.43 Aligned_cols=20 Identities=25% Similarity=0.702 Sum_probs=17.3
Q ss_pred cccCccCcccccCCCccccC
Q psy5785 157 LYECILCACCSTSCPSYWWN 176 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~n 176 (340)
..+|+.||.|+.+||+....
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL~ 222 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALS 222 (819)
T ss_pred cccccccCcHHHhCCCCccc
Confidence 46899999999999997654
No 205
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=34.43 E-value=18 Score=36.86 Aligned_cols=27 Identities=33% Similarity=0.701 Sum_probs=22.2
Q ss_pred HHHhhchhhhhhcccccccCCCcccCC
Q psy5785 276 RKKLDGLYECILCACCSTSCPSYWWNG 302 (340)
Q Consensus 276 ~~~~~~~~~CIlCg~C~saCP~~~~~~ 302 (340)
..-...+.+||-|+.|+-.|-+.|.+.
T Consensus 7 v~MvmnLDKCIGCHTCSvTCKnvWTnR 33 (513)
T COG1140 7 VGMVLNLDKCIGCHTCSVTCKNVWTNR 33 (513)
T ss_pred hhHhhcccccccccccceeecccccCC
Confidence 444568999999999999999987643
No 206
>PRK08764 ferredoxin; Provisional
Probab=33.90 E-value=15 Score=31.55 Aligned_cols=17 Identities=29% Similarity=0.717 Sum_probs=14.8
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|..+||...
T Consensus 115 ~~C~~Cg~Cv~~CP~~A 131 (135)
T PRK08764 115 PLCTGCELCVPACPVDC 131 (135)
T ss_pred CcCcCccchhhhcCccc
Confidence 37999999999999863
No 207
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=33.78 E-value=13 Score=33.05 Aligned_cols=18 Identities=33% Similarity=0.776 Sum_probs=15.8
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
+...|+.||.|..+||..
T Consensus 111 d~~~Ci~Cg~C~~aCp~~ 128 (165)
T TIGR01944 111 DEDNCIGCTKCIQACPVD 128 (165)
T ss_pred ECCcCCChhHHHHhCCcc
Confidence 467899999999999965
No 208
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=33.19 E-value=15 Score=35.81 Aligned_cols=21 Identities=33% Similarity=0.854 Sum_probs=16.7
Q ss_pred cccccCccCcccccCCCcccc
Q psy5785 155 DGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~~~ 175 (340)
.....|+.||.|+.+||..-+
T Consensus 198 id~~~C~~Cg~Cv~~CP~~Al 218 (314)
T TIGR02912 198 RDHSKCIGCGECVLKCPTGAW 218 (314)
T ss_pred eCCCcCcCcchhhhhCCHhhc
Confidence 345679999999999998543
No 209
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=33.12 E-value=14 Score=38.14 Aligned_cols=18 Identities=39% Similarity=0.892 Sum_probs=16.1
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
..+|+.|+.|..+||...
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi 247 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGI 247 (434)
T ss_pred CCCCCChhhhHHhCCCCC
Confidence 478999999999999884
No 210
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=33.11 E-value=11 Score=35.77 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=18.1
Q ss_pred hhchhhhhhcccccccCCCcc
Q psy5785 279 LDGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~ 299 (340)
+.+...|+.|++|+.+|+...
T Consensus 47 ~iD~~kCiGC~~C~~AC~~~n 67 (244)
T PRK14993 47 LIDLRRCIGCQSCTVSCTIEN 67 (244)
T ss_pred EEEHHHCCCchHHHHHhhhhc
Confidence 447899999999999999853
No 211
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=33.03 E-value=9.3 Score=31.29 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=15.7
Q ss_pred ccccccCccCcccccCCCcccc
Q psy5785 154 LDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
+.....||.||.|..+||-..+
T Consensus 36 ~id~~~CigC~~C~~aCP~~ai 57 (98)
T PF13247_consen 36 VIDEDKCIGCGYCVEACPYGAI 57 (98)
T ss_dssp EE-TTTCCTHHHHHHH-TTS-E
T ss_pred EechhhccCchhhhhhhccCcc
Confidence 4446679999999999998644
No 212
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=32.57 E-value=25 Score=35.68 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.9
Q ss_pred chhhhhhcccccccCCCccc
Q psy5785 281 GLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~ 300 (340)
.+..|..|+-|...||+...
T Consensus 12 ~l~iC~~C~~C~~~CpvfPa 31 (372)
T TIGR02484 12 VLNLCNSCGYCTGLCAVFPA 31 (372)
T ss_pred HhHhCcCcCCccccCCCccc
Confidence 47999999999999999953
No 213
>PRK08764 ferredoxin; Provisional
Probab=32.49 E-value=14 Score=31.63 Aligned_cols=17 Identities=35% Similarity=0.851 Sum_probs=15.0
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..||.||.|+.+||...
T Consensus 85 ~~Ci~C~~Cv~aCp~~a 101 (135)
T PRK08764 85 ADCIGCTKCIQACPVDA 101 (135)
T ss_pred ccCcCcchHHHhCChhh
Confidence 68999999999999653
No 214
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=32.48 E-value=16 Score=35.57 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.3
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+..+|+.||-|.++|+-..
T Consensus 67 ~~e~C~~CG~C~~vC~f~A 85 (284)
T COG1149 67 DPEKCIRCGKCAEVCRFGA 85 (284)
T ss_pred ChhhccccCcHHHhCCCCe
Confidence 4566999999999997653
No 215
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=32.34 E-value=15 Score=36.61 Aligned_cols=21 Identities=33% Similarity=0.732 Sum_probs=17.5
Q ss_pred hhchhhhhhcccccccCCCcc
Q psy5785 279 LDGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~ 299 (340)
..+...|+.||.|..+||...
T Consensus 210 ~id~~~Ci~Cg~Ci~~CP~~a 230 (341)
T TIGR02066 210 EVDVEKCIYCGNCYTMCPAMP 230 (341)
T ss_pred eeccccCCcCCchHHhCchhh
Confidence 335688999999999999953
No 216
>PRK09898 hypothetical protein; Provisional
Probab=32.30 E-value=14 Score=33.97 Aligned_cols=18 Identities=33% Similarity=0.962 Sum_probs=15.6
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
..+|+.||.|+.+||...
T Consensus 180 ~~kC~~Cg~Cv~~CP~~A 197 (208)
T PRK09898 180 SSKCVLCGECANACPTGA 197 (208)
T ss_pred CCcCcChHHHHHhCCccc
Confidence 368999999999999863
No 217
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=32.22 E-value=15 Score=34.17 Aligned_cols=17 Identities=35% Similarity=0.774 Sum_probs=14.7
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...||.||-|..+||-.
T Consensus 99 ~d~CIGC~yCi~ACPyg 115 (203)
T COG0437 99 KDLCIGCGYCIAACPYG 115 (203)
T ss_pred CCcccCchHHHhhCCCC
Confidence 44599999999999975
No 218
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=32.03 E-value=26 Score=26.74 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=10.5
Q ss_pred ceEEEEEecCCCC
Q psy5785 48 YKTFAIYRWNPDK 60 (340)
Q Consensus 48 ~~~~~I~R~~P~~ 60 (340)
.=+++||||||+.
T Consensus 38 ~~~iKIfkyd~~t 50 (63)
T PF14157_consen 38 DGQIKIFKYDEDT 50 (63)
T ss_dssp TTEEEEEEEETTT
T ss_pred CCeEEEEEeCCCC
Confidence 3478999999964
No 219
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=31.99 E-value=16 Score=34.16 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=15.6
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+...|+.|+.|..+||...
T Consensus 146 d~~~C~~C~~C~~~CP~~a 164 (234)
T TIGR02700 146 DRKRCKGCGICVDACPRSA 164 (234)
T ss_pred ChhHCcCcchHHHhCCccc
Confidence 3467999999999999753
No 220
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=31.84 E-value=18 Score=36.05 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=17.6
Q ss_pred ccccccCccCcccccCCCcccc
Q psy5785 154 LDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
......|+.||.|..+||...+
T Consensus 210 ~id~~~Ci~Cg~Ci~~CP~~a~ 231 (341)
T TIGR02066 210 EVDVEKCIYCGNCYTMCPAMPI 231 (341)
T ss_pred eeccccCCcCCchHHhCchhhc
Confidence 3445679999999999998644
No 221
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=31.48 E-value=17 Score=36.76 Aligned_cols=16 Identities=38% Similarity=0.891 Sum_probs=14.6
Q ss_pred cCccCcccccCCCccc
Q psy5785 159 ECILCACCSTSCPSYW 174 (340)
Q Consensus 159 ~CI~CG~C~s~CP~~~ 174 (340)
+||.||-|..+|+...
T Consensus 246 ~CI~C~~CidaCd~~~ 261 (386)
T COG0348 246 ECIGCGRCIDACDDDM 261 (386)
T ss_pred ccccHhhHhhhCCHHh
Confidence 7999999999999864
No 222
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=31.45 E-value=19 Score=36.61 Aligned_cols=15 Identities=40% Similarity=1.088 Sum_probs=7.3
Q ss_pred ccCccCcccccCCCc
Q psy5785 158 YECILCACCSTSCPS 172 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~ 172 (340)
..|+.|+.|..+||.
T Consensus 10 ~~Ci~C~~C~~~CP~ 24 (411)
T TIGR03224 10 EICIRCNTCEETCPI 24 (411)
T ss_pred ccCcCccchhhhCCc
Confidence 335555555555553
No 223
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=31.14 E-value=19 Score=35.74 Aligned_cols=24 Identities=33% Similarity=0.877 Sum_probs=20.3
Q ss_pred hhchhhhhhcccccccCCCcccCC
Q psy5785 279 LDGLYECILCACCSTSCPSYWWNG 302 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~~~~ 302 (340)
.-++.+||-|+.|+-+|-+.|.+.
T Consensus 7 v~~l~kcigc~tcs~~ck~~wt~r 30 (321)
T TIGR03478 7 VIDLNKCIGCQTCTVACKNLWTNR 30 (321)
T ss_pred EeccccccccccchhhhhCcccCC
Confidence 346899999999999999987643
No 224
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=31.00 E-value=19 Score=33.66 Aligned_cols=17 Identities=29% Similarity=0.890 Sum_probs=15.0
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|..+||...
T Consensus 177 ~~C~~Cg~C~~~CP~~A 193 (234)
T TIGR02700 177 LKCVGCGKCKEACPYNA 193 (234)
T ss_pred hhCCccchHHhhCCCCc
Confidence 46999999999999874
No 225
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=30.89 E-value=19 Score=33.55 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=16.5
Q ss_pred cccccCccCcc--cccCCCcccc
Q psy5785 155 DGLYECILCAC--CSTSCPSYWW 175 (340)
Q Consensus 155 ~~~~~CI~CG~--C~s~CP~~~~ 175 (340)
+....|+.|+- |+.+||+..+
T Consensus 89 ~~~~~C~~C~~~~Cv~~CP~gAi 111 (225)
T TIGR03149 89 FFRKSCQHCDNAPCVAVCPTGAS 111 (225)
T ss_pred ECchhccCCcCcChHhhCCCCcE
Confidence 44567999995 9999998654
No 226
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=30.67 E-value=14 Score=37.53 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=10.4
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
...|+.|+.|..+||..
T Consensus 38 ~~~C~~C~~C~~~CP~~ 54 (411)
T TIGR03224 38 ADVCNGCMACVSPCPTG 54 (411)
T ss_pred cccCcCHHHHHhhcCcc
Confidence 34566666666666654
No 227
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=30.65 E-value=19 Score=29.84 Aligned_cols=18 Identities=28% Similarity=0.800 Sum_probs=15.2
Q ss_pred cccccCccCcccccCCCc
Q psy5785 155 DGLYECILCACCSTSCPS 172 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~ 172 (340)
.....|.+||.|-..||.
T Consensus 62 ~~yegClECGTCRvlc~~ 79 (99)
T COG2440 62 FDYEGCLECGTCRVLCPH 79 (99)
T ss_pred EeecCeeeccceeEecCC
Confidence 334569999999999998
No 228
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=29.11 E-value=21 Score=37.60 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.5
Q ss_pred cccCccCcccccCCCcccc
Q psy5785 157 LYECILCACCSTSCPSYWW 175 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ 175 (340)
..-||.||.|+-.||--.+
T Consensus 49 E~lCiGCGICvkkCPF~AI 67 (591)
T COG1245 49 EELCIGCGICVKKCPFDAI 67 (591)
T ss_pred hhhhccchhhhccCCcceE
Confidence 3449999999999998644
No 229
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=29.06 E-value=21 Score=33.32 Aligned_cols=18 Identities=28% Similarity=0.741 Sum_probs=15.3
Q ss_pred ccccCccCcccccCCCcc
Q psy5785 156 GLYECILCACCSTSCPSY 173 (340)
Q Consensus 156 ~~~~CI~CG~C~s~CP~~ 173 (340)
....||.||.|..+||..
T Consensus 44 D~~rCigC~~C~~aC~~~ 61 (225)
T TIGR03149 44 DETACIGCTACMDACREV 61 (225)
T ss_pred EHHHCcCcHHHHHHhhHH
Confidence 345699999999999974
No 230
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=28.99 E-value=31 Score=37.16 Aligned_cols=17 Identities=35% Similarity=0.839 Sum_probs=8.8
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
...|+-||.|..+||..
T Consensus 437 ~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 437 HDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HHHhhhhhhhhhhCccc
Confidence 34455555555555544
No 231
>PRK13409 putative ATPase RIL; Provisional
Probab=28.57 E-value=24 Score=37.63 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=14.5
Q ss_pred cCccCcccccCCCcccc
Q psy5785 159 ECILCACCSTSCPSYWW 175 (340)
Q Consensus 159 ~CI~CG~C~s~CP~~~~ 175 (340)
-||.||.|+-.||--.+
T Consensus 50 ~c~~c~~c~~~cp~~a~ 66 (590)
T PRK13409 50 LCIGCGICVKKCPFDAI 66 (590)
T ss_pred hccccccccccCCcceE
Confidence 39999999999998543
No 232
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=28.46 E-value=17 Score=36.20 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=21.4
Q ss_pred HHHHHhhchhhhhhcccccccCCCcc
Q psy5785 274 DDRKKLDGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 274 ~~~~~~~~~~~CIlCg~C~saCP~~~ 299 (340)
+....+.+.+.||-|++|+.+|....
T Consensus 36 ~~~~~liD~tkCiGC~aC~~AC~~~n 61 (328)
T PRK10882 36 GALGMLYDSTLCVGCQACVTKCQEIN 61 (328)
T ss_pred ccEEEEEeHhhCCCChHHHHHhcccc
Confidence 34455778999999999999998864
No 233
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=28.24 E-value=19 Score=29.83 Aligned_cols=18 Identities=28% Similarity=0.848 Sum_probs=16.1
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
++..|++||.|--.||..
T Consensus 63 ~yegClECGTCRvlc~~~ 80 (99)
T COG2440 63 DYEGCLECGTCRVLCPHS 80 (99)
T ss_pred eecCeeeccceeEecCCC
Confidence 578899999999999993
No 234
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=28.06 E-value=44 Score=33.49 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=17.4
Q ss_pred ccCccCcccccCCCccccCC
Q psy5785 158 YECILCACCSTSCPSYWWNG 177 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~~~~ng 177 (340)
..|..|..|+.+||....++
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~ 204 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVA 204 (337)
T ss_pred ccChhhHHHHhhCCcccccC
Confidence 67999999999999976654
No 235
>PRK09898 hypothetical protein; Provisional
Probab=28.01 E-value=24 Score=32.34 Aligned_cols=17 Identities=41% Similarity=1.052 Sum_probs=14.8
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.|+.|+.+||...
T Consensus 154 ~~CigC~~C~~aCP~~a 170 (208)
T PRK09898 154 KRCIGCSACTTACPWMM 170 (208)
T ss_pred ccCCCcCcccccCCCCC
Confidence 45999999999999864
No 236
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=27.88 E-value=23 Score=35.39 Aligned_cols=14 Identities=36% Similarity=1.061 Sum_probs=12.1
Q ss_pred cCccCcccccCCCc
Q psy5785 159 ECILCACCSTSCPS 172 (340)
Q Consensus 159 ~CI~CG~C~s~CP~ 172 (340)
-|..||.|++.||.
T Consensus 6 ~c~~Cg~C~a~cp~ 19 (332)
T COG1035 6 LCTGCGTCAAVCPY 19 (332)
T ss_pred ccccchhhHhhCCc
Confidence 48889999999998
No 237
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=27.86 E-value=21 Score=35.67 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=14.8
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
..-|..||.|.+.||.+
T Consensus 4 ~~~c~~Cg~C~a~cp~~ 20 (332)
T COG1035 4 AGLCTGCGTCAAVCPYA 20 (332)
T ss_pred CcccccchhhHhhCCce
Confidence 35699999999999994
No 238
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=27.64 E-value=29 Score=37.34 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=18.0
Q ss_pred hchhhhhhcccccccCCCccc
Q psy5785 280 DGLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~~ 300 (340)
+...+|..||-|.-+||+...
T Consensus 397 e~a~kc~~cG~C~~~CP~~l~ 417 (772)
T COG1152 397 EYARKCTYCGNCMRACPNELD 417 (772)
T ss_pred HHHHhcccccchhccCCcccc
Confidence 347899999999999998754
No 239
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=27.48 E-value=19 Score=38.34 Aligned_cols=14 Identities=36% Similarity=1.018 Sum_probs=8.3
Q ss_pred hhhhcccccccCCC
Q psy5785 284 ECILCACCSTSCPS 297 (340)
Q Consensus 284 ~CIlCg~C~saCP~ 297 (340)
.|+.||.|..+||.
T Consensus 579 ~C~~Cg~C~~~CP~ 592 (595)
T TIGR03336 579 LCTGCGVCAQICPF 592 (595)
T ss_pred CCcCHHHHHhhCcc
Confidence 46666666666664
No 240
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=27.42 E-value=19 Score=31.82 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=29.5
Q ss_pred cccC--ccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC--CCceEEEeCCC
Q psy5785 157 LYEC--ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN--DKVSKIYPLPH 232 (340)
Q Consensus 157 ~~~C--I~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~--~~~~~I~pL~~ 232 (340)
...| ..||+|... +|| .. ..+|.....+. ..+.+||.|..
T Consensus 35 K~gC~~G~CGACtVl-----vdg---------------------------~~----v~SCl~~~~~~~G~~V~TiEgl~~ 78 (148)
T TIGR03193 35 KQGCDGGECGACTVL-----VDG---------------------------RP----RLACSTLAHRVAGRKVETVEGLAT 78 (148)
T ss_pred CCCCCCCCCCCCEEE-----ECC---------------------------eE----eeccHhhHhhcCCCcEEEeCCCCC
Confidence 4568 999999988 887 23 56788776543 56889999864
No 241
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=26.84 E-value=30 Score=34.98 Aligned_cols=17 Identities=35% Similarity=0.825 Sum_probs=15.5
Q ss_pred hhhhcccccccCCCccc
Q psy5785 284 ECILCACCSTSCPSYWW 300 (340)
Q Consensus 284 ~CIlCg~C~saCP~~~~ 300 (340)
.||.||.|.++|+....
T Consensus 246 ~CI~C~~CidaCd~~~~ 262 (386)
T COG0348 246 ECIGCGRCIDACDDDML 262 (386)
T ss_pred ccccHhhHhhhCCHHhh
Confidence 79999999999999864
No 242
>PRK13795 hypothetical protein; Provisional
Probab=26.76 E-value=23 Score=38.23 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=18.3
Q ss_pred ccccccc-cccchhhhcchhcccCCchhhhcccc-cccCccCcccccC
Q psy5785 124 NNQLNFS-ARSSHATAISNAQYLQSLDDRKKLDG-LYECILCACCSTS 169 (340)
Q Consensus 124 s~~~~~v-~~~~~l~~i~~~e~~~~~e~~~~l~~-~~~CI~CG~C~s~ 169 (340)
+++..|- .+ .+.|+....... ..+|. .+.=|.|-.|-+.
T Consensus 379 ~PI~~Wt~~d--Vw~YI~~~~lp~-----npLY~~Gy~riGC~~Cp~~ 419 (636)
T PRK13795 379 SPIQDWTALE--VWLYIFWRKLPY-----NPLYERGFDRIGCWLCPSS 419 (636)
T ss_pred echHhCCHHH--HHHHHHHhCCCC-----ChHHHCCCCCCCccCCCCC
Confidence 4444443 33 566666543211 11232 2445777665554
No 243
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=26.25 E-value=16 Score=38.72 Aligned_cols=17 Identities=24% Similarity=0.614 Sum_probs=14.6
Q ss_pred chhhhhhcccccccCCC
Q psy5785 281 GLYECILCACCSTSCPS 297 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~ 297 (340)
+..+||+||.|+.+|-.
T Consensus 140 d~~rCI~C~rCvr~c~e 156 (603)
T TIGR01973 140 EMTRCIHCTRCVRFANE 156 (603)
T ss_pred cCCcCccccHHHHHHHH
Confidence 46789999999999954
No 244
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=26.08 E-value=15 Score=32.78 Aligned_cols=18 Identities=28% Similarity=0.728 Sum_probs=15.9
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
+...|+.|+.|+.+||..
T Consensus 8 d~~~C~gC~~C~~aC~~~ 25 (181)
T PRK10330 8 DASKCIGCRTCEVACVVS 25 (181)
T ss_pred CcccCcCccHHHHHHHHH
Confidence 568899999999999964
No 245
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=25.87 E-value=24 Score=30.48 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.3
Q ss_pred chhhhhhcc-----cccccCCCcc
Q psy5785 281 GLYECILCA-----CCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg-----~C~saCP~~~ 299 (340)
....|+.|| .|+.+||+..
T Consensus 6 ~~~~C~gC~~~~~~~Cv~~CP~~a 29 (132)
T TIGR02060 6 YPTKCDGCKAGEKTACVYICPNDL 29 (132)
T ss_pred ccccccCccCCchhcCHhhcCccc
Confidence 457899999 9999999864
No 246
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=25.44 E-value=22 Score=33.09 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=18.7
Q ss_pred hhcccccccCccCcccccCCCccc
Q psy5785 151 RKKLDGLYECILCACCSTSCPSYW 174 (340)
Q Consensus 151 ~~~l~~~~~CI~CG~C~s~CP~~~ 174 (340)
...+.....||.|.+|+.+|-..+
T Consensus 11 ~~~~~D~~rCiGC~aC~~AC~~~n 34 (203)
T COG0437 11 YAFVIDSSRCIGCKACVVACKEEN 34 (203)
T ss_pred eEEEEecccccCcHHHHHHHHHhc
Confidence 334666788999999999996643
No 247
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=25.44 E-value=27 Score=34.00 Aligned_cols=19 Identities=32% Similarity=0.760 Sum_probs=15.1
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+...|+.|+.|..+||...
T Consensus 122 d~dkCigC~~Cv~aCP~~a 140 (283)
T TIGR01582 122 DHSKCIGCGYCIVGCPFNI 140 (283)
T ss_pred eHHHCCcchHHHhhCCCCC
Confidence 4567899999999998764
No 248
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=25.15 E-value=28 Score=30.39 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=16.1
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|..+||...
T Consensus 93 ~~~~C~~C~~C~~aCP~~a 111 (161)
T TIGR02951 93 DQDKCIGCRYCVWACPYGA 111 (161)
T ss_pred CHHhCCCchHHHhhCCCCC
Confidence 3578999999999999753
No 249
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=24.83 E-value=19 Score=39.52 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=14.4
Q ss_pred chhhhhhcccccccCCC
Q psy5785 281 GLYECILCACCSTSCPS 297 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~ 297 (340)
+..+||+||.|+.+|--
T Consensus 142 d~~rCi~C~rCvr~c~e 158 (776)
T PRK09129 142 EMTRCIHCTRCVRFGQE 158 (776)
T ss_pred cccccccCcHHHHHHHH
Confidence 45789999999999954
No 250
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=24.73 E-value=21 Score=38.46 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=17.8
Q ss_pred hhchhhhhhcccccccCCCccc
Q psy5785 279 LDGLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~~~ 300 (340)
..+...|+-||+|...||....
T Consensus 604 ~id~~~C~GCg~C~~iCP~~a~ 625 (640)
T COG4231 604 RIDPSSCNGCGSCVEVCPSFAI 625 (640)
T ss_pred eecccccccchhhhhcCchhhe
Confidence 3355679999999999999854
No 251
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=23.98 E-value=37 Score=36.98 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=46.3
Q ss_pred ccCccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccC-CCCceEEEeCCCCcee
Q psy5785 158 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDA-NDKVSKIYPLPHMYVV 236 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~-~~~~~~I~pL~~~pvi 236 (340)
..|..||.|+.+||+.-.....|.. ++..|.+..- .---..+..+|.-.+.- ++..+.|.|=.+.||=
T Consensus 185 ~~~~~~G~cv~~CPvgAl~~k~~~~-----~~r~w~l~~~------~sic~~c~vGC~i~v~~r~~~V~ri~pr~n~~vN 253 (687)
T PRK09130 185 LTSELSGNVIDLCPVGALTSKPYAF-----TARPWELKKT------ESIDVMDAVGSNIRVDTRGREVMRILPRVNEEVN 253 (687)
T ss_pred ccccccccHHhhCCCcccccccccc-----ccCcceeeec------cccCCCCCCCCCeEEEEeCCEEEEEeCCCCCCCC
Confidence 3577899999999997654222111 1111211100 00112457777766543 3677889888888888
Q ss_pred eecccChhHH
Q psy5785 237 KDLVPDMNNF 246 (340)
Q Consensus 237 kDLvvD~~~~ 246 (340)
+..+.|+..|
T Consensus 254 ~g~iC~KgRf 263 (687)
T PRK09130 254 EEWISDKTRF 263 (687)
T ss_pred Cccccccccc
Confidence 8888887654
No 252
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=23.97 E-value=28 Score=39.68 Aligned_cols=16 Identities=38% Similarity=0.766 Sum_probs=12.0
Q ss_pred hhhhcccccccCCCcc
Q psy5785 284 ECILCACCSTSCPSYW 299 (340)
Q Consensus 284 ~CIlCg~C~saCP~~~ 299 (340)
.|+.||.|..+||...
T Consensus 922 ~C~~CG~C~~vCP~~a 937 (1012)
T TIGR03315 922 MCNECGNCATFCPYDG 937 (1012)
T ss_pred cccccchHHHhCCCCc
Confidence 3888888888888763
No 253
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=23.70 E-value=32 Score=35.23 Aligned_cols=24 Identities=38% Similarity=0.851 Sum_probs=20.6
Q ss_pred ccccccCccCcccccCCCccccCC
Q psy5785 154 LDGLYECILCACCSTSCPSYWWNG 177 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~~ng 177 (340)
...+..||.|-.|+..|-++|.|.
T Consensus 10 vmnLDKCIGCHTCSvTCKnvWTnR 33 (513)
T COG1140 10 VLNLDKCIGCHTCSVTCKNVWTNR 33 (513)
T ss_pred hhcccccccccccceeecccccCC
Confidence 455778999999999999999864
No 254
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=23.67 E-value=36 Score=32.57 Aligned_cols=23 Identities=35% Similarity=0.714 Sum_probs=18.8
Q ss_pred cccccccCccCcccccCCCcccc
Q psy5785 153 KLDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 153 ~l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
.+....-|+.||.|.++||+..+
T Consensus 185 ll~qg~~C~G~~TC~A~CP~~ai 207 (247)
T COG1941 185 LLEQGLPCMGCGTCAASCPSRAI 207 (247)
T ss_pred eecCCCcccCchhhhccCCccCC
Confidence 35555679999999999999765
No 255
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=23.55 E-value=26 Score=34.60 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=16.4
Q ss_pred ccCccCcccccCCCccccC
Q psy5785 158 YECILCACCSTSCPSYWWN 176 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~~~~n 176 (340)
.-|..|+.|+.+||+..+.
T Consensus 205 ~fC~~C~~C~~~CP~~Ai~ 223 (314)
T TIGR02486 205 KFCETCGKCADECPSGAIS 223 (314)
T ss_pred ccCcchhHHHhhCCccccC
Confidence 5699999999999997664
No 256
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=23.48 E-value=26 Score=35.80 Aligned_cols=17 Identities=29% Similarity=0.872 Sum_probs=14.4
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...|+.||.|+.+||.-
T Consensus 329 ~~~Ci~CGaCV~aCP~~ 345 (391)
T TIGR03287 329 TEDCFGCGYCAEICPGG 345 (391)
T ss_pred hHhCcChHHHHhhCCcc
Confidence 35699999999999974
No 257
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=23.34 E-value=33 Score=37.88 Aligned_cols=21 Identities=5% Similarity=-0.176 Sum_probs=17.0
Q ss_pred hhhcccccccccCCcc---cceeE
Q psy5785 80 QLSAAASSAVPAEKPA---KYKTF 100 (340)
Q Consensus 80 r~sCrecam~iNG~p~---ac~tl 100 (340)
--+||.|-+.|+|.++ +|.|-
T Consensus 45 ~g~Cr~C~Vev~g~~~~~~aC~t~ 68 (797)
T PRK07860 45 VGACRQCLVEVEGQRKPQASCTTT 68 (797)
T ss_pred CcccCccEEEECCCcccccccCCC
Confidence 5789999999999865 78654
No 258
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=23.34 E-value=26 Score=36.80 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=14.7
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
....|+.||.|..+||..
T Consensus 539 ~~~~C~~Cg~C~~~CP~~ 556 (564)
T PRK12771 539 DYDKCTGCHICADVCPCG 556 (564)
T ss_pred ecccCcChhHHHhhcCcC
Confidence 457799999999999875
No 259
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=23.03 E-value=29 Score=39.58 Aligned_cols=15 Identities=40% Similarity=0.906 Sum_probs=13.8
Q ss_pred cCccCcccccCCCcc
Q psy5785 159 ECILCACCSTSCPSY 173 (340)
Q Consensus 159 ~CI~CG~C~s~CP~~ 173 (340)
.|+.||.|..+||..
T Consensus 922 ~C~~CG~C~~vCP~~ 936 (1012)
T TIGR03315 922 MCNECGNCATFCPYD 936 (1012)
T ss_pred cccccchHHHhCCCC
Confidence 499999999999995
No 260
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=22.84 E-value=15 Score=32.10 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=16.4
Q ss_pred hchhhhhhcccccccCCCc
Q psy5785 280 DGLYECILCACCSTSCPSY 298 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~ 298 (340)
.+...|+-|++|+.+|+..
T Consensus 6 ~d~~~C~gC~~C~~aC~~~ 24 (161)
T TIGR02951 6 VDQTRCSGCKTCQIACKDK 24 (161)
T ss_pred EEcccCcCchHHHHHHHHH
Confidence 3578899999999999964
No 261
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=22.81 E-value=25 Score=37.45 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=13.0
Q ss_pred cCccCcccccCCCcc
Q psy5785 159 ECILCACCSTSCPSY 173 (340)
Q Consensus 159 ~CI~CG~C~s~CP~~ 173 (340)
.|+.||.|..+||..
T Consensus 579 ~C~~Cg~C~~~CP~~ 593 (595)
T TIGR03336 579 LCTGCGVCAQICPFD 593 (595)
T ss_pred CCcCHHHHHhhCccc
Confidence 699999999999963
No 262
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=22.67 E-value=20 Score=36.84 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=19.7
Q ss_pred HHhhchhhhhhcc--cccccCCCccc
Q psy5785 277 KKLDGLYECILCA--CCSTSCPSYWW 300 (340)
Q Consensus 277 ~~~~~~~~CIlCg--~C~saCP~~~~ 300 (340)
+..+....|+.|+ -|..+||....
T Consensus 34 ~~~~~~~~c~~c~~~~C~~~CP~~~~ 59 (467)
T TIGR01318 34 QAQYQADRCLYCGNPYCEWKCPVHNA 59 (467)
T ss_pred HHHHHHHhcccCCCccccccCCCCCc
Confidence 3345689999998 69999999964
No 263
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=22.60 E-value=35 Score=36.15 Aligned_cols=17 Identities=35% Similarity=0.968 Sum_probs=11.8
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...|+.||.|..+||+.
T Consensus 270 ~~~c~~c~~C~~ac~~~ 286 (622)
T COG1148 270 PKHCIECGLCEKACPNE 286 (622)
T ss_pred hhhhccchhhhhcCCcc
Confidence 44577777777777754
No 264
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=22.59 E-value=33 Score=37.34 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=15.9
Q ss_pred hhhcccccccCCCcccCCC
Q psy5785 285 CILCACCSTSCPSYWWNGE 303 (340)
Q Consensus 285 CIlCg~C~saCP~~~~~~~ 303 (340)
|..||.|+++||++.....
T Consensus 187 ~~~~G~cv~~CPvgAl~~k 205 (687)
T PRK09130 187 SELSGNVIDLCPVGALTSK 205 (687)
T ss_pred ccccccHHhhCCCcccccc
Confidence 5689999999999976544
No 265
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=22.56 E-value=32 Score=34.17 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.0
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|+.|+.|..+||....
T Consensus 142 ~dkCigCg~Cv~aCP~gai 160 (328)
T PRK10882 142 KDVCTGCRYCMVACPFNVP 160 (328)
T ss_pred HHHcCcccHHHHhCCccce
Confidence 4679999999999997653
No 266
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=22.47 E-value=31 Score=32.63 Aligned_cols=16 Identities=31% Similarity=0.912 Sum_probs=13.9
Q ss_pred hhhhhcccccccCCCc
Q psy5785 283 YECILCACCSTSCPSY 298 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~ 298 (340)
..|+.|+.|..+||..
T Consensus 199 ~~C~~C~~C~~~Cp~~ 214 (259)
T cd07030 199 EDCSLCKLCERACDAG 214 (259)
T ss_pred hhCcCchHHHHhCCCC
Confidence 3799999999999953
No 267
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=22.26 E-value=28 Score=32.60 Aligned_cols=17 Identities=35% Similarity=1.050 Sum_probs=14.7
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|..+||...
T Consensus 203 ~~C~~C~~C~~~CP~~~ 219 (228)
T TIGR03294 203 DRCIKCGACYVQCPRAF 219 (228)
T ss_pred hhccCHHHHHHHcCCCC
Confidence 45999999999999974
No 268
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=22.23 E-value=35 Score=36.24 Aligned_cols=24 Identities=13% Similarity=-0.075 Sum_probs=18.2
Q ss_pred hhhhhhcccccccccCCc---c-cceeE
Q psy5785 77 RSFQLSAAASSAVPAEKP---A-KYKTF 100 (340)
Q Consensus 77 lafr~sCrecam~iNG~p---~-ac~tl 100 (340)
+..--+||.|-+.|+|.+ . +|.|.
T Consensus 36 l~~~g~Cr~C~v~v~g~~~~~~~aC~~~ 63 (603)
T TIGR01973 36 LSIAGNCRMCLVEVEKFPDKPVASCATP 63 (603)
T ss_pred CCCCCccccCEEEECCCCCCcccccCCC
Confidence 455688999999999964 2 88654
No 269
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=22.08 E-value=37 Score=37.26 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=15.3
Q ss_pred hhhcccccccCCCcccCCC
Q psy5785 285 CILCACCSTSCPSYWWNGE 303 (340)
Q Consensus 285 CIlCg~C~saCP~~~~~~~ 303 (340)
|..||.|+++||++.....
T Consensus 186 ~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 186 SELSGNMIDLCPVGALTSK 204 (776)
T ss_pred CcccCCchhhCCccccccc
Confidence 4459999999999976654
No 270
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=21.69 E-value=37 Score=30.20 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=16.2
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|..+||...
T Consensus 85 ~~~~C~~C~~C~~~CP~~a 103 (181)
T PRK10330 85 MQERCIGCKTCVVACPYGA 103 (181)
T ss_pred ChhhCCCcchhhhhCCccC
Confidence 4567999999999999764
No 271
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=21.33 E-value=54 Score=33.48 Aligned_cols=20 Identities=20% Similarity=0.625 Sum_probs=17.8
Q ss_pred hhchhhhhhcccccccCCCc
Q psy5785 279 LDGLYECILCACCSTSCPSY 298 (340)
Q Consensus 279 ~~~~~~CIlCg~C~saCP~~ 298 (340)
-..+..|..|.-|+..||+.
T Consensus 29 ~r~~~iC~~Cr~C~~~Cpvf 48 (389)
T PRK15033 29 ARQMQICNACRYCEGFCAVF 48 (389)
T ss_pred HHHhHhCCCCCCccccCCCc
Confidence 33589999999999999998
No 272
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=21.32 E-value=71 Score=31.86 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=17.1
Q ss_pred chhhhhhcccccccCCCccc
Q psy5785 281 GLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~ 300 (340)
...+||.||-|..+||....
T Consensus 219 ~~~~ci~c~~c~~ac~~gav 238 (354)
T COG2768 219 DYEKCIGCGQCMEACPYGAV 238 (354)
T ss_pred chhhccchhhhhhhccCccc
Confidence 35789999999999998854
No 273
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=21.28 E-value=39 Score=37.53 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=17.1
Q ss_pred hhhhcccccccCCCcccCCCcc
Q psy5785 284 ECILCACCSTSCPSYWWNGEKY 305 (340)
Q Consensus 284 ~CIlCg~C~saCP~~~~~~~~f 305 (340)
+|-.||.|+++||++......|
T Consensus 190 ~~~~~G~cv~vCP~GAl~~k~~ 211 (847)
T PRK08166 190 ESEFSGNLVEVCPTGVFTDKTH 211 (847)
T ss_pred cChhhCChHhhCCchhcccccc
Confidence 3557999999999997765443
No 274
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=21.09 E-value=35 Score=33.90 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=16.6
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
..+.|+.||-|..+||..+
T Consensus 199 d~~~Ci~Cg~Ci~~Cp~~~ 217 (317)
T COG2221 199 DGSKCIGCGKCIRACPKAA 217 (317)
T ss_pred ehhhccCccHHhhhCChhh
Confidence 6889999999999999543
No 275
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=20.78 E-value=34 Score=32.42 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=12.8
Q ss_pred ccccCccCcc--cccCCCcc
Q psy5785 156 GLYECILCAC--CSTSCPSY 173 (340)
Q Consensus 156 ~~~~CI~CG~--C~s~CP~~ 173 (340)
....|+.|+- |+.+||+.
T Consensus 96 ~~~~C~~C~~p~Cv~~CP~~ 115 (244)
T PRK14993 96 LPRLCNHCDNPPCVPVCPVQ 115 (244)
T ss_pred cchhcCCcCCccCccccCCC
Confidence 3556888884 88888753
No 276
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=20.56 E-value=32 Score=32.22 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=16.9
Q ss_pred hchhhhhhcccccccCCCcc
Q psy5785 280 DGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~ 299 (340)
.....|+.|+.|..+||...
T Consensus 171 id~~~C~~C~~C~~aCP~~a 190 (228)
T TIGR03294 171 VNQGLCMGCGTCAAACPTRA 190 (228)
T ss_pred EChhhCcChhHHHHhCCHhh
Confidence 35688999999999999663
No 277
>PRK13795 hypothetical protein; Provisional
Probab=20.16 E-value=33 Score=37.03 Aligned_cols=20 Identities=35% Similarity=0.869 Sum_probs=16.5
Q ss_pred ccccccCccCcccccCCCcc
Q psy5785 154 LDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~ 173 (340)
+.....|+.||.|..+||..
T Consensus 577 v~~~~~C~~Cg~C~~~CP~~ 596 (636)
T PRK13795 577 LRRAAECVGCGVCVGACPTG 596 (636)
T ss_pred EEccccCCCHhHHHHhCCcc
Confidence 44567899999999999954
No 278
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=20.13 E-value=34 Score=33.76 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=16.4
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|..|+.|..+||....
T Consensus 204 ~~fC~~C~~C~~~CP~~Ai 222 (314)
T TIGR02486 204 AKFCETCGKCADECPSGAI 222 (314)
T ss_pred cccCcchhHHHhhCCcccc
Confidence 3679999999999999854
No 279
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=20.07 E-value=44 Score=33.26 Aligned_cols=24 Identities=33% Similarity=0.877 Sum_probs=20.6
Q ss_pred ccccccCccCcccccCCCccccCC
Q psy5785 154 LDGLYECILCACCSTSCPSYWWNG 177 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~~ng 177 (340)
...+-.||.|-.|+.+|-+.|.|.
T Consensus 7 v~~l~kcigc~tcs~~ck~~wt~r 30 (321)
T TIGR03478 7 VIDLNKCIGCQTCTVACKNLWTNR 30 (321)
T ss_pred EeccccccccccchhhhhCcccCC
Confidence 456778999999999999998764
Done!