Query psy5785
Match_columns 340
No_of_seqs 263 out of 1908
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 17:54:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr8_B Iron-sulfur subunit of 100.0 3.2E-43 1.1E-47 334.9 15.5 223 24-340 9-237 (282)
2 2h88_B Succinate dehydrogenase 100.0 3.3E-32 1.1E-36 254.1 14.6 200 95-340 9-213 (252)
3 2bs2_B Quinol-fumarate reducta 100.0 6.6E-31 2.2E-35 243.1 13.3 195 98-339 5-205 (241)
4 3kwl_A Uncharacterized protein 100.0 4.4E-29 1.5E-33 254.9 10.3 166 96-340 23-192 (514)
5 2h88_B Succinate dehydrogenase 99.9 2E-29 6.7E-34 235.4 2.7 156 44-205 7-203 (252)
6 2wdq_B Succinate dehydrogenase 99.9 1.3E-26 4.4E-31 213.7 15.3 195 98-339 3-203 (238)
7 2bs2_B Quinol-fumarate reducta 99.9 1.4E-27 4.7E-32 220.8 2.9 150 47-204 3-195 (241)
8 3vr8_B Iron-sulfur subunit of 99.9 3.6E-27 1.2E-31 224.4 4.7 124 77-206 83-228 (282)
9 1kf6_B Fumarate reductase iron 99.9 6.7E-26 2.3E-30 209.5 12.6 189 98-335 6-197 (243)
10 3kwl_A Uncharacterized protein 99.9 1.9E-25 6.4E-30 228.1 7.8 139 45-208 21-184 (514)
11 2wdq_B Succinate dehydrogenase 99.9 1.5E-24 5.2E-29 199.8 2.0 145 47-199 1-188 (238)
12 1kf6_B Fumarate reductase iron 99.9 1.6E-23 5.5E-28 193.5 4.2 142 47-198 4-185 (243)
13 1rm6_C 4-hydroxybenzoyl-COA re 98.3 4.5E-07 1.5E-11 79.4 4.3 116 117-335 12-131 (161)
14 1t3q_A Quinoline 2-oxidoreduct 97.5 0.0001 3.6E-09 64.6 5.8 90 156-333 44-137 (168)
15 1rm6_C 4-hydroxybenzoyl-COA re 96.5 0.0007 2.4E-08 59.0 1.6 90 77-208 35-130 (161)
16 1ffv_A CUTS, iron-sulfur prote 94.2 0.048 1.6E-06 47.5 4.9 42 155-232 37-82 (163)
17 1t3q_A Quinoline 2-oxidoreduct 93.8 0.026 8.9E-07 49.1 2.5 37 157-208 101-137 (168)
18 1n62_A Carbon monoxide dehydro 92.8 0.11 3.9E-06 45.2 4.9 41 156-232 38-82 (166)
19 3i9v_9 NADH-quinone oxidoreduc 86.2 0.12 4.2E-06 43.9 -0.4 61 232-299 3-67 (182)
20 1jb0_C Photosystem I iron-sulf 80.5 0.31 1.1E-05 35.6 -0.2 18 282-299 44-61 (80)
21 3i9v_9 NADH-quinone oxidoreduc 76.9 0.45 1.5E-05 40.3 -0.3 18 282-299 95-112 (182)
22 1rof_A Ferredoxin; electron tr 76.2 0.71 2.4E-05 31.4 0.7 18 281-298 6-23 (60)
23 2fgo_A Ferredoxin; allochromat 75.5 0.69 2.3E-05 34.2 0.5 16 283-298 6-21 (82)
24 2fdn_A Ferredoxin; electron tr 75.3 0.8 2.7E-05 31.1 0.7 18 282-299 5-22 (55)
25 3eun_A Ferredoxin; electron tr 74.7 0.66 2.2E-05 34.5 0.2 15 283-297 6-20 (82)
26 2fdn_A Ferredoxin; electron tr 74.3 0.68 2.3E-05 31.4 0.1 17 283-299 35-51 (55)
27 1rgv_A Ferredoxin; electron tr 74.1 0.68 2.3E-05 34.1 0.1 16 283-298 6-21 (80)
28 1xer_A Ferredoxin; electron tr 74.0 0.7 2.4E-05 35.5 0.2 18 282-299 80-97 (103)
29 1rof_A Ferredoxin; electron tr 74.0 1.2 4.2E-05 30.1 1.5 16 157-172 7-22 (60)
30 1f2g_A Ferredoxin II; electron 73.9 0.59 2E-05 31.9 -0.3 16 283-298 6-21 (58)
31 7fd1_A FD1, protein (7-Fe ferr 73.8 0.92 3.2E-05 35.4 0.8 18 283-300 37-54 (106)
32 1jb0_C Photosystem I iron-sulf 73.5 0.62 2.1E-05 33.9 -0.3 18 282-299 7-24 (80)
33 1dwl_A Ferredoxin I; electron 73.3 0.84 2.9E-05 30.9 0.4 17 282-298 6-22 (59)
34 1rgv_A Ferredoxin; electron tr 73.2 1.4 4.8E-05 32.3 1.7 17 157-173 5-21 (80)
35 2zvs_A Uncharacterized ferredo 73.0 0.94 3.2E-05 33.8 0.7 16 283-298 6-21 (85)
36 1xer_A Ferredoxin; electron tr 72.9 0.64 2.2E-05 35.8 -0.3 19 281-299 41-59 (103)
37 1dax_A Ferredoxin I; electron 72.6 0.6 2.1E-05 32.6 -0.5 18 281-298 7-24 (64)
38 1iqz_A Ferredoxin; iron-sulfer 72.5 0.64 2.2E-05 34.4 -0.4 18 281-298 7-24 (81)
39 1sj1_A Ferredoxin; thermostabi 71.9 0.67 2.3E-05 32.2 -0.4 18 281-298 7-24 (66)
40 1dwl_A Ferredoxin I; electron 71.1 1.6 5.6E-05 29.4 1.5 16 157-172 6-21 (59)
41 2fgo_A Ferredoxin; allochromat 70.9 1.6 5.3E-05 32.2 1.5 17 157-173 5-21 (82)
42 3eun_A Ferredoxin; electron tr 69.6 1.5 5.3E-05 32.4 1.2 17 157-173 5-21 (82)
43 1bc6_A 7-Fe ferredoxin; electr 69.4 0.8 2.7E-05 33.4 -0.5 18 283-300 37-54 (77)
44 2v2k_A Ferredoxin; iron, trans 69.3 1.3 4.5E-05 34.2 0.8 17 283-299 37-53 (105)
45 2zvs_A Uncharacterized ferredo 69.3 2.8 9.4E-05 31.2 2.6 17 157-173 5-21 (85)
46 1h98_A Ferredoxin; electron tr 69.1 0.96 3.3E-05 33.2 -0.1 18 282-299 36-53 (78)
47 1iqz_A Ferredoxin; iron-sulfer 67.8 1 3.6E-05 33.2 -0.1 17 283-299 49-65 (81)
48 7fd1_A FD1, protein (7-Fe ferr 67.2 1.7 5.8E-05 33.8 1.0 19 157-175 36-54 (106)
49 1dax_A Ferredoxin I; electron 65.5 1.2 4.2E-05 31.0 -0.1 17 283-299 42-58 (64)
50 1sj1_A Ferredoxin; thermostabi 64.1 1.4 4.6E-05 30.6 -0.1 16 157-172 8-23 (66)
51 1f2g_A Ferredoxin II; electron 61.3 1.4 4.9E-05 29.9 -0.4 17 283-299 38-54 (58)
52 2v2k_A Ferredoxin; iron, trans 61.1 2.6 8.9E-05 32.5 1.0 19 157-175 36-54 (105)
53 3gyx_B Adenylylsulfate reducta 61.0 1.9 6.4E-05 37.0 0.2 17 283-299 44-60 (166)
54 2w3s_A Xanthine dehydrogenase; 60.9 1.1 3.9E-05 44.8 -1.4 50 155-240 34-96 (462)
55 1jnr_B Adenylylsulfate reducta 60.7 1.9 6.5E-05 36.3 0.2 17 283-299 45-61 (150)
56 3hrd_D Nicotinate dehydrogenas 59.5 2.1 7.2E-05 37.0 0.3 41 156-232 38-82 (160)
57 1vlb_A Aldehyde oxidoreductase 58.3 2.4 8.2E-05 45.9 0.5 43 154-232 34-81 (907)
58 1bc6_A 7-Fe ferredoxin; electr 56.0 3.4 0.00011 30.0 0.8 18 282-299 5-24 (77)
59 1hfe_L Protein (Fe-only hydrog 54.7 3.7 0.00013 40.3 1.2 19 282-300 63-81 (421)
60 1h98_A Ferredoxin; electron tr 50.0 3.9 0.00013 29.7 0.3 18 282-299 5-24 (78)
61 1ffv_A CUTS, iron-sulfur prote 48.9 3.4 0.00012 35.7 -0.2 25 77-101 36-66 (163)
62 1hfe_L Protein (Fe-only hydrog 47.6 3.7 0.00013 40.3 -0.2 19 281-299 31-49 (421)
63 1n62_A Carbon monoxide dehydro 45.9 4 0.00014 35.3 -0.2 25 77-101 36-66 (166)
64 2c42_A Pyruvate-ferredoxin oxi 44.5 4.5 0.00015 45.2 -0.1 19 281-299 684-702 (1231)
65 2gmh_A Electron transfer flavo 43.3 4.6 0.00016 41.0 -0.3 21 155-175 548-568 (584)
66 2gmh_A Electron transfer flavo 42.0 5.7 0.00019 40.3 0.2 19 281-299 549-567 (584)
67 1ti6_B Pyrogallol hydroxytrans 42.0 8.5 0.00029 35.6 1.4 21 154-174 7-27 (274)
68 3cf4_A Acetyl-COA decarboxylas 41.9 5.2 0.00018 42.8 -0.1 19 281-299 451-469 (807)
69 3c8y_A Iron hydrogenase 1; dit 39.6 5.7 0.00019 40.5 -0.3 19 282-300 187-205 (574)
70 1dgj_A Aldehyde oxidoreductase 39.6 5.3 0.00018 43.2 -0.5 43 154-232 34-81 (907)
71 2c42_A Pyruvate-ferredoxin oxi 38.1 6.3 0.00022 44.1 -0.2 17 281-297 740-756 (1231)
72 3mm5_B Sulfite reductase, diss 37.9 7 0.00024 37.6 0.1 18 281-298 237-254 (366)
73 1jnr_B Adenylylsulfate reducta 37.8 6.5 0.00022 32.9 -0.1 19 281-299 6-29 (150)
74 3cf4_A Acetyl-COA decarboxylas 37.7 6.6 0.00022 42.0 -0.2 19 281-299 413-431 (807)
75 3gyx_B Adenylylsulfate reducta 37.0 6.7 0.00023 33.4 -0.2 18 282-299 6-28 (166)
76 1vlb_A Aldehyde oxidoreductase 35.2 7.9 0.00027 41.9 -0.1 25 77-101 34-64 (907)
77 2ivf_B Ethylbenzene dehydrogen 34.5 7.9 0.00027 37.4 -0.2 16 283-298 182-197 (352)
78 3or1_B Sulfite reductase beta; 34.4 7.7 0.00026 37.7 -0.3 18 281-298 254-271 (386)
79 2vpz_B NRFC protein; oxidoredu 33.8 8.2 0.00028 33.7 -0.2 21 154-174 7-27 (195)
80 2vpz_B NRFC protein; oxidoredu 33.6 5.1 0.00017 35.1 -1.6 20 280-299 8-27 (195)
81 1kqf_B FDH-N beta S, formate d 32.2 10 0.00035 35.3 0.2 20 154-173 33-52 (294)
82 3i9v_3 NADH-quinone oxidoreduc 32.1 7.8 0.00027 41.0 -0.7 18 284-301 219-236 (783)
83 3or1_B Sulfite reductase beta; 32.1 8.8 0.0003 37.3 -0.3 21 155-175 253-273 (386)
84 3mm5_B Sulfite reductase, diss 31.3 9.1 0.00031 36.8 -0.3 21 155-175 236-256 (366)
85 1ti6_B Pyrogallol hydroxytrans 31.0 16 0.00055 33.7 1.3 20 155-174 94-113 (274)
86 3c8y_A Iron hydrogenase 1; dit 30.3 11 0.00037 38.4 0.0 20 156-175 186-205 (574)
87 1h0h_B Formate dehydrogenase ( 29.7 7.3 0.00025 34.5 -1.2 16 281-296 7-22 (214)
88 1q16_B Respiratory nitrate red 28.1 12 0.00041 38.0 -0.1 14 284-297 216-229 (512)
89 1kqf_B FDH-N beta S, formate d 27.6 7.6 0.00026 36.2 -1.6 21 278-298 32-52 (294)
90 3hrd_D Nicotinate dehydrogenas 25.3 12 0.00041 32.2 -0.6 25 77-101 36-66 (160)
91 1gte_A Dihydropyrimidine dehyd 25.2 14 0.00047 40.2 -0.3 15 283-297 984-998 (1025)
92 3kvp_A Uncharacterized protein 24.3 27 0.00092 26.1 1.2 12 49-60 38-49 (72)
93 3mm5_A Sulfite reductase, diss 24.0 15 0.00053 36.1 -0.2 20 281-300 282-301 (418)
94 3mm5_A Sulfite reductase, diss 23.5 19 0.00063 35.6 0.3 22 155-176 281-302 (418)
95 3i9v_3 NADH-quinone oxidoreduc 23.4 17 0.00058 38.4 -0.0 18 159-176 219-236 (783)
96 3j16_B RLI1P; ribosome recycli 22.1 16 0.00056 37.5 -0.4 17 157-173 52-68 (608)
97 1gte_A Dihydropyrimidine dehyd 21.3 19 0.00064 39.2 -0.2 15 158-172 984-998 (1025)
No 1
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=100.00 E-value=3.2e-43 Score=334.91 Aligned_cols=223 Identities=49% Similarity=0.945 Sum_probs=182.7
Q ss_pred hhhhhHHHHHhhhh--hcCCCCCCCcceEEEEEecCCCCCCCCCceeeeccccchhhhhhhcccccccccCCcccceeEE
Q psy5785 24 AKNIRSFQLSAAAS--SAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKNIRSFQLSAAASSAVPAEKPAKYKTFA 101 (340)
Q Consensus 24 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~lafr~sCrecam~iNG~p~ac~tl~ 101 (340)
.++++.++.+++++ +++++++.+++++|+||||||+.++++||||+|+|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~R~~p~~~~~~p~~~~~~v~v~-------------------------- 62 (282)
T 3vr8_B 9 CRSLELVTQAARYASAATAAAPTGKRIKTFEIYRFNPEEPGAKPKLQKFDVDLD-------------------------- 62 (282)
T ss_pred HHHHHHHHHHHHhhhhccCcccCCCeeEEEEEEEeCCCCCCCCCCcEEEEEEeC--------------------------
Confidence 45666666555555 56667778899999999999986677899999987721
Q ss_pred eeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCccccCCCc
Q psy5785 102 IYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWWNGEK 179 (340)
Q Consensus 102 I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ng~~ 179 (340)
+ -+++|++ +|.+++.. .+.. +.+..+| +.||+|.+. +||
T Consensus 63 --~---------------------~~~tlLd--aL~~i~~~-----~~pt--l~~~~~C~~G~CGsC~V~-----InG-- 103 (282)
T 3vr8_B 63 --K---------------------CGTMVLD--ALIKIKNE-----VDPT--LTFRRSCREGICGSCAMN-----IAG-- 103 (282)
T ss_pred --C---------------------CCCcHHH--HHHhcCcc-----cCCc--eeecCCCCCCCCCCCEEE-----ECC--
Confidence 0 0235566 66555532 2233 6677789 899999887 998
Q ss_pred cCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccC-CCCceEEEeCCCCceeeecccChhHHHHHHHhcCCccc
Q psy5785 180 YLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDA-NDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQ 258 (340)
Q Consensus 180 flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~-~~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~p~l~ 258 (340)
.. .++|.+.+.+ .++.++||||++||||||||||+++||++|++++|||+
T Consensus 104 -------------------------~~----~laC~t~v~~~~~~~~tIepL~~~pVikDLvvD~~~f~~~~~~v~p~l~ 154 (282)
T 3vr8_B 104 -------------------------EN----TLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQ 154 (282)
T ss_pred -------------------------EE----ecchhhhHhHhcCCcEEeccCCCCceeeccccccHHHHHHHHHHhhhcC
Confidence 34 6689999875 46789999999999999999999999999999999999
Q ss_pred CCCC-CCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhhcCCC
Q psy5785 259 RDKE-NIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPF 337 (340)
Q Consensus 259 ~~~~-~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l~~~~ 337 (340)
.++. ..++.+++|+|+++++++.+..||+||+|+++||+++.+++.|+||+++++++|++.|+||+.+.+||+.+.+.+
T Consensus 155 ~~~~~~~~~~~~~qs~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lGP~~li~a~r~~~d~rd~~~~erl~~l~~~~ 234 (282)
T 3vr8_B 155 KKTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGF 234 (282)
T ss_pred CCCCCCCCchhcccCHHHHHHHHhhhhCcccCcCcccCCceeccCCcCCCHHHHHHHHHHHhCCcccchHHHHHHHhhcC
Confidence 8765 345678999999999999999999999999999999877678999999999999999999999999999887777
Q ss_pred CCC
Q psy5785 338 SVY 340 (340)
Q Consensus 338 ~~~ 340 (340)
|+|
T Consensus 235 ~l~ 237 (282)
T 3vr8_B 235 SAF 237 (282)
T ss_pred Ccc
Confidence 876
No 2
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=99.98 E-value=3.3e-32 Score=254.12 Aligned_cols=200 Identities=62% Similarity=1.138 Sum_probs=165.8
Q ss_pred ccceeEEeeccCCCCCCC-CCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCC
Q psy5785 95 AKYKTFAIYRWNPDKPDE-KPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCP 171 (340)
Q Consensus 95 ~ac~tl~I~r~~p~lp~~-~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP 171 (340)
...++++|+||+|+. +. .|+++.+.|+..+-+++|++ ++.+++.. .++. +.+..+| +.||+|...
T Consensus 9 ~~~~~~~i~R~~~~~-~~~~~~~~~~~v~~~~~~~tlLd--~l~~~~~~-----~~p~--l~~~~~c~~g~Cg~C~v~-- 76 (252)
T 2h88_B 9 SRIKKFSIYRWDPDK-PGDKPRMQTYEVDLNKCGPMVLD--ALIKIKNE-----LDST--LTFRRSCREGICGSCAMN-- 76 (252)
T ss_dssp CCEEEEEEEECCTTS-TTSCCEEEEEEEEGGGSCSBHHH--HHHHHHHH-----TCTT--CCCCCSCSSSSSCTTEEE--
T ss_pred CceEEEEEEEeCCCC-CCCCceEEEEEEecCCCCChHHH--HHHHhCcc-----cCCC--ccccCCCCCCCCCCCEEE--
Confidence 345789999999865 33 79999999998763458888 87776532 2223 6677789 899999988
Q ss_pred ccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC-CCceEEEeCCCCceeeecccChhHHHHHH
Q psy5785 172 SYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQY 250 (340)
Q Consensus 172 ~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~-~~~~~I~pL~~~pvikDLvvD~~~~~~~~ 250 (340)
+|| .. .++|.+.+.+. ++.++||||++||||||||||+++|++++
T Consensus 77 ---i~G---------------------------~~----~~aC~~~~~~~~g~~~~iepl~~~pvikDLvvD~~~~~~~~ 122 (252)
T 2h88_B 77 ---IAG---------------------------GN----TLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQY 122 (252)
T ss_dssp ---ETT---------------------------EE----EEGGGSBCCCCTTSCEEEECSTTCBEEETTEECCHHHHHHH
T ss_pred ---ECC---------------------------cE----EccccCCHhHcCCCceEEecccCCCccccceeccHHHHHHh
Confidence 898 23 56899999886 55899999999999999999999999999
Q ss_pred HhcCCcccCCCCC-CCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHH
Q psy5785 251 KSIQPWLQRDKEN-IGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 329 (340)
Q Consensus 251 ~~~~p~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~r 329 (340)
++++||+...+.. .+..+.+++|++++++..+..||.||+|+++||+...++..|+||+.+++++|++.|+|++.+.+|
T Consensus 123 ~~i~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r 202 (252)
T 2h88_B 123 KSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEER 202 (252)
T ss_dssp HHTCCSCCCSCCTTTTSSCCCCCHHHHHTTTTTTTCCCCCTTGGGCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred hhccCccccCCCCCCccccccCCHHHHHHhHhHHhchhhCcchhhCCCCccCCCCcCCHHHHHHHHHHhhCCcccchHHH
Confidence 9999999876541 234468899999999999999999999999999997654579999999999999999999988999
Q ss_pred HHhhcCCCCCC
Q psy5785 330 LNQLKDPFSVY 340 (340)
Q Consensus 330 l~~l~~~~~~~ 340 (340)
+..+.++.++|
T Consensus 203 ~~~~~~~~~~~ 213 (252)
T 2h88_B 203 LAQLQDPFSLY 213 (252)
T ss_dssp HHTTCSTTTTT
T ss_pred HHHHhcccCCC
Confidence 98776555543
No 3
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=99.97 E-value=6.6e-31 Score=243.08 Aligned_cols=195 Identities=23% Similarity=0.432 Sum_probs=162.8
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
.+++|+||+|+.....|+++.+.|+.++ +.+|++ ++.+++.. .+.. +.+.++| +.||+|... +
T Consensus 5 ~~~~i~R~~~~~~~~~~~~~~~~v~~~~-~~tlL~--~l~~~~~~-----~~~~--l~~~~~c~~g~Cg~C~v~-----i 69 (241)
T 2bs2_B 5 LTIRVFKYDPQSAVSKPHFQEYKIEEAP-SMTIFI--VLNMIRET-----YDPD--LNFDFVCRAGICGSCGMM-----I 69 (241)
T ss_dssp EEEEEEECCTTCTTCCCEEEEEEEECCT-TCBHHH--HHHHHHHH-----TCTT--CCCCCSSSSSSSCTTEEE-----E
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEeCCC-CChHHH--HHHHhchh-----cCCC--CccCCCCCCCCCCCCEeE-----E
Confidence 6889999998642168999999999987 678998 88777643 2333 6778889 899999988 8
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC-CCceEEEeCCCCceeeecccChhHHHHHH-Hhc
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQY-KSI 253 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~-~~~~~I~pL~~~pvikDLvvD~~~~~~~~-~~~ 253 (340)
|| .. .++|.+.+.++ ++.++||||++|||||||+||+++|++++ +++
T Consensus 70 ~G---------------------------~~----~~aC~~~~~~~~g~~~~ie~l~~~pvikDLvvD~~~~~~~~~~~~ 118 (241)
T 2bs2_B 70 NG---------------------------RP----SLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRV 118 (241)
T ss_dssp TT---------------------------EE----EEGGGCBGGGCTTSEEEEECCTTSEEEETTEEECHHHHHHHHHHT
T ss_pred CC---------------------------Ce----ecchhCcHhHcCCCeEEEecCCCCCcceeceeeCHHHHHHHHHHh
Confidence 87 23 47899999886 46799999999999999999999999999 999
Q ss_pred CCcccCCCCCCCccccc-CCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCC-CCCcHHHHHH
Q psy5785 254 QPWLQRDKENIGNAQYL-QSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDS-RDEKTADRLN 331 (340)
Q Consensus 254 ~p~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~-Rd~~~~~rl~ 331 (340)
+||+..++...+..+.+ +++++++++..+..||.||+|+++||+...+. .|+||+.++++|+++.|+ |+....+|+.
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~-~~~~p~~~~~~~~~~~~~~r~~~~~~~~~ 197 (241)
T 2bs2_B 119 ESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRE-DFVGAAGLNRVVRFMIDPHDERTDEDYYE 197 (241)
T ss_dssp TCSCCCSSCCCTTSCCCCCCHHHHHHHHHHHTCCCCCHHHHTCHHHHHCT-TCCHHHHHHHHHHHHTCTTCCCCHHHHHH
T ss_pred cCeeccCCCCCCccccccCCHHHHHHhhhhhhhhccCcCcccCCCCccCC-CCCCHHHHHHHHHHhhCccccccHHHHHH
Confidence 99998876433334455 99999999999999999999999999998654 799999999999999999 8888889988
Q ss_pred hhcCCCCC
Q psy5785 332 QLKDPFSV 339 (340)
Q Consensus 332 ~l~~~~~~ 339 (340)
.+.+..++
T Consensus 198 ~~~~~~~~ 205 (241)
T 2bs2_B 198 LIGDDDGV 205 (241)
T ss_dssp HHCSTTTG
T ss_pred HHhcccCc
Confidence 77555544
No 4
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=99.95 E-value=4.4e-29 Score=254.91 Aligned_cols=166 Identities=17% Similarity=0.261 Sum_probs=138.2
Q ss_pred cceeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccCccCcccccCCCcccc
Q psy5785 96 KYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 96 ac~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~ 175 (340)
...+++|+||+|+. +..|++++|.||.++ .++|++ +|.+|+ + +.+++ +|.+. +
T Consensus 23 ~~~~~~i~R~~p~~-~~~p~~~~y~v~~~~-~~~vLd--~L~~ik----------~--l~fr~------sCam~-----I 75 (514)
T 3kwl_A 23 LKLHVKVFRFETNK-DYNPAYESYFLEYQE-DQYLLD--LLKQLK----------G--VSYSE------NIALK-----I 75 (514)
T ss_dssp CEEEEEEEECBTTS-CSCCEEEEEEEECCT-TCBHHH--HHTTST----------T--CCCCS------SCCEE-----E
T ss_pred eEEEEEEEEeCCCC-CCCCceEEEEEeCCC-CCcHHH--HHHHhh----------h--Ceeec------cceEE-----E
Confidence 34678999999965 568999999999988 668999 998887 1 45554 55555 9
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCCCCceEEEeCCCCceeeecccChhHHHHHHHhc--
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSI-- 253 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~-- 253 (340)
|| ...|. ...|.+.+.++++.|+|+||++||||||||||+++||++|++|
T Consensus 76 NG---------------------------~~~la-~t~~~~~~~~~~~~i~iePl~~~pvikDLvvD~~~f~~~~~~i~~ 127 (514)
T 3kwl_A 76 NQ---------------------------IAVFE-DAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKAVLKNYEDFFK 127 (514)
T ss_dssp TT---------------------------EEECS-CCBHHHHHHHHCSEEEEECSCSTTEEETTEECHHHHHGGGHHHHH
T ss_pred CC---------------------------Eehhh-hhhHHHHhhccCCcEEEEECCCCcccccceeccHHHHHHHHHhhc
Confidence 99 56555 5556555554467899999999999999999999999999999
Q ss_pred -CCcccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHh
Q psy5785 254 -QPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQ 332 (340)
Q Consensus 254 -~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~ 332 (340)
+||++ |+|+++++.+ | +|+++||+. + .+|+||++|+++|||+.|+||+.+ +||+.
T Consensus 128 ~~p~~~--------------~~~~~~~~~~---~---~C~~aCp~~--~-~~f~Gpa~l~~a~r~~~d~rd~~~-~rl~~ 183 (514)
T 3kwl_A 128 QVPYIT--------------KGEKEELEKF---I---QINFINPQT--N-PKYLGDGFFLYVKWLMKRYPTERD-RLLEM 183 (514)
T ss_dssp TCTTSC--------------HHHHHGGGGT---G---GGGGTCCCC--C-TTCCCHHHHHHHHHHHHHCGGGHH-HHHHH
T ss_pred CCCCCC--------------HHHHHHHhhc---C---hhhccCCCC--C-cccCcHHHHHHHHHHhcCCcchHH-HHHHH
Confidence 99984 5788888887 3 999999995 4 579999999999999999999998 99999
Q ss_pred h-cCCCCCC
Q psy5785 333 L-KDPFSVY 340 (340)
Q Consensus 333 l-~~~~~~~ 340 (340)
| .+++|||
T Consensus 184 l~~~~~gv~ 192 (514)
T 3kwl_A 184 ISQPESGVM 192 (514)
T ss_dssp TCCTTTSGG
T ss_pred hhcCccccc
Confidence 9 5678886
No 5
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=99.95 E-value=2e-29 Score=235.36 Aligned_cols=156 Identities=50% Similarity=0.929 Sum_probs=118.2
Q ss_pred CCCcceEEEEEecCCCCCCCCCceeeeccccc---h----------------hhhhhhccc-----ccccccCCcc-cce
Q psy5785 44 KPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN---I----------------RSFQLSAAA-----SSAVPAEKPA-KYK 98 (340)
Q Consensus 44 ~~~~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~---~----------------lafr~sCre-----cam~iNG~p~-ac~ 98 (340)
+.+++++|+||||||+.++++|+|++|+|+.. . |.|+++|++ |+|.|||++. +|.
T Consensus 7 ~~~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~ 86 (252)
T 2h88_B 7 ATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACT 86 (252)
T ss_dssp -CCCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTEEEEGGG
T ss_pred CCCceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCcEEcccc
Confidence 34688999999999986444899999999852 1 579999988 5789999987 886
Q ss_pred eE---------EeeccCCCCCCCCCceEEEEEecccc-------cccccccchhhhcchhcccCCchhhhcccccccCcc
Q psy5785 99 TF---------AIYRWNPDKPDEKPTMQEYKVDLNNQ-------LNFSARSSHATAISNAQYLQSLDDRKKLDGLYECIL 162 (340)
Q Consensus 99 tl---------~I~r~~p~lp~~~PvikDLvVD~s~~-------~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~ 162 (340)
|. +|+|+ .+||+++||+||++.+ ++|+..... ......+.++++++.+.+.....||.
T Consensus 87 ~~~~~~~g~~~~iepl-----~~~pvikDLvvD~~~~~~~~~~i~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~Ci~ 160 (252)
T 2h88_B 87 KKIDPDLSKTTKIYPL-----PHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDE-SKQGKEQYLQSIEDRQKLDGLYECIL 160 (252)
T ss_dssp SBCCCCTTSCEEEECS-----TTCBEEETTEECCHHHHHHHHHTCCSCCCSCC-TTTTSSCCCCCHHHHHTTTTTTTCCC
T ss_pred CCHhHcCCCceEEecc-----cCCCccccceeccHHHHHHhhhccCccccCCC-CCCccccccCCHHHHHHhHhHHhchh
Confidence 54 45554 3699999999998763 344422100 00111235677888888889999999
Q ss_pred CcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhh
Q psy5785 163 CACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 205 (340)
Q Consensus 163 CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl 205 (340)
||.|+++||+++++++.|+||+.+++++|+..|+||+.+.+|+
T Consensus 161 CG~C~~~CP~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r~ 203 (252)
T 2h88_B 161 CACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERL 203 (252)
T ss_dssp CCTTGGGCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred hCcchhhCCCCccCCCCcCCHHHHHHHHHHhhCCcccchHHHH
Confidence 9999999999988777899999999999999988775444443
No 6
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=99.94 E-value=1.3e-26 Score=213.74 Aligned_cols=195 Identities=45% Similarity=0.825 Sum_probs=158.8
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccc-cccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQ-LNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYW 174 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~-~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~ 174 (340)
++++|+||+|+. +..|+++.+.|+.++- ..+|++ ++.+++.. ++. +.+..+| +.||+|...
T Consensus 3 ~~~~i~R~~~~~-~~~~~~~~~~v~~~~~~~~tll~--~l~~~~~~------~~~--l~~~~~C~~g~Cg~C~v~----- 66 (238)
T 2wdq_B 3 LEFSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLD--ALIQLKEK------DPS--LSFRRSCREGVCGSDGLN----- 66 (238)
T ss_dssp EEEEEEECCTTT-CSSCEEEEEEEECCTTCCCBHHH--HHHHHHHH------CTT--CCCCCSSSSSSSCTTEEE-----
T ss_pred EEEEEEEcCCCC-CCCCceEEEEeecCCCCCChHHH--HHHHhccc------CCC--ccccccCCCCCCCCCEEE-----
Confidence 578999999864 4689999999998752 458888 77666532 223 7778889 899999988
Q ss_pred cCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccC--C-CCceEEEeCCCCceeeecccChhHHHHHHH
Q psy5785 175 WNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDA--N-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYK 251 (340)
Q Consensus 175 ~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~--~-~~~~~I~pL~~~pvikDLvvD~~~~~~~~~ 251 (340)
+|| .. .++|.+.+.+ . +..++||||.++|+|+||+||++.|+++++
T Consensus 67 v~G---------------------------~~----~laC~~~~~~~g~~~~~~~ie~l~~~pvi~dlv~d~~~~~~~l~ 115 (238)
T 2wdq_B 67 MNG---------------------------KN----GLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYE 115 (238)
T ss_dssp ETT---------------------------EE----EEGGGCBGGGTCCTTSCEEEECCTTSBEEETTEECCHHHHHHHH
T ss_pred ECC---------------------------EE----EcccccchhhhccCCCCEEEeeCCCCcchhhceechHHHHHHHH
Confidence 888 33 4689999987 3 334999999999999999999999999999
Q ss_pred hcCCcccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHH
Q psy5785 252 SIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLN 331 (340)
Q Consensus 252 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~ 331 (340)
++++|+..++...++.++.+++++.+.+.....||.||.|+++||+...+...|+||+.+.+++|++.|+|+..+.+|+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~ 195 (238)
T 2wdq_B 116 KIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLD 195 (238)
T ss_dssp HTCCSCCCCCSSCCSSSCCCCHHHHHTTTTTTTCCCCCTTGGGCHHHHHCTTTSCCHHHHHHHHHHHTCTTCCCHHHHHH
T ss_pred hhcCccccCcCCCCcccccCCHHHHHHHhccccccccCCchhhCcCCccCCCCCCCHHHHHHHHHHHhCCcccchHHHHH
Confidence 99999987653213346788999999999999999999999999998765445999999999999989999988888887
Q ss_pred hhcCCCCC
Q psy5785 332 QLKDPFSV 339 (340)
Q Consensus 332 ~l~~~~~~ 339 (340)
.+.++.++
T Consensus 196 ~~~~~~~~ 203 (238)
T 2wdq_B 196 GLSDAFSV 203 (238)
T ss_dssp TTCSTTTT
T ss_pred HHhccCCC
Confidence 66544443
No 7
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=99.93 E-value=1.4e-27 Score=220.81 Aligned_cols=150 Identities=22% Similarity=0.406 Sum_probs=113.0
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-cceeE--
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKTF-- 100 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~tl-- 100 (340)
+++||+||||||+..+.+|||++|+|+... |.|+++|++ |+|.|||+++ +|.|.
T Consensus 3 ~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~~~~~ 82 (241)
T 2bs2_B 3 RMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTK 82 (241)
T ss_dssp CEEEEEEEECCTTCTTCCCEEEEEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBGG
T ss_pred ceEEEEEEEeCCCCCCCCceEEEEEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEECCCeecchhCcHh
Confidence 679999999999763268999999998631 579999987 5789999988 88643
Q ss_pred -------EeeccCCCCCCCCCceEEEEEecccccccc-cccchhhhcc-------hhccc-CCchhhhcccccccCccCc
Q psy5785 101 -------AIYRWNPDKPDEKPTMQEYKVDLNNQLNFS-ARSSHATAIS-------NAQYL-QSLDDRKKLDGLYECILCA 164 (340)
Q Consensus 101 -------~I~r~~p~lp~~~PvikDLvVD~s~~~~~v-~~~~~l~~i~-------~~e~~-~~~e~~~~l~~~~~CI~CG 164 (340)
+|+|+ .+||+++||+||++++...+ .. ...++. ..+.+ +++++.+.+.....||.||
T Consensus 83 ~~~g~~~~ie~l-----~~~pvikDLvvD~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg 155 (241)
T 2bs2_B 83 DFEDGVITLLPL-----PAFKLIKDLSVDTGNWFNGMSQR--VESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECG 155 (241)
T ss_dssp GCTTSEEEEECC-----TTSEEEETTEEECHHHHHHHHHH--TTCSCCCSSCCCTTSCCCCCCHHHHHHHHHHHTCCCCC
T ss_pred HcCCCeEEEecC-----CCCCcceeceeeCHHHHHHHHHH--hcCeeccCCCCCCccccccCCHHHHHHhhhhhhhhccC
Confidence 45554 36999999999998852222 22 111221 11233 6677777778889999999
Q ss_pred ccccCCCccccCCCccCChHHHHHHHHHhhCC-cchhHHHh
Q psy5785 165 CCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDS-RDEKTADR 204 (340)
Q Consensus 165 ~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~Dp-RD~~~~~R 204 (340)
.|+.+||+++++ .+|+||++++++|||..|+ ||....+|
T Consensus 156 ~C~~~CP~~~~~-~~~~~p~~~~~~~~~~~~~~r~~~~~~~ 195 (241)
T 2bs2_B 156 CCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHDERTDEDY 195 (241)
T ss_dssp HHHHTCHHHHHC-TTCCHHHHHHHHHHHHTCTTCCCCHHHH
T ss_pred cCcccCCCCccC-CCCCCHHHHHHHHHHhhCccccccHHHH
Confidence 999999999887 4799999999999999988 66443333
No 8
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=99.93 E-value=3.6e-27 Score=224.38 Aligned_cols=124 Identities=45% Similarity=0.830 Sum_probs=99.5
Q ss_pred hhhhhhccc-----ccccccCCcc-cceeE---------EeeccCCCCCCCCCceEEEEEeccc-------ccccccccc
Q psy5785 77 RSFQLSAAA-----SSAVPAEKPA-KYKTF---------AIYRWNPDKPDEKPTMQEYKVDLNN-------QLNFSARSS 134 (340)
Q Consensus 77 lafr~sCre-----cam~iNG~p~-ac~tl---------~I~r~~p~lp~~~PvikDLvVD~s~-------~~~~v~~~~ 134 (340)
++|+++|++ |+|.|||++. +|.|. +|+| + .+||++|||+||++. +++|+..+.
T Consensus 83 l~~~~~C~~G~CGsC~V~InG~~~laC~t~v~~~~~~~~tIep----L-~~~pVikDLvvD~~~f~~~~~~v~p~l~~~~ 157 (282)
T 3vr8_B 83 LTFRRSCREGICGSCAMNIAGENTLACICNIDQNTSKTTKIYP----L-PHMFVIKDLVPDMNLFYAQYASIQPWLQKKT 157 (282)
T ss_pred eeecCCCCCCCCCCCEEEECCEEecchhhhHhHhcCCcEEecc----C-CCCceeeccccccHHHHHHHHHHhhhcCCCC
Confidence 899999877 6899999988 88654 4555 4 469999999999987 455654311
Q ss_pred hhhhcchhcccCCchhhhcccccccCccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhh
Q psy5785 135 HATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLN 206 (340)
Q Consensus 135 ~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~ 206 (340)
. ....+.+.+|+++++++++.++.||.||+|.++||++++|+++|+||++++++|||++|+||+.+.+|++
T Consensus 158 ~-~~~~~~~~~qs~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lGP~~li~a~r~~~d~rd~~~~erl~ 228 (282)
T 3vr8_B 158 K-INLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLA 228 (282)
T ss_pred C-CCCCchhcccCHHHHHHHHhhhhCcccCcCcccCCceeccCCcCCCHHHHHHHHHHHhCCcccchHHHHH
Confidence 0 1122346789999999999999999999999999999999889999999999999999999865444443
No 9
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=99.93 E-value=6.7e-26 Score=209.51 Aligned_cols=189 Identities=24% Similarity=0.458 Sum_probs=156.3
Q ss_pred eeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCcccc
Q psy5785 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWW 175 (340)
Q Consensus 98 ~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ 175 (340)
.+++|+||+|+. +..|+++.+.|+..+ +.+|++ ++..++.. .... +.+..+| +.||+|... +
T Consensus 6 ~~~~i~R~~~~~-~~~~~~~~~~~~~~~-~~tll~--al~~~~~~-----~~p~--l~~~~~c~~G~Cg~C~v~-----v 69 (243)
T 1kf6_B 6 LKIEVVRYNPEV-DTAPHSAFYEVPYDA-TTSLLD--ALGYIKDN-----LAPD--LSYRWSCRMAICGSCGMM-----V 69 (243)
T ss_dssp EEEEEEECCTTT-CSSCEEEEEEEEECT-TCBHHH--HHHHHHHH-----TCTT--CCCCCCCSSSSSCCCEEE-----E
T ss_pred EEEEEEEcCCCC-CCCCeeEEEEEecCC-CChHHH--HHHHcCcc-----cCCC--cccccCCCCCcCCCCEeE-----E
Confidence 689999999864 468999999999987 678988 87666532 2333 6677889 999999988 8
Q ss_pred CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCCCCceEEEeCCCCceeeecccChhHHHHHHHhcCC
Q psy5785 176 NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQP 255 (340)
Q Consensus 176 ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~p 255 (340)
|| .. .++|.+.+.++.+.++|+||++|+++|||++|++.|+++++.++|
T Consensus 70 ~G---------------------------~~----~~aC~~~~~~~~~~~~i~~l~~~~~~kdl~~dl~~~~~~~~~~~~ 118 (243)
T 1kf6_B 70 NN---------------------------VP----KLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKP 118 (243)
T ss_dssp TT---------------------------EE----EEGGGCBGGGCTTCEEEECCTTSCEEETTEECCHHHHHHHHHTCC
T ss_pred CC---------------------------EE----EeeeeeEHhhCCCcEEEEecCCCCccceeEEecHHHHHHHHhcCC
Confidence 87 23 678999998875579999999999999999999999999999999
Q ss_pred cccCCCCCCCccc-ccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhhc
Q psy5785 256 WLQRDKENIGNAQ-YLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334 (340)
Q Consensus 256 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l~ 334 (340)
|+..+.. .++.+ ..+++++.+.+.....||.||.|+++||....+. .|+||+++.+++|+..|+|+..+.+|+..+.
T Consensus 119 ~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~-~~~gP~~~~~~~r~~~~~~~~~~~~~~~~~~ 196 (243)
T 1kf6_B 119 YIIGNSR-TADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP-EFIGPAAITLAHRYNEDSRDHGKKERMAQLN 196 (243)
T ss_dssp SCCSCCC-CGGGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHHHHHCT-TSCCHHHHHHHHHHHTCTTCCCTHHHHHHHH
T ss_pred eeccCcC-CCccccccCCHHHHHHhhhhhhccccCccccccCCCcccC-CCCCHHHHHHHHHHhhCccccchHHHHHHHh
Confidence 9976543 22334 7788999999999999999999999999987654 4999999999999999999887677776553
Q ss_pred C
Q psy5785 335 D 335 (340)
Q Consensus 335 ~ 335 (340)
+
T Consensus 197 ~ 197 (243)
T 1kf6_B 197 S 197 (243)
T ss_dssp S
T ss_pred c
Confidence 3
No 10
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=99.91 E-value=1.9e-25 Score=228.11 Aligned_cols=139 Identities=14% Similarity=0.232 Sum_probs=108.9
Q ss_pred CCcceEEEEEecCCCCCCCCCceeeeccccch-------------hhhhhhcccccccccCCcc-c---c--------ee
Q psy5785 45 PAKYKTFAIYRWNPDKPDEKPTMQEYKTAKNI-------------RSFQLSAAASSAVPAEKPA-K---Y--------KT 99 (340)
Q Consensus 45 ~~~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~-------------lafr~sCrecam~iNG~p~-a---c--------~t 99 (340)
..+++||+||||||+. +.+|+||+|+|+.+. ++||+ .|||+|||+|+ + | .+
T Consensus 21 ~~~~~~~~i~R~~p~~-~~~p~~~~y~v~~~~~~~vLd~L~~ik~l~fr~---sCam~ING~~~la~t~~~~~~~~~~~~ 96 (514)
T 3kwl_A 21 SVLKLHVKVFRFETNK-DYNPAYESYFLEYQEDQYLLDLLKQLKGVSYSE---NIALKINQIAVFEDAKVSDLVAFFSKE 96 (514)
T ss_dssp CCCEEEEEEEECBTTS-CSCCEEEEEEEECCTTCBHHHHHTTSTTCCCCS---SCCEEETTEEECSCCBHHHHHHHHCSE
T ss_pred cceEEEEEEEEeCCCC-CCCCceEEEEEeCCCCCcHHHHHHHhhhCeeec---cceEEECCEehhhhhhHHHHhhccCCc
Confidence 3467999999999975 779999999998642 68887 68999999997 5 3 25
Q ss_pred EEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchhhhcccccccCccCcccccCCCccccCCCc
Q psy5785 100 FAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEK 179 (340)
Q Consensus 100 l~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~CI~CG~C~s~CP~~~~ng~~ 179 (340)
++|+|+ .+||++|||+||++.+...+.. . ++...+ ++++++++++.. | ||+++||++ | .+
T Consensus 97 i~iePl-----~~~pvikDLvvD~~~f~~~~~~--i---~~~~p~-~~~~~~~~~~~~---~---~C~~aCp~~--~-~~ 156 (514)
T 3kwl_A 97 WVLDPL-----SKRYALKDLMIDEKAVLKNYED--F---FKQVPY-ITKGEKEELEKF---I---QINFINPQT--N-PK 156 (514)
T ss_dssp EEEECS-----CSTTEEETTEECHHHHHGGGHH--H---HHTCTT-SCHHHHHGGGGT---G---GGGGTCCCC--C-TT
T ss_pred EEEEEC-----CCCcccccceeccHHHHHHHHH--h---hcCCCC-CCHHHHHHHhhc---C---hhhccCCCC--C-cc
Confidence 678886 3599999999999985544432 1 111122 236677777776 3 999999994 6 67
Q ss_pred cCChHHHHHHHHHhhCCcchhHHHhhhcc
Q psy5785 180 YLGPAVLMQAYRWIIDSRDEKTADRLNQL 208 (340)
Q Consensus 180 flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l 208 (340)
|+||++|+|||||..|+||+.+ +|++.|
T Consensus 157 f~Gpa~l~~a~r~~~d~rd~~~-~rl~~l 184 (514)
T 3kwl_A 157 YLGDGFFLYVKWLMKRYPTERD-RLLEMI 184 (514)
T ss_dssp CCCHHHHHHHHHHHHHCGGGHH-HHHHHT
T ss_pred cCcHHHHHHHHHHhcCCcchHH-HHHHHh
Confidence 9999999999999999999988 999887
No 11
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=99.89 E-value=1.5e-24 Score=199.85 Aligned_cols=145 Identities=41% Similarity=0.754 Sum_probs=109.0
Q ss_pred cceEEEEEecCCCCCCCCCceeeecccc----ch---------------hhhhhhccc-----ccccccCCcc-cceeE-
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAK----NI---------------RSFQLSAAA-----SSAVPAEKPA-KYKTF- 100 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~----~~---------------lafr~sCre-----cam~iNG~p~-ac~tl- 100 (340)
+.++|+||||||+. +.+|||++|+|+. +. ++|+++||+ |+|.|||++. +|.|.
T Consensus 1 ~~~~~~i~R~~~~~-~~~~~~~~~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~ 79 (238)
T 2wdq_B 1 MRLEFSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPI 79 (238)
T ss_dssp CEEEEEEEECCTTT-CSSCEEEEEEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBG
T ss_pred CeEEEEEEEcCCCC-CCCCceEEEEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEECCEEEcccccch
Confidence 35899999999975 6689999999975 32 589999995 6889999987 88654
Q ss_pred ----------EeeccCCCCCCCCCceEEEEEecccccccccccchhhhc-------chhcccCCchhhhcccccccCccC
Q psy5785 101 ----------AIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAI-------SNAQYLQSLDDRKKLDGLYECILC 163 (340)
Q Consensus 101 ----------~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i-------~~~e~~~~~e~~~~l~~~~~CI~C 163 (340)
+|++ + .++|+++||+||++.+...+.+ ...++ ...+..+++++.+.+.....||.|
T Consensus 80 ~~~g~~~~~~~ie~----l-~~~pvi~dlv~d~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~C 152 (238)
T 2wdq_B 80 SALNQPGKKIVIRP----L-PGLPVIRDLVVDMGQFYAQYEK--IKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILC 152 (238)
T ss_dssp GGTCCTTSCEEEEC----C-TTSBEEETTEECCHHHHHHHHH--TCCSCCCCCSSCCSSSCCCCHHHHHTTTTTTTCCCC
T ss_pred hhhccCCCCEEEee----C-CCCcchhhceechHHHHHHHHh--hcCccccCcCCCCcccccCCHHHHHHHhcccccccc
Confidence 3444 3 2699999999998873111211 11111 112344566667778888999999
Q ss_pred cccccCCCccccCCCccCChHHHHHHHHHhhCCcch
Q psy5785 164 ACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDE 199 (340)
Q Consensus 164 G~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~ 199 (340)
|.|+.+||++.++++.|+||+.+++++|+..|+++.
T Consensus 153 g~C~~~CP~~~~~~~~~~~p~~~~~~~r~~~~~~~~ 188 (238)
T 2wdq_B 153 ACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDT 188 (238)
T ss_dssp CTTGGGCHHHHHCTTTSCCHHHHHHHHHHHTCTTCC
T ss_pred CCchhhCcCCccCCCCCCCHHHHHHHHHHHhCCccc
Confidence 999999999988766699999999999998887664
No 12
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=99.87 E-value=1.6e-23 Score=193.53 Aligned_cols=142 Identities=25% Similarity=0.444 Sum_probs=107.2
Q ss_pred cceEEEEEecCCCCCCCCCceeeeccccch------------------hhhhhhccc-----ccccccCCcc-cceeE--
Q psy5785 47 KYKTFAIYRWNPDKPDEKPTMQEYKTAKNI------------------RSFQLSAAA-----SSAVPAEKPA-KYKTF-- 100 (340)
Q Consensus 47 ~~~~~~I~R~~P~~~~~~p~~q~Y~v~~~~------------------lafr~sCre-----cam~iNG~p~-ac~tl-- 100 (340)
++++|+||||||+. +.+|+|++|+|+... +.|+++|++ |.|.|||++. +|.|.
T Consensus 4 m~~~~~i~R~~~~~-~~~~~~~~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~~~~aC~~~~~ 82 (243)
T 1kf6_B 4 KNLKIEVVRYNPEV-DTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLR 82 (243)
T ss_dssp EEEEEEEEECCTTT-CSSCEEEEEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGGCBGG
T ss_pred ceEEEEEEEcCCCC-CCCCeeEEEEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEECCEEEeeeeeEHh
Confidence 45999999999974 669999999998531 568888877 5789999987 88654
Q ss_pred ------EeeccCCCCCCCCCceEEEEEecccc-------cccccccchhhhcchhc-ccCCchhhhcccccccCccCccc
Q psy5785 101 ------AIYRWNPDKPDEKPTMQEYKVDLNNQ-------LNFSARSSHATAISNAQ-YLQSLDDRKKLDGLYECILCACC 166 (340)
Q Consensus 101 ------~I~r~~p~lp~~~PvikDLvVD~s~~-------~~~v~~~~~l~~i~~~e-~~~~~e~~~~l~~~~~CI~CG~C 166 (340)
+|+|+ +.+|+++|+++|++.+ ++|+.. .... .+.+ ..+++++.+.+.....||.||.|
T Consensus 83 ~~~~~~~i~~l-----~~~~~~kdl~~dl~~~~~~~~~~~~~~~~--~~~~-p~~~~~~~~~~~~~~~~~~~~Ci~Cg~C 154 (243)
T 1kf6_B 83 DYTDGMKVEAL-----ANFPIERDLVVDMTHFIESLEAIKPYIIG--NSRT-ADQGTNIQTPAQMAKYHQFSGCINCGLC 154 (243)
T ss_dssp GCTTCEEEECC-----TTSCEEETTEECCHHHHHHHHHTCCSCCS--CCCC-GGGCCCCCCHHHHHTTGGGGCCCCCCHH
T ss_pred hCCCcEEEEec-----CCCCccceeEEecHHHHHHHHhcCCeecc--CcCC-CccccccCCHHHHHHhhhhhhccccCcc
Confidence 56664 4699999999998863 222211 0000 0112 44556666677888999999999
Q ss_pred ccCCCccccCCCccCChHHHHHHHHHhhCCcc
Q psy5785 167 STSCPSYWWNGEKYLGPAVLMQAYRWIIDSRD 198 (340)
Q Consensus 167 ~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD 198 (340)
+.+||+..++++ |+||+++.+++|+..|+||
T Consensus 155 ~~~CP~~~~~~~-~~gP~~~~~~~r~~~~~~~ 185 (243)
T 1kf6_B 155 YAACPQFGLNPE-FIGPAAITLAHRYNEDSRD 185 (243)
T ss_dssp HHHCHHHHHCTT-SCCHHHHHHHHHHHTCTTC
T ss_pred ccccCCCcccCC-CCCHHHHHHHHHHhhCccc
Confidence 999999988754 9999999999999887765
No 13
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.28 E-value=4.5e-07 Score=79.38 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=78.7
Q ss_pred EEEEEecccccccccccchhhhcchhcccCCchhhhcccccccC--ccCcccccCCCccccCCCccCChHHHHHHHHHhh
Q psy5785 117 QEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYEC--ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWII 194 (340)
Q Consensus 117 kDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~~~~l~~~~~C--I~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~ 194 (340)
+.+.|+..+ ..+|++ .|..... .+.....| +.||+|... +||
T Consensus 12 ~~~~v~~~~-~~tLL~--~Lr~~~g-----------l~g~k~gC~~G~CGaCtV~-----vdG----------------- 55 (161)
T 1rm6_C 12 RAREDLVPD-NMLLLD--YLRETVG-----------LTGTKQGCDGGECGACTVL-----VDD----------------- 55 (161)
T ss_dssp EEEEEEEET-TCBHHH--HHHHTTC-----------CTTSCCCSSSSSSCTTEEE-----ETT-----------------
T ss_pred EEEEEecCC-cCcHHH--HHHHcCC-----------CcccccCCCCCCCCCCEEE-----ECC-----------------
Confidence 445565555 456766 5543211 13445679 999999988 887
Q ss_pred CCcchhHHHhhhccCCCccccccccCC--CCceEEEeCCCCceeeecccChhHHHHHHHhcCCcccCCCCCCCcccccCC
Q psy5785 195 DSRDEKTADRLNQLKDPFSVYSKIDAN--DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQS 272 (340)
Q Consensus 195 DpRD~~~~~Rl~~l~~~~~c~~~~~~~--~~~~~I~pL~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~ 272 (340)
.. ..+|.+.+.+. ..+++||||.++++ ++
T Consensus 56 ----------~~----v~sC~~~~~~~~G~~v~TiEgL~~~~~-----------------------------------~~ 86 (161)
T 1rm6_C 56 ----------RP----RLACSTLAHQVAGKKVETVESLATQGT-----------------------------------LS 86 (161)
T ss_dssp ----------EE----EEGGGSBGGGGTTSEEECGGGSSBTTB-----------------------------------CC
T ss_pred ----------cE----EechHHHHHHhCCceEEEECCCCCCCc-----------------------------------cC
Confidence 34 77899998873 45789999988775 22
Q ss_pred HHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHHHHHHHHhcCCCCCcHHHHHHhhcC
Q psy5785 273 LDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335 (340)
Q Consensus 273 ~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l~ka~r~~~D~Rd~~~~~rl~~l~~ 335 (340)
|.+...++ ..+++||.|++. .++++++++.|+++ .++++++...+
T Consensus 87 p~q~a~~~--~~~~qCG~Ctpg---------------~im~a~~ll~~~~~-pt~~~i~~~l~ 131 (161)
T 1rm6_C 87 KLQAAFHE--KLGTQCGFCTPG---------------MIMASEALLRKNPS-PSRDEIKAALA 131 (161)
T ss_dssp HHHHHHHH--HTCCSSCSSHHH---------------HHHHHHHHHHHCSS-CCHHHHHHHTT
T ss_pred HHHHHHHH--hCCCcCCCCchH---------------HHHHHHHHHhcCCC-CCHHHHHHHHc
Confidence 33333332 456999999972 78899999999988 55677765543
No 14
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=97.52 E-value=0.0001 Score=64.56 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=63.6
Q ss_pred ccccC--ccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccC--CCCceEEEeCC
Q psy5785 156 GLYEC--ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDA--NDKVSKIYPLP 231 (340)
Q Consensus 156 ~~~~C--I~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~--~~~~~~I~pL~ 231 (340)
....| +.||+|... +|| .. ..+|.+.+.+ +..+++||||.
T Consensus 44 ~~~~C~~G~CGaC~V~-----vdG---------------------------~~----v~sC~~~~~~~~G~~v~Tiegl~ 87 (168)
T 1t3q_A 44 TKIGCEQGVCGSCTIL-----IDG---------------------------AP----MRSCLTLAVQAEGCSIETVEGLS 87 (168)
T ss_dssp SCCSCSSSSSCTTEEE-----ETT---------------------------EE----EEGGGSBGGGGTTCEEECGGGTC
T ss_pred cccCCCCCCCCCcEEE-----ECC---------------------------CE----eechhhHHHHhCCCeEEEEcCCC
Confidence 44678 999999988 887 33 6789999887 34578999998
Q ss_pred CCceeeecccChhHHHHHHHhcCCcccCCCCCCCcccccCCHHHHHHhhchhhhhhcccccccCCCcccCCCccccHHHH
Q psy5785 232 HMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVL 311 (340)
Q Consensus 232 ~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~~~~~~flGPa~l 311 (340)
+++- ++|.+...+ ...++.||.|. |..+
T Consensus 88 ~~~~-----------------------------------~~~~q~a~~--~~~~~qCG~C~---------------pg~i 115 (168)
T 1t3q_A 88 QGEK-----------------------------------LNALQDSFR--RHHALQCGFCT---------------AGML 115 (168)
T ss_dssp CSSS-----------------------------------CCHHHHHHH--HTTCCSSCSSH---------------HHHH
T ss_pred Cccc-----------------------------------cCHHHHHHH--HhCCCcCCCch---------------HHHH
Confidence 7651 122222222 34568999999 8899
Q ss_pred HHHHHHhcCCCCCcHHHHHHhh
Q psy5785 312 MQAYRWIIDSRDEKTADRLNQL 333 (340)
Q Consensus 312 ~ka~r~~~D~Rd~~~~~rl~~l 333 (340)
+.+++++.++++...++..+.+
T Consensus 116 ~~a~~ll~~~~~p~~~~i~~~l 137 (168)
T 1t3q_A 116 ATARSILAENPAPSRDEVREVM 137 (168)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHG
T ss_pred HHHHHHHhcCCCCCHHHHHHHH
Confidence 9999998888875544444444
No 15
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=96.52 E-value=0.0007 Score=59.01 Aligned_cols=90 Identities=10% Similarity=0.081 Sum_probs=51.8
Q ss_pred hhhhhhccc-----ccccccCCcc-cceeEEeeccCCCCCCCCCceEEEEEecccccccccccchhhhcchhcccCCchh
Q psy5785 77 RSFQLSAAA-----SSAVPAEKPA-KYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDD 150 (340)
Q Consensus 77 lafr~sCre-----cam~iNG~p~-ac~tl~I~r~~p~lp~~~PvikDLvVD~s~~~~~v~~~~~l~~i~~~e~~~~~e~ 150 (340)
..++++|++ |.|.|||++. +|.+.. ...+ + . . ++-.+. +... ..+.+.+
T Consensus 35 ~g~k~gC~~G~CGaCtV~vdG~~v~sC~~~~-~~~~----G-~---~--v~TiEg----------L~~~----~~~~p~q 89 (161)
T 1rm6_C 35 TGTKQGCDGGECGACTVLVDDRPRLACSTLA-HQVA----G-K---K--VETVES----------LATQ----GTLSKLQ 89 (161)
T ss_dssp TTSCCCSSSSSSCTTEEEETTEEEEGGGSBG-GGGT----T-S---E--EECGGG----------SSBT----TBCCHHH
T ss_pred cccccCCCCCCCCCCEEEECCcEEechHHHH-HHhC----C-c---e--EEEECC----------CCCC----CccCHHH
Confidence 578999988 5799999988 997653 2221 1 0 0 011111 1000 0111222
Q ss_pred hhcccccccCccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhcc
Q psy5785 151 RKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 208 (340)
Q Consensus 151 ~~~l~~~~~CI~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l 208 (340)
. ......++.||.|.. ..++++|+|..|++|...++-.+.+
T Consensus 90 ~--a~~~~~~~qCG~Ctp---------------g~im~a~~ll~~~~~pt~~~i~~~l 130 (161)
T 1rm6_C 90 A--AFHEKLGTQCGFCTP---------------GMIMASEALLRKNPSPSRDEIKAAL 130 (161)
T ss_dssp H--HHHHHTCCSSCSSHH---------------HHHHHHHHHHHHCSSCCHHHHHHHT
T ss_pred H--HHHHhCCCcCCCCch---------------HHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 2 233345799999985 3899999999998885433333344
No 16
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=94.22 E-value=0.048 Score=47.52 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=31.8
Q ss_pred cccccC--ccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC--CCceEEEeC
Q psy5785 155 DGLYEC--ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN--DKVSKIYPL 230 (340)
Q Consensus 155 ~~~~~C--I~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~--~~~~~I~pL 230 (340)
.....| +.||+|... +|| .. ..+|.+.+.+. ..+++||+|
T Consensus 37 g~k~gC~~G~CGaCtV~-----vdG---------------------------~~----v~sC~~~~~~~~G~~I~TiEgL 80 (163)
T 1ffv_A 37 GAHIGCETSHCGACTVD-----IDG---------------------------RS----VKSCTHLAVQCDGSEVLTVEGL 80 (163)
T ss_dssp TSCCCCSSSCSCTTEEE-----ETT---------------------------EE----EEGGGSBGGGGTTCEEECGGGT
T ss_pred ccccCCCCCCCCCCEEE-----ECC---------------------------cE----ecchHhhHHHhCCceEEEECCC
Confidence 345579 999999988 887 34 77899998843 457889998
Q ss_pred CC
Q psy5785 231 PH 232 (340)
Q Consensus 231 ~~ 232 (340)
.+
T Consensus 81 ~~ 82 (163)
T 1ffv_A 81 AN 82 (163)
T ss_dssp SB
T ss_pred CC
Confidence 64
No 17
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=93.82 E-value=0.026 Score=49.14 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=27.6
Q ss_pred cccCccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhcc
Q psy5785 157 LYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 208 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l 208 (340)
...++.||.|. |..++++|+|..+++|...++..+.+
T Consensus 101 ~~~~~qCG~C~---------------pg~i~~a~~ll~~~~~p~~~~i~~~l 137 (168)
T 1t3q_A 101 RHHALQCGFCT---------------AGMLATARSILAENPAPSRDEVREVM 137 (168)
T ss_dssp HTTCCSSCSSH---------------HHHHHHHHHHHHHCSSCCHHHHHHHG
T ss_pred HhCCCcCCCch---------------HHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 45569999998 88999999999887775544444444
No 18
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=92.81 E-value=0.11 Score=45.22 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=31.3
Q ss_pred ccccC--ccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC--CCceEEEeCC
Q psy5785 156 GLYEC--ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN--DKVSKIYPLP 231 (340)
Q Consensus 156 ~~~~C--I~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~--~~~~~I~pL~ 231 (340)
....| ..||+|... +|| .. ..+|.+.+.+. ..+++||+|.
T Consensus 38 ~k~gC~~G~CGaCtV~-----vdG---------------------------~~----v~SC~~~~~~~~G~~V~TiEgL~ 81 (166)
T 1n62_A 38 AHIGCDTSHCGACTVD-----LDG---------------------------MS----VKSCTMFAVQANGASITTIEGMA 81 (166)
T ss_dssp SCCCCSSSCSCTTEEE-----ETT---------------------------EE----EEGGGSBGGGGTTCEEECGGGSS
T ss_pred cccCCCCCCCCCCEEE-----ECC---------------------------cE----EechhhhHHHhCCceEEEeCCCC
Confidence 35578 999999988 887 34 77899998743 4578899996
Q ss_pred C
Q psy5785 232 H 232 (340)
Q Consensus 232 ~ 232 (340)
+
T Consensus 82 ~ 82 (166)
T 1n62_A 82 A 82 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 19
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=86.19 E-value=0.12 Score=43.94 Aligned_cols=61 Identities=18% Similarity=0.422 Sum_probs=18.0
Q ss_pred CCceeeecccChhHHHHHHHhcCCcccCCCCCC----CcccccCCHHHHHHhhchhhhhhcccccccCCCcc
Q psy5785 232 HMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENI----GNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 232 ~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~CIlCg~C~saCP~~~ 299 (340)
-..++++|.++...++.+...++ |-....... +....... -.....|+.||.|+.+||...
T Consensus 3 l~~~~~~l~~~~~~~~~~~~t~~-yp~~~~~~~~~~~g~~~~~~~------~~d~~~Ci~C~~C~~~CP~~a 67 (182)
T 3i9v_9 3 LKALAQSLGITLKYLFSKPVTVP-YPDAPVALKPRFHGRHVLTRH------PNGLEKCIGCSLCAAACPAYA 67 (182)
T ss_dssp ------------------------CCSSCEECCTTCCCSEEECBC------TTSCBSCCCCCHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCcceE-CCCCCCCCCcccCCeEeeccC------CCCCccCcccccchhhCCccc
Confidence 34578889999888876543221 110000000 00001001 013568999999999999763
No 20
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=80.49 E-value=0.31 Score=35.57 Aligned_cols=18 Identities=33% Similarity=1.008 Sum_probs=15.8
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|+.+||...
T Consensus 44 ~~~C~~Cg~C~~~CP~~a 61 (80)
T 1jb0_C 44 TEDCVGCKRCETACPTDF 61 (80)
T ss_dssp GGGCCCCCHHHHHCCSSS
T ss_pred CCcCcCcCChhhhCCCCc
Confidence 467999999999999874
No 21
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=76.91 E-value=0.45 Score=40.33 Aligned_cols=18 Identities=33% Similarity=1.052 Sum_probs=15.9
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|+.+||...
T Consensus 95 ~~~C~~C~~C~~~CP~~A 112 (182)
T 3i9v_9 95 MLRCIFCGLCEEACPTGA 112 (182)
T ss_dssp TTTCCCCCHHHHHCSSSC
T ss_pred CCcCcChhChhhhCCccc
Confidence 567999999999999983
No 22
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=76.17 E-value=0.71 Score=31.43 Aligned_cols=18 Identities=33% Similarity=0.885 Sum_probs=15.4
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
+...|+.||.|+.+||..
T Consensus 6 ~~~~C~~C~~C~~~Cp~~ 23 (60)
T 1rof_A 6 DADACIGCGVCENLCPDV 23 (60)
T ss_dssp CTTTCCSCCSSTTTCTTT
T ss_pred chhhCCCChHHHHhCcHH
Confidence 346799999999999974
No 23
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=75.54 E-value=0.69 Score=34.24 Aligned_cols=16 Identities=38% Similarity=1.074 Sum_probs=9.9
Q ss_pred hhhhhcccccccCCCc
Q psy5785 283 YECILCACCSTSCPSY 298 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~ 298 (340)
..|+.||.|+.+||..
T Consensus 6 ~~C~~C~~C~~~CP~~ 21 (82)
T 2fgo_A 6 DDCINCDVCEPECPNG 21 (82)
T ss_dssp TTCCCCCTTGGGCTTC
T ss_pred CCCCChhhHHHHCChh
Confidence 4566666666666643
No 24
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=75.32 E-value=0.8 Score=31.07 Aligned_cols=18 Identities=33% Similarity=0.839 Sum_probs=15.5
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|..+||...
T Consensus 5 ~~~C~~C~~C~~~CP~~a 22 (55)
T 2fdn_A 5 NEACISCGACEPECPVNA 22 (55)
T ss_dssp CTTCCCCCTTGGGCTTCC
T ss_pred cccCcChhhHHHHCCccc
Confidence 467999999999999864
No 25
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=74.72 E-value=0.66 Score=34.48 Aligned_cols=15 Identities=47% Similarity=1.254 Sum_probs=7.6
Q ss_pred hhhhhcccccccCCC
Q psy5785 283 YECILCACCSTSCPS 297 (340)
Q Consensus 283 ~~CIlCg~C~saCP~ 297 (340)
..|+.||.|+.+||.
T Consensus 6 ~~C~~C~~C~~~CP~ 20 (82)
T 3eun_A 6 DECINCDVCEPECPN 20 (82)
T ss_dssp TTCCCCCTTGGGCTT
T ss_pred CCCcCccchHHHCCh
Confidence 345555555555554
No 26
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=74.25 E-value=0.68 Score=31.44 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=14.9
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|..+||...
T Consensus 35 ~~C~~C~~C~~~CP~~a 51 (55)
T 2fdn_A 35 DTCIDCGACAGVCPVDA 51 (55)
T ss_dssp TTCCCCCHHHHTCTTCC
T ss_pred ccCcChhChHHHccccc
Confidence 56999999999999863
No 27
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=74.10 E-value=0.68 Score=34.10 Aligned_cols=16 Identities=31% Similarity=1.024 Sum_probs=10.0
Q ss_pred hhhhhcccccccCCCc
Q psy5785 283 YECILCACCSTSCPSY 298 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~ 298 (340)
..|+.||.|+.+||..
T Consensus 6 ~~C~~C~~C~~~CP~~ 21 (80)
T 1rgv_A 6 DDCTACDACVEECPNE 21 (80)
T ss_dssp SCCCCCCTTTTTCTTC
T ss_pred CCCcChhhHHHHcChh
Confidence 4566666666666653
No 28
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=74.05 E-value=0.7 Score=35.54 Aligned_cols=18 Identities=33% Similarity=0.862 Sum_probs=15.7
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|+.+||...
T Consensus 80 ~~~C~~Cg~C~~~CP~~A 97 (103)
T 1xer_A 80 EQACIFCMACVNVCPVAA 97 (103)
T ss_dssp GGGCCCCCHHHHHCTTCC
T ss_pred cccccChhhHHHhccccc
Confidence 467999999999999863
No 29
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=73.95 E-value=1.2 Score=30.14 Aligned_cols=16 Identities=38% Similarity=1.016 Sum_probs=14.1
Q ss_pred cccCccCcccccCCCc
Q psy5785 157 LYECILCACCSTSCPS 172 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~ 172 (340)
...|+.||.|+.+||.
T Consensus 7 ~~~C~~C~~C~~~Cp~ 22 (60)
T 1rof_A 7 ADACIGCGVCENLCPD 22 (60)
T ss_dssp TTTCCSCCSSTTTCTT
T ss_pred hhhCCCChHHHHhCcH
Confidence 4569999999999996
No 30
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=73.92 E-value=0.59 Score=31.94 Aligned_cols=16 Identities=31% Similarity=1.078 Sum_probs=14.7
Q ss_pred hhhhhcccccccCCCc
Q psy5785 283 YECILCACCSTSCPSY 298 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~ 298 (340)
..|+.||.|+.+||..
T Consensus 6 ~~C~~C~~C~~~CP~~ 21 (58)
T 1f2g_A 6 DDCMACEACVEICPDV 21 (58)
T ss_dssp TTCCCCCHHHHHCTTT
T ss_pred CcCccchHHHHhCCcc
Confidence 7899999999999984
No 31
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=73.75 E-value=0.92 Score=35.36 Aligned_cols=18 Identities=44% Similarity=0.921 Sum_probs=15.4
Q ss_pred hhhhhcccccccCCCccc
Q psy5785 283 YECILCACCSTSCPSYWW 300 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~~ 300 (340)
..|+.||.|..+||....
T Consensus 37 ~~C~~Cg~C~~~CP~~ai 54 (106)
T 7fd1_A 37 DECIDCALCEPECPAQAI 54 (106)
T ss_dssp TTCCCCCTTGGGCTTCCE
T ss_pred ccCCChhhhHHhCCChhh
Confidence 459999999999998743
No 32
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=73.50 E-value=0.62 Score=33.89 Aligned_cols=18 Identities=33% Similarity=0.824 Sum_probs=15.7
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|+.+||...
T Consensus 7 ~~~C~~Cg~C~~~CP~~a 24 (80)
T 1jb0_C 7 YDTCIGCTQCVRACPTDV 24 (80)
T ss_dssp ETTCCCCCHHHHHCTTCC
T ss_pred CCcCcChhHHHHHCCccc
Confidence 467999999999999764
No 33
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=73.32 E-value=0.84 Score=30.93 Aligned_cols=17 Identities=41% Similarity=0.944 Sum_probs=14.5
Q ss_pred hhhhhhcccccccCCCc
Q psy5785 282 LYECILCACCSTSCPSY 298 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~ 298 (340)
...|+.||.|+.+||..
T Consensus 6 ~~~C~~C~~C~~~Cp~~ 22 (59)
T 1dwl_A 6 HEECIGCESCVELCPEV 22 (59)
T ss_dssp SCCCSSCCGGGGTSTTT
T ss_pred hhhCcChhHHHHHCCHH
Confidence 46799999999999953
No 34
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=73.20 E-value=1.4 Score=32.33 Aligned_cols=17 Identities=29% Similarity=0.905 Sum_probs=14.7
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...|+.||.|+.+||..
T Consensus 5 ~~~C~~C~~C~~~CP~~ 21 (80)
T 1rgv_A 5 NDDCTACDACVEECPNE 21 (80)
T ss_dssp CSCCCCCCTTTTTCTTC
T ss_pred CCCCcChhhHHHHcChh
Confidence 45799999999999974
No 35
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=72.99 E-value=0.94 Score=33.85 Aligned_cols=16 Identities=38% Similarity=1.065 Sum_probs=10.8
Q ss_pred hhhhhcccccccCCCc
Q psy5785 283 YECILCACCSTSCPSY 298 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~ 298 (340)
..|+.||.|+.+||..
T Consensus 6 ~~C~~C~~C~~~CP~~ 21 (85)
T 2zvs_A 6 KKCINCDMCEPECPNE 21 (85)
T ss_dssp TTCCCCCTTTTTCTTC
T ss_pred CcCcChhHHHHHCchh
Confidence 4577777777777754
No 36
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=72.95 E-value=0.64 Score=35.76 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=16.2
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+...|+.||.|+.+||...
T Consensus 41 d~~~C~~Cg~C~~~CP~~a 59 (103)
T 1xer_A 41 DFDLCIADGSCINACPVNV 59 (103)
T ss_dssp ETTTCCCCCHHHHHCTTCC
T ss_pred ehhhCCChhhHHHHcCccC
Confidence 4578999999999999754
No 37
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=72.60 E-value=0.6 Score=32.63 Aligned_cols=18 Identities=33% Similarity=0.743 Sum_probs=14.9
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
+...|+.||.|+.+||..
T Consensus 7 d~~~C~~Cg~C~~~CP~~ 24 (64)
T 1dax_A 7 DQDECIACESCVEIAPGA 24 (64)
T ss_dssp CSTTCCSCCHHHHHCTTT
T ss_pred ccccCCCchHHHHhCCcc
Confidence 346899999999999943
No 38
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=72.53 E-value=0.64 Score=34.41 Aligned_cols=18 Identities=28% Similarity=0.805 Sum_probs=15.3
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
+...|+.||.|+.+||..
T Consensus 7 d~~~CigCg~C~~~CP~~ 24 (81)
T 1iqz_A 7 DKETCIACGACGAAAPDI 24 (81)
T ss_dssp CTTTCCCCSHHHHHCTTT
T ss_pred ecccCcccChhhHhCchh
Confidence 357899999999999943
No 39
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=71.90 E-value=0.67 Score=32.22 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.3
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
+...|+.||.|+.+||..
T Consensus 7 d~~~C~~C~~C~~~Cp~~ 24 (66)
T 1sj1_A 7 DQDTCIGDAICASLCPDV 24 (66)
T ss_dssp CTTTCCCCCHHHHHCTTT
T ss_pred CcccCcCchHHHHhCCce
Confidence 346799999999999963
No 40
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=71.10 E-value=1.6 Score=29.40 Aligned_cols=16 Identities=44% Similarity=1.026 Sum_probs=13.9
Q ss_pred cccCccCcccccCCCc
Q psy5785 157 LYECILCACCSTSCPS 172 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~ 172 (340)
...|+.||.|+.+||.
T Consensus 6 ~~~C~~C~~C~~~Cp~ 21 (59)
T 1dwl_A 6 HEECIGCESCVELCPE 21 (59)
T ss_dssp SCCCSSCCGGGGTSTT
T ss_pred hhhCcChhHHHHHCCH
Confidence 4569999999999995
No 41
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=70.93 E-value=1.6 Score=32.23 Aligned_cols=17 Identities=35% Similarity=0.985 Sum_probs=14.7
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...|+.||.|+.+||..
T Consensus 5 ~~~C~~C~~C~~~CP~~ 21 (82)
T 2fgo_A 5 TDDCINCDVCEPECPNG 21 (82)
T ss_dssp CTTCCCCCTTGGGCTTC
T ss_pred CCCCCChhhHHHHCChh
Confidence 45699999999999974
No 42
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=69.63 E-value=1.5 Score=32.39 Aligned_cols=17 Identities=41% Similarity=1.003 Sum_probs=14.8
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...|+.||.|+.+||..
T Consensus 5 ~~~C~~C~~C~~~CP~~ 21 (82)
T 3eun_A 5 TDECINCDVCEPECPNG 21 (82)
T ss_dssp CTTCCCCCTTGGGCTTC
T ss_pred CCCCcCccchHHHCChh
Confidence 45699999999999974
No 43
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=69.38 E-value=0.8 Score=33.43 Aligned_cols=18 Identities=33% Similarity=0.767 Sum_probs=15.5
Q ss_pred hhhhhcccccccCCCccc
Q psy5785 283 YECILCACCSTSCPSYWW 300 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~~ 300 (340)
..|+.||.|+.+||....
T Consensus 37 ~~C~~Cg~C~~~CP~~ai 54 (77)
T 1bc6_A 37 DVCIDCGACEAVCPVSAI 54 (77)
T ss_dssp TTCCSCCSHHHHSGGGSS
T ss_pred ccCcCccCCHhhcCccce
Confidence 569999999999998743
No 44
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=69.31 E-value=1.3 Score=34.22 Aligned_cols=17 Identities=35% Similarity=0.911 Sum_probs=15.1
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|+.+||...
T Consensus 37 ~~C~~Cg~C~~~CP~~A 53 (105)
T 2v2k_A 37 DECVDCGACEPVCPVEA 53 (105)
T ss_dssp TTCCCCCCSGGGCTTCC
T ss_pred CcCcchhhHHHhCCccC
Confidence 56999999999999864
No 45
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=69.30 E-value=2.8 Score=31.18 Aligned_cols=17 Identities=35% Similarity=0.977 Sum_probs=14.6
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
...|+.||.|+.+||..
T Consensus 5 ~~~C~~C~~C~~~CP~~ 21 (85)
T 2zvs_A 5 TKKCINCDMCEPECPNE 21 (85)
T ss_dssp CTTCCCCCTTTTTCTTC
T ss_pred CCcCcChhHHHHHCchh
Confidence 35699999999999964
No 46
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=69.11 E-value=0.96 Score=33.15 Aligned_cols=18 Identities=39% Similarity=0.877 Sum_probs=15.5
Q ss_pred hhhhhhcccccccCCCcc
Q psy5785 282 LYECILCACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~ 299 (340)
...|+.||.|+.+||...
T Consensus 36 ~~~C~~C~~C~~~CP~~A 53 (78)
T 1h98_A 36 PEECIDCGACVPACPVNA 53 (78)
T ss_dssp TTTCCCCCTHHHHCTTCC
T ss_pred cccCCcHhHHHHhCCccc
Confidence 356999999999999874
No 47
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=67.81 E-value=1 Score=33.20 Aligned_cols=17 Identities=12% Similarity=-0.089 Sum_probs=14.7
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|+.+||+..
T Consensus 49 ~~c~~C~~C~~~CP~~A 65 (81)
T 1iqz_A 49 ILIDDMMDAFEGCPTDS 65 (81)
T ss_dssp GGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHhCCHhH
Confidence 46999999999999974
No 48
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=67.20 E-value=1.7 Score=33.78 Aligned_cols=19 Identities=42% Similarity=0.833 Sum_probs=15.7
Q ss_pred cccCccCcccccCCCcccc
Q psy5785 157 LYECILCACCSTSCPSYWW 175 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ 175 (340)
...|+.||.|+.+||...+
T Consensus 36 ~~~C~~Cg~C~~~CP~~ai 54 (106)
T 7fd1_A 36 PDECIDCALCEPECPAQAI 54 (106)
T ss_dssp TTTCCCCCTTGGGCTTCCE
T ss_pred cccCCChhhhHHhCCChhh
Confidence 3459999999999998544
No 49
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=65.52 E-value=1.2 Score=30.97 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=14.3
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|+.+||...
T Consensus 42 ~~C~~C~~C~~~CP~~A 58 (64)
T 1dax_A 42 ASQEEVEEAMDTCPVQC 58 (64)
T ss_dssp SCHHHHHHHHHHSSSCC
T ss_pred cchhHHHHHHHhCCHhh
Confidence 45899999999999863
No 50
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=64.09 E-value=1.4 Score=30.58 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=14.0
Q ss_pred cccCccCcccccCCCc
Q psy5785 157 LYECILCACCSTSCPS 172 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~ 172 (340)
...|+.||.|+.+||.
T Consensus 8 ~~~C~~C~~C~~~Cp~ 23 (66)
T 1sj1_A 8 QDTCIGDAICASLCPD 23 (66)
T ss_dssp TTTCCCCCHHHHHCTT
T ss_pred cccCcCchHHHHhCCc
Confidence 4569999999999995
No 51
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=61.33 E-value=1.4 Score=29.90 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.7
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|+.+||...
T Consensus 38 ~~C~~C~~C~~~CP~~A 54 (58)
T 1f2g_A 38 SDLDCVEEAIDSCPAEA 54 (58)
T ss_dssp CCSTHHHHHHHTCSSCC
T ss_pred cchHHHHHHHhhCChhh
Confidence 46999999999999863
No 52
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=61.11 E-value=2.6 Score=32.50 Aligned_cols=19 Identities=32% Similarity=0.744 Sum_probs=15.9
Q ss_pred cccCccCcccccCCCcccc
Q psy5785 157 LYECILCACCSTSCPSYWW 175 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~~~ 175 (340)
...|+.||.|+.+||...+
T Consensus 36 ~~~C~~Cg~C~~~CP~~Ai 54 (105)
T 2v2k_A 36 PDECVDCGACEPVCPVEAI 54 (105)
T ss_dssp TTTCCCCCCSGGGCTTCCE
T ss_pred CCcCcchhhHHHhCCccCE
Confidence 4569999999999998543
No 53
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=61.01 E-value=1.9 Score=36.97 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=15.4
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|+.+||...
T Consensus 44 ~~C~~Cg~Cv~~CP~~A 60 (166)
T 3gyx_B 44 EACWECYSCIKICPQGA 60 (166)
T ss_dssp GGCCCCCHHHHHCSSCC
T ss_pred ccCcccChHhHhCCccc
Confidence 67999999999999874
No 54
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=60.87 E-value=1.1 Score=44.79 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=36.8
Q ss_pred cccccC--ccCcccccCCCcccc----CCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC--CCceE
Q psy5785 155 DGLYEC--ILCACCSTSCPSYWW----NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN--DKVSK 226 (340)
Q Consensus 155 ~~~~~C--I~CG~C~s~CP~~~~----ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~--~~~~~ 226 (340)
.....| +.||+|... + || .. ..+|.+.+.+. ..+++
T Consensus 34 g~k~gC~~G~CGaCtV~-----v~~~~~g---------------------------~~----v~sCl~~~~~~~g~~i~T 77 (462)
T 2w3s_A 34 GTKEGCNEGDCGACTVM-----IRDAAGS---------------------------RA----VNACLMMLPQIAGKALRT 77 (462)
T ss_dssp TSCCSCSSSSSCTTEEE-----EEETTEE---------------------------EE----EETTTCBGGGGTTCEEEC
T ss_pred ccCCCCCCCCcCCcEEE-----EEecCCC---------------------------eE----EEchhhhHHHhCCCcEEE
Confidence 456779 999999987 6 54 23 67899888764 45799
Q ss_pred EEeCCC-----Cceeeecc
Q psy5785 227 IYPLPH-----MYVVKDLV 240 (340)
Q Consensus 227 I~pL~~-----~pvikDLv 240 (340)
||+|.+ -||++.++
T Consensus 78 iEgl~~~~~~~~~~q~a~~ 96 (462)
T 2w3s_A 78 IEGIAAPDGRLHPVQQAMI 96 (462)
T ss_dssp GGGTSCTTSCCCHHHHHHH
T ss_pred ECCCCCCCCCCCHHHHHHH
Confidence 999974 56777664
No 55
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=60.74 E-value=1.9 Score=36.29 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=15.0
Q ss_pred hhhhhcccccccCCCcc
Q psy5785 283 YECILCACCSTSCPSYW 299 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~~ 299 (340)
..|+.||.|+.+||...
T Consensus 45 ~~C~~Cg~Cv~~CP~~A 61 (150)
T 1jnr_B 45 DMCWECYSCVKMCPQGA 61 (150)
T ss_dssp GGCCCCCHHHHHCTTCC
T ss_pred ccCcCHhHHHHhCCccc
Confidence 56999999999999863
No 56
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=59.55 E-value=2.1 Score=36.98 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=30.9
Q ss_pred ccccC--ccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC--CCceEEEeCC
Q psy5785 156 GLYEC--ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN--DKVSKIYPLP 231 (340)
Q Consensus 156 ~~~~C--I~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~--~~~~~I~pL~ 231 (340)
....| ..||+|... +|| .. ..+|.+.+.+. ..+++||+|.
T Consensus 38 tk~gC~~G~CGACtV~-----vdG---------------------------~~----v~sC~~~~~~~~G~~I~TiEgl~ 81 (160)
T 3hrd_D 38 VKEGCSEGECGACTVI-----FNG---------------------------DP----VTTCCMLAGQADESTIITLEGVA 81 (160)
T ss_dssp SCCSSSSSSSCTTEEE-----ETT---------------------------EE----EEGGGSBGGGGTTEEEECGGGTS
T ss_pred cccccCCCCCCCCEEE-----ECC---------------------------EE----EEchhhhhhhhCCCceEEeCCCC
Confidence 45668 999999988 887 34 67899888753 4567888886
Q ss_pred C
Q psy5785 232 H 232 (340)
Q Consensus 232 ~ 232 (340)
.
T Consensus 82 ~ 82 (160)
T 3hrd_D 82 E 82 (160)
T ss_dssp B
T ss_pred C
Confidence 4
No 57
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=58.31 E-value=2.4 Score=45.90 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=33.2
Q ss_pred ccccccC--ccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC---CCceEEE
Q psy5785 154 LDGLYEC--ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN---DKVSKIY 228 (340)
Q Consensus 154 l~~~~~C--I~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~---~~~~~I~ 228 (340)
+....+| ..||+|... +|| .. .++|.+.+.+. ...++||
T Consensus 34 ~g~k~gC~~g~CGaCtv~-----vdg---------------------------~~----~~sC~~~~~~~~~g~~i~Tie 77 (907)
T 1vlb_A 34 TGVKVGCEQGQCGACSVI-----LDG---------------------------KV----VRACVTKMKRVADGAQITTIE 77 (907)
T ss_dssp TTSCCSSSSSSSCTTEEE-----ETT---------------------------EE----EEGGGCBGGGSCTTCEEECHH
T ss_pred CeecCCCCCCCcCccEEE-----ECC---------------------------eE----eechHhHHHHHcCCCcEEEEC
Confidence 4567789 999999988 887 34 67899887654 3578999
Q ss_pred eCCC
Q psy5785 229 PLPH 232 (340)
Q Consensus 229 pL~~ 232 (340)
+|..
T Consensus 78 gl~~ 81 (907)
T 1vlb_A 78 GVGQ 81 (907)
T ss_dssp HHCB
T ss_pred CCCC
Confidence 9974
No 58
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=55.98 E-value=3.4 Score=29.95 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.4
Q ss_pred hhhhhh--cccccccCCCcc
Q psy5785 282 LYECIL--CACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIl--Cg~C~saCP~~~ 299 (340)
...|+. ||.|+.+||...
T Consensus 5 ~~~C~~c~C~~C~~~Cp~~a 24 (77)
T 1bc6_A 5 TEPCIGTKDASCVEVCPVDC 24 (77)
T ss_dssp CSTTTTCCCCSSTTTCTTCC
T ss_pred CccCCCCCcchhHHhccccc
Confidence 467999 999999999863
No 59
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=54.71 E-value=3.7 Score=40.28 Aligned_cols=19 Identities=37% Similarity=0.814 Sum_probs=16.4
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|+.||.|..+||....
T Consensus 63 ~~~C~~Cg~C~~~CP~~Ai 81 (421)
T 1hfe_L 63 IEACINCGQCLTHCPENAI 81 (421)
T ss_dssp GGGCCCCCTTGGGCTTCCE
T ss_pred hhhCCchhhHHHhhCcCCc
Confidence 4679999999999999854
No 60
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=49.96 E-value=3.9 Score=29.72 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.4
Q ss_pred hhhhhh--cccccccCCCcc
Q psy5785 282 LYECIL--CACCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIl--Cg~C~saCP~~~ 299 (340)
...|+. ||.|..+||...
T Consensus 5 ~~~C~~c~C~~C~~~CP~~a 24 (78)
T 1h98_A 5 CEPCIGVKDQSCVEVCPVEC 24 (78)
T ss_dssp CGGGTTTCCCHHHHHCTTCC
T ss_pred chhCCCCCcChhhhhcCccc
Confidence 467999 999999999853
No 61
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=48.94 E-value=3.4 Score=35.71 Aligned_cols=25 Identities=4% Similarity=0.076 Sum_probs=20.2
Q ss_pred hhhhhhccc-----ccccccCCcc-cceeEE
Q psy5785 77 RSFQLSAAA-----SSAVPAEKPA-KYKTFA 101 (340)
Q Consensus 77 lafr~sCre-----cam~iNG~p~-ac~tl~ 101 (340)
..++++|++ |.|.|||++. +|.+..
T Consensus 36 tg~k~gC~~G~CGaCtV~vdG~~v~sC~~~~ 66 (163)
T 1ffv_A 36 TGAHIGCETSHCGACTVDIDGRSVKSCTHLA 66 (163)
T ss_dssp TTSCCCCSSSCSCTTEEEETTEEEEGGGSBG
T ss_pred cccccCCCCCCCCCCEEEECCcEecchHhhH
Confidence 467888888 5789999998 997664
No 62
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=47.62 E-value=3.7 Score=40.32 Aligned_cols=19 Identities=37% Similarity=0.784 Sum_probs=16.4
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+...|+.||.|+.+||...
T Consensus 31 d~~kCi~Cg~C~~~CP~~a 49 (421)
T 1hfe_L 31 DEAKCIGCDTCSQYCPTAA 49 (421)
T ss_dssp CTTTCCCCCHHHHHCTTCC
T ss_pred CcccCCCccHHHHhcCcCc
Confidence 4678999999999999853
No 63
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=45.92 E-value=4 Score=35.33 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=20.0
Q ss_pred hhhhhhccc-----ccccccCCcc-cceeEE
Q psy5785 77 RSFQLSAAA-----SSAVPAEKPA-KYKTFA 101 (340)
Q Consensus 77 lafr~sCre-----cam~iNG~p~-ac~tl~ 101 (340)
..++++|++ |.|.|||++. +|.+..
T Consensus 36 ~g~k~gC~~G~CGaCtV~vdG~~v~SC~~~~ 66 (166)
T 1n62_A 36 TGAHIGCDTSHCGACTVDLDGMSVKSCTMFA 66 (166)
T ss_dssp TTSCCCCSSSCSCTTEEEETTEEEEGGGSBG
T ss_pred CccccCCCCCCCCCCEEEECCcEEechhhhH
Confidence 467888888 5789999998 997664
No 64
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=44.45 E-value=4.5 Score=45.24 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=17.0
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+...||.||.|+.+||+..
T Consensus 684 d~~kCi~Cg~Cv~vCP~~A 702 (1231)
T 2c42_A 684 VPENCIQCNQCAFVCPHSA 702 (1231)
T ss_dssp CTTTCCCCCHHHHHCSSCC
T ss_pred eCccCCchhhHHHhCCccc
Confidence 4689999999999999974
No 65
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=43.33 E-value=4.6 Score=40.96 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.0
Q ss_pred cccccCccCcccccCCCcccc
Q psy5785 155 DGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~~~ 175 (340)
.....||.||.|...||...+
T Consensus 548 i~~~~Ci~C~~C~~~cp~~~i 568 (584)
T 2gmh_A 548 INAQNCVHCKTCDIKDPSQNI 568 (584)
T ss_dssp ECGGGCCCCCHHHHHCTTCCE
T ss_pred EeCCCCcCCCCchhhCCCCCc
Confidence 345679999999999998544
No 66
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=41.99 E-value=5.7 Score=40.28 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=17.1
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
+..+||.||.|..+||...
T Consensus 549 ~~~~Ci~C~~C~~~cp~~~ 567 (584)
T 2gmh_A 549 NAQNCVHCKTCDIKDPSQN 567 (584)
T ss_dssp CGGGCCCCCHHHHHCTTCC
T ss_pred eCCCCcCCCCchhhCCCCC
Confidence 6789999999999999863
No 67
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=41.97 E-value=8.5 Score=35.62 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=16.9
Q ss_pred ccccccCccCcccccCCCccc
Q psy5785 154 LDGLYECILCACCSTSCPSYW 174 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~ 174 (340)
+.....|+.|+.|..+||..+
T Consensus 7 ~iD~~kCiGC~~C~~AC~~~~ 27 (274)
T 1ti6_B 7 VIDVAKCQDCNNCFMGCMDEH 27 (274)
T ss_dssp EEEGGGCCCCCHHHHHHHHHH
T ss_pred EEcHHHCCCccHHHHhccHHH
Confidence 344667999999999999864
No 68
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=41.87 E-value=5.2 Score=42.76 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.9
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|..+||+..
T Consensus 451 ~~~~Ci~Cg~C~~vCP~ga 469 (807)
T 3cf4_A 451 IHDTCIGCRRCEQVCKKEI 469 (807)
T ss_dssp HHHHCCCCCHHHHHCTTCC
T ss_pred chhhccchhhHHHhCCCCC
Confidence 3578999999999999985
No 69
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=39.56 E-value=5.7 Score=40.54 Aligned_cols=19 Identities=32% Similarity=0.784 Sum_probs=16.4
Q ss_pred hhhhhhcccccccCCCccc
Q psy5785 282 LYECILCACCSTSCPSYWW 300 (340)
Q Consensus 282 ~~~CIlCg~C~saCP~~~~ 300 (340)
...|+.||.|+.+||....
T Consensus 187 ~~~Ci~Cg~Cv~~CP~gAi 205 (574)
T 3c8y_A 187 DTNCLLCGQCIIACPVAAL 205 (574)
T ss_dssp GSSCCCCCHHHHHCSSTTE
T ss_pred hhhCCcchhHHHhhccCCc
Confidence 4679999999999999743
No 70
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=39.55 E-value=5.3 Score=43.20 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=32.7
Q ss_pred ccccccC--ccCcccccCCCccccCCCccCChHHHHHHHHHhhCCcchhHHHhhhccCCCccccccccCC---CCceEEE
Q psy5785 154 LDGLYEC--ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDAN---DKVSKIY 228 (340)
Q Consensus 154 l~~~~~C--I~CG~C~s~CP~~~~ng~~flGPa~l~qa~Rf~~DpRD~~~~~Rl~~l~~~~~c~~~~~~~---~~~~~I~ 228 (340)
......| ..||+|... +|| .. ..+|.+.+.+. ..+++||
T Consensus 34 ~g~k~gC~~G~CGaCtv~-----vdg---------------------------~~----v~sC~~~~~~~~~g~~i~TiE 77 (907)
T 1dgj_A 34 TSVKVGCGKGQCGACTVI-----LDG---------------------------KV----VRACIIKMSRVAENASVTTLE 77 (907)
T ss_dssp TTSCCSSSSSSSCTTEEE-----ETT---------------------------EE----EEGGGCBGGGSCTTCEEECGG
T ss_pred CccCCCCCCCCcCceEEE-----ECC---------------------------eE----eehhHhHHHHHcCCCcEEEEC
Confidence 3556779 999999988 887 34 67899887653 4578999
Q ss_pred eCCC
Q psy5785 229 PLPH 232 (340)
Q Consensus 229 pL~~ 232 (340)
+|..
T Consensus 78 gl~~ 81 (907)
T 1dgj_A 78 GIGA 81 (907)
T ss_dssp GTCB
T ss_pred CCCC
Confidence 9974
No 71
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=38.13 E-value=6.3 Score=44.08 Aligned_cols=17 Identities=29% Similarity=1.017 Sum_probs=15.3
Q ss_pred chhhhhhcccccccCCC
Q psy5785 281 GLYECILCACCSTSCPS 297 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~ 297 (340)
...+|+.||.|+.+||.
T Consensus 740 ~~~~C~gCG~Cv~vCP~ 756 (1231)
T 2c42_A 740 NTLDCMGCGNCADICPP 756 (1231)
T ss_dssp CTTTCCCCCHHHHHCSS
T ss_pred chhhCCChhHHHhhCCC
Confidence 34689999999999999
No 72
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=37.90 E-value=7 Score=37.62 Aligned_cols=18 Identities=33% Similarity=1.010 Sum_probs=16.1
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
+...|+.||.|..+||..
T Consensus 237 d~~~C~~Cg~C~~~CP~~ 254 (366)
T 3mm5_B 237 DVEKCMYCGNCYTMCPGM 254 (366)
T ss_dssp CGGGCCCCCHHHHHCTTC
T ss_pred ehhhCCCcchHHHhCCHh
Confidence 467899999999999995
No 73
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=37.77 E-value=6.5 Score=32.91 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=16.1
Q ss_pred chhhhhhcc-----cccccCCCcc
Q psy5785 281 GLYECILCA-----CCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg-----~C~saCP~~~ 299 (340)
....|+.|| .|+.+||...
T Consensus 6 d~~~C~~C~~~~~~~C~~~CP~~a 29 (150)
T 1jnr_B 6 NPEKCDGCKALERTACEYICPNDL 29 (150)
T ss_dssp CTTTCCSCCSSSSCHHHHHCTTSC
T ss_pred CcccCCCCCCcccccchhhcCccC
Confidence 356899999 9999999853
No 74
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=37.70 E-value=6.6 Score=42.01 Aligned_cols=19 Identities=26% Similarity=0.711 Sum_probs=17.2
Q ss_pred chhhhhhcccccccCCCcc
Q psy5785 281 GLYECILCACCSTSCPSYW 299 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~ 299 (340)
....|+.||.|..+||...
T Consensus 413 ~~~~Ci~CG~C~~~CP~~~ 431 (807)
T 3cf4_A 413 MVAKCADCGACLLACPEEI 431 (807)
T ss_dssp HHHHCCCCCHHHHHCTTCC
T ss_pred hHHhCCCCCchhhhCCCCC
Confidence 5789999999999999984
No 75
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=37.04 E-value=6.7 Score=33.43 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=15.7
Q ss_pred hhhhhhcc-----cccccCCCcc
Q psy5785 282 LYECILCA-----CCSTSCPSYW 299 (340)
Q Consensus 282 ~~~CIlCg-----~C~saCP~~~ 299 (340)
...|+.|| .|+.+||...
T Consensus 6 ~~~C~gC~~c~~~~C~~~CP~~a 28 (166)
T 3gyx_B 6 PSKCDGCKGGEKTACMYICPNDL 28 (166)
T ss_dssp TTTCCCCCSSSCCHHHHHCTTSC
T ss_pred chhcCCCCCCCcchhHHhCCccc
Confidence 46799999 9999999853
No 76
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=35.19 E-value=7.9 Score=41.87 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=20.8
Q ss_pred hhhhhhccc-----ccccccCCcc-cceeEE
Q psy5785 77 RSFQLSAAA-----SSAVPAEKPA-KYKTFA 101 (340)
Q Consensus 77 lafr~sCre-----cam~iNG~p~-ac~tl~ 101 (340)
.+++++|++ |.|+|||++. +|.++.
T Consensus 34 ~g~k~gC~~g~CGaCtv~vdg~~~~sC~~~~ 64 (907)
T 1vlb_A 34 TGVKVGCEQGQCGACSVILDGKVVRACVTKM 64 (907)
T ss_dssp TTSCCSSSSSSSCTTEEEETTEEEEGGGCBG
T ss_pred CeecCCCCCCCcCccEEEECCeEeechHhHH
Confidence 588999998 5799999998 997663
No 77
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=34.53 E-value=7.9 Score=37.36 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=10.3
Q ss_pred hhhhhcccccccCCCc
Q psy5785 283 YECILCACCSTSCPSY 298 (340)
Q Consensus 283 ~~CIlCg~C~saCP~~ 298 (340)
..|+.||.|+.+||..
T Consensus 182 ~kCigCg~Cv~aCP~~ 197 (352)
T 2ivf_B 182 ERCKGHRHCVEACPYK 197 (352)
T ss_dssp TTCCCCCHHHHHCTTC
T ss_pred hhcCCchHHHhhcCcc
Confidence 4566666666666654
No 78
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=34.41 E-value=7.7 Score=37.71 Aligned_cols=18 Identities=33% Similarity=0.927 Sum_probs=15.9
Q ss_pred chhhhhhcccccccCCCc
Q psy5785 281 GLYECILCACCSTSCPSY 298 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~ 298 (340)
+...|+-||.|+.+||..
T Consensus 254 d~~~Ci~Cg~C~~~CP~~ 271 (386)
T 3or1_B 254 NNDRCMYCGNCYTMCPAL 271 (386)
T ss_dssp CTTTCCCCCHHHHHCTTC
T ss_pred CCCcCCccccHHHhCcHh
Confidence 457899999999999993
No 79
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=33.83 E-value=8.2 Score=33.70 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=16.3
Q ss_pred ccccccCccCcccccCCCccc
Q psy5785 154 LDGLYECILCACCSTSCPSYW 174 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~~ 174 (340)
+.....||.|+.|..+||...
T Consensus 7 ~iD~~~CigC~~C~~aC~~~~ 27 (195)
T 2vpz_B 7 AIDLSLCVGCAACAVACKMEN 27 (195)
T ss_dssp EEETTTCCCCCHHHHHHHHHT
T ss_pred EeeHHHCcChhHHHHHhhHhh
Confidence 344567999999999998863
No 80
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=33.63 E-value=5.1 Score=35.06 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=17.2
Q ss_pred hchhhhhhcccccccCCCcc
Q psy5785 280 DGLYECILCACCSTSCPSYW 299 (340)
Q Consensus 280 ~~~~~CIlCg~C~saCP~~~ 299 (340)
.+...|+.||.|+.+||...
T Consensus 8 iD~~~CigC~~C~~aC~~~~ 27 (195)
T 2vpz_B 8 IDLSLCVGCAACAVACKMEN 27 (195)
T ss_dssp EETTTCCCCCHHHHHHHHHT
T ss_pred eeHHHCcChhHHHHHhhHhh
Confidence 35789999999999999864
No 81
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=32.25 E-value=10 Score=35.31 Aligned_cols=20 Identities=30% Similarity=0.863 Sum_probs=15.4
Q ss_pred ccccccCccCcccccCCCcc
Q psy5785 154 LDGLYECILCACCSTSCPSY 173 (340)
Q Consensus 154 l~~~~~CI~CG~C~s~CP~~ 173 (340)
+.....||.|+.|..+|+..
T Consensus 33 ~iD~~kCigC~~C~~AC~~~ 52 (294)
T 1kqf_B 33 LIDVSTCIGCKACQVACSEW 52 (294)
T ss_dssp EEETTTCCCCCHHHHHHHHH
T ss_pred EEeHhhCCCCcHHHHHHHHH
Confidence 45567788888888888874
No 82
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=32.14 E-value=7.8 Score=40.98 Aligned_cols=18 Identities=11% Similarity=0.027 Sum_probs=16.0
Q ss_pred hhhhcccccccCCCcccC
Q psy5785 284 ECILCACCSTSCPSYWWN 301 (340)
Q Consensus 284 ~CIlCg~C~saCP~~~~~ 301 (340)
.|+.||.|+.+||+....
T Consensus 219 ~C~~CG~Cv~vCP~gAl~ 236 (783)
T 3i9v_3 219 PSGFSGNITDICPVGALL 236 (783)
T ss_dssp CSTTTTTHHHHCSSSSEE
T ss_pred CCccchhHHhhcccCcee
Confidence 699999999999998654
No 83
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=32.05 E-value=8.8 Score=37.28 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=17.0
Q ss_pred cccccCccCcccccCCCcccc
Q psy5785 155 DGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~~~ 175 (340)
.....|+.||.|+.+||...+
T Consensus 253 id~~~Ci~Cg~C~~~CP~~Ai 273 (386)
T 3or1_B 253 INNDRCMYCGNCYTMCPALPL 273 (386)
T ss_dssp ECTTTCCCCCHHHHHCTTCCC
T ss_pred cCCCcCCccccHHHhCcHhhC
Confidence 345669999999999998545
No 84
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=31.28 E-value=9.1 Score=36.82 Aligned_cols=21 Identities=29% Similarity=0.730 Sum_probs=16.9
Q ss_pred cccccCccCcccccCCCcccc
Q psy5785 155 DGLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~~~ 175 (340)
.....|+.||.|+.+||...+
T Consensus 236 id~~~C~~Cg~C~~~CP~~Ai 256 (366)
T 3mm5_B 236 VDVEKCMYCGNCYTMCPGMPL 256 (366)
T ss_dssp ECGGGCCCCCHHHHHCTTCCC
T ss_pred EehhhCCCcchHHHhCCHhhc
Confidence 334569999999999999644
No 85
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=31.00 E-value=16 Score=33.69 Aligned_cols=20 Identities=10% Similarity=-0.184 Sum_probs=16.2
Q ss_pred cccccCccCcccccCCCccc
Q psy5785 155 DGLYECILCACCSTSCPSYW 174 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~~ 174 (340)
.....||.||.|..+||..-
T Consensus 94 id~~~CigC~~C~~~CP~~A 113 (274)
T 1ti6_B 94 IDPEKAKGKKELLDTCPYGV 113 (274)
T ss_dssp ECTTTTTTCGGGGGGCSSCC
T ss_pred echhhccchHHHHhhCccCC
Confidence 34567999999999999753
No 86
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=30.25 E-value=11 Score=38.42 Aligned_cols=20 Identities=30% Similarity=0.747 Sum_probs=16.5
Q ss_pred ccccCccCcccccCCCcccc
Q psy5785 156 GLYECILCACCSTSCPSYWW 175 (340)
Q Consensus 156 ~~~~CI~CG~C~s~CP~~~~ 175 (340)
....|+.||.|+.+||+..+
T Consensus 186 ~~~~Ci~Cg~Cv~~CP~gAi 205 (574)
T 3c8y_A 186 DDTNCLLCGQCIIACPVAAL 205 (574)
T ss_dssp GGSSCCCCCHHHHHCSSTTE
T ss_pred chhhCCcchhHHHhhccCCc
Confidence 35679999999999998543
No 87
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=29.70 E-value=7.3 Score=34.52 Aligned_cols=16 Identities=25% Similarity=0.825 Sum_probs=0.0
Q ss_pred chhhhhhcccccccCC
Q psy5785 281 GLYECILCACCSTSCP 296 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP 296 (340)
+...||.|++|+.+|+
T Consensus 7 D~~kCigC~~C~~AC~ 22 (214)
T 1h0h_B 7 DTTRCTACRGCQVACK 22 (214)
T ss_dssp EGGGCCCCCHHHHHHH
T ss_pred eHHHCCCCcHHHHHhh
No 88
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=28.11 E-value=12 Score=37.95 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=7.1
Q ss_pred hhhhcccccccCCC
Q psy5785 284 ECILCACCSTSCPS 297 (340)
Q Consensus 284 ~CIlCg~C~saCP~ 297 (340)
.|+.||.|..+||.
T Consensus 216 kCigCg~Cv~~CP~ 229 (512)
T 1q16_B 216 KCRGWRMCITGCPY 229 (512)
T ss_dssp TCCCCCCHHHHCTT
T ss_pred HCCCchHHHhhCCc
Confidence 35555555555554
No 89
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=27.55 E-value=7.6 Score=36.16 Aligned_cols=21 Identities=33% Similarity=0.872 Sum_probs=18.1
Q ss_pred HhhchhhhhhcccccccCCCc
Q psy5785 278 KLDGLYECILCACCSTSCPSY 298 (340)
Q Consensus 278 ~~~~~~~CIlCg~C~saCP~~ 298 (340)
.+.+...||.|+.|+.+|+..
T Consensus 32 ~~iD~~kCigC~~C~~AC~~~ 52 (294)
T 1kqf_B 32 KLIDVSTCIGCKACQVACSEW 52 (294)
T ss_dssp EEEETTTCCCCCHHHHHHHHH
T ss_pred EEEeHhhCCCCcHHHHHHHHH
Confidence 355789999999999999975
No 90
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=25.32 E-value=12 Score=32.19 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=20.0
Q ss_pred hhhhhhccc-----ccccccCCcc-cceeEE
Q psy5785 77 RSFQLSAAA-----SSAVPAEKPA-KYKTFA 101 (340)
Q Consensus 77 lafr~sCre-----cam~iNG~p~-ac~tl~ 101 (340)
..++++|++ |.+.|||++. +|.+..
T Consensus 36 tgtk~gC~~G~CGACtV~vdG~~v~sC~~~~ 66 (160)
T 3hrd_D 36 TSVKEGCSEGECGACTVIFNGDPVTTCCMLA 66 (160)
T ss_dssp TTSCCSSSSSSSCTTEEEETTEEEEGGGSBG
T ss_pred CccccccCCCCCCCCEEEECCEEEEchhhhh
Confidence 468888888 5789999998 997653
No 91
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=25.15 E-value=14 Score=40.19 Aligned_cols=15 Identities=33% Similarity=0.919 Sum_probs=13.3
Q ss_pred hhhhhcccccccCCC
Q psy5785 283 YECILCACCSTSCPS 297 (340)
Q Consensus 283 ~~CIlCg~C~saCP~ 297 (340)
..|+.||.|+.+||.
T Consensus 984 ~~C~~Cg~C~~~CP~ 998 (1025)
T 1gte_A 984 DTCTGCTLCLSVCPI 998 (1025)
T ss_dssp TTCCCCCHHHHHCSS
T ss_pred ccCCChhHHHhhCCC
Confidence 779999999999997
No 92
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=24.30 E-value=27 Score=26.08 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.7
Q ss_pred eEEEEEecCCCC
Q psy5785 49 KTFAIYRWNPDK 60 (340)
Q Consensus 49 ~~~~I~R~~P~~ 60 (340)
=+++||||||+.
T Consensus 38 g~iKIykyde~t 49 (72)
T 3kvp_A 38 GYIKIYEYNESR 49 (72)
T ss_dssp TEEEEEEEETTT
T ss_pred CEEEEEEeCCCC
Confidence 358999999964
No 93
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=24.03 E-value=15 Score=36.14 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=17.3
Q ss_pred chhhhhhcccccccCCCccc
Q psy5785 281 GLYECILCACCSTSCPSYWW 300 (340)
Q Consensus 281 ~~~~CIlCg~C~saCP~~~~ 300 (340)
+...|+-||.|..+||....
T Consensus 282 d~~~Ci~Cg~Ci~~CP~~~~ 301 (418)
T 3mm5_A 282 DNRECVRCMHCINKMPKALK 301 (418)
T ss_dssp CTTTCCCCCHHHHHCTTTEE
T ss_pred ChhhcCccChhHHhCcHhhc
Confidence 56789999999999998754
No 94
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=23.48 E-value=19 Score=35.56 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.7
Q ss_pred cccccCccCcccccCCCccccC
Q psy5785 155 DGLYECILCACCSTSCPSYWWN 176 (340)
Q Consensus 155 ~~~~~CI~CG~C~s~CP~~~~n 176 (340)
.....|+.||-|..+||...+.
T Consensus 281 id~~~Ci~Cg~Ci~~CP~~~~~ 302 (418)
T 3mm5_A 281 IDNRECVRCMHCINKMPKALKP 302 (418)
T ss_dssp ECTTTCCCCCHHHHHCTTTEEC
T ss_pred EChhhcCccChhHHhCcHhhcc
Confidence 3456799999999999997543
No 95
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=23.38 E-value=17 Score=38.39 Aligned_cols=18 Identities=11% Similarity=0.027 Sum_probs=15.9
Q ss_pred cCccCcccccCCCccccC
Q psy5785 159 ECILCACCSTSCPSYWWN 176 (340)
Q Consensus 159 ~CI~CG~C~s~CP~~~~n 176 (340)
.|+.||.|+.+||+.-..
T Consensus 219 ~C~~CG~Cv~vCP~gAl~ 236 (783)
T 3i9v_3 219 PSGFSGNITDICPVGALL 236 (783)
T ss_dssp CSTTTTTHHHHCSSSSEE
T ss_pred CCccchhHHhhcccCcee
Confidence 799999999999997653
No 96
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=22.11 E-value=16 Score=37.50 Aligned_cols=17 Identities=35% Similarity=0.782 Sum_probs=14.5
Q ss_pred cccCccCcccccCCCcc
Q psy5785 157 LYECILCACCSTSCPSY 173 (340)
Q Consensus 157 ~~~CI~CG~C~s~CP~~ 173 (340)
..-||.||.|+-.||--
T Consensus 52 ~~~c~~~~~~~~~cp~~ 68 (608)
T 3j16_B 52 EILCIGCGICVKKCPFD 68 (608)
T ss_dssp TTTCCCCCHHHHHCSSC
T ss_pred hhhccccccccccCCcc
Confidence 34599999999999974
No 97
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=21.28 E-value=19 Score=39.17 Aligned_cols=15 Identities=33% Similarity=0.919 Sum_probs=14.2
Q ss_pred ccCccCcccccCCCc
Q psy5785 158 YECILCACCSTSCPS 172 (340)
Q Consensus 158 ~~CI~CG~C~s~CP~ 172 (340)
..|+.||.|+.+||.
T Consensus 984 ~~C~~Cg~C~~~CP~ 998 (1025)
T 1gte_A 984 DTCTGCTLCLSVCPI 998 (1025)
T ss_dssp TTCCCCCHHHHHCSS
T ss_pred ccCCChhHHHhhCCC
Confidence 679999999999998
Done!